BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] (675 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus] Length = 675 Score = 1410 bits (3651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 675/675 (100%), Positives = 675/675 (100%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA Sbjct: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS Sbjct: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS Sbjct: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK Sbjct: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS Sbjct: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII Sbjct: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA Sbjct: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN Sbjct: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA Sbjct: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN Sbjct: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG Sbjct: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 Query: 661 LPLKAEGYESKRYRK 675 LPLKAEGYESKRYRK Sbjct: 661 LPLKAEGYESKRYRK 675 >gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 673 Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/677 (59%), Positives = 491/677 (72%), Gaps = 6/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M LFID ETRSP L K G+ YAE+ + L A+ +D ++LWDC +PVMP L + Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ V VAHNS FER + K N+ IP RWICT LAR NGLP++LK ALK Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG E YD + NH +AW+LFGEYCK DV TRE++KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E+ LW LDQ INDRGY +D+ L L +++ ER KLD+EL++LT+G++ SSR + Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L +LFL GL L D+ E+T LS +T +A + NNR+ +S+SA+LKLNTL A+ Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALS-QPNITQRAKDILNNRLSSSQSAILKLNTLSGAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + D RLRGTLQF GASRTGRWSGCVF PQNLPRP+ SHE +++ I ++ SD DPL+ Sbjct: 300 SPDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIES--SNFPSD-DPLR 356 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGEQWKL AF GED+Y T Y+++FN Sbjct: 357 FASDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFN 416 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + + VTKDQRAIGKVMELALGYQGGA+ FQ MAS GL+L F+ +K + ++WE A Sbjct: 417 IPLSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQA 476 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + C WMQE +PE A+ D FIGTACE VK AWR KH V +LW + +AF+ I++G++I Sbjct: 477 QRRCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSI 536 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ VP + MKK N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKLT Sbjct: 537 SARRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLT 596 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDILA GM+NAT+AGYDIVLTVHDEIVCETPDT EF++ L LMT NP WA Sbjct: 597 ENIVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWA 656 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+ RYRK Sbjct: 657 KGLPLKAEGYEALRYRK 673 >gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 675 Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/678 (58%), Positives = 490/678 (72%), Gaps = 6/678 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M LFID ETRSP L K G+ YAE+ + L A+ +D ++LWDC +PVMP L + Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ V VAHNS FER + K N+ IP RWICT LAR NGLP++LK ALK Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG E YD + NH +AW+LFGEYCK DV TRE++KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E+ LW LDQ INDRGY +D+ L L +++ ER +LD+E + LT G++ S+R + Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNTLVEA 297 L +LFL TGL L D+ E+T LS PQ + + NNR+ +S+SA+LKLNTL A Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQPD--IPQLSKAILNNRLSSSQSAILKLNTLSGA 298 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++ D RLRGTLQF GASRTGRWSGCVF PQNLPR + + +E++++I L + + DPL Sbjct: 299 VSPDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIK-DPL 357 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 + SDCVRSC+IAS GKKL+VADLAGIEARVLAW+AGEQWKL AF GED+Y T Y+++F Sbjct: 358 RFASDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAF 417 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 NV + VTKDQRAIGKVMELALGYQGGA+ FQKMAST GLNL F+ +K + E+WE Sbjct: 418 NVPLSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQ 477 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 A+ C WMQE HPE A+ D FIGTACE VK+AWR KH V +LW + +AF+ I++G++ Sbjct: 478 AQRRCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRS 537 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 I AR+ VP + MKK N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKL Sbjct: 538 ISARRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKL 597 Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 TENIVQA+SRDILA GM+NATKAGYDIVLTVHDEIVCE PDT EF++ L LMT NP+W Sbjct: 598 TENIVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTW 657 Query: 658 AKGLPLKAEGYESKRYRK 675 AKGLPLKAEGYE+ RYRK Sbjct: 658 AKGLPLKAEGYEAVRYRK 675 >gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1] gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2] gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2] gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1] Length = 675 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFC G YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL E + Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSETV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/677 (59%), Positives = 482/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFC G YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KG PLKAEGYE+KRYRK Sbjct: 659 KGFPLKAEGYEAKRYRK 675 >gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/677 (59%), Positives = 482/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFC G YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPD F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] Length = 687 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/696 (39%), Positives = 394/696 (56%), Gaps = 38/696 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPHLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF TG DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +A++ W E+ + E +FI AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKS---WYNESVKHKSTFGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580 E+T+ + IA ++ + Y+K +D L + LPSGR++ Y N +Y+ Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMG 590 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N+ +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E PDT Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDT 650 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++FN L L+++NP WA +PL A G+E+ YRK Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11] gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11] gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1] Length = 687 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 273/696 (39%), Positives = 393/696 (56%), Gaps = 38/696 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF TG DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +A++ W E+ + E +FI AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKS---WYNESVKRKSTFGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580 E+T+ + IA ++ + Y+K +D L + LPSGR++ Y N +Y+ Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N+ +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E PDT Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDT 650 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++FN L L+++NP WA +PL A G+E+ YRK Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] Length = 687 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 275/696 (39%), Positives = 392/696 (56%), Gaps = 38/696 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP AL + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF TG DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +A++ W E+ + E +FI AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580 E T+ + IA ++ + Y+K +D L + LPSGR++ Y N +Y+ Sbjct: 536 --ECTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMG 590 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N+ +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E+PDT Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDT 650 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++FN L L+++NP WA +PL A G+E+ YRK Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010] Length = 687 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 274/696 (39%), Positives = 393/696 (56%), Gaps = 38/696 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF TG DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +A++ W E+ + E +FI AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580 E+T+ + IA ++ + Y+K +D L + LPSGR++ Y N +Y+ Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N+ +R+ R TYGGKL ENI QA +RDILA M AGY IVLTVHDE++ E PDT Sbjct: 591 VNSYSRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDT 650 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++FN L L++++P WA +PL A G+E+ Y+K Sbjct: 651 EDFNDKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718] gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718] Length = 687 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 274/696 (39%), Positives = 392/696 (56%), Gaps = 38/696 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF TG DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +A++ W E+ + E +FI AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580 E T+ + IA ++ + Y+K +D L + LPSGR++ Y N +Y+ Sbjct: 536 --ECTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMG 590 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N+ +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E+PDT Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDT 650 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++FN L L+++NP WA +PL A G+E+ YRK Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] Length = 687 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 274/696 (39%), Positives = 393/696 (56%), Gaps = 38/696 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF TG DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +A++ W E+ + E +FI AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580 E+T+ + IA ++ + Y+K +D L + LPSGR++ Y N +Y+ Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N+ +R+ R TYGGKL ENI QA +RDILA M AGY IVLTVHDE++ E PDT Sbjct: 591 VNSYSRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDT 650 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++FN L L++++P WA +PL A G+E+ Y+K Sbjct: 651 EDFNDKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171] gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171] Length = 687 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 273/696 (39%), Positives = 393/696 (56%), Gaps = 38/696 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF TG DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +A++ W E+ + E +FI AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKS---WYDESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580 E+T+ + IA ++ + Y+K +D L + LPSGR++ Y N +Y+ Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N+ +R+ R TYGGKL ENI QA +RDILA M AGY IVLTVH+E++ E PDT Sbjct: 591 VNSYSRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDT 650 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++FN L L++++P WA +PL A G+E+ Y+K Sbjct: 651 EDFNDKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605] gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605] Length = 687 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 271/696 (38%), Positives = 393/696 (56%), Gaps = 38/696 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCDIPINN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE+ KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPKWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C+IA GKK+VV+DL+ IE R+LAW+AGE+WKL AF TG DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +A++ W E+ + E +FI AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKS---WYGESVKRKSTYGLSERVFI--ACDSLKRLWRRAHPATCDFWYEL-- 535 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL- 580 E+T+ + IA ++ + Y+K +D L + LPSGR++ Y N +Y+ Sbjct: 536 --ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMG 590 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N+ +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E+PDT Sbjct: 591 VNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDT 650 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++FN L L+++NP WA +PL A G+E+ YRK Sbjct: 651 EDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 272/694 (39%), Positives = 384/694 (55%), Gaps = 34/694 (4%) Query: 3 TLFIDFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 TL++D ET S PI K G YAE V ++LFA+ +++ V++WD +P LK+A Sbjct: 4 TLWLDLETFSEKPI---KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQA 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL--KL 118 L + + I AHNS+F+RT+L + I + RW T+V A ++GLP AL A+ E L L Sbjct: 61 LSDPNTIIYAHNSHFDRTMLNHS-GIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVPL 119 Query: 119 SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +EGK LI FCK R H E W+ F Y D+ RE+ KRL Sbjct: 120 DKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLPS 179 Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + EL W+ DQ INDRG +D+ LA + V++E+ +L + + LT V ++ Sbjct: 180 WNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAATQ 239 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + L + G+ L D+ ++T +R ++ P ++ R+++S ++ K L+ Sbjct: 240 RDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLPLR-ELLAIRLQSSTTSTSKYKALM 298 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353 ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP+ +D+ I L Sbjct: 299 NGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLIY 358 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDL 408 D +Q+ S +R C++A EGKKLVV+DL+ IE R+LAW+AGE WK+ AF G DL Sbjct: 359 DDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGADL 418 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y YAR+FN++P V K R IGKVMEL LGY GG AF A T L+L+ A Sbjct: 419 YKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAALP 478 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 N P+ DA ++ + E + + E +FI C+ +K+ WR H W EL Sbjct: 479 NIPPKVKHDALSWYQKSVETKKTYGLSETVFI--TCDSLKRMWRNAHPETVSFWYELEDT 536 Query: 528 FEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYL--N 581 I + G RK + +++DK L ++LPSGR++ Y R+ SY+ N Sbjct: 537 VRHAISSPGITFPCRKLK------VRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVN 590 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 +R+ R TYGGKL EN+ QA +RD+LA M GYDIVLTVHDE++ E PD Sbjct: 591 PYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPA 650 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 FN L L+ +NP WA LPL A G+E+ YRK Sbjct: 651 FNHEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684 >gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1] gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1] gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1] gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1] Length = 688 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 273/698 (39%), Positives = 388/698 (55%), Gaps = 34/698 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+TLF+D ET + + + G YAE V+LFA+ D+ PV +WD MP L+ A Sbjct: 1 MSTLFLDLETYCEVPI-QNGTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59 Query: 61 LENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L + +V + AHNS+F+RTVL+ A + + + RW T+V A ++ LP AL + + LK+ Sbjct: 60 LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119 Query: 120 SQKMEE--GKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K ++ GK+LI FCK R + H W F EY D+ R I ++L Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179 Query: 177 PLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + + EL W+LDQTINDRG VD LAH + V+ + L +T G V ++ Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + + + GL L D+ ++T +R ++ + L + ++ R++AS ++ K TL Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIA-DPDLPAELRELLGIRLQASTTSTSKYKTL 298 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352 + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP + +++ I L Sbjct: 299 AKGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLL 358 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGED 407 + +++ S +R C++A EGKKLVVADL+ IE R++AW+AGE WKL AF G D Sbjct: 359 FANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPD 418 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 LY YA++F V+P V KDQR IGKVMEL LGY+GG AF A+T G++L+ A Sbjct: 419 LYKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAW 478 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG----TACERVKKAWRQKHSRVSELWNE 523 + + +AE F W E + D + C+ +K+ WR+ H VS W E Sbjct: 479 PSIPADIIAEAEQFLAWRTEQR----LGDFGLKPKTFVVCDALKRLWRRAHPAVSSFWKE 534 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSY 579 L +A + D + ++D L + LPSGR L Y D SY Sbjct: 535 LEEAARLAVLRPGTTY-----DCRTLKARRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSY 589 Query: 580 L--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + N +R+ +R TYGGKL EN+ QA SRD+LA M AGY IVL+VHDE + E Sbjct: 590 MGVNQYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEAD 649 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 D DEF+A+ L LM +NP WA GLPL A G+E+ RYRK Sbjct: 650 DRDEFSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687 >gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703] Length = 699 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 272/714 (38%), Positives = 388/714 (54%), Gaps = 62/714 (8%) Query: 4 LFIDFET--RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET +PI K G YAE V V++ + +D PV WD MP+ LK L Sbjct: 5 LWFDSETFCETPI---KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP------IHRWICTLVLARSNGLPSALKAVGEA 115 ++ + I A NS+F+RT+++ D+P I RW T+V A ++GLP L + E Sbjct: 62 QDPSIEIYAQNSHFDRTMMRH----DMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEI 117 Query: 116 LKLSSQKME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIF 172 L ++ K + EGK LI FCK R H E W+ F +Y D+ R I Sbjct: 118 LGITQDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAID 177 Query: 173 KRLEPL---SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 K+L P+ KE LW+ DQ INDRG +D LA V E+ L + ++LT Sbjct: 178 KKL-PVWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNE 236 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 V ++ + L + G+ L D+ ++T +R ++ + +L ++ R++AS ++ Sbjct: 237 VQAATQRDALLRHIVESFGVDLPDMQKSTLERRIA-DPELPSVLRELLAIRLQASTTSTS 295 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 K TL++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP E +D I L Sbjct: 296 KYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAG 355 Query: 350 ITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF----- 402 + +++IS +R C++A +GKKLVV+DL+ IE RVLAW+AGE+WKL+AF Sbjct: 356 CADLLFDNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDT 415 Query: 403 -----ETGE------DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 E GE DLY YAR+FN++P VTK QR IGKVMEL LG+ GG AF Sbjct: 416 IIGYDEGGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTF 475 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVK 507 A GL+L+ A+ N +A++ W Q + + E +FI AC+ +K Sbjct: 476 ALVYGLDLDELANAALPNVPTSIQREAQS---WYQASVKQKRTFGLSEQVFI--ACDSLK 530 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGK-AIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + WR H W+E+ + I N K + RK + +++D + L + LPSGR Sbjct: 531 RMWRNAHPETVSFWSEIENTVRRAIINPKQTFVCRKLK------IRRDGSWLRIQLPSGR 584 Query: 567 SLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 S+ Y + G+ SY+ NT +R+ R TYGGKL EN QA +RD++A M G Sbjct: 585 SVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARG 644 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 Y+I LTVHDE++ E PDTD F + L L+ +NP WA LPL A G+E+ YRK Sbjct: 645 YEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698 >gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] Length = 693 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/698 (36%), Positives = 386/698 (55%), Gaps = 36/698 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L++D ET S + + G YA + ++L A+ DD PV + + +P L AL + Sbjct: 5 LWLDLETYSETPI-RNGTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALRD 63 Query: 64 TDVTIVAHNSYFERTVLKACF-NLDIP------IHRWICTLVLARSNGLPSALKAVGEAL 116 + + AHNS F+RTVL+ + P + RW T+V A ++GLP +L + + L Sbjct: 64 GETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDIL 123 Query: 117 KLSSQKMEE--GKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFK 173 ++ K ++ GK LI FCK R K H E W+ F +Y D+ REI K Sbjct: 124 GVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREIDK 183 Query: 174 RLEPL---SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ S E LW+ DQ INDRG +D LA V++E+ +L + LT V Sbjct: 184 KL-PVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEV 242 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ + L + G+ L D+ +T QR +S + L + ++ R++AS ++ K Sbjct: 243 QAATQRDVLLKHIVEAFGVTLPDMQASTIQRRVS-DPDLPIELRELLAIRLQASTTSTSK 301 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 TL++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP E +D I L Sbjct: 302 YKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGC 361 Query: 351 TS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----- 403 + +++IS +R C++A EGKKLVV+DL+ IE R L W++GE+WKL+AF Sbjct: 362 ADLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAG 421 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 TG DLY+ YAR+FN++P V K QR IGKVMEL LG+ GG AF A GL+L+ A Sbjct: 422 TGHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLA 481 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWN 522 N +A+++ + + + + E +FI AC+ +K+ WR H + W Sbjct: 482 KAALPNVPASIQREAQSWYKASVKQKRTYGLSEQVFI--ACDSLKRMWRNAHPKTVSFWY 539 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---SY 579 E+ + I + ++ + +++D + L + LPSGR++ Y + + SY Sbjct: 540 EIEDTVRRAIAAPRQTFTCRK-----LKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISY 594 Query: 580 L--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + N+ +R+ R TYGGKLTEN+ QA +RD++A M +GY+I LTVHDE++ E P Sbjct: 595 MGINSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAP 654 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DT++F + L L+ +NP WA LPL A G+E+ YRK Sbjct: 655 DTEQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692 >gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 669 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 259/685 (37%), Positives = 373/685 (54%), Gaps = 57/685 (8%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP- 89 ++ + +D PV WD MP+ LK L++ + I A NS+F+RT+++ D+P Sbjct: 1 MIITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRH----DMPS 56 Query: 90 -----IHRWICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECL 142 I RW T+V A ++GLP L + E L ++ K + EGK LI FCK Sbjct: 57 VIAGGIERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNST 116 Query: 143 YDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL---SSKEQELWYLDQTINDRGYC 198 R H E W+ F +Y D+ R I K+L P+ KE LW+ DQ INDRG Sbjct: 117 IHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKL-PVWNYQGKELALWHFDQLINDRGVQ 175 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 +D LA V E+ L + ++LT V ++ + L + G+ L D+ ++T Sbjct: 176 MDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKST 235 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 +R ++ + +L ++ R++AS ++ K TL++ ++ DGRLRGTLQF GASRTGR Sbjct: 236 LERRIA-DPELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGR 294 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKL 376 W+G +F PQNLPRP E +D I L + +++IS +R C++A +GKKL Sbjct: 295 WAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKL 354 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAF----------ETGE------DLYVTTYARSFNVA 420 VV+DL+ IE RVLAW+AGE+WKL+AF E GE DLY YAR+FN++ Sbjct: 355 VVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNIS 414 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 P VTK QR IGKVMEL LG+ GG AF A GL+L+ A+ N +A++ Sbjct: 415 PDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQS 474 Query: 481 FCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 W Q + + E +FI AC+ +K+ WR H W+E+ + I N K Sbjct: 475 ---WYQASVKQKRTFGLSEQVFI--ACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPK 529 Query: 537 -AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTRE 590 + RK + +++D + L + LPSGRS+ Y + G+ SY+ NT +R+ R Sbjct: 530 QTFVCRKLK------IRRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRL 583 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650 TYGGKL EN QA +RD++A M GY+I LTVHDE++ E PDTD F + L L Sbjct: 584 KTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSEL 643 Query: 651 MTSNPSWAKGLPLKAEGYESKRYRK 675 + +NP WA LPL A G+E+ YRK Sbjct: 644 LATNPEWALDLPLSAGGFEAYHYRK 668 >gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 276/727 (37%), Positives = 377/727 (51%), Gaps = 67/727 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC +P L AL + Sbjct: 11 LWGDLETYSPVPMAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DV R++ KRL Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG +D L + V+ + L Q E+LT G V ++ + Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L G+ L D+ + T R + + L ++ + R +AS ++ K L+ Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVD-DPALPETVRELLSIRRQASSTSTAKYQALLHCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + + D D Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFD-D 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET----------- 404 + + S +RSC+IA + KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 367 VMALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTW 426 Query: 405 -----------------------------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 G+D+Y YA SF +AP V+K+QR IGKV Sbjct: 427 HTGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAI 494 ELALGY GG AF A+ ++L A + P + A W + NH P + Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMA--AQAALPPLLLQQATELLEWTKANHRPTFDL 544 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 D AC+ K+AWR H ++ W L A I + + + ++ Sbjct: 545 SDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETA-----HTCCGITVQYR 598 Query: 555 KNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRD 608 + L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD Sbjct: 599 RAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRD 658 Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGY 668 +LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+ Sbjct: 659 VLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGF 718 Query: 669 ESKRYRK 675 ++ RYRK Sbjct: 719 DTYRYRK 725 >gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 285/728 (39%), Positives = 381/728 (52%), Gaps = 69/728 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ D PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F +Y + DV R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L P+ + ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + + D Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFD- 365 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGT 425 Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 G+D+Y YA SF +AP VTK QR IGKV Sbjct: 426 WHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493 ELALGY GG AF A+ ++L A + P ++A W + NH P Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMA--AQAALPPLLLQEATELLEWTKANHRPTFG 543 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L A I G A + + Y Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597 Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YESKRYRK 675 +E+ RYRK Sbjct: 718 FETHRYRK 725 >gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 726 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 285/728 (39%), Positives = 380/728 (52%), Gaps = 69/728 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C + IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DVT R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297 L L G+ L D+ + T +R L + L P+ + ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + + D Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFD- 365 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGT 425 Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 G+D+Y YA SF +AP VTK QR IGKV Sbjct: 426 WHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493 ELALGY GG AF A+ ++L A + P ++A W + NH P Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMA--AQAALPPLLLQEATELLEWTKANHRPTFG 543 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L A I G A + + Y Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597 Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YESKRYRK 675 +E+ RYRK Sbjct: 718 FETHRYRK 725 >gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53] gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53] Length = 726 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 285/728 (39%), Positives = 379/728 (52%), Gaps = 69/728 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C + IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DVT R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297 L L G+ L D+ + T +R L + L P+ + ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + + D Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFD- 365 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGT 425 Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 G+D+Y YA SF +AP VTK QR IGKV Sbjct: 426 WHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493 ELALGY GG AF A+ ++L A + P ++A W + NH P Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMA--AQAALPPLLLQEATELLEWTKANHRPTFG 543 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L A I G A + + Y Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597 Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YESKRYRK 675 +E+ RYRK Sbjct: 718 FETHRYRK 725 >gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 276/727 (37%), Positives = 377/727 (51%), Gaps = 67/727 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC +P L AL + Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PGVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DV R++ KRL Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG +D L + V+ + L Q E+LT G V ++ + Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L G+ L D+ + T R + + L ++ + R +AS ++ K L+ Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVD-DPALPETVRELLSIRRQASSTSTAKYQALLHCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TSITSDPD 355 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + + D D Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFD-D 366 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET----------- 404 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCW 426 Query: 405 -----------------------------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 G+D+Y YA SF +AP V+K+QR IGKV Sbjct: 427 HTGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQ 486 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAI 494 ELALGY GG AF A+ ++L A + P ++A W + NH P + Sbjct: 487 ELALGYGGGVGAFAAFAALYHIDLEAMA--AQAVFPPLLLQEATELLEWTKANHRPTFDL 544 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 D AC+ K+AWR H ++ W L A I + + + ++ Sbjct: 545 SDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETT-----HTCCGITVQYR 598 Query: 555 KNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRD 608 + L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD Sbjct: 599 RAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRD 658 Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGY 668 +LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+ Sbjct: 659 VLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGF 718 Query: 669 ESKRYRK 675 ++ RYRK Sbjct: 719 DTYRYRK 725 >gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 284/728 (39%), Positives = 380/728 (52%), Gaps = 69/728 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE +LFA+ D PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F +Y + DV R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297 L L G+ L D+ + T +R L + L P+ + ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + + D Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFD- 365 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL+AF Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGT 425 Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 GED+Y YA SF +AP VTK QR IGKV Sbjct: 426 WHSGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493 ELALGY GG AF A+ ++L A + P ++A +W + NH P Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANHRPTFG 543 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L A I G A + + Y Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597 Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YESKRYRK 675 +E+ RYRK Sbjct: 718 FETHRYRK 725 >gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 280/728 (38%), Positives = 381/728 (52%), Gaps = 69/728 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DV R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L P+ + ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + + D Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFD- 365 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGT 425 Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 G+D+Y YA SF +AP VTK+QR IGKV Sbjct: 426 WHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 485 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493 ELALGY GG AF A+ ++L A + P ++A +W + N P Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFG 543 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L A I + + + M+ Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQY 597 Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 598 SRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YESKRYRK 675 +++ RYRK Sbjct: 718 FQTHRYRK 725 >gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 726 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 284/728 (39%), Positives = 381/728 (52%), Gaps = 69/728 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DV R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E LW+LDQTINDRG VD LA V+ + L E+LT G V ++ + Sbjct: 189 SGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L P+ + ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + + D Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFD- 365 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGT 425 Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 G+D+Y YA SF +AP VTK+QR IGKV Sbjct: 426 WHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 485 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493 ELALGY GG AF A+ ++L A + P ++A +W + N P Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFG 543 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L F T G A + + Y Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ--FAATDAIGHPETAHTCCGITVQY--- 597 Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D+LA M AGY IVLTVHDE++ E D FNA+ L LM + P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YESKRYRK 675 +++ RYRK Sbjct: 718 FQTHRYRK 725 >gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 282/728 (38%), Positives = 379/728 (52%), Gaps = 69/728 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ D PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F +Y + DVT R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L P+ + ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 + DGRLRGTLQF GASRTGRW+G + P NLPRP+ S + I + + D Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFD- 365 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGT 425 Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 G+D+Y YA SF +AP VTK QR IGKV Sbjct: 426 WHSGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKV 485 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493 ELALGY GG AF A+ ++L A + P + A +W + N P Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQQAMEALQWTKANQRPTFG 543 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L A I G A + + Y Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597 Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 598 SRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YESKRYRK 675 +E+ RYRK Sbjct: 718 FETHRYRK 725 >gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 712 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 272/715 (38%), Positives = 369/715 (51%), Gaps = 69/715 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ D PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F +Y + DVT R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEA 297 L L E G+ L D+ + T +R L + L P+ + ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVVLPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + + D Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFD- 365 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------ 402 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL+AF Sbjct: 366 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGT 425 Query: 403 ----------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 G+D+Y YA SF +AP VTK+QR IGKV Sbjct: 426 WHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 485 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493 ELALGY GG AF A+ ++L A + P + A +W + NH P Sbjct: 486 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQQAVEALQWTKANHRPTFG 543 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L A I G A + + Y Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY--- 597 Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 598 SRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662 D+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P +G P Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712 >gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407] Length = 598 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/600 (39%), Positives = 336/600 (56%), Gaps = 37/600 (6%) Query: 100 ARS-NGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLYDR-NKPNHREAWR 155 ARS G AL + E L + K + EGK LI FCK R H E WR Sbjct: 11 ARSPGGSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWR 70 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDV 213 F Y D+ RE++KRL + + EL W+ DQ INDRG C+DV LA VD Sbjct: 71 RFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQ 130 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 E+ +L + + +T G V ++ + L + G+ L D+ +T +R ++ + L Sbjct: 131 EQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAV 189 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ R++AS ++ K L++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS Sbjct: 190 KELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPS 249 Query: 334 RSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 E++D+ I L + +++ S +R C+IA GKKLVV+DL+ IE R+LAW Sbjct: 250 LKQEQIDEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAW 309 Query: 392 MAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 +AGE+WKL AF TG DLY YA++F++AP V K R IGKVMEL LGY GG Sbjct: 310 LAGEEWKLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVS 369 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI----EDLFIGTA 502 AF A GL+L+ A+ N + +A++ W E+ + E +FI A Sbjct: 370 AFITFALVYGLDLDGLANAALPNIPRDVIREAKS---WYDESVKRKSTYGLSERVFI--A 424 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLIL 560 C+ +K+ WR+ H + W EL E T+ + IA ++ + Y+K +D L + Sbjct: 425 CDSLKRLWRRAHPATCDFWYEL----ECTV---RTAIATPQKTLYCGYLKIRRDGAWLRI 477 Query: 561 MLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 LPSGR++ Y N +Y+ N+ +R+ R TYGGKL EN+ QA +RD+LA M Sbjct: 478 QLPSGRAVCYPSPVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMP 537 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY IVLTVHDE++ E+PDT++FN L L+++NP WA +PL A G+E+ YRK Sbjct: 538 LIEDAGYSIVLTVHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597 >gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] Length = 704 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 364/716 (50%), Gaps = 57/716 (7%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 A L++D ET S DL + G +YAE +LFA+ D P +WDC + M L A+ Sbjct: 3 APLWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTAEE-MHDELYHAM 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVLARSNGLPSALKAVGEALKL 118 ++ D AHN++F+RT+ +P RW C++ +A S+ LP L + LK+ Sbjct: 62 DDADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKV 121 Query: 119 SSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K+ +GK+L+ F + + R + H W F +Y D+T RE +R+ Sbjct: 122 PADMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRM 181 Query: 176 EPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + + W+LDQ IN RG+ VD AL + E+ ++ L+ G + Sbjct: 182 PAWNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQFTPG 241 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + EK + +L G L++ T Q V+ + L ++ + +++++ K Sbjct: 242 Q-REKFRVYLGQRLGYELDNTQAGTFQ-VMLRDPGLPADVREMIELAIASNKTSTAKYAA 299 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITS 352 L A++ DGR RG LQF GASRT RW+G +F PQNLP R S E ++ I HL + Sbjct: 300 LDPAVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHA 359 Query: 353 -DPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TG 405 D L ++ + +R CV+A+ GKKLVVADL+ IE RVLAW+A E+WKLKAF TG Sbjct: 360 LFFDNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTG 419 Query: 406 EDLYVTTYARSFNVAPAQVTKDQR-AIGKVMELALGYQGGAKAFQKMASTTGLNL----N 460 DLY T P V K R A GKV +LA GYQGG +Q A + GL + + Sbjct: 420 PDLYNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWD 479 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG----TACERVKKAWRQKHSR 516 T +V + WE N W HP+ +E L I A E K AWR +H Sbjct: 480 TIQQMVPAQHVAKAWE---NLASW---GHPQ--LESLEIDEIEWVASETCKLAWRARHPA 531 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK----KDKNNLILMLPSGRSLVYRD 572 S+ W L A + I N ++ P + ++ + + L++ LPSGR L Y + Sbjct: 532 TSKFWYALGGAAKDAIRNPGSVFTAG----PFIKLRTVSHRGQKWLVVRLPSGRFLTYFE 587 Query: 573 ---VGNNR----------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 VG R S TTRQ R +T+GGK+T N Q ++RDILA M A Sbjct: 588 PHIVGQGRDETIAYWGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAEN 647 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 GY VL+VHDE + E PDTD+F A+ L ++ +NP+WA LPL A G+E+ RY+K Sbjct: 648 RGYLPVLSVHDEALTEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703 >gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H] Length = 726 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 260/730 (35%), Positives = 363/730 (49%), Gaps = 59/730 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M+ LF+DFET S DL K G YAE V++ + FDD PV++WDC + MP L Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 AL N+ + +V HN S F+R ++K C+ DIP+ I T++ A + LP +L A+ Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L +S+ K + GK LI RF K R H + W LF +Y D+T R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+F +L + E E + LDQ INDRG+ VDVALA + V+ + +L +E + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ L + + ++T +L+ + A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 K N L+ +SD R RG +Q+ GA RT R++G F PQNL R +ELD+ I+ L Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356 Query: 348 TSITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTK---DQRAIGKVMELALGYQGGAKAFQKMASTTGLNL---- 459 D+Y T + F + P + K D R IGK EL LGY GG AF + A GL+L Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMT 476 Query: 460 ----NTFA-HLVKTNSAPEEW---EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 TF H+ + EW ++A+ R + + I D + C+ +K+ WR Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536 Query: 512 QKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNN-------LILMLP 563 + H W ++ A I N GK A R ++ D N L + LP Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596 Query: 564 SGRSLVYRDVGNNRSYL------------------NTTTRQLTREYTYGGKLTENIVQAV 605 SGR + Y VG + S N TRQ +YTY GKL EN QA+ Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 RD+LA ++N GY IVL VHDEI+CETPD E+N + L LM P WA+G PL A Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716 Query: 666 EGYESKRYRK 675 EG E KRY K Sbjct: 717 EGAEMKRYAK 726 >gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G] Length = 726 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 260/730 (35%), Positives = 363/730 (49%), Gaps = 59/730 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M+ LF+DFET S DL K G YAE V++ + FDD PV++WDC + MP L Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 AL N+ + +V HN S F+R ++K C+ DIP+ I T++ A + LP +L A+ Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L +S+ K + GK LI RF K R H + W LF +Y D+T R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+F +L + E E + LDQ INDRG+ VDVALA + V+ + +L +E + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ L + + ++T +L+ + A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 K N L+ +SD R RG +Q+ GA RT R++G F PQNL R +ELD+ I+ L Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356 Query: 348 TSITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTK---DQRAIGKVMELALGYQGGAKAFQKMASTTGLNL---- 459 D+Y T + F + P + K D R IGK EL LGY GG AF + A GL+L Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476 Query: 460 ----NTFAHLVKTNSA-PEEW---EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 TF + +A EW ++A+ R + + I D + C+ +K+ WR Sbjct: 477 KTMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536 Query: 512 QKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNN-------LILMLP 563 + H W ++ A I N GK A R ++ D N L + LP Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596 Query: 564 SGRSLVYRDVGNNRSYL------------------NTTTRQLTREYTYGGKLTENIVQAV 605 SGR + Y VG + S N TRQ +YTY GKL EN QA+ Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 RD+LA ++N GY IVL VHDEI+CETPD E+N + L LM P WA+G PL A Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716 Query: 666 EGYESKRYRK 675 EG E KRY K Sbjct: 717 EGAEMKRYAK 726 >gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3] gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2] Length = 726 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 258/730 (35%), Positives = 361/730 (49%), Gaps = 59/730 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M+ LF+DFET S DL K G YAE V++ + FDD V++WDC MP L Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 AL N+ + +V HN S F+R ++K C+ DIP+ I T++ A + LP +L A+ Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L +S+ K + GK LI RF K R H + W LF +Y D+T R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+F +L + E E + LDQ INDRG+ VDVALA + V+ + +L +E + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ L + + ++T +L+ + A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 K N L+ +SD R RG +Q+ GA RT R++G F PQNL R +ELD+ I+ L Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356 Query: 348 TSITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTK---DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y T + F + P + K D R IGK EL LGY GG AF + A GL+L A Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476 Query: 464 ---------HLVKTNSAPEEW---EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 H+ + EW ++A+ R +++ I D + C+ +K+ WR Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWR 536 Query: 512 QKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNN-------LILMLP 563 + H W ++ A I N GK A R ++ D N L + LP Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596 Query: 564 SGRSLVYRDVGNNRSYL------------------NTTTRQLTREYTYGGKLTENIVQAV 605 SGR + Y VG + S N TRQ +YTY GKL EN QA+ Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 RD+LA ++N GY IVL VHDEI+CETPD E+N + L LM P WA+G PL A Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716 Query: 666 EGYESKRYRK 675 EG E KRY K Sbjct: 717 EGAEMKRYAK 726 >gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2] gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2] gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 993 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/614 (37%), Positives = 340/614 (55%), Gaps = 32/614 (5%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK ++ Sbjct: 5 LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 +++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL + + ++S K Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 + EGK LI+ CK R H E W+ F +Y D+ REI++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 ++ E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L+++ Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 +++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L + D Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD- 361 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLY 409 D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY Sbjct: 362 DIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLY 421 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 YAR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + Sbjct: 422 KLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPH 481 Query: 470 SAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 P +A ++ + E + + E +F+ C+ +K+ WR H + W ++ A Sbjct: 482 IPPGVKREATSWYQKSVETDKTYGLSEKIFVN--CDSLKRMWRNAHPQTVSFWYDIEDAV 539 Query: 529 EQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLNTT- 583 +Q I++ G A RK + +++DK L + LPSGRSL Y R +Y+ T Sbjct: 540 KQAIQSPGIAFKCRK------LSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNP 593 Query: 584 -TRQLTREYTYGGK 596 +R+ R TYGGK Sbjct: 594 YSRKWERLKTYGGK 607 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/77 (57%), Positives = 54/77 (70%) Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENI QA +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N WA Sbjct: 916 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 975 Query: 659 KGLPLKAEGYESKRYRK 675 LPL A G+E+ RYRK Sbjct: 976 WDLPLSANGFETYRYRK 992 >gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1] gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1] Length = 993 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 231/617 (37%), Positives = 341/617 (55%), Gaps = 38/617 (6%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK L++ Sbjct: 5 LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 +++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL + + ++S K Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 + EGK LI+ CK R H E W+ F +Y D+ REI++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 ++ E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L+++ Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIN-DPDIPPALRELLSVRLQSCTTSTSKYKALLKS 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 +++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L + D Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD- 361 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLY 409 D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Sbjct: 362 DIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLY 421 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 YAR+FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 422 KLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPN 481 Query: 470 SAPEEWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELH 525 P +A RW Q E + + E +F+ C+ +K+ WR H + W ++ Sbjct: 482 IPPGVKREA---MRWYQKSVETDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIE 536 Query: 526 QAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLN 581 A +Q I++ G A RK + +++DK+ L + LPSGRSL Y R +Y+ Sbjct: 537 DAVKQAIQSPGIAFKCRK------LSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMG 590 Query: 582 TT--TRQLTREYTYGGK 596 T +R+ R TYGGK Sbjct: 591 TNPYSRKWERLKTYGGK 607 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/77 (57%), Positives = 54/77 (70%) Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENI QA +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N WA Sbjct: 916 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 975 Query: 659 KGLPLKAEGYESKRYRK 675 LPL A G+E+ RYRK Sbjct: 976 WDLPLSANGFETYRYRK 992 >gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU] gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF] gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS] Length = 735 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 256/737 (34%), Positives = 359/737 (48%), Gaps = 71/737 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDC----------VHDP 51 LF+DFET S DL K G YAE ++L ++ FDD P ++WD + + Sbjct: 5 LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64 Query: 52 VMPQVLKEALENTD---VTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 P L L V +V HN F+R +++ C LDIP T+V A + LP Sbjct: 65 SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124 Query: 108 ALKAVGEALKLSSQ--KMEEGKELIARFCKGETHEC---LYDRNKPNHREAWRLFGEYCK 162 +L + E L + + K + GK LI RFCK YDRN H + W+ F Y + Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRN--THPDEWKQFKHYAR 182 Query: 163 GDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 D+T REI+ ++ KE E+ LDQ INDRG+ VD LA V R +L + Sbjct: 183 NDITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQE 242 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 ++ G ++ + L L+ L H+ + ++T +L +A QV R Sbjct: 243 AAQATYGGGLTGADFLPLLRD---LAPAHHIPNAQKSTLGDLLDDADLPD-EARQVIEMR 298 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + A+ +A K L+ M++DGR RG LQ+ GA RT RW+G F PQNL R + L Sbjct: 299 LGAASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLA 358 Query: 341 QIITHLPTSITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + I L D +++ + VR C+I + GKKLVVAD + +E R LAW+AGE L Sbjct: 359 RGIEALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSAL 418 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F G D+Y T + F ++P V +R IGK EL LGY GG AF + GL+L Sbjct: 419 DTFRAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDL 478 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQ----ENHPEHAIEDLFIGTA--------CERVK 507 A + W A +M+ + P +D C+ +K Sbjct: 479 EEMAVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIK 538 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAII---ARKRRDVP--------LVYMKKDKN 556 + WR+ H R + W +L +A I+N A A+ R+D L K N Sbjct: 539 RMWRESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGN 598 Query: 557 NLILMLPSGRSLVYRDVG-------------NNRSYL-----NTTTRQLTREYTYGGKLT 598 L + LPSGR L Y +G R + N TRQ ++TYGGKL Sbjct: 599 WLKIELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLA 658 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 EN+ QA+ RDILA M+ AGY+I+L+VHDE++ ETPDT E+N + L LM P+WA Sbjct: 659 ENVTQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWA 718 Query: 659 KGLPLKAEGYESKRYRK 675 KG PLKAEG+E RY+K Sbjct: 719 KGFPLKAEGWEGYRYKK 735 >gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2] Length = 579 Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 218/583 (37%), Positives = 326/583 (55%), Gaps = 27/583 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK ++ Sbjct: 5 LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 +++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL + + ++S K Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 + EGK LI+ CK R H E W+ F +Y D+ REI++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 ++ E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L+++ Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDP 354 +++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L + D Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD- 361 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLY 409 D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY Sbjct: 362 DIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLY 421 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 YAR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + Sbjct: 422 KLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPH 481 Query: 470 SAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 P +A ++ + E + + E +F+ C+ +K+ WR H + W ++ A Sbjct: 482 IPPGVKREATSWYQKSVEKDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAV 539 Query: 529 EQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +Q I++ G A RK + +++DK L + LPSGRSL Y Sbjct: 540 KQAIQSPGIAFKCRK------LSVRRDKGWLRICLPSGRSLCY 576 >gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a] gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a] Length = 763 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 252/761 (33%), Positives = 364/761 (47%), Gaps = 93/761 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 LF+D ET S +DL K G YAE +++ + D+ V+ WDC P MP+ L++AL Sbjct: 7 LFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPRELRKAL 66 Query: 62 ENTD----VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 ++A+ F+R V++ + +D+P+ + T+++A + LP +L + L Sbjct: 67 RRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDMQCQVLG 126 Query: 118 LSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + ++ K + GK LI RFCK R + H E W F Y D+ RE++ R Sbjct: 127 VDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREVYWR 186 Query: 175 LEPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + + KE E+ +DQ INDRG+ VDV LA + V + +L +E G ++ Sbjct: 187 IPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERFGGKLTG 246 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + L L+ L + + ++T +L + + + R+ AS +A K N Sbjct: 247 NDFLPALRD---LAPAFTIHNAQKSTLNDLLE-DPDFPDEGKVLIEMRLGASSTASTKYN 302 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS------------------- 333 LV +++DGR RG LQ+ GA RT RW+G F PQNL R Sbjct: 303 PLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESDVA 362 Query: 334 ---RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 RSH + I + L + D ++ + VR C+I ++GKK VVAD + +E R LA Sbjct: 363 FWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRGLA 422 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---KDQRAIGKVMELALGYQGGAKA 447 W+AGE+ L F+ G D+Y T + F + P + KD R IGK EL LGY GG A Sbjct: 423 WIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYGGGVAA 482 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH----PEHAIED------- 496 F + A GL+L A ++K W A+ + + N P+ +D Sbjct: 483 FLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDERPTYIL 542 Query: 497 -LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-GKA----------------I 538 + C+ +K+ WR+ H + W EL A I N GKA I Sbjct: 543 PKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGKKALKI 602 Query: 539 IARKRRDVPLVYMKKDKNN-----LILMLPSGRSLVY------------RDVGNNRSYL- 580 + K + P ++D N L + LPSGR + Y D G R+ Sbjct: 603 VRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKKRTSTR 662 Query: 581 ------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 N TTRQ +YTYGGKLTENIVQA+ RDILA M AGY+IVL+VHDE++ Sbjct: 663 IKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVHDELIT 722 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E PDTD++ L LM P WAKG PL AEG RYRK Sbjct: 723 EVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763 >gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] Length = 681 Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 240/698 (34%), Positives = 358/698 (51%), Gaps = 71/698 (10%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLD 87 +++ + DD PV WD MP L EA++ D + F+R VLK Sbjct: 1 MIWTWAIDDGPVGTWDVTTGAPMPVELDEAIDAADEYWWQNGGMFDRVVLKHAAPEIYAR 60 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGE-THECLYD 144 +P H+W T+V A ++GLP L + E + + K +EG +LI FCK + L Sbjct: 61 MPEHKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRR 120 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQTINDRGYCVD 200 + H E W F Y D+T R + K + P + E LW+ DQ IN RG +D Sbjct: 121 ATRETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMD 180 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 V LA + +D + +L LT G V+ + +KL L E + L D+ ++T + Sbjct: 181 VELAEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLE 240 Query: 261 RVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 R + N P A+ ++ R+ A+ ++ K TL+ +++DGRLRG +QF GA RTGR Sbjct: 241 RRI--NDPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRV 298 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP----------------------- 356 + +F P N+PRP ++ ++ L + SD D Sbjct: 299 AHRLFQPGNMPRP-----DVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENV 353 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVT 411 + + ++ VR ++A +GK+L V+DL+ IE R AW+AGE+WKL+AF G DLY Sbjct: 354 IGLTANVVRGTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKL 413 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT-----FAHLV 466 YAR+F VA V K R +GKVMELAL Y+GG AF T ++L++ FA L Sbjct: 414 AYARAFGVAVEAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALD 473 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + PE +A W + + +D+FI AC+ +K+ WR+ H + S W EL Sbjct: 474 TVD--PEIVREARGMWEWAVKKRRTLGLPQDVFI--ACDILKRLWRRAHPQTSSYWPELR 529 Query: 526 QAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-----RDVGNNRSY 579 A I + GK + AR+ V +++D L + LPS R L Y D G SY Sbjct: 530 DAAILAISSPGKTVHARR------VILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEI-SY 582 Query: 580 L--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + N TR+ R TYGGK+ EN+ QAV+RD+L AGYDIVL++HDE++ E P Sbjct: 583 MGVNQYTRKWQRTKTYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAP 642 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 D D+++A L L+ + P+WA+G+PL A G+ + RY+K Sbjct: 643 DADDYSADELSSLIATAPAWAEGMPLAAAGFSAYRYKK 680 >gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1] Length = 698 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 244/695 (35%), Positives = 344/695 (49%), Gaps = 57/695 (8%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALE-----NTDVTIVAHN-SYFERTVLKACFNLD 87 A+ FDD PV++WDC + MP L AL N+ + +V HN S F+R ++K C+ D Sbjct: 8 AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR 145 IP+ I T++ A + LP +L A+ E L +S+ K + GK LI RF K R Sbjct: 68 IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127 Query: 146 -NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVA 202 H + W LF +Y D+T RE+F +L + E E + LDQ INDRG+ VDVA Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 LA + V+ + +L +E + G ++ L L+ L + + ++T + Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDL 244 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L+ + A + R+ A+ +A K N L+ +SD R RG +Q+ GA RT R++G Sbjct: 245 LADDDLPD-DASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGK 303 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDP-DPLQIISDCVRSCVIASEGKKLVVADL 381 F PQNL R +ELD+ I+ L D ++ + VRSC+I G K VVAD Sbjct: 304 GFQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADY 363 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK---DQRAIGKVMELA 438 + +E R LAW+AGE+ L F G D+Y T + F + P + K D R IGK EL Sbjct: 364 SNVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELG 423 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFA---------HLVKTNSAPEEW---EDAENFCRWMQ 486 LGY GG AF + A GL+L A H+ + EW ++A+ R + Sbjct: 424 LGYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGE 483 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRD 545 ++ I D + C+ +K+ WR+ H W ++ A I N GK A R Sbjct: 484 KDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGV 543 Query: 546 VPLVYMKKDKNN-------LILMLPSGRSLVYRDVGNNRSYL------------------ 580 ++ D N L + LPSGR + Y VG + S Sbjct: 544 KFSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGE 603 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 N TRQ +YTY GKL EN QA+ RD+LA ++N GY IVL VHDEI+CETPD Sbjct: 604 NQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLP 663 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+N + L LM P WA+G PL AEG E KRY K Sbjct: 664 EYNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698 >gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3] Length = 502 Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 210/512 (41%), Positives = 296/512 (57%), Gaps = 31/512 (6%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L++++++D Sbjct: 63 HIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358 GRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L + D D +Q Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N P Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPG 300 Query: 474 EWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +A RW Q E + + E +F+ C+ +K+ WR H + W ++ A + Sbjct: 301 VKREA---MRWYQKSVETDKTYGLSEKIFV--TCDALKRMWRNAHPQTVSFWYDIEDAVK 355 Query: 530 QTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLNTT-- 583 Q I++ G A RK + +++DK L + LPSGRSL Y R +Y+ T Sbjct: 356 QAIQSPGIAFKCRK------LSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPY 409 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +R+ R TYGGK+ ENI Q+ +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+ Sbjct: 410 SRKWERLKTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFS 469 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 A L L++ N WA LPL A G+E+ RYRK Sbjct: 470 AEGLSKLLSFNSDWAWDLPLSANGFETYRYRK 501 >gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 591 Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 216/546 (39%), Positives = 304/546 (55%), Gaps = 24/546 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ D PV +WD +P L++A+ + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 D + HNS+F+RTVL+ A L + RW T+V A ++GLP AL A+ E L + K Sbjct: 64 PDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE+ KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPKWN 183 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 K EL W+ DQ INDRG C+DV LA + VD E+ +L + + +T G V ++ + Sbjct: 184 YKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K +L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRMA-DPDLPSAVKELLAIRLQASTTSTSKYKSLMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRPS +++D+ I L + Sbjct: 303 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C++A EGKKLVV+DL+ IE R LAW+AGEQWKL AF TG DLY Sbjct: 363 IMELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YAR+FN++P V K QR IGKVMEL LG+ GG AF A GL+L+ A+ N Sbjct: 423 LAYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +A+N W E+ A E +FI AC+ +K+ WR+ H + W EL + Sbjct: 483 PRDVIREAKN---WYDESVKRKATYGLSERVFI--ACDSLKRLWRRAHPATCDFWYELER 537 Query: 527 AFEQTI 532 I Sbjct: 538 TVRAAI 543 >gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] Length = 655 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 250/718 (34%), Positives = 352/718 (49%), Gaps = 107/718 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ID+ G KY E D ++LFA+ F+D PV++ D +PQ + Sbjct: 1 MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 +AL + DV A N+ FER+ +K +L P +W CT++ A + GLPS+L VG+ALK Sbjct: 61 DALYDPDVIKTAFNANFERSAIKFGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKALK 120 Query: 118 L--SSQKMEEGKELIARFCKGETHECLYD---RNKPNH-REAWRLFGEYCKGDVTVTREI 171 L QKM+EGK LI FCK D RN P H E W F EYCK DV V REI Sbjct: 121 LEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVEREI 180 Query: 172 FKRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L +K EQ+LW LDQ INDRG D+ L + Q ++ + T + L L Sbjct: 181 RNLLNRYETKAEEQKLWQLDQHINDRGIDTDLIL---IKQAIECD-TNYTERLTKAAIKL 236 Query: 230 --VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRS 286 + + ++K W+ G ++ LT+T+ ++ K L + I++ R +++ Sbjct: 237 TGLENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAKT 296 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSH------- 336 ++ K +T+ A DGR+RG LQF GA+RTGRW+G + QNLP+ P + Sbjct: 297 SIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVRE 356 Query: 337 ---EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 EE++ + +P ++ S +R+ I EG + +V+D + IEARV+AW A Sbjct: 357 GKFEEVEFLFDSVPDTL----------SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFA 406 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKM 451 GEQW+L F T +Y + ++ F V + K + R GK+ ELALGY G A M Sbjct: 407 GEQWRLDVFSTHGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSM 466 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + PE + L K+WR Sbjct: 467 DRKKSI--------------------------------PEEELPGLV---------KSWR 485 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK---DKNNLILMLPSGRSL 568 + +++ W ++ +A ++ I R+R V L Y K D L + LPSGR L Sbjct: 486 NANPNITKFWWDVDKAAKKAI--------RERTTVNLQYGLKFIYDPGVLFIQLPSGRKL 537 Query: 569 VY---------RDVGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 Y G+ +Y + T++Q R TYG KL ENIVQA SRD L E M Sbjct: 538 SYIRPKIEPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRV 597 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 K GYDIV+ VHDE+V + P D + LM WA GLPLKA+GYE Y K Sbjct: 598 NKEGYDIVMHVHDEVVLDIP-KDRATVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654 >gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4] Length = 649 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 242/706 (34%), Positives = 356/706 (50%), Gaps = 89/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ Y+E D ++LFA+ DD VE+ D +P + Sbjct: 1 MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +A+ + V A+N+ FERT L F + +P +W CT V A GLP L V + LKL Sbjct: 61 KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKR 174 QKM+EGK LI F CK RN P H A W F +YCK DV V REI K+ Sbjct: 121 QGQKMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIRKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-ESLTYGLVS 231 LE PL + EQELW LDQ IND G +D L +N + ++ D+ + E++ + Sbjct: 181 LEVFPLPTMEQELWELDQKINDEGVVIDTNL---VNHAIKADKAFQDELIEEAVRLTGLE 237 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + +LK WL L+ GL ++ L + + ++S + P+ ++ R S+++V K Sbjct: 238 NPNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVE--NPEVKRLLELRRAMSKTSVKKY 294 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH------ 345 + ++ SD R+RG LQF GASRTGRW+G + NLPR S ++ + + Sbjct: 295 EAMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEA 354 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 L S D ++S +R+ I S+G + VVAD + IEARV+AW+AGE+W++ F++ Sbjct: 355 LEVLFESVSD---VLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSH 411 Query: 406 EDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 +Y + A+ F V + K R GK+ ELALGY G A +M + GL + Sbjct: 412 GKIYEASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMGALEMGLTEDEL 471 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV AWR+ + ++ +LW Sbjct: 472 PELV-----------------------------------------SAWREANPKIVKLWW 490 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---------RDV 573 + A + ++ KA++ + + + Y K L + LPSGRSL Y R Sbjct: 491 GIEAAAIKAVKE-KAVV-KMQHGLTFHYT---KGILFITLPSGRSLAYVRPKIGIDERFG 545 Query: 574 GNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 +Y T ++Q R TYGGKLTENI+QA++RD LA M+ +AGY I VHDE Sbjct: 546 KEQLTYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDE 605 Query: 632 IVCETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ + P SM + ++M + WA GLPL A+ +E+ Y+K Sbjct: 606 VILDVPIA---TGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648 >gi|332800352|ref|YP_004461851.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1] gi|332698087|gb|AEE92544.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1] Length = 652 Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 242/705 (34%), Positives = 350/705 (49%), Gaps = 84/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DLTKCG+ Y AED ++LF + F++ PVE+ D +P + Sbjct: 1 MTILSIDIETYSSVDLTKCGVYAYTQAEDFEILLFGYAFNNDPVEVIDLASGEQIPDEVT 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 A+ ++ V A N+ FERT L N +P W C+ A + GLP L V + L L Sbjct: 61 NAITDSAVIKTAFNANFERTCLAKYLNKPMPPEEWRCSQAHALTLGLPLNLAGVAKCLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 + QKM EGK LI F CK RN P+H RE W F YCK DV V R I KR Sbjct: 121 ADQKMSEGKALIRYFSIPCKPTKANGGRTRNLPHHDREKWETFKAYCKQDVVVERSIRKR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P++ KE +LW LDQ IND G VD L + + +L E LT GL + Sbjct: 181 LENYPMTDKELKLWSLDQKINDYGVRVDRQLVENAICCDGIHQKELMAEAIDLT-GL-EN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LKTWL + ++ L++ + +L NK P +V R S+++V K Sbjct: 239 PNSPAQLKTWLKGNHNIQVDSLSKANVEELL--NKINHPTVTRVLELRQDMSKTSVRKYE 296 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII------THL 346 + AM DGR+RG LQ+ GA+RTGRW+G + QNLPR + +L + + L Sbjct: 297 AMDRAMGGDGRIRGLLQYYGANRTGRWAGRLVQVQNLPRNNMKDLDLARKLLLAGDYESL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ + S G + +++D + IEARV+AW+AGE+W + F+ Sbjct: 357 ELLFDSVPD---VLSQLIRTAFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHG 413 Query: 407 DLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 +Y T ++ F V + K R GKV LA GYQG A + M + LN+ Sbjct: 414 KIYEMTASKMFGVPMELIVKGNPEYELRQKGKVAVLACGYQGSVGALKAMGA---LNMG- 469 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 +K + P + AWR+ + + +LW Sbjct: 470 ----LKEDELPA--------------------------------IVAAWRESNPNIVKLW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY------RDVGN 575 ++ A + +++ +I + L + K L + LPSGR+L Y D Sbjct: 494 WDVEDAAIRAVKDRTSITMQ----YGLKFYYK-SGVLFIRLPSGRNLAYVKPRIELDTRF 548 Query: 576 NRSYLNTTTRQLTREY----TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 N+ L L ++ TYGGKLTENI+QA++RD LAE ++ KAGY I VHDE Sbjct: 549 NKDKLTYEGIMLGNKWARIDTYGGKLTENIIQAIARDCLAESLLRLDKAGYKIAFHVHDE 608 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +V + P F + + +M+ + +WAKGLPL+AEG+E+ Y K Sbjct: 609 VVLDVPQG--FGSLKEVEEIMSQDINWAKGLPLRAEGFETNYYMK 651 >gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26] gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55] gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34] gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79] gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291] gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58] gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291] Length = 652 Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 246/719 (34%), Positives = 359/719 (49%), Gaps = 112/719 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G+ +Y + + ++LFA+ FD+ V++ D V+D +P+ + Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A N+ FERT + N+++ + W CT++ A + GLP +L +V +ALK Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 S--SQKMEEGKELIARFC---------KGETHECLYDRNKPNH-REAWRLFGEYCKGDVT 166 + QKM+EGK LI FC KG T RN P H E W F EYCK DV Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRT------RNLPIHDMEKWNKFKEYCKQDVV 174 Query: 167 VTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V REI +L + E+E LWYLDQ IND G VD L + KL +E Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 +T GL ++ +LK WL + G + LT+ + +L +++ R S Sbjct: 235 IT-GL-NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVD--DENVVRILELRKLMS 290 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELD--- 340 ++++ K + A +D R+RG LQF GA+RTGRW+G + QNLP ++H E+LD Sbjct: 291 KTSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHIEDLDLAR 347 Query: 341 --------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +I L S+ PD ++S +R+ I SEG + +V+D + IEARV+AW Sbjct: 348 NLLKEGDFDLIELLYDSV---PD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWF 401 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQK 450 AGE+W+L F + +Y + + F V + K R GK+ ELALGY G A Sbjct: 402 AGEKWRLDVFNSHGKIYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTS 461 Query: 451 MAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 M + GL+ LV T Sbjct: 462 MGAIKMGLDEEELQPLVTT----------------------------------------- 480 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 WR + +++ W ++ +A ++ I++ I + + + +Y + L + LPSGR L Sbjct: 481 WRNANPNITKFWWDVDKAAKKAIKD--RTIVKLQHGIKFIY---NPGVLFIELPSGRRLS 535 Query: 570 YRD---------VGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 Y G+ +Y + T++Q R TYG KL ENIVQA +RD L E M N T Sbjct: 536 YLRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVT 595 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY IV+ VHDE+V D D+ S+ + +M SWAKGLPLKA+GYE Y+K Sbjct: 596 DAGYSIVMHVHDELVI---DVDKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] Length = 658 Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 247/711 (34%), Positives = 347/711 (48%), Gaps = 98/711 (13%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 TL ID ET S +D+ G KY E D ++LFA+ F+D PV++ D + +P + A Sbjct: 7 TLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVFYA 66 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL-- 118 L + ++ A N+ FER +K + P +W CT+V A + GLPS+L VG+ALK Sbjct: 67 LTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKFEE 126 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QKM+EGK LI F CK RN P H E W F EYCK DV V REI Sbjct: 127 DKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIRNL 186 Query: 175 LEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL--V 230 L +K EQ+LW LDQ INDRG D+ L + Q ++ + T + L L + Sbjct: 187 LNRYETKVEEQKLWQLDQHINDRGIGTDLIL---IKQAIECD-TNYTERLTKAAIELTGL 242 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAVL 289 + ++K W+ G ++ LT+T+ ++ L + I++ R +++++ Sbjct: 243 ENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAKTSIK 302 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQI------ 342 K +T+ A DGR+RG LQF GA+RTGRW+G + QNLP ++H +LD Sbjct: 303 KYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHLPDLDNARNFVRE 359 Query: 343 --ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + S PD L S +R+ I EG + +V+D + IEARV+AW AGEQW+L Sbjct: 360 GKFQEVEFLFDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLD 416 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 F T +Y + ++ F VA + K + R GK+ ELALGY G A M + Sbjct: 417 VFSTHGKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSI- 475 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 PE + L K+WR + ++ Sbjct: 476 -------------------------------PEEELPGLV---------KSWRNANPNIT 495 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK---DKNNLILMLPSGRSLVY----- 570 + W ++ +A ++ I R+R V L Y K D L + LPSGR L Y Sbjct: 496 KFWWDVDKAAKKVI--------RERTTVNLQYGLKFIYDPGVLFIQLPSGRKLSYIRPKI 547 Query: 571 ----RDVGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 G+ +Y + T++Q R TYG KL ENIVQA SRD L E M KAGYDI Sbjct: 548 EPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDI 607 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V+ VHDE+V + P D + LM WA GLPLKA+GYE Y+K Sbjct: 608 VMHVHDEVVLDIP-KDRATVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657 >gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] Length = 649 Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 238/709 (33%), Positives = 354/709 (49%), Gaps = 95/709 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLT CG+ Y A D ++LF + +DD PVEL D +P + Sbjct: 1 MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 A+E+ +V A N+ FER L N + W CT + A GLP L VG ALKL Sbjct: 61 NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK GK+LI F CK RN P+H E W+ F +YC DV V RE+ ++ Sbjct: 121 KVQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVRRK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE---RTKLDQELESLTYGL 229 +E P+ KE +LW LDQ IND G VD+AL +NQ V + ++L+ E ++LT Sbjct: 181 IERYPIPEKELKLWLLDQKINDTGVLVDMAL---VNQAVKCDTQYSSRLEVEAKTLTK-- 235 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + + +LK WL E GL +E L++ Q +L+ + ++ R ++S++ Sbjct: 236 LDNPNSVAQLKEWL-KEQGLEVESLSKQAVQNLLTDADG---EIERLLTLRQEMAKSSIA 291 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL--- 346 K + ++ D R+RG QF GA+RTGRW+G +F QNLP+ E+ +++ Sbjct: 292 KYAAVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRF 351 Query: 347 -PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + + P+ ++S+ +R+ +I +G + +VAD + IEARVLAW+A E W L F+ Sbjct: 352 KELELLYESVPI-VLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGH 410 Query: 406 EDLYVTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNL 459 +Y T +R F V ++ K + RA GKV LA GYQGG A + M A GL+ Sbjct: 411 GKIYEQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGADKMGLS- 469 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 T + + +AWR + R+ Sbjct: 470 ----------------------------------------DTELDDIVRAWRSANQRIVR 489 Query: 520 LWNELHQAFEQTIENGKAIIARKRRD---VPLVYMKKDKNNLILMLPSGRSLVY------ 570 W ++ +A A++A + R+ V ++ K + L + LPSGR L Y Sbjct: 490 FWYDVEKA---------AVLAVREREPQRVGILRFKVENGILFITLPSGRRLAYIRPKIE 540 Query: 571 RDVGNNRSYLN----TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 +D+ ++ L +Q R+ TYGG+L ENIVQ +RD LAE M+ GY IV Sbjct: 541 KDLRFDKDGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVG 600 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDEI+ E + + L +M WA GLPL+A+G+E+ Y+K Sbjct: 601 HVHDEIITEM-RKGQGSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648 >gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 651 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 246/700 (35%), Positives = 338/700 (48%), Gaps = 83/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L G+ +YA D ++LFA+ D V++ D +P + Sbjct: 9 MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +ALE+ V A N+ FER L A + W C++V A G+P L V +AL L Sbjct: 69 DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 ++KM EGK LI F K +RN P H + W F YCK DV V I KR Sbjct: 129 ETEKMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAITKR 188 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ ++E + ++ DQ INDRG +D LA + R + + LT V + Sbjct: 189 LHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELTR--VDN 246 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +L WL + GL ++ L + L L +V R ++S+V K Sbjct: 247 PASVTQLLAWLRSQ-GLQIDSLAKADVAAALEG--ALEGDVAEVLALRQEMAKSSVKKYE 303 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL--DQIITH----L 346 ++ DGR G LQF+GA RTGRW+G + QNLPR S S E D + T L Sbjct: 304 RMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADML 363 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 T S P Q++S+ +R+ +A G + +VAD + IEAR +AW+AGEQW L FE G Sbjct: 364 ETLWGSAP---QVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGG 420 Query: 407 DLYVTTYARSF-NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTFAH 464 D+Y T R F V QRA KV LA GYQGG A + M GL+ + A Sbjct: 421 DIYCETGTRMFRQVVEKHSPLRQRA--KVAVLACGYQGGVGALKTMGGEKLGLSEDEMAD 478 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 +V AWR + ++++LW ++ Sbjct: 479 IV-----------------------------------------AAWRAANPKIAQLWWDI 497 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNT 582 + A I++G A R V + + DK LI+ LPSGR LVY +G NR + Sbjct: 498 NAAAIAVIKDGGA------RAVGRIRLAHDKGALIITLPSGRPLVYPSPRIGENRFGGES 551 Query: 583 TT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 T R+ R TYGGKLTENIVQA +RDILA + ++GY +V+ +HDE+V E Sbjct: 552 ITHMGVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTE 611 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P+ + L LM+ P WA GLPL AEG+ES YRK Sbjct: 612 VPE-GRGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650 >gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932] gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196] gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196] Length = 652 Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 241/718 (33%), Positives = 360/718 (50%), Gaps = 110/718 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G+ +Y + + ++LFA+ FD+ V++ D V+D +P+ + Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A N+ FERT + N+++ + W CT++ A + GLP +L +V +ALK Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 S--SQKMEEGKELIARFC---------KGETHECLYDRNKPNH-REAWRLFGEYCKGDVT 166 + QKM+EGK LI FC KG T RN P H E W F EYCK DV Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRT------RNLPIHDMEKWNKFKEYCKQDVV 174 Query: 167 VTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V REI +L + E+E LWYLDQ IND G VD L + KL +E Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 +T GL ++ +LK WL + G + LT+ + +L +++ R S Sbjct: 235 IT-GL-NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVD--DENVVRILELRKLMS 290 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELD--- 340 ++++ K + A +D R+RG LQF GA+RTGRW+G + QNLP ++H E+LD Sbjct: 291 KTSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHIEDLDLAR 347 Query: 341 --------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +I L S+ PD ++S +R+ I SEG + +V+D + IEARV+AW+ Sbjct: 348 NLLKEGDFDLIELLYDSV---PD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWL 401 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQK 450 AGE+W+L F + +Y + ++ F + + K + R GK+ EL+ GY G A Sbjct: 402 AGEKWRLDVFNSHGKIYEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALIS 461 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 M + +K EE + + AW Sbjct: 462 MGA------------IKMGLKEEE----------------------------LQPIVTAW 481 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + +++ W ++ +A ++ I++ I + + +Y + L + LPS R L Y Sbjct: 482 RNANPNITKFWWDVDKAAKKAIKD--RTIVEIQHGIKFIY---NPGVLFIELPSSRRLSY 536 Query: 571 RD---------VGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 G+ +Y + T++Q R TYG KL ENIVQA +RD L E M N T Sbjct: 537 LRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTD 596 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY IV+ VHDE+V D D+ S+ + +M SWAKGLPLKA+GYE Y+K Sbjct: 597 AGYSIVMHVHDELVI---DVDKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] Length = 650 Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 242/709 (34%), Positives = 336/709 (47%), Gaps = 94/709 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DLTK G+ YAE D ++LF + FDD PV+L D +P + Sbjct: 1 MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + ++ A N+ FERT + FN +P +W CT V A + GLP L V + L L Sbjct: 61 NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK GK LI F CK RN P H + W F YCK DV V R+I K Sbjct: 121 KQQKDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIRKT 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+ E +LW LDQ IND G VD L + KL + LT GL + Sbjct: 181 LERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLT-GL-DN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + + +LK WL GL +E L + + +L + T + Q+ R ++++V K Sbjct: 239 PKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTESSTVK--QMLELRQEMAKTSVKKYL 296 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS-------------RSHEEL 339 + A DGR+RG LQF GA+RTGRW+G + QNLPR S +E L Sbjct: 297 AMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIKDLDQARQLLKAGDYEML 356 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + +PT ++S +R+ + EG + +VAD + IEARV+AW+A E+W++ Sbjct: 357 ELLFESVPT----------VLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRM 406 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGL 457 F T +Y + + F+V ++TK R GKV ELALGYQGG A M + Sbjct: 407 DVFRTHGKIYEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMGA---- 462 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++E E + L K WRQ + Sbjct: 463 ---------------------------LKEGLTEEELPGLV---------KLWRQSSPNI 486 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVG 574 + W + A + ++ + + +Y + L + LPSGR L Y R Sbjct: 487 VKFWYDTEAAAIKAVKEKTTV--ELHHGIHFIY---ESGILFIRLPSGRRLAYIKPRIQN 541 Query: 575 NNR------SY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 N R +Y T+Q R YTYGGKL ENIVQAV+RD LAE ++ AGY V+ Sbjct: 542 NPRLDKPALTYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVM 601 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE V E P + +M WA GLP++A+G+ES Y+K Sbjct: 602 HVHDESVMEMPH-GVGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649 >gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255] Length = 652 Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 241/718 (33%), Positives = 358/718 (49%), Gaps = 110/718 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G+ +Y + + ++LFA+ FD+ V++ D V+D +P+ + Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A N+ FERT + N+++ + W CT++ A + GLP +L +V +ALK Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 S--SQKMEEGKELIARFC---------KGETHECLYDRNKPNH-REAWRLFGEYCKGDVT 166 + QKM+EGK LI FC KG T RN P H E W F EYCK DV Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRT------RNLPIHDMEKWNKFKEYCKQDVV 174 Query: 167 VTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V REI +L + E+E LWYLDQ IND G VD L + KL +E Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 +T GL ++ +LK WL + + LT+ + +L ++ R S Sbjct: 235 IT-GL-NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVD--DENVVRTLELRKLMS 290 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELD--- 340 ++++ K + A +D R+RG LQF GA+RTGRW+G + QNLP ++H E+LD Sbjct: 291 KTSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHIEDLDLAR 347 Query: 341 --------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +I L S+ PD ++S +R+ I SEG + +V+D + IEARV+AW+ Sbjct: 348 NLLKEGDFDLIELLYDSV---PD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWL 401 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQK 450 AGE+W+L F + +Y + ++ F V + K + R GK+ EL+ GY G A Sbjct: 402 AGEKWRLDVFNSHGKIYEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALIS 461 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 M + +K EE + + AW Sbjct: 462 MGA------------IKMGLKEEE----------------------------LQPIVTAW 481 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + +++ W ++ +A ++ I++ I + + +Y + L + LPS R L Y Sbjct: 482 RNANPNITKFWWDVDKAAKKAIKD--RTIVEIQHGIKFIY---NPGVLFIELPSSRRLSY 536 Query: 571 RD---------VGNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 G+ +Y + T++Q R TYG KL ENIVQA +RD L E M N T Sbjct: 537 LRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTD 596 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY IV+ VHDE+V D D+ S+ + +M SWAKGLPLKA+GYE Y+K Sbjct: 597 AGYSIVMHVHDELVI---DVDKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] Length = 653 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 241/703 (34%), Positives = 344/703 (48%), Gaps = 79/703 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ID+ K G KYA+ D +++FA+ +D PV++ D +PQ + Sbjct: 1 MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A+N+ FE L F PI +W CT V G + L AVGEAL + Sbjct: 61 EALADPAVVKHAYNAAFEWYCLNRFFY--SPIEQWRCTQVHGLYCGYTAGLGAVGEALGI 118 Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 +K+ G LI FC K + R P+H E W+LF EYC GDV EI Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ +E +LW+LDQ IN RG D+ + + + ++L E SLT GL Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLT-GL- 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + +++L WL ETG +E+L + T +++ +K +A +V R S+++ K Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLI--DKLDEGKARRVLEIRQELSKTSTKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE------LDQIIT 344 + A SD R+RG LQF GA+RTGRW+G + QNLPR S E +++ + Sbjct: 295 YAAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVE 354 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 L + PD L S +R+ + GK+L VAD + IEARV+AW+AGEQW+L F T Sbjct: 355 MLKFVYGNVPDTL---SQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFAT 411 Query: 405 GEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +Y + ++ F V Q+ K D R GKV ELALGYQGG A M + Sbjct: 412 HGKIYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMGA--------- 462 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + E E E R WR + R+ +LW Sbjct: 463 -----LDQGLTEAELPEIVTR--------------------------WRNANRRIVDLWY 491 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-------RDVGN 575 + A + +E G+ + R + ++ + LPSGR L Y D G Sbjct: 492 SMEAAAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGK 551 Query: 576 NRSY---LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ T+++ T TYGGKL EN VQA++RD LA +M GY IVL VHDE+ Sbjct: 552 PALHYWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEV 611 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E DE + + +M WA GLPLK +G+ + Y K Sbjct: 612 GAELSSADELD--RMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652 >gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] Length = 646 Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 237/707 (33%), Positives = 355/707 (50%), Gaps = 98/707 (13%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S +D+TK G+ Y AED ++LFA+ ++D + + D +PQ + E L Sbjct: 2 LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 N + A N+ FERT L N +P +W C+ V A + G +L+ ++L L Q Sbjct: 62 TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121 Query: 122 KMEEGKELIARF---CK-GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE 176 KM+EGK LI F CK GE RN P H E W++F YCK DV V R + K+LE Sbjct: 122 KMKEGKALIRYFSMPCKRGER-----SRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLE 176 Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 P++ KE ELW LDQ IND G +D L H+ + ++K +E +LT GL + + Sbjct: 177 KYPVTKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALT-GLENPNS 235 Query: 235 CLEKLKTWLFLET-GLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLKLN 292 ++ LK W LET G+ E L++ + +L K++ + ++ V R S+++V K Sbjct: 236 QVQ-LKGW--LETKGVKAESLSKEKVRELL---KEVEDEKVKRVLKLRQELSKTSVKKYE 289 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH------L 346 + A+ D R+RG L+F GA+RTGRWSG + QNLPR + + E +++ L Sbjct: 290 AIKRAVCKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEML 349 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S P +++S +R+ I + + +V+D + IEARV+AW+AGE+W + F+ Sbjct: 350 EVLFYSVP---EVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSG 406 Query: 407 DLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAST-TGLNLN 460 +Y +R F V ++ K R GKV LA GYQG A M + GL Sbjct: 407 KVYEMAASRMFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVKMGLKEE 466 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + +V AWR+ +S + +L Sbjct: 467 ELSGIV-----------------------------------------AAWRKSNSNIVKL 485 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY------RDVG 574 W ++ A + + K + + L + ++ L + LPSGRSL Y +D Sbjct: 486 WRKIEDAAIKAVREKKVV----KMQYGLEFFGSEE-FLFIKLPSGRSLSYVRPRIEKDFR 540 Query: 575 NNRSYLN-----TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 N+ L T+ R TYGGKLTENIVQA++RD LA M+ +AGY IV VH Sbjct: 541 FNKLKLTYEGIEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVH 600 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNP-SWAKGLPLKAEGYESKRYRK 675 DE++ + P+ F + + + P WAKGLPLKA+G+E+ Y+K Sbjct: 601 DEVILDVPNG--FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645 >gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 653 Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 240/713 (33%), Positives = 352/713 (49%), Gaps = 104/713 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET S +D+ G +YAE+ ++LFA+ +DD PV++ D + +P + AL + Sbjct: 3 LSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALTD 62 Query: 64 TDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEALK 117 D+ A N+ FERTVL + + + W CT+V A + GLP +L V + LK Sbjct: 63 NDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTLK 122 Query: 118 LS--SQKMEEGKELIARFCK---------GETHECLYDRNKPNHR-EAWRLFGEYCKGDV 165 L +KM G +LI FCK G T RN PN E W F YC DV Sbjct: 123 LGEEKEKMSVGTQLITYFCKPCKPTKSNGGRT------RNLPNDAPEKWATFKAYCVRDV 176 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 RE+ +RL P+ E+ LW LDQ INDRG +D LA R ++ E Sbjct: 177 EAEREVRRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEAS 236 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +L+ GL + + E+LK W++ + G LT+ T ++ + K T + + +M Sbjct: 237 ALS-GLENPNSG-EQLKHWIYEQEGARPLSLTKETIPELIETAKSETVKTM--LQLKMLL 292 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S+++V K +V+A SDGR G LQF GA+RTGRW+G + QNLPR + + ELD Sbjct: 293 SKTSVKKYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMA--ELDDAR 350 Query: 344 THLPTSITSD-----PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 L T +P ++S +R+ I + G + VAD + IEARV+AW+AGE+W+ Sbjct: 351 ALLRCGDTDALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWR 410 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKM-AST 454 + F G D+Y + ++ F+V P + V R GKV ELALGY GG A ++M A Sbjct: 411 MDVFADGGDIYCASASKMFHV-PVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGADK 469 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 GL DAE E +K++WR+ Sbjct: 470 LGLT------------------DAE-----------------------LEEIKQSWRKAS 488 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL---VYMKKDKNNLILMLPSGRSLVY- 570 R+ LW++ A + + R+R V L + ++ L + LPSGRSL Y Sbjct: 489 PRIVRLWSDFESAALEAV--------RERSTVSLQHGIKLECRSGILFIRLPSGRSLAYV 540 Query: 571 -----RDVGNNRSYLNTTTRQL---TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 + +R L R + ++ TYGG+L EN +QA++RD LA M AGY Sbjct: 541 KPRIEYEESFDREGLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGY 600 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ +HDE+V ETP + + A + +M+ WA GL L A+GY + Y+K Sbjct: 601 PIVMHIHDEVVVETPRSVDCLADVC-EIMSKPVDWAPGLVLTADGYTTNYYKK 652 >gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] Length = 643 Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 233/706 (33%), Positives = 351/706 (49%), Gaps = 95/706 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL K G+ KYAE D ++LFA+ +D V++ D + ++P+ + Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + +V A N+ FER L + W CT++ + GLP +L+ VGE LKL Sbjct: 61 SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM EGK LI F CK + RN +H E W F EY + DV I K+ Sbjct: 121 DKQKMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIKKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK-LDQELESLTYGLVS 231 L P+S E E +++DQ INDRG +D L + + + R + +D+ +E LT GL + Sbjct: 181 LSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIE-LT-GLEN 238 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + L+ LK WL + GL ++ L + + L + + + +++ R S+S+V K Sbjct: 239 PNSPLQ-LKEWLN-KKGLEIDSLAKKDVESALKNTEGDIKEVLEL---RQELSKSSVRKY 293 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + + D R RG +QF GA+RTGR+SG + QNL R + ++LD L S+ Sbjct: 294 DAMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRR--NNLKDLD-----LARSLV 346 Query: 352 SDPD----------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + D P I+S +R+ IA EG + +++D + IEARVLAW+AGEQW L A Sbjct: 347 KNRDYETMEILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDA 406 Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLN 458 FE GED+Y T +R F V + V R GK+ LA GYQG A + M GL+ Sbjct: 407 FENGEDIYCRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMGGIEMGLS 466 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + +V + WR+ + + Sbjct: 467 EDELQSIVDS-----------------------------------------WREANPNIV 485 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 LW ++ ++ ++ R + + + +K L + LPS R L Y +G N Sbjct: 486 SLWWDIDSVVKRVVK------TRTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTN 539 Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R + + + +YGGK ENIVQA++RDILAE MM K G++IV+ +H Sbjct: 540 RFGGESIVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIH 599 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE+V E +D + + +M+ PSWA GL L A+G+ES+ Y+K Sbjct: 600 DEVVIE---SDSSSIEEINQIMSLVPSWAPGLILDADGFESEFYKK 642 >gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2] gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2] Length = 648 Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 248/706 (35%), Positives = 344/706 (48%), Gaps = 90/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL K G+ Y E D ++LFA+ FDD PV++ D +P + Sbjct: 1 MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL ++ V A+N+ FERT + FNL + +W CT V A + GLP L V +ALKL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 S+QK + GK LI F CK RN P H E W F YC DV V R I R Sbjct: 121 SAQKDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIKNR 180 Query: 175 L---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + EPL S E +LW LDQ INDRG +DV L + + L E + LT GL + Sbjct: 181 ISKFEPLES-EHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLT-GLPN 238 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + + LK WL E GL + L + + ++ + T +V R ++++V K Sbjct: 239 PNSTAQ-LKKWL-EEKGLTISSLAKDKIEELIENTNDETVH--RVLRLRQEMAKTSVKKY 294 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + +A+ D R+RG LQF GASRTGRW+G + QNLP+ E+LD L Sbjct: 295 LAMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQ--NKIEDLDTARNLLKGGHY 352 Query: 352 SDPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + L ++S VR+ I SEG + V+D + IEARV+AW+AGE+W+L+ F T Sbjct: 353 EAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHG 412 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + A+ F V +TK R GKV ELALGYQGG A +M + GL Sbjct: 413 KIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALNMGLAEGELP 472 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV KAWR + ++ + W + Sbjct: 473 ELV-----------------------------------------KAWRTANKKIVKFWYD 491 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------DVGNNR 577 + A + ++ K + + + + +Y + L + LPSGR L Y D + Sbjct: 492 VEAAAIKAVKERKPV--KLQHGLTFLY---ESGILFVQLPSGRRLAYAKPKLELDERFGK 546 Query: 578 SYLNTTTR----QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 L + + R TYGGKL ENIVQA +RD LA +M AGY V+ VHDE V Sbjct: 547 EALTYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAV 606 Query: 634 CETP----DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + D+ A +M SWAKGLPL A+G+ + Y+K Sbjct: 607 LDVPRGKNELDKVEA-----IMGEPISWAKGLPLTADGFVTDYYKK 647 >gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens LL3] Length = 648 Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 244/705 (34%), Positives = 343/705 (48%), Gaps = 88/705 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ Y E D ++LFA+ FD+ P+++ D +P + Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL ++ V A+N+ FERT + FN +P +W CT V A + GLP L V +ALKL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 S QK +EGK LI F CK RN P H + W F YC DV V R I R Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIKNR 180 Query: 175 LEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + L EQELW LDQ INDRG +D L + + L E + LT GL + Sbjct: 181 ISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELT-GLPNP 239 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + + LKTWL + GL + L + + ++ + +V R ++++V K Sbjct: 240 NSTAQ-LKTWL-EDKGLSVSSLAKDKIEELIEKTDDASVH--RVLRLRQEMAKTSVKKYL 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + +A+ D R+RG LQF GASRTGRW+G + QNLP+ + +LD T L Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIA--DLDTARTLLKGGHYE 353 Query: 353 DPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + L ++S VR+ I SEG + V+D + IEARV+AW+AGE W+L F T Sbjct: 354 AIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGK 413 Query: 408 LYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + A+ F V +TK R GKV ELALGYQGG A +M + T GL+ + Sbjct: 414 IYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELPG 473 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 LV KAWR + ++ + W ++ Sbjct: 474 LV-----------------------------------------KAWRTANKKIVQFWYDV 492 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------DVGNNRS 578 A + ++ K + + L ++ + L + LPSGR L Y D + Sbjct: 493 EAAAVKAVKERKPVKIQH----GLTFL-CESGILFVQLPSGRRLAYAKPKLEIDDRFGKE 547 Query: 579 YLNTTTR----QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 L + + R TYGGKL ENIVQAV+RD LA ++ AGY V+ VHDE V Sbjct: 548 ALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVL 607 Query: 635 ETP----DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + D+ A +M WAKGLPL A+G+ + Y+K Sbjct: 608 DVPRGKNELDKVEA-----IMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] Length = 648 Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 244/703 (34%), Positives = 345/703 (49%), Gaps = 84/703 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ Y E D ++LFA+ FD+ P+++ D +P + Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL ++ V A+N+ FERT + FN +P +W CT V A + GLP L V +ALKL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 S QK +EGK LI F CK RN P H + W F YC DV V R I R Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIKNR 180 Query: 175 L---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + EPL + EQELW LDQ INDRG +D L + + L E + LT GL + Sbjct: 181 ISKFEPLKA-EQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELT-GLPN 238 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + + LK WL + GL + L + + ++ + +V R ++++V K Sbjct: 239 PNSTAQ-LKKWL-EDKGLSVSSLAKDKIEELIEKTDDASVH--RVLRLRQEMAKTSVKKY 294 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + +A+ D R+RG LQF GASRTGRW+G + QNLP+ + +LD T L Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIA--DLDTARTLLKGGHY 352 Query: 352 SDPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + L ++S VR+ I SEG + V+D + IEARV+AW+AGE W+L F T Sbjct: 353 EAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHG 412 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + A+ F V +TK R GKV ELALGYQGG A +M + T GL+ + Sbjct: 413 KIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELP 472 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV KAWR + ++ + W + Sbjct: 473 GLV-----------------------------------------KAWRTANKKIVQFWYD 491 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------DVGNNR 577 + A + ++ K + + L ++ + L + LPSGR L Y D + Sbjct: 492 VEAAAVKAVKERKPVKIQH----GLTFL-CESGILFVQLPSGRRLAYAKPKLEIDDRFGK 546 Query: 578 SYLNTTTR----QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 L + + R TYGGKL ENIVQAV+RD LA ++ AGY V+ VHDE V Sbjct: 547 EALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETV 606 Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P +E + + +M WAKGLPL A+G+ + Y+K Sbjct: 607 LDVPRGKNELDK--VESIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 652 Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 228/697 (32%), Positives = 341/697 (48%), Gaps = 75/697 (10%) Query: 4 LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S +DL KCG+ +Y E D ++LFA+ +DD P+ + D +P+ + + L Sbjct: 5 LSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTKDL 64 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + DV A+N+ FERT + +N +P +W CT V A + GLP L V + L L +Q Sbjct: 65 TDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLDAQ 124 Query: 122 KMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE- 176 K GK LI F CK RN P+H + W+ F +YCK DV V R I K++E Sbjct: 125 KDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRKKIEK 184 Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 P+ E +LW LDQ IND G +D L + T+LD E + LT GL + Sbjct: 185 YPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELT-GL-DNPNS 242 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 +L WL + GL +++ L K ++ R S+++ K + Sbjct: 243 TTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTKKYEAME 301 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL----PTSIT 351 AM SD R RG LQF GA+RT RW+G + QNLP+ + + + H + Sbjct: 302 RAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEAIELL 361 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 + P ++S +R+ I S+G + +V+D + IEARV+AW+AGE W++K F++ +Y Sbjct: 362 FNSPPF-VLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKIYEA 420 Query: 412 TYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKT 468 + + F+V ++TK R GK+ ELALGY G A + M + GL+ + LV Sbjct: 421 SASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLDADELPDLV-- 478 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 AWR + ++ +LW ++ +A Sbjct: 479 ---------------------------------------TAWRNSNPKIVKLWWDVDKAA 499 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-----RDVGNNRSYL--- 580 + + R + + KD L + LPSGR L Y +D R L Sbjct: 500 MTAVREHMPV----RIQYGITFSYKD-GFLFIKLPSGRKLAYVKPKIKDGKFGRPALTYE 554 Query: 581 --NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + + R TYG KL ENIVQAV+RD LA M+ AGYDI + VHDE++ + P+ Sbjct: 555 GMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDVPN 614 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 TD + + +M+ WA GLPL+A+GYE++ Y+K Sbjct: 615 TDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651 >gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes L99] Length = 644 Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 225/702 (32%), Positives = 337/702 (48%), Gaps = 92/702 (13%) Query: 3 TLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 L ID ET S D+ CG Y +ED ++LFA+ +DD PV++ D D + P + E Sbjct: 5 VLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLTIDEI-PDTVLED 63 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L N V AHN+ FERT L +N +P +W CT+V GLP++L + +AL+L+ Sbjct: 64 LNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLAQ 123 Query: 121 QKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLE 176 +K EGK LI FC K RN P H E W F EYC+ DV V R I K++ Sbjct: 124 EKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAKKIA 183 Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 P EQ W LDQ I D+G +DV L + + L ++ + LT GL + Sbjct: 184 KFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLT-GL-ENPN 241 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++LK WL + G + L + + +L+ ++ L ++ R S++++ K + Sbjct: 242 SVQQLKDWL-ADMGYPVSSLNKDSVSELLA-DEDLDEDVREMLLLRQEMSKTSIKKYEKM 299 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSHEELDQ 341 A DGR+RG LQF GA+RTGRW+G + QNLPR + +E + Sbjct: 300 QHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFEM 359 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +++P ++S +R+ IA +G + D + IEARV+AW+AGEQW+L Sbjct: 360 MYSNVP----------DVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDV 409 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLN 460 F + +Y + ++ F++ +V K+ R GKV ELALGY GG A M + GL N Sbjct: 410 FNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMGALEMGLKEN 469 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +V AWR+ ++ L Sbjct: 470 ELQGIV-----------------------------------------DAWRKASPAITSL 488 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-------RDV 573 W + + + I K ++K + + Y + L + LPSGR+L Y Sbjct: 489 WRGVEKHAKLAISTRK---SQKYKGLTFYY---EAGILFIKLPSGRNLAYFRAKLVPGKY 542 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G Y T + ++YTYGGKL ENIVQA++RD LA + G D V+ VHDE + Sbjct: 543 GPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAI 602 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E ++ E + L ++ SWA GLPL+ +G+ S Y K Sbjct: 603 TEVQES-ESSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643 >gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] Length = 653 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 244/711 (34%), Positives = 346/711 (48%), Gaps = 95/711 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D + P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISEI-PDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 AL + +V +A N+ FER L +L +P + +W CT+V A GLP++L + Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSK--HLGVPYYLDPAQWHCTMVHANELGLPASLGQCAK 117 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L + QK G +LI F CK + RN P H E W+ F EYC DV V Sbjct: 118 YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTY 227 I +L P+ E +L+ LDQ INDRG +D LA ++ + D+ L+ E+++LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLN-EMKALT- 235 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + L +LK WL E G E L + + L+ L +V R+ S S+ Sbjct: 236 GL-ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGN-LPENVAEVLKLRLSLSNSS 292 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340 K + A SD R+ G LQF GA+RTGRW+G + QNLPR S E+D Sbjct: 293 TKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVK 350 Query: 341 -QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + + + PD L+ +R+ ++A EG + +V+D + IEARV+AW A + W L Sbjct: 351 AKDVEGIELMYENVPDTLK---QLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVL 407 Query: 400 KAFETGEDLYVTTYARSFNVA-------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 F T +Y T A+ F++ + KD R GKV LALGYQGG A + M Sbjct: 408 DVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG 467 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + ++ EH ++D+ WR Sbjct: 468 A-------------------------------LENGIEEHELQDIV---------DRWRT 487 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571 + R+ W+E +A ++NG K+ L + KK L + LPSGR L Y Sbjct: 488 ANKRIKNFWHETQKAVIDCLQNG----GIKKGPRGLKFYKK-AGFLFIQLPSGRKLAYAK 542 Query: 572 ------DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 D G Y + T + TYGGKL ENIVQA +RD+LAE M+ KAGY I Sbjct: 543 AHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPI 602 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V VHDE V E P+ ++ + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 603 VFHVHDEAVAEVPEGEK-SIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652 >gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188] gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188] gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] Length = 653 Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 244/711 (34%), Positives = 344/711 (48%), Gaps = 95/711 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D + P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISEI-PDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 AL + +V +A N+ FER L L +P + +W CT+V A GLP++L + Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKY--LGVPYYLDPAQWHCTMVHANELGLPASLGQCAK 117 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L + QK G +LI F CK + RN P H E W+ F EYC DV V Sbjct: 118 YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTY 227 I +L P+ E +L+ LDQ INDRG +D LA ++ + D+ L+ E++ LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLN-EMKELT- 235 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + L +LK WL E G E L + + L+ L +V R+ S S+ Sbjct: 236 GL-ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGN-LPENVAEVLKLRLSLSNSS 292 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340 K + A SD R+ G LQF GA+RTGRW+G + QNLPR S E+D Sbjct: 293 TKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVK 350 Query: 341 -QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + + PD L+ +R+ ++A EG + +V+D + IEARV+AW A + W L Sbjct: 351 AKDVEGIELMYEDVPDTLK---QLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVL 407 Query: 400 KAFETGEDLYVTTYARSFNVA-------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + F T +Y T A+ F++ + KD R GKV LALGYQGG A + M Sbjct: 408 EVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG 467 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + ++ EH ++D+ WR Sbjct: 468 A-------------------------------LENGIEEHELQDIV---------DRWRT 487 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571 + R+ W+E +A ++NG K+ L + KK L + LPSGR L Y Sbjct: 488 ANKRIKNFWHETQKAVIDCLQNG----GIKKGPRGLKFYKK-AGFLFIQLPSGRKLAYAK 542 Query: 572 ------DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 D G Y + T + TYGGKL ENIVQA +RD+LAE M+ KAGY I Sbjct: 543 AHLEQGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPI 602 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V VHDE V E P+ ++ + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 603 VFHVHDEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] Length = 640 Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 240/703 (34%), Positives = 348/703 (49%), Gaps = 92/703 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLP++L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H W++F YC DV V I Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +SR +L WL E G LT+ ++ L KK + +V +++ + S++ K Sbjct: 239 PNSRA--QLLPWL-KEHGYSANGLTKADVEQEL---KKAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R ++LD ++ Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349 Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 D D ++I+ D VR+ ++A +G V+D + IEARV+AW AGEQW+L F Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVF 407 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 T +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M + LN+ Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++E + ++D WR+ + ++ + W Sbjct: 463 ----------------------VKEEELQGVVDD-------------WRRANKKIVQFWK 487 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575 ++ +A + I++ I K R + K L + LPSGR+L Y D G+ Sbjct: 488 DVQRAAIKAIKSRAPIKLGKIR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541 Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 Y R T + TYGGKL ENIVQA +RDILAE ++ AGYD+V VHDE + Sbjct: 542 KIIYEGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAII 601 Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E +E N LM+ P WA+GLPL +EGY +K Y K Sbjct: 602 EGSGLIIEEVN-----DLMSQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 655 Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 227/707 (32%), Positives = 339/707 (47%), Gaps = 93/707 (13%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 + L ID ET S +DL + G+ YAE ++L A+ FDD V + D V D +P + + Sbjct: 8 SVLSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLK 67 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 AL + + A+N+ FERT L A N +P +W C+ V A + GLP L V L L Sbjct: 68 ALIDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLG 127 Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRL 175 QK GK LI F CK RN P H E W + YC+ DV V R + KRL Sbjct: 128 DQKDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRL 187 Query: 176 --EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P+ KEQ LW LDQ +ND G +D L Q+ E+ L +E + +T GL + Sbjct: 188 ASNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQIT-GL-ENP 245 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + +L+ WL G+ L + +L ++ L +V R S+++V K Sbjct: 246 NSVAQLRDWL-TSRGIETSGLAKKQVSDLLQTD--LPGDVRRVLILRQMMSKTSVKKYEA 302 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD-----------QI 342 + ++ DG +RG LQF GA+RTGRW+G + NLP+ +LD ++ Sbjct: 303 MDRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPK--HRIGDLDEARQLVKTGNYEL 360 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 IT L S+ ++S R+ I +G + VV+D + IEARV+AW+AGE+W++K F Sbjct: 361 ITTLYGSLAD------LLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVF 414 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNL 459 E +Y + ++ F V ++TK R GK+ ELALGY G A +M + GL+ Sbjct: 415 EGHGKIYEASASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMGALEMGLSE 474 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + LV KAWR+ + + Sbjct: 475 DELPALV-----------------------------------------KAWRKANPNIVN 493 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 LW +L ++ + ++ K + A+ + L LPSGRSL Y +G + Sbjct: 494 LWYDLEKSAFEAVKWQKVVTAKSG-----IQFYGGSGLLRARLPSGRSLSYVRPQIGIDE 548 Query: 578 SY---------LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 + + ++Q R TYGGK+ EN+VQA++RD LAE M+ AGY I V Sbjct: 549 RFGREEITYEGVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHV 608 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDE+V E P+ + A + +M+ WA GLP+ A+ +E+ Y+K Sbjct: 609 HDEVVIEVPNEQDAKAD-IERIMSEPIDWAPGLPMNADSFETGYYKK 654 >gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] Length = 640 Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 240/703 (34%), Positives = 347/703 (49%), Gaps = 92/703 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLP++L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H W++F YC DV V I Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +SR +L WL E G LT+ ++ L KK + +V +++ + S++ K Sbjct: 239 PNSRA--QLLPWL-KEHGYSANGLTKADVEQEL---KKAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R ++LD ++ Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349 Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 D D ++I+ D VR+ ++A +G V+D + IEARV+AW AGEQW+L F Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVF 407 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 T +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M + LN+ Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++E + ++D WR+ + ++ + W Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575 ++ +A + I++ I K R + K L + LPSGR+L Y D G+ Sbjct: 488 DVQRAAIKAIKSRAPIKLGKIR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541 Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 Y R T + TYGGKL ENIVQA +RDILAE ++ AGYD+V VHDE + Sbjct: 542 KIIYEGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAII 601 Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E +E N LM P WA+GLPL +EGY +K Y K Sbjct: 602 EGSGLIIEEVN-----DLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 643 Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 229/706 (32%), Positives = 347/706 (49%), Gaps = 95/706 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +DL K G+ KYAE D ++LFA+ DD V++ D ++P+ + Sbjct: 1 MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT++ + GLP +L+ VGE LKL Sbjct: 61 SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKR 174 QKM EGK LI F CK + RN P+H W +F EY + DV EI K+ Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIKKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK-LDQELESLTYGLVS 231 L P+ E E +++DQ INDRG +D L + + ++ R + +D+ +E LT GL + Sbjct: 181 LSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIE-LT-GLEN 238 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + L+ LK WL + GL ++ L + + S+ K +V R S+S+V K Sbjct: 239 PNSPLQ-LKEWLN-KKGLEIDSLAKKDVE---SAIKNAEGDIKEVLELRQELSKSSVRKY 293 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + + + R RG +QF GA+RTGR+SG + QNL R + ++LD L S+ Sbjct: 294 DAMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRR--NNLKDLD-----LARSLV 346 Query: 352 SDPD----------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + D P I+S +R+ I EG + +++D + IEARVLAW+A EQW L A Sbjct: 347 KNRDYETMEFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDA 406 Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLN 458 FE GED+Y T +R F V + + R GK+ LA GYQG A + M GL+ Sbjct: 407 FENGEDIYCRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMGGIEMGLS 466 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + +V + WR+ + + Sbjct: 467 EDELQSIVDS-----------------------------------------WREANPNIV 485 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 LW ++ ++ ++ R + + + + +K L + LPS R L Y +G N Sbjct: 486 SLWWDIDSVVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMN 539 Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R + + + +YGGK ENIVQA++RDILAE MM K G++IV+ +H Sbjct: 540 RFGGESVVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIH 599 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE+V E +D + + +M+ P WA GL L A+G+ES+ Y+K Sbjct: 600 DEVVIE---SDSSSIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642 >gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 655 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 244/712 (34%), Positives = 336/712 (47%), Gaps = 95/712 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TLF D ET SP+ L K G+ Y E D ++LF++ D PVE+ D + MP + Sbjct: 1 MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109 AL + DV AHN+ FER L A + + +W CT+V + GLP +L Sbjct: 61 AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNHRE-AWRLFGEYCKGDV 165 A+ LKL QK G++LI +FC T L RN P+ W F +Y + DV Sbjct: 121 DAIAAVLKLDVQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRRDV 180 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V + I RL P+ E + + LDQ IND G +D L + + R + Sbjct: 181 EVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT GL + + ++ LK WL G LE L + L + T +V R Sbjct: 241 KLT-GLDNPNSPIQ-LKQWLATR-GCELESLAKAEVDSALDTA---TGAVKEVLELRGDL 294 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K + SDGR RG +QF GA RTGR++G + QNLPR +LDQ Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPR--NYLPDLDQAR 352 Query: 344 THLPTS--------ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T + T S PD L S +R+ I S G + +VAD + IEARV+AW+AGE Sbjct: 353 TLVRTGNLDALELLYESVPDTL---SQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGE 409 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMA 452 L+AF G+DLY T +R F V P + V + R GK+ LA GY G A + M Sbjct: 410 TSTLEAFREGKDLYCETASRMFGV-PVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG 468 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + LN+ H +K + AWRQ Sbjct: 469 A---LNMGLAEHELKP-------------------------------------IVDAWRQ 488 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + LW ++ +A I + + I R R + + LPSGR L Y Sbjct: 489 ANPHIVGLWADVEEAAIAAISSRQPIRLRNLR------FSVESGIFFIELPSGRRLAYVQ 542 Query: 573 --VGNNR-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 +G NR TT R+ + TYGGKL ENIVQA++RD+L GM KAG+ Sbjct: 543 PRLGENRWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQ 602 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ VHDEIV + P+ F + LM++ P+WA+GLPL A+GYE YRK Sbjct: 603 IVMHVHDEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] Length = 653 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 243/711 (34%), Positives = 343/711 (48%), Gaps = 95/711 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D + P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISEI-PDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 AL + +V +A N+ FER L L IP + +W CT+V A GLP++L + Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKY--LGIPYYLDPAQWHCTMVHANELGLPASLGQCAK 117 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L + QK G +LI F CK + RN P H E W+ F EYC DV V Sbjct: 118 YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTY 227 I +L P+ E +L+ LDQ INDRG +D LA ++ + D+ L+ E+++LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLN-EMKALT- 235 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + L +LK WL E G E L + + L+ L +V R+ S S+ Sbjct: 236 GL-ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGN-LPENVAEVLKLRLSLSNSS 292 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340 K + A SD R+ G LQF GA+RTGRW+G + QNLPR S E+D Sbjct: 293 TKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVK 350 Query: 341 -QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + + PD L+ +R+ ++A EG + +V+D + IEARV+AW A + W L Sbjct: 351 AKDVEGIELMYEDVPDTLK---QLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVL 407 Query: 400 KAFETGEDLYVTTYARSFNVA-------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + F T +Y T A+ F++ + KD R GKV LALGYQGG A + M Sbjct: 408 EVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG 467 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + ++ EH ++D+ WR Sbjct: 468 A-------------------------------LENGIEEHELQDIV---------DRWRT 487 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571 + R+ W+E +A ++NG K+ L + KK L + LPSGR L Y Sbjct: 488 ANKRIKNFWHETQKAVIDCLQNG----GIKKGPRGLKFYKK-AGFLFIQLPSGRKLAYAK 542 Query: 572 ------DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 D G Y + T + TYGGKL ENIVQA +RD+LAE M + GY I Sbjct: 543 AHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPI 602 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V VHDE V E P+ ++ + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 603 VFHVHDEAVAEVPEGEK-SIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK72] Length = 643 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 230/701 (32%), Positives = 336/701 (47%), Gaps = 85/701 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLTKCG+ +Y + + ++LFA+ D++ ++ D V +P+ + Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT VLA S GLP +L+ VG L + Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM+EG LI F CK + +RN P+H E W LF YCK DV V + I R Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTYGL 229 L PL EQ + LDQ INDRG VD L A + + TK EL L Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSGL---- 236 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +LK WL E G+ ++ L + + L K+ + +++ R+ S+++V Sbjct: 237 -ENPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHL---KEADGEVLEMLKLRLLMSKTSVK 291 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HL 346 K + + SDGR+ G LQF GA+RTGRW+G + QNLP+ L + + Sbjct: 292 KYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQF 351 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 T T + ++S+ +R+ + G + +VAD A IEARVLAW++GE W+L+ FE G Sbjct: 352 ETLDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGG 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463 D+Y + + F V + R GK+ ELALGY G A M + GL Sbjct: 412 DIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEELQ 471 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV WR + + W E Sbjct: 472 PLVNQ-----------------------------------------WRSANPHIVAFWWE 490 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577 + + +Q E R+ + + + + L + LPSGR L Y +G N Sbjct: 491 IDKVAKQVYET------REPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKP 544 Query: 578 --SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +Y +++ TR TYG KL ENIVQ ++RD+LA GM+ + G IVL VHDE V Sbjct: 545 GLTYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVV 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E E + + + L+ + P WA+GLPL+A+GY + Y+K Sbjct: 605 E---VREESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK1057] Length = 643 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 230/701 (32%), Positives = 337/701 (48%), Gaps = 85/701 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLTKCG+ +Y + + ++LFA+ D++ ++ D V +P+ + Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT VLA S GLP +L+ VG L + Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM+EG LI F CK + +RN P+H E W LF YCK DV V + I R Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTYGL 229 L PL EQ + LDQ INDRG VD L A + + TK EL L Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSGL---- 236 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +LK WL E G+ ++ L + + L K+ + +++ R+ S+++V Sbjct: 237 -ENPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHL---KEADGEVLEMLKLRLLMSKTSVK 291 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HL 346 K + + SDGR+ G LQF GA+RTGRW+G + QNLP+ L + + + Sbjct: 292 KYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQV 351 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 T T + ++S+ +R+ + G + +VAD A IEARVLAW++GE W+L+ FE G Sbjct: 352 ETLDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGG 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463 D+Y + + F V + R GK+ ELALGY G A M + GL Sbjct: 412 DIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEELQ 471 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV WR + + W E Sbjct: 472 PLVNQ-----------------------------------------WRSANPHIVAFWWE 490 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577 + + +Q E R+ + + + + L + LPSGR L Y +G N Sbjct: 491 IDKVAKQVYET------REPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKP 544 Query: 578 --SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +Y +++ TR TYG KL ENIVQ ++RD+LA GM+ + G IVL VHDE V Sbjct: 545 GLTYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVV 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E E + + + L+ + P WA+GLPL+A+GY + Y+K Sbjct: 605 E---VREESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A] gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A] Length = 653 Score = 324 bits (830), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 242/711 (34%), Positives = 342/711 (48%), Gaps = 95/711 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D + P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISEI-PDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 AL + +V +A N+ FER L L +P + +W CT+V A GLP++L + Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKY--LGVPYYLDPAQWHCTMVHANELGLPASLGQCAK 117 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L + QK G +LI F CK + RN P H E W+ F EYC DV V Sbjct: 118 YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTY 227 I +L P+ E +L+ LDQ INDRG +D LA ++ + D+ L+ E++ LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLN-EMKELT- 235 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + L +LK WL E G E L + + L+ L +V R+ S S+ Sbjct: 236 GL-ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGN-LPENVAEVLKLRLSLSNSS 292 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340 K + A SD R+ G LQF GA+RTGRW+G + QNLPR S E+D Sbjct: 293 TKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVK 350 Query: 341 -QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + + PD L+ +R+ ++A EG + +V+D + IEARV+AW A + W L Sbjct: 351 AKDVEGIELMYEDVPDTLK---QLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVL 407 Query: 400 KAFETGEDLYVTTYARSFNVA-------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + F T +Y T A+ F++ + KD R GKV LALGYQGG A + M Sbjct: 408 EVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG 467 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + ++ EH ++D+ WR Sbjct: 468 A-------------------------------LENGIEEHELQDIV---------DRWRT 487 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571 + R+ W+E +A ++NG K+ L + KK L + LPSGR L Y Sbjct: 488 ANKRIKNFWHETQKAVIDCLQNG----GIKKGPRGLKFYKK-AGFLFIQLPSGRKLAYAK 542 Query: 572 ------DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 D G Y + T + TYGGKL ENIVQA +RD+LAE M + GY I Sbjct: 543 AHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPI 602 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V VHDE V E P+ ++ + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 603 VFHVHDEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] Length = 646 Score = 323 bits (828), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 230/698 (32%), Positives = 341/698 (48%), Gaps = 83/698 (11%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S +DL KCG+ YA+ V+LFA+ FD ++ D +P + A+ Sbjct: 5 LEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAAI 64 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + DV A N+ FERT L F + W C+ V A LP +L+ VG L L Q Sbjct: 65 FDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQQ 124 Query: 122 KMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE- 176 KM+EGK+LI F CK RN P H E W LF YC DV V +EI ++L+ Sbjct: 125 KMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRKLQH 184 Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E EL+ LDQ INDRG VD L A + + + TK EL L + Sbjct: 185 FPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTGL-----EN 239 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + ++K+WL E G+ +E L++ T ++ + + +++ R+ ++++V K Sbjct: 240 PNSVAQIKSWLG-ENGVEMESLSKKTVAGLIEESDGEVQELLRL---RLLMAKTSVKKYE 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL----PT 348 + ++ SDGR+ G LQF GA+RTGRW+G + QNLP+ E+ + + Sbjct: 296 AMERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDV 355 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + D P ++S+ +R+ I G + VVAD + IEARVLAW++GE+W+L+ F + + Sbjct: 356 ELLYDSTP-NVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKI 414 Query: 409 YVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 Y + + F+V +VTK R GK+ ELALGY G A M + L++ LV Sbjct: 415 YEASASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMGA---LDMG----LV 467 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + AP + AWR + +++ W ++ Sbjct: 468 EEELAP---------------------------------LVSAWRSANPHITQFWWDVDA 494 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTT 584 A KA+ +K+ + + L + LPSGR L Y + N+ N T Sbjct: 495 A------AVKAVTEKKKTRAGRIVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLT 548 Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 ++ R TYG KL ENIVQ +RD+LAE M+ + GY IV+ HDEI+ E P Sbjct: 549 YEGIAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVP 608 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + M +M P WA GLPL+A+GYE Y+K Sbjct: 609 EGTGSVEEMC-AVMAVQPEWADGLPLRADGYECAFYKK 645 >gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 650 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 239/715 (33%), Positives = 333/715 (46%), Gaps = 106/715 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET +D+ K G KY E ++LFA+ F+D PVE+ D +PQ +K Sbjct: 1 MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL N + A N+ FE LK I W CT+V + GLP +L VG+ L+ Sbjct: 61 TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120 Query: 119 --SSQKMEEGKELIARFCK---------GETHECLYDRNKPNHR-EAWRLFGEYCKGDVT 166 QKM+EGK LI FCK G T RN P H E W +F +Y K DV Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRT------RNLPEHAPEKWEIFKKYNKQDVE 174 Query: 167 VTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V R I +L P + EQ LW LDQ INDRG D+ L + + +L +E Sbjct: 175 VERAIRNKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATE 234 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 LT GL S+ +LK W+ G ++ LT+ + ++ +K + ++ R + Sbjct: 235 LT-GL-SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKESK--DEKVKKILELRQLMA 290 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQII 343 ++++ K T+ A DGR+RG LQF GA+RTGRW+G + QNLP ++H +LD Sbjct: 291 KTSIKKYETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLP---QNHLPDLDDAR 347 Query: 344 THLPTS--------ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + T S PD L S +R+ I EG + +VAD + IEARV+AW AGE Sbjct: 348 NFIRTGQFDKVEFLYDSIPDTL---SQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGE 404 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 QW+L F D+Y + ++ F V + + R GK+ ELALGY G A M Sbjct: 405 QWRLDVFNNNGDIYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDK 464 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++N PE + L K WR Sbjct: 465 --------------------------------KKNIPEDELPGLV---------KDWRDA 483 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK---DKNNLILMLPSGRSLVY 570 +++ W ++ +A ++ I R+R V L + K D L + LPSGR L Y Sbjct: 484 SPHITKFWWDVDKAAKKAI--------RERTTVVLQFGLKFIYDPGVLFIQLPSGRKLAY 535 Query: 571 -RDVGNNRSY---------LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R Y L T++Q T TYG K+ ENIVQA +RD L M Sbjct: 536 IRPKIEPGPYDKPIITYEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDK 595 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 G+ IV+ VHDE++C+ P + + + WA GLPLKA+GYE Y K Sbjct: 596 GFHIVMHVHDELICDVP-KGKGTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649 >gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK115] Length = 645 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 229/710 (32%), Positives = 334/710 (47%), Gaps = 101/710 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLTKCG+ +Y + ++LFA+ D+ ++ D +P+ + Sbjct: 1 MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FER L + W CT V A S GLP +L+ VG L + Sbjct: 61 SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM+EG+ LI F C+ + +RN P+H E W LF YCK DV V + I KR Sbjct: 121 EEQKMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIRKR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAH--TLNQIVDVER-TKLDQELESLTYGL 229 L PL EQ L+ LDQ INDRG VD L L + E+ T+ EL L Sbjct: 181 LSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSGL---- 236 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +LK WL G+ ++ L + + L K++ + +++ R+ S+++V Sbjct: 237 -DNPNSVSQLKGWLE-NQGVFMDSLGKKDVAKQL---KEVDGEILEMLKLRLLMSKTSVK 291 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---- 345 K + + SD R+ G LQF GA+RTGRW+G + QNLP+ +L + + Sbjct: 292 KYQAMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQL 351 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + D P ++S+ +R+ + G + +VAD A IEARVLAW++GE W+L+ FE G Sbjct: 352 KALDLLYDNVP-NVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQG 410 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 D+Y + A F V + V R GK+ ELALGY G A + M + GL+ Sbjct: 411 GDIYCASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALDMGLDEEEL 470 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV WR + + W Sbjct: 471 QPLVNQ-----------------------------------------WRMANPHIVAFWW 489 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR---------------- 566 + +A ++ E R+ + V + + + LPSGR Sbjct: 490 VIDKASKEVYET------REPQKVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGK 543 Query: 567 -SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 L Y +G N+ + +R TYG KL ENIVQ ++RD+LA GMM K DIV Sbjct: 544 PGLTYEGIGENKKW--------SRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIV 595 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L VHDE V E + E + + L + P WA+GLPL+A+GY + Y+K Sbjct: 596 LHVHDEAVVEVKEG-EASVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644 >gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9] gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9] Length = 640 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 238/703 (33%), Positives = 347/703 (49%), Gaps = 92/703 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL+++T Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITGLAN 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +SR +L WL E G LT+ ++ L K + +V +++ + S++ K Sbjct: 239 PNSRA--QLLPWL-KEHGYSANGLTKADVEQEL---KTAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R ++LD ++ Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349 Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 D D ++I+ D VR+ ++A +G V+D + IEARV+AW AGEQW+L F Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVF 407 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 T +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M + LN+ Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++E + ++D WR+ + ++ + W Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575 ++ +A + I++ I K R + K L + LPSGR+L Y D G+ Sbjct: 488 DVQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541 Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 Y + T + TYGGKL ENIVQA +RDILAE ++ AGY +V VHDE + Sbjct: 542 KIIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAII 601 Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E +E N LM P WA+GLPL +EGY +K Y K Sbjct: 602 EGSGLTIEEVN-----DLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] Length = 662 Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 231/718 (32%), Positives = 336/718 (46%), Gaps = 108/718 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL CG+ +Y E D V+LFA+ +DD PV++ D +P + Sbjct: 9 MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L + +V A N+ FERT +K F + +W CT V A + GLP L+ V E LKL Sbjct: 69 HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR--EAWRLFGEYCKGDVTVTREIFK 173 +QK GK LI F CK RN P H E W + Y DV V RE+ + Sbjct: 129 EAQKDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREVRR 188 Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +LE P+ E +LW LDQ INDRG +D L + D +T L QE + +T + Sbjct: 189 KLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDITQ--LE 246 Query: 232 SSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + L KLK WL E GL D E ++ + + T + +Q+ R +++V Sbjct: 247 NPNSLTKLKEWL-AEQGLETPDGLGKEHMPTLLVQAPDEDTRRVLQI---RQELGKTSVD 302 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSH 336 K N + ++ +DGR RG LQF GA+RTGRW+G + QNLP+ S Sbjct: 303 KYNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREVLKSGDF 362 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + L+ + LP+ ++S +R+ I S G + +V+D + IEAR++AW+A E Sbjct: 363 DLLEMLYGALPS----------VLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEH 412 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKM 451 W L F+ +Y ++ F V + K RA GKV LA GYQGG A KM Sbjct: 413 WVLNVFQDHGKIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKM 472 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + ++ PE + + K WR Sbjct: 473 GA-------------------------------LKSGIPEEELPGIV---------KRWR 492 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK---NNLILMLPSGRSL 568 + + R+ +LW +A + R++R VPL + K + L LPSGRSL Sbjct: 493 KANPRIVKLWYAAEEAALTAV--------REKRTVPLAHGVKYRYKSGTLFADLPSGRSL 544 Query: 569 VYRDV-----------GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 Y + G ++ ++ TYGG+L EN+VQA++RD LAE +M Sbjct: 545 AYVNPRIKPDPNFGKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRL 604 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 A Y V+ VHDE+V + P + + +M+ WA GLPL A G+E + Y+K Sbjct: 605 DAAEYRTVMHVHDEVVLDVP-IGTGSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661 >gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] Length = 640 Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 234/699 (33%), Positives = 339/699 (48%), Gaps = 84/699 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET SP+ L K G+ KY D ++LF++ D V D +P + Sbjct: 1 MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL ++ VT A+N+ FERT L A + W C++V A + GLP +LK VG+ L L Sbjct: 61 DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKRLE- 176 +QKM+EGK+LI FC + + R P+ A W+LF Y DV V I ++L Sbjct: 121 DAQKMDEGKDLIKHFCVPDDNS---QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLAD 177 Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 P+ E + +DQ INDRG +D LA I + R + LT GL + + Sbjct: 178 FPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLT-GLDNPASP 236 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L+ L+ WL + G +E + + + L++ +A+++ R SRS+V K ++ Sbjct: 237 LQ-LQEWLN-QHGCPIESMAKESVDDALANATGQVREALEL---RQELSRSSVAKYRKMI 291 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSHEE---LDQIITHLPTS 349 + +D R G LQF GA+RTGRW+G + QNLPR P + D L Sbjct: 292 DVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEML 351 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +S PD L S +R+ I S + +VAD + IEARVLAW+AGE+ L AF+ GEDLY Sbjct: 352 YSSVPDTL---SQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLY 408 Query: 410 VTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHL 465 T + F V P + V + R GK+ LA GY G A + M + GL+ + + Sbjct: 409 CATASAMFGV-PVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLSEDELQPI 467 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 V AWRQ + + +LW+++ Sbjct: 468 V-----------------------------------------DAWRQANPNIVQLWHKVD 486 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTT 583 A + I G+ + R + +K L + LPSGR L Y +G NR + Sbjct: 487 NAATRAISTGRPLTLRN------LGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSI 540 Query: 584 T-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 T R+ + TYGGKL ENIVQA +RD+LAE + AG+ IV+ +HDE+V + Sbjct: 541 TYWGQGVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDE 600 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + + LM P WA+GLP+ A GYE Y+K Sbjct: 601 PINSGTTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639 >gi|139473888|ref|YP_001128604.1| phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2] gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2] Length = 640 Score = 319 bits (818), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 238/703 (33%), Positives = 347/703 (49%), Gaps = 92/703 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +SR +L WL E G + LT+ ++ L K + +V +++ + S++ K Sbjct: 239 PNSRA--QLLPWL-KEHGYSVNGLTKADVEQEL---KTAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R ++LD ++ Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349 Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 D D ++I+ D VR+ ++A + V+D + IEARV+AW AGEQW+L F Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVF 407 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 T +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M + LN+ Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++E + ++D WR+ + ++ + W Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575 ++ +A + I++ I K R + K L + LPSGR+L Y D G+ Sbjct: 488 DVQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541 Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 Y + T + TYGGKL ENIVQA +RDILAE ++ AGY +V VHDE + Sbjct: 542 KIVYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAII 601 Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E +E N LM P WA+GLPL +EGY +K Y K Sbjct: 602 EGSGLTIEEVN-----DLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 645 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 228/705 (32%), Positives = 348/705 (49%), Gaps = 91/705 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL K G+ Y + + ++LFA+ FD V++ D +P + Sbjct: 1 MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL N ++ A N+ FER L N + + W CT V A + G P +L V + L L Sbjct: 61 EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 + QKM+EGKELI F CK RN P H E W F +YC DV V R I K+ Sbjct: 121 TEQKMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIRKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+S EQ + LD INDRG VD+ L + + + E + LT GL + Sbjct: 181 LSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQRLT-GL-DN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL +E G+ ++ L++ + K+ + ++ N R++ +++++ K Sbjct: 239 PNSVAQLKQWL-IENGVEVDSLSKKAVSDL---AKEADGEVERLLNLRLQLAKTSIKKYE 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + A+ D R+RG LQF GA+RTGRW+G + QNLP ++H + + +L S Sbjct: 295 AIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLP---QNHLKDLTLARNLVKSGDF 351 Query: 353 DPDPL------QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D L ++S+ +R+ I + +VAD + IEARV+AW+AGE+W++ F T Sbjct: 352 DTLALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHG 411 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + ++ F V ++TK R GK+ ELALGY G A M + L++ Sbjct: 412 KIYEASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMGA---LDMGV--- 465 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 ED G AWRQ + +++LW ++ Sbjct: 466 -----------------------------AEDELQGLVT-----AWRQANPNITKLWWDI 491 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-----------RDV 573 +A + ++ ++ K + ++ + + + LPSGR L Y RD Sbjct: 492 DKAAIKAVKKKTTVMVGK------IKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDA 545 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 T++ R TYG KL ENIVQA++RD+LAE M+ + GY+IV+ +HDEIV Sbjct: 546 VTYEGI--GATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIV 603 Query: 634 CETPDTDEFNASMLY---HLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P N L +M P+WA+ LPL+A+G+E + YRK Sbjct: 604 IEAP----LNFGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644 >gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] Length = 644 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 221/701 (31%), Positives = 334/701 (47%), Gaps = 84/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L CG+ +YA E ++LFA+ +D P ++ D MP+ + Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L + V A N+ FER + F L + W CT V A LP +L+ VGEAL L Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +KM EGK+LI F CK RN P+ E W LF YC DV V ++I + Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLDQELESLTYGL 229 L P+ +EQEL+ +DQ INDRG VD ++ A + + +K E+ L Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISGL---- 236 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +LK WL E G+ ++ L + + ++ +K + ++ R+ S+++V Sbjct: 237 -ENPNSVSQLKDWLN-EKGIEVDSLAKAAVEELV---EKTEGEVSEMMKLRLSMSKTSVK 291 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT----H 345 K + ++ DGR+ G LQF GA+RTGRW+G + NLP+ EL + I + Sbjct: 292 KYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRY 351 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + D P +++S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F Sbjct: 352 DLVELLYDSTP-EVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGA 410 Query: 406 EDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +Y T ++ F++ ++TK RA GKV LA Y G A M + + Sbjct: 411 GKIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEEELK 470 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV++ WR + + W E Sbjct: 471 GLVQS-----------------------------------------WRTANPHIVNYWYE 489 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--------RDVGN 575 + A + ++ RK V V + L + LPSGR L Y R Sbjct: 490 IDGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSE 543 Query: 576 NRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + SY T R+ TR +YG K ENIVQA +RD+LAE M+ K G+DIV +HDE+V Sbjct: 544 SVSYEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVL 603 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P+ + + +M P W +GLPLKA G+ES Y+K Sbjct: 604 EVPEGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 646 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 235/703 (33%), Positives = 331/703 (47%), Gaps = 91/703 (12%) Query: 3 TLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 TL ID ET S +DL CG+ KY+ ++L A+ DD D + P+ E Sbjct: 4 TLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIEM 63 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + VT A N+ FERT ++ W CT V A LP +L+ VG L L Sbjct: 64 LFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLDK 123 Query: 121 QKMEEGKELIARFC---KGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE 176 QKM EGKELI FC K RN P + E WR F YC DV V ++I +RL Sbjct: 124 QKMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQRLA 183 Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTYGLVS 231 P+ +EQE++ LDQ INDRG VD L A + + T EL L Sbjct: 184 KFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTGL-----E 238 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + + +LK WL E GL ++ L + T + + + K +V R+ S+++V K Sbjct: 239 NPNSVSQLKLWL-KEKGLEVDSLAKDTVKDL---SMKAEGDVQEVLKLRLATSKTSVKKY 294 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT----HLP 347 + ++ ++ R+ G LQF GA+RTGRW+G + NLP+ EL + + + Sbjct: 295 EAIDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEE 354 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + P ++S+ +R+ +A G + +++D + IEARVLAW+AGE+W+L+ FET Sbjct: 355 VELFYESTP-NVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGK 413 Query: 408 LYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + + F+VA ++TK R GK+ ELALGY G A M + GL Sbjct: 414 IYEASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMGALKMGLTEEELPG 473 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 LV T WR + ++ W + Sbjct: 474 LVST-----------------------------------------WRSANPHITAFWWAV 492 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A + + +K V V + L + LPSGR L Y R LN Sbjct: 493 DEAAVTAVRD------KKPSKVGRVSFEYKSGILFVTLPSGRKLSYV---KPRMMLNKFG 543 Query: 585 RQ-LTRE-----------YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 R+ LT E TYG KL ENIVQA SRDILAE M+ K G+DIV VHDE+ Sbjct: 544 REGLTYEGIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEV 603 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E PD + + +M NP W +GLPLKA G+ES Y+K Sbjct: 604 VLEVPDGKS-SVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645 >gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] Length = 644 Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 222/707 (31%), Positives = 336/707 (47%), Gaps = 96/707 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L CG+ +YA E ++LFA+ +D P ++ D +P + Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L + V A+N+ FER + F L + W CTLV A LP +L+ VGEAL L Sbjct: 61 EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +KM EGK+LI F CK RN P+ E W LF YC DV V ++I + Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIRNK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLDQELESLTYGL 229 L P+ +EQ+L+ +DQ INDRG VD + A + + TK E+ L Sbjct: 181 LAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISGL---- 236 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +LK WL E G+ ++ L + + ++ + + + +++ R+ S+++V Sbjct: 237 -ENPNSVSQLKDWLN-EKGIEVDSLAKAAVEELVENTQGDVAEMMKL---RLAMSKTSVK 291 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---- 345 K + ++ DGR+ G LQF GA+RTGRW+G + NLP+ EL + + Sbjct: 292 KYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRY 351 Query: 346 --LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + S PD ++S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F Sbjct: 352 DLVELLYDSTPD---VLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFR 408 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 +Y T ++ F++ ++TK RA GKV LA Y G A M + + Sbjct: 409 GAGKIYEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGALNFVEEEE 468 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV++ WR + + W Sbjct: 469 LKGLVQS-----------------------------------------WRTANPHIVNYW 487 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--------RDV 573 E+ A + ++ RK V +V + L + LPSGR L Y R Sbjct: 488 YEIDGAVKAAVKE------RKMTKVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFG 541 Query: 574 GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + SY T R+ TR +YG K ENIVQA +RD+LAE M+ K G+DIV +HDE+ Sbjct: 542 SESVSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEV 601 Query: 633 VCETPD----TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E P+ +E N +M P W +GLPLKA G+ES Y+K Sbjct: 602 VLEVPEGTSSVEEVNG-----IMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047] gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047] Length = 640 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 238/703 (33%), Positives = 346/703 (49%), Gaps = 92/703 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 KL +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLVQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +SR +L WL E G + LT+ ++ L K + +V +++ + S++ K Sbjct: 239 PNSRA--QLLPWL-KEHGYSVNGLTKADVEQEL---KTAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R ++LD ++ Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349 Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 D D ++I+ D VR+ ++A + V+D + IEARV+AW AGEQW+L F Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVF 407 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 T +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M + LN+ Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++E + ++D WR+ + ++ + W Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575 ++ +A + I++ I K R + K L + LPSGR+L Y D G+ Sbjct: 488 DVQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541 Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 Y + T + TYGGKL ENIVQA +RDILAE ++ AGY +V VHDE + Sbjct: 542 KIVYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAII 601 Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E +E N LM P WA+GLPL +EGY +K Y K Sbjct: 602 EGSGLTIEEVN-----DLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] Length = 661 Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 229/712 (32%), Positives = 344/712 (48%), Gaps = 92/712 (12%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 T+ +D ET S ID+ + G+ YA D ++L + +D V++ D P+ Sbjct: 2 TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 E L + DV A+N+ FERT L + +P +W CT V A + GLP L VGEAL Sbjct: 62 FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121 Query: 117 KLSSQKMEE--GKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L K ++ GK LI FCK + RN P H + W+LF EY + DV Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++L+ P++ +EQELW LDQ IND G +D+ LA + Q + + +L QE LT G Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLT-G 240 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP-----QAIQVFNNRMRA 283 L ++ L +LK W F+ GL + +T+ + + + K+L +++ R Sbjct: 241 L-NNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIRKEL 299 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 +++V K + A+ DG LRG LQF GA+RTGRW+G + NLP+ +L + + Sbjct: 300 GKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLARDL 359 Query: 344 THLPTSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 D D L+++ S +R+ I SEG + VV+D + IEARV+AW+A E Sbjct: 360 VK-----QEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADE 414 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS 453 +W+L F T +Y + A+ F+V + K R GKV ELALGY GG A + M Sbjct: 415 KWRLNVFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMD- 473 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 K + P++ + WR+ Sbjct: 474 -------------KAGTIPDD---------------------------EIPMIIANWRKA 493 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +LW A IE + I + + + Y+ + L + LPSGR L Y D Sbjct: 494 SPNICKLWRNAEAAARAAIEERRTI--KLKHGLSFSYINR---ILFIGLPSGRKLAYYDT 548 Query: 574 -------GNN---RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 G + + ++ T++ R T+GGKL ENIVQA +RD LA M + AGY Sbjct: 549 RIEDDEKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQ 608 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ VHDEI+ + P+TD + +M WA+ LPL+ +GYE+ Y+K Sbjct: 609 IVMHVHDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660 >gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] Length = 644 Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 225/707 (31%), Positives = 333/707 (47%), Gaps = 96/707 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L CG+ +YA E ++LFA+ +D P + D MP + Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L + V A N+ FER + F L + W CT V A LP +L+ VGEAL L Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +KM EGK+LI F CK RN P+ E W LF YC DV V ++I + Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLDQELESLTYGL 229 L P+ +EQEL+ +DQ INDRG VD ++ A T + + +K E+ L Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISGL---- 236 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +LK WL E G+ ++ L + + ++ +K + ++ R+ S+++V Sbjct: 237 -ENPNSVSQLKEWLN-EKGIEVDSLAKAAVEELV---EKTEGEISEMMKLRLSMSKTSVK 291 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---- 345 K + ++ DGR+ G LQF GA+RTGRW+G + NLP+ EL + I Sbjct: 292 KYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRY 351 Query: 346 --LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + S PD ++S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F Sbjct: 352 DLVELLYDSTPD---VLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFR 408 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 +Y T ++ F++ ++TK RA GKV LA Y G A M + + Sbjct: 409 GAGKIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEEE 468 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV++ WR + + W Sbjct: 469 LKGLVQS-----------------------------------------WRTANPHIVNYW 487 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--------RDV 573 E+ A + ++ RK V V + L + LPSGR L Y R Sbjct: 488 YEIDGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFG 541 Query: 574 GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + SY T R+ TR +YG K ENIVQA +RD+LAE M+ K G+DIV +HDE+ Sbjct: 542 SESVSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEV 601 Query: 633 VCETPD----TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V E P+ +E N +M P W +GLPLKA G+ES Y+K Sbjct: 602 VLEVPEGTSSVEEVNG-----IMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35] gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35] Length = 650 Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 237/701 (33%), Positives = 336/701 (47%), Gaps = 85/701 (12%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + DV A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIANK 182 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T GL + Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 417 KIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV + WR + + W Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577 +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P D + +M WAKGL L ++G+ S Y K Sbjct: 610 EIP-KDSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 651 Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 219/707 (30%), Positives = 339/707 (47%), Gaps = 96/707 (13%) Query: 8 FETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 ET S +DL CG+ KY +ED ++LFA+ DD PV++ D +P + + ++ Sbjct: 1 METYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPA 60 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS--SQKM 123 + AHN+ FER L + +W C+++ A GLP++LK VG L LS QKM Sbjct: 61 IIKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKM 120 Query: 124 EEGKELIARFCK--------GETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 GK LI+ FCK G+ RN P + E W+LF +YC DV REI + Sbjct: 121 RIGKTLISYFCKPCKPTRVNGQR-----SRNTPADAPEKWQLFKDYCHRDVETEREISNK 175 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L+ P+ + E ELW DQ +ND G +D+ + HT+ +L E E +T G+ Sbjct: 176 LDKFPIPASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNGI--G 233 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + + +LK W+ + +E L + +L + ++P+ +V R + ++++ K Sbjct: 234 PKKIAQLKEWICRKEDRSIESLDKDAVIELL-KDSSISPETRRVLQIRQESGKTSITKYA 292 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + ++ +D RL G LQF GA+RTGRW+G +F PQNLPR + + EL + + + Sbjct: 293 AIQRSVCNDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESL 352 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D Q+ S +R+ VI G +AD + IEAR+ AW E+W+ + F T +Y Sbjct: 353 DMLYGSYNQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIY 412 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNTFAHLV 466 + A+ F+V VTK D R GKV ELALGY GG A ++M + GL+ + +V Sbjct: 413 EASAAQMFHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMGGADMGLSEDEMQDIV 472 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 WR + ++W + Sbjct: 473 NK-----------------------------------------WRLASPNIKKMWYRVQD 491 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKK---DKNNLILMLPSGRSLVY-------RDVGNN 576 A + R+R+ V +V+ + L LPSGR L Y G+ Sbjct: 492 AAYTAV--------RERKRVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDE 543 Query: 577 RSYL-------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 +Y T++ R+ T+GGKL EN++QA++RD LA+ M+ GY I++ +H Sbjct: 544 LTYEGYGSDQDGKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIH 603 Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE+V E P +T E + +M WA GL L A+G+ S+ YRK Sbjct: 604 DEVVVEVPSETAESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650 >gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes MGAS315] gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage 315.6] gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1] gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus pyogenes MGAS315] gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1] gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 640 Score = 316 bits (809), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 236/703 (33%), Positives = 346/703 (49%), Gaps = 92/703 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGLDN 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +SR +L WL E G LT+ ++ L K + +V +++ + S++ K Sbjct: 239 PNSRT--QLLPWL-KEHGYSASGLTKADVEKEL---KTAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SDGR+ G LQF GASRTGRW+G V QNL R ++LD ++ Sbjct: 293 YEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDAREYVKKR- 349 Query: 351 TSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 D D ++I+ D VR+ ++A +G V+D + IEARV+AW AGEQW+L F Sbjct: 350 --DIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVF 407 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 T +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M + LN+ Sbjct: 408 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG-- 462 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++E + ++D WR+ + ++ + W Sbjct: 463 ----------------------VKEEELQGLVDD-------------WRRANKKIVQFWK 487 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGN 575 ++ +A + I++ + K R + K L + LPSGR+L Y D G+ Sbjct: 488 DVQRAAIKAIKSRAPVRLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 541 Query: 576 NRSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 Y + T + TYGGKL ENIVQA +RDILAE ++ AG+ +V VHDE + Sbjct: 542 KIVYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAII 601 Query: 635 ETPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E +E N LM P WA+GLPL +EGY +K Y K Sbjct: 602 EGSGLTIEEVN-----DLMAQAPEWAEGLPLNSEGYITKYYMK 639 >gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 655 Score = 316 bits (809), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 242/713 (33%), Positives = 338/713 (47%), Gaps = 97/713 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TLF D E+ SP L K G+ YAE D ++LF + D PV++ D MP + Sbjct: 1 MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109 AL ++ V AHN+ FER L A + +W CT++ + GLP +L Sbjct: 61 AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNHRE-AWRLFGEYCKGDV 165 AV LKL QK GK+LI +FC T L RN P+ W F +Y + DV Sbjct: 121 DAVAAVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I RL P+ E + + LDQ IND G +D L + + R + Sbjct: 181 EVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT GL + + ++ LK WL + G LE L + L + + + +++ R Sbjct: 241 KLT-GLDNLNSPIQ-LKQWL-VTRGCELESLAKAEVDAALDTATGVVKEVLEL---RGDL 294 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K + +DGR RG +QF GA RTGR++G + QNLPR +LDQ Sbjct: 295 AKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPR--NYLPDLDQAR 352 Query: 344 THLPTS--------ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + + T S PD L S +R+ I S G + +VAD + IEARV+AW+AGE Sbjct: 353 SLVQTGNLDALELLYESVPDTL---SQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGE 409 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKM- 451 L AF G+DLY T +R F+V P + + + R GK+ LA GY G A + M Sbjct: 410 TTTLAAFREGKDLYCETASRMFDV-PVEKHGINGELRQKGKIAVLACGYGGSVGALKAMG 468 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A T GL EH ++ + AWR Sbjct: 469 AFTMGL--------------------------------AEHELKPIV---------DAWR 487 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 Q + + +LW ++ QA I + + I R R + L + LPSGR L Y Sbjct: 488 QANPHIVQLWADVEQAAIAAISSRQPIRLRNLR------FSVESGILFIELPSGRRLAYV 541 Query: 572 D--VGNNR-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +G NR TT R+ + TYGGKL ENIVQA++RD+L GM KAG+ Sbjct: 542 QPRLGENRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGH 601 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ VHDEIV + P +F + LM++ P+WA+GLPL A+GYE YRK Sbjct: 602 RIVMHVHDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654 >gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] Length = 653 Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 237/706 (33%), Positives = 337/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725] gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725] Length = 657 Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 238/719 (33%), Positives = 347/719 (48%), Gaps = 107/719 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +D+ K G+ KYA +D ++LFA+ D V++ D ++P+V+ Sbjct: 1 MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + ++ A+N+ FE L I +W T+ G + L A G A+ L Sbjct: 61 EALNDKNIIKHAYNAPFEWWCLNQA-GYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119 Query: 119 SSQKMEE--GKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 K ++ GK LI FC K RN P+H E W LF YC DV EI+ Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTY 227 KRL P+ +EQELW LDQ IN G +D L A ++N IV E T+ E++ Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTE-----EAIQV 234 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL +TG +E+L + T ++ S + +A++V R ++++ Sbjct: 235 TGLDNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLED--KEAVRVLEIRQELAKTS 292 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD---QIIT 344 + K + EA+ DGR+RG LQF GA+RTGRW+G + QNLPR E LD +I+ Sbjct: 293 IKKYVAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPR--NYLETLDYAREIVK 350 Query: 345 HLPTSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + D D L+++ S +R+ + SEG K VVAD + IEARV+AW+AGEQ Sbjct: 351 ------SQDADFLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQ 404 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKM 451 W+ + F T +Y + ++ F V + K R GKV ELALGY G + A M Sbjct: 405 WRQEVFATHGKIYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAM 464 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + + E + D V + WR Sbjct: 465 GA-------------------------------LDMGLEEKELPD---------VVRRWR 484 Query: 512 QKHSRVSELWNELHQAFEQTIENG-----KAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + R+++LW + A + +E G K II R++ L+Y D++ L + LPSGR Sbjct: 485 NANKRITDLWYGIENAVIKLMETGETQGLKGIIF--SREIDLIY---DQDFLTIKLPSGR 539 Query: 567 SLVY-------RDVGNNRSY---LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 L Y G+N + +N TT++ + TYGGKL ENIVQA+SRD LA + Sbjct: 540 KLYYPKPHLKENRFGSNALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKR 599 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 G V+ +HDE V + + N + LM WA GL LKA G+ES Y K Sbjct: 600 LETEGLQTVMHIHDEAVIDADPNVDLNK--VCELMGQPIEWAPGLLLKAAGFESGYYMK 656 >gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] Length = 653 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 237/706 (33%), Positives = 337/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KESTGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] Length = 601 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 219/660 (33%), Positives = 328/660 (49%), Gaps = 78/660 (11%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIPIH 91 +A G D+ P+ LW D +P+ + ++ TI A NS+FE + + PI Sbjct: 3 YAIG-DEDPI-LWLPGDD--LPEFVTNP---SEFTIYAWNSFFEWCIWHHVQEWSNAPIF 55 Query: 92 RWICTLVLARSNGLPSALKAVGEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKPN 149 W T LA +P AL A +AL L QK + GK LI R K + + D + Sbjct: 56 LWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSKPNRGKRIQDADLLE 115 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 F EYC+ DV V R + RL PLS++E+++W LDQTIN RG +D Sbjct: 116 E------FYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVENALL 169 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 I+D KL+QE+ LT +++ +++ ++ E G L + + VL ++ L Sbjct: 170 IIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLE-DETL 228 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P A ++ R + +++ K L + + D R G L + GA+ TGRWSG F PQNL Sbjct: 229 PPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQNL 287 Query: 330 PRPS-RSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 PRPS + + ++ H + + DP++ +S +R + A EGK+L+V D + IEA Sbjct: 288 PRPSFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDYSQIEA 347 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVL W+AG++ L G ++Y T ++ + V P +V ++QR IGKV LALGYQGGAK Sbjct: 348 RVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQGGAK 407 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 AFQ MA G+ ++T DL + + Sbjct: 408 AFQGMAEVYGVEIDT----------------------------------DL-----ADEI 428 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 K WR + ++ + W + +A + + GK ++ + + N L LPSG Sbjct: 429 KVDWRVANRKIVKFWWGVEKAALNAVTHPGKTF------EIRAIKFRFTDNYLFCRLPSG 482 Query: 566 RSLVYRDVGNNRSYL----------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 R L Y + N+ TR+ R+ TYGGKL ENI QAV+RD++AE M+ Sbjct: 483 RLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMAEAML 542 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY++VL+VHDE++ E D D + LM P WAKGLP+ +EG+E RYRK Sbjct: 543 RVENAGYEVVLSVHDELIAEAND-DFGSVEEFEQLMCELPVWAKGLPVTSEGFECLRYRK 601 >gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30] gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30] Length = 653 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 237/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A] gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A] Length = 653 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 236/706 (33%), Positives = 338/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D PV D P Sbjct: 1 MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + +V A N+ FER L FN ++P W CT+V GLP++L VG Sbjct: 61 YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L L +QK + GK LI F CK RN P H + W+ F +YC DV V Sbjct: 121 EVLNLQNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ +EQ+ W LDQ INDRG + +L N++ + + +L ++ +T Sbjct: 181 SIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + + + LK WL E GL + +L + T Q L K T +A Q+ R++ S+++ Sbjct: 240 GLENPNSPSQLLK-WLNEEQGLDIPNLQKKTVQEYL---KYATGKAKQMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M D R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELNIARDFIK 354 Query: 348 ------TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + D P ++S VR+ A EG L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + A+ F V + K R GKV ELALGYQGG A + M + G++ Sbjct: 415 FNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMGALDMGID 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + LV + WR+ + + Sbjct: 475 ESELQGLVDS-----------------------------------------WRKANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W A +T+ + + R YMK K L++ LPSGRSL Y VG N Sbjct: 494 AFWKGCQDAAIETVRTRQTHLTHGLR----FYMK--KGFLMIELPSGRSLAYPKARVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ T+ TYGGKL ENIVQA +RD+LA M AG+ IV VH Sbjct: 548 SWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E PD + ++M+ WA+GL L ++G+ S Y K Sbjct: 608 DEVIVEIPDGSG-GLKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652 >gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] Length = 653 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 236/706 (33%), Positives = 337/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYL---KRATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M +D R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P D + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIP-KDSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] Length = 653 Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 237/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] Length = 567 Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 225/575 (39%), Positives = 294/575 (51%), Gaps = 64/575 (11%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F EY + DV R++ KRL S E LW+LDQTINDRG VD LA V Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L E+LT G V ++ + L L E G+ L D+ + T +R L + L P Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL--DDPLLP 120 Query: 272 QAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + + ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 331 RPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 RP+ S + I + + D D + + S +RSC+IA KKLVVADL+ IE R Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFD-DVMALTSSALRSCLIAPTHKKLVVADLSNIEGR 239 Query: 388 VLAWMAGEQWKLKAFE----------------------------------------TGED 407 VLAW+AGE KL AF G+D Sbjct: 240 VLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDD 299 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y YA SF +AP VTK QR IGKV ELALGY GG AF A+ ++L A + Sbjct: 300 IYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--Q 357 Query: 468 TNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 P ++A +W + N P + D AC+ K+AWR H ++ W L Sbjct: 358 AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQF 416 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT 582 A I + + + M+ + L + LPSGR L Y D SY+ T Sbjct: 417 AATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGT 471 Query: 583 --TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDEI+ E D Sbjct: 472 HPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNA 531 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 532 AFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2] gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2] Length = 650 Score = 312 bits (800), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 237/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 SQK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIANK 182 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T GL + Sbjct: 183 IKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV + WR + + W Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577 +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGENSWGSQ 549 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ R+ ++ TYGGKL ENIVQA +RD+LA + GY IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEVIV 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P + +M WAKGL L ++G+ S Y K Sbjct: 610 EIPRGSN-GLKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649 >gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A] gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A] Length = 650 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 236/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG+ KY AED +++ A+ D P+ D P + K Sbjct: 3 IDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIANK 182 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T GL + Sbjct: 183 IKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q L K T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV + WR + + W Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577 +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGENSWGSQ 549 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIV 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P + +M WAKGL L ++G+ S Y K Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47] gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47] gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH60] gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 653 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 237/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L SQK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4] gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Lactobacillus gasseri ATCC 33323] gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4] Length = 644 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 229/704 (32%), Positives = 346/704 (49%), Gaps = 90/704 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +PQ + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + W C+ V + + GLP +L VG L L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL---ESLTYGL 229 LE P+S E E +++DQ INDRG +D L +N + + DQ L + LT GL Sbjct: 181 LERFPVSQNEWENYWMDQDINDRGIRIDQQL---VNNAIKCQENFHDQYLQVSQKLT-GL 236 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + L+ LK WL + G++++ L++ + ++L + T + QV + R S+S+V Sbjct: 237 ANPNSPLQ-LKDWLN-QRGMNIDSLSKASVAQLLQTT---TGKVHQVLSLRQLLSKSSVK 291 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQII----- 343 K + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S EE +++ Sbjct: 292 KYQAMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNT 351 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 T L S PD ++S +R+ I S+G VAD + +EARV+AW++GE+W+ KAF Sbjct: 352 TALSMLYDSVPD---VLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFA 408 Query: 404 TGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLN 460 ED+Y + ++ F V + V + R GK+ ELALGY G A + M +T GL Sbjct: 409 NNEDIYCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATNLGLTEE 468 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 LV+ WR + + Sbjct: 469 ELHSLVQM-----------------------------------------WRNASPHIVQF 487 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRS 578 W ++ +A ++ I K+ + + + +Y + L L SGR L Y +G NR Sbjct: 488 WWDIDKAAKECI---KSHLPQATHGIKFIYR---SGCMFLRLRSGRKLCYSKPKIGINRF 541 Query: 579 YLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + T ++ R TYG KL ENIVQA SRD+LAE M AG +V+ +HDE Sbjct: 542 GSESITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDE 601 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V + P ++ + +MT P WA GL L A G+ S Y+K Sbjct: 602 AVIDAPAN--YSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643 >gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 132] Length = 653 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 236/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 567 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 227/575 (39%), Positives = 295/575 (51%), Gaps = 64/575 (11%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F EY + DV R++ KRL S E LW+LDQTINDRG VD LA V Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L E+LT G V ++ + L L E G+ L D+ + T +R L + L P Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL--DDPLLP 120 Query: 272 QAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + + ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 331 RPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 RP+ S + I + + D D + + S +RSC+IA KKLVVADL+ IE R Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDVVFD-DVMALTSSALRSCLIAPTHKKLVVADLSNIEGR 239 Query: 388 VLAWMAGEQWKLKAF----------------------------------------ETGED 407 VLAW+AGE KL AF G+D Sbjct: 240 VLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDD 299 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y YA SF +AP VTK+QR IGKV ELALGY GG AF A+ ++L A + Sbjct: 300 IYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--Q 357 Query: 468 TNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 P ++A +W + N P + D AC+ K+AWR H ++ W L Sbjct: 358 AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ- 415 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT 582 F T G A + + Y + L L LPSGR L Y D SY+ T Sbjct: 416 -FAATDAIGHPETAHTCCGITVQY---SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGT 471 Query: 583 --TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDE++ E D Sbjct: 472 HPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNA 531 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 532 AFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 567 Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 224/575 (38%), Positives = 294/575 (51%), Gaps = 64/575 (11%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F EY + DV R++ KRL S E LW+LDQTINDRG VD LA V Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L E+LT G V ++ + L L E G+ L D+ + T +R L + L P Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL--DDPLLP 120 Query: 272 QAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + + ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 331 RPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 RP+ S + I + + D D + + S +RSC+IA KKLVVADL+ IE R Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFD-DVMALTSSALRSCLIAPTHKKLVVADLSNIEGR 239 Query: 388 VLAWMAGEQWKLKAFE----------------------------------------TGED 407 VLAW+AGE KL AF G+D Sbjct: 240 VLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDD 299 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y YA SF +AP VTK QR IGKV ELALGY GG AF A+ ++L A + Sbjct: 300 IYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--Q 357 Query: 468 TNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 P ++A +W + N P + D AC+ K+AWR H ++ W L Sbjct: 358 AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQF 416 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT 582 A I + + + M+ + L + LPSGR L Y D SY+ T Sbjct: 417 AATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGT 471 Query: 583 --TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDE++ E D Sbjct: 472 HPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNA 531 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 532 AFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] Length = 666 Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 237/715 (33%), Positives = 334/715 (46%), Gaps = 98/715 (13%) Query: 4 LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQV----L 57 L+ID ET S +D+ G+ KYAE D V+L A+ DD VEL D + Q + Sbjct: 6 LYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVGV 65 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 + LE+ + AHN++FE LK ++ I RW CT+V G P++L+ +GEAL Sbjct: 66 RRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEALD 125 Query: 118 L--SSQKMEEGKELIARFCK---------GETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + K+ GK LI FCK G T RN P H E W LF EYCK DV Sbjct: 126 MPEDKAKLRTGKALINYFCKPCKPTKTNGGRT------RNLPKHASEKWELFREYCKRDV 179 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI-VDVERTKLDQELES 224 V REI K L + W D +N RG VD AL I +V+ LD ++ Sbjct: 180 EVAREIDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDT-IKR 238 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 +T V + R ++ WL + L + + +L S+ LT A V Sbjct: 239 ITG--VDNPRSRAQVLDWLNDTLDEEITSLNAASVKALLESD--LTDDARAVLTAWQGLG 294 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 +++ K TL A D R+RG LQF GASRTGRW+G + P NLPR + L+Q Sbjct: 295 KTSTKKYETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYN--LNQAGE 352 Query: 345 HLPTSITSDPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + D + L +S +R+C + EG K V+ D + IEARVLAW+AGE W L Sbjct: 353 LVKAGHKKDIELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVL 412 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAST 454 + F+ +Y T AR +N+ + + K R GK+ LALGYQG A ++M ++ Sbjct: 413 EEFKGDGKIYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMGAS 472 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 ED F + +AWR + Sbjct: 473 ----------------------------------------EDEFTDDELRGLVRAWRVAN 492 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK----DKNNLILMLPSGRSLVY 570 ++ELW + T+ + + +P+ + + NL + LPSGR L Y Sbjct: 493 PCIAELWRYTEMMAKSTVSD--EFYSGTNPMIPISFKSTLNAVNGINLAIGLPSGRELYY 550 Query: 571 RD---VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD 623 + V Y + T T+E TYGGKL ENIVQA++RD+LA+ + TK G + Sbjct: 551 HNPVIVDGAIYYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGIN 610 Query: 624 --IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IVL VHDE+V E E +L + ++ PSWA+GLPLK E + S Y+K Sbjct: 611 AHIVLHVHDEVVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665 >gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 653 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 236/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] Length = 650 Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 236/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 SQK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIANK 182 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T GL + Sbjct: 183 IKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV + WR + + W Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577 +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGENSWGSQ 549 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIV 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P + +M WAKGL L ++G+ S Y K Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] Length = 653 Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 235/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] Length = 726 Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 224/703 (31%), Positives = 348/703 (49%), Gaps = 85/703 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET S ++T G+ Y + + ++LFA+ D V+L D +P + Sbjct: 80 IKILSIDIETYSDNEITN-GVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL ++++ A N+ FER + L + +W CT + A GLP++L++ GE LKL Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +K+ EG ELI F CK RN P H + W F YC DV V + I ++ Sbjct: 199 KHKKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQRK 258 Query: 175 -----LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L P++ E+ L+ DQT+ND+G C+D LA+ ++ D + +L E++ +T Sbjct: 259 VCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN-- 316 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +LK WL + G ++ L + + + + + + + + R +S+++V Sbjct: 317 LENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGASEDVKRVLYL---RSMSSKTSVK 373 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 K + A SD +L LQF GA +TGRW+G + NLPR S L + + Sbjct: 374 KYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVK---- 428 Query: 350 ITSDPDPLQ--------IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +D + L+ I+S +R+ IA E L V D + IEARV+AW+AGE+W+LK Sbjct: 429 -KNDFELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKV 487 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F +Y + AR F V +T D R GK+ ELALGY+GGA A + M + Sbjct: 488 FRGSGRIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGADK---- 543 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 M + PE A ++ WR + + Sbjct: 544 -------------------------MGLSDPEIA-----------QIVSGWRNSSPNIVK 567 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNN 576 LW ++ +A ++ I + + I K + L++ +K N L + LPSGR L Y + V N Sbjct: 568 LWRDVERAAKEAILSDRII---KLKQGGLIF-RKTSNILQIKLPSGRLLSYPLAKIVDNK 623 Query: 577 RSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 Y+ N TTRQ TYGGKL ENIVQA++RD L E ++ K GY+I VHDEI+ Sbjct: 624 ICYMSQNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIA 683 Query: 635 ETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P TDE ++ + ++ + ++A LPLK EGY + Y K Sbjct: 684 EVP-TDESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725 >gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL] gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL] Length = 650 Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 234/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ P+++ EQ W DQ INDRG + +L N + + +L + + +T GL + Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT-GL-EN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV + WR + + W Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577 +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P + +M WAKGL L ++G+ S Y K Sbjct: 610 EIPRGSN-GLKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649 >gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01] Length = 653 Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 235/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGVR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719] gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719] gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] Length = 653 Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 235/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] Length = 653 Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 235/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11] Length = 650 Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 236/701 (33%), Positives = 335/701 (47%), Gaps = 85/701 (12%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCV---HDPVMP--QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D ++PV + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 SQK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QSQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMTIANK 182 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T GL + Sbjct: 183 IKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT-GL-EN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV + WR + + W Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577 +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ R+ ++ TYGGKL ENIVQA +RD+LA + + + IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEVIV 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P + +M WAKGL L ++G+ S Y K Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224] gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224] Length = 653 Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT++ + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] Length = 650 Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 234/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ P+++ EQ W DQ INDRG + +L N + + +L + + +T GL + Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT-GL-EN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV + WR + + W Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577 +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 496 CQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P + +M WAKGL L ++G+ S Y K Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JKD6159] gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] Length = 650 Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 234/701 (33%), Positives = 333/701 (47%), Gaps = 85/701 (12%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID ET S D++KCG KY AED +++ A+ D + D P + K Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ P+++ EQ W DQ INDRG + +L N + + +L + + +T GL + Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT-GL-EN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356 Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV + WR + + W Sbjct: 477 GLVDS-----------------------------------------WRNANPNIVNFWKA 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR---- 577 +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 496 CQEAAINTVKSRKTHHTHGVR----FYMK--KGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P + +M WAKGL L ++G+ S Y K Sbjct: 610 EIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] Length = 653 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AE+ +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] Length = 653 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 234/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ + EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +R++LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] Length = 655 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 243/713 (34%), Positives = 336/713 (47%), Gaps = 97/713 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TLF D E+ S L K G+ YAE D ++LF + D P+E+ D + +P + Sbjct: 1 MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 AL + V AHN+ FER L A P +W CT++ + GLP +L Sbjct: 61 AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNHRE-AWRLFGEYCKGDV 165 AV LKL QK GK+LI +FC T L RN P+ W F +Y + DV Sbjct: 121 DAVATVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I RL P+ E + + LDQ IND G +D L + + R + Sbjct: 181 EVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLARAQ 240 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT GL + + ++ LK WL G L+ L + L + T +V R Sbjct: 241 TLT-GLENPNSPIQ-LKQWL-ASRGCVLDSLAKAEVDAALDTA---TGTVKEVLGLRGDL 294 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K + SDGR RG +QF GA RTGR++G + QNLPR +LDQ Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPR--NYLPDLDQAR 352 Query: 344 THLPTSIT--------SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T + T S PD L S +R+ I S G + +VAD + IEARV+AW+AGE Sbjct: 353 TLVRTGNLEALELLHESVPDTL---SQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGE 409 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMA 452 L+AF G+DLY T +R F V P + V + R GK+ LA G+ G A ++M Sbjct: 410 TTTLQAFREGKDLYCETASRMFGV-PVEKHGVNGELRQKGKLAVLACGFGGSTGALERMG 468 Query: 453 S-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + T GL EH ++ + AWR Sbjct: 469 ALTMGL--------------------------------AEHELKPIV---------DAWR 487 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + + LW + +A I + ++I R R + L + LPSGR L Y Sbjct: 488 AANPHIVALWAGVEEAAIAAIASRQSIRLRNLR------FSVEAGILFIELPSGRRLAYV 541 Query: 572 D--VGNNR-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +G NR TT R+ + TYGGKLTENIVQA++RD+L GM KAG+ Sbjct: 542 KPRLGENRWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGH 601 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ VHDEIV + P+ F A+ LM++ P+WA+GLPL A+GYE YRK Sbjct: 602 QIVMHVHDEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] Length = 653 Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WA+GL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652 >gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3] gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3] Length = 653 Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R Y+K K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYIK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] Length = 653 Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 234/706 (33%), Positives = 335/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AE+ +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus CGS03] Length = 653 Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 234/706 (33%), Positives = 336/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ + EG +L V+D + IEARV+AW A E+W+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82] Length = 975 Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 180/448 (40%), Positives = 257/448 (57%), Gaps = 15/448 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R +AS ++ K L++ Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRQQASTTSTSKYKALMKG 303 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 363 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF TG DLY Sbjct: 364 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 423 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELA 438 YA+++ + +VTKDQR IGKV+ELA Sbjct: 424 LAYAKAYGIEVERVTKDQRQIGKVLELA 451 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 17/244 (6%) Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI-EDLF 498 GY GG AF A L+L+ A+ N + +A+++ + + + E +F Sbjct: 740 GYGGGVSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVF 799 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK--KDKN 556 I AC+ +K+ WR+ H + W EL E+T+ + IA ++ + Y+K +D Sbjct: 800 I--ACDSLKRLWRRAHPATCDFWYEL----ERTV---RTAIATPQKTLYCGYLKIRRDGA 850 Query: 557 NLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 L + LPSGR++ Y N +Y+ N+ +R+ R TYGGKL EN+ QA +RD+LA Sbjct: 851 WLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLA 910 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671 M AGY IVLTVHDEI+ E PD+ +++A + L+ + P WA +PL A G+ES Sbjct: 911 GNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESY 970 Query: 672 RYRK 675 RYRK Sbjct: 971 RYRK 974 >gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] Length = 644 Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 236/698 (33%), Positives = 329/698 (47%), Gaps = 83/698 (11%) Query: 4 LFIDFETRS--PIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 L ID ET S PI K G +Y +D ++LFA+ FDD PVE+ D DP +P+ + + Sbjct: 3 LSIDVETYSDCPI---KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMTKDP-LPERVVD 58 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 AL N ++T A N+ FE LK F D W CT VLA LP++L V +AL+L Sbjct: 59 ALYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLG 117 Query: 120 SQKMEEGKELIARFC--KGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE 176 K GK LI F + T RN P + E W + EY + DV V R I KRL Sbjct: 118 EAKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRLL 177 Query: 177 PLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L + E E W LDQ IN RG VD+ L D E + E + GL + + Sbjct: 178 SLKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACND-EIVEEATESSKILTGLENPNS 236 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++ LK WL G LE + + +L+ + + +V NR S++ K + Sbjct: 237 TMQ-LKEWLTARLGYDLETMRKDDVSNLLAQD--IPSDVRKVLQNRQVLGNSSIKKYLAM 293 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 A+ SDGR+ G LQF GA R+GRW+G V QNLPR E+LD L + Sbjct: 294 KNAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPR--NYLEDLDTARDVLKSRDVEML 351 Query: 355 D-----PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D P +I +R+ ++A +G + +VAD + IEARV+AW+A E+W+ F G D+Y Sbjct: 352 DLLYGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIY 411 Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + + F+V + V R GKV ELALGY GG A + M S + Sbjct: 412 CASASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKGEI---------- 461 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 PE + + +AWRQ R+++ W + A Sbjct: 462 ----------------------PEKELPGII---------EAWRQASPRITKFWKDADSA 490 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNR-------- 577 +Q + G+ + R + K K L + LPSGR L Y +G N+ Sbjct: 491 AKQVVRTGEPV----RIIQGNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEY 546 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 ++ R TYGGKL ENIVQAV+RD LA M+ +KAGY IV +HDE+V E P Sbjct: 547 DGMDQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAP 606 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M W +GL L A G+E+ Y K Sbjct: 607 -IGVGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643 >gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31] gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31] Length = 656 Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 234/718 (32%), Positives = 342/718 (47%), Gaps = 106/718 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G KYA +D ++LFA+ D V++ D +P + Sbjct: 1 MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 + L++ A+N+ FE L ++ P+ +W CT+V G + L A+G A+ L Sbjct: 61 DLLKDETCIKYAYNAVFEWWCLNMA-GIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119 Query: 119 --SSQKMEEGKELIARFC------KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 +K+ G LI FC K + RN P+H E W LF EYC DV Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRT---RNLPHHAPEKWELFKEYCIQDVVTEM 176 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 EI +RL P+ +E +LW LD +N G VD L + I + R L +E +T Sbjct: 177 EIGRRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDITK 236 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E G +E+L + T +++ + +A +V R S+++ Sbjct: 237 --LDNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDD--GKAKRVLEIRQELSKTS 291 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD------- 340 V K + EAM D R+RG LQF GA+RTGR++G + QNLPR E LD Sbjct: 292 VKKYKAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPR--NYIETLDVARDVIK 349 Query: 341 ----QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +++ L +I PD L S +R+ I SEG VV+D + IEARV+AW+AGE+ Sbjct: 350 KGDGELLEMLYGNI---PDTL---SQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEE 403 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKM 451 W+++ F+T +Y + ++ F V + K + RA GKV ELALGYQG A M Sbjct: 404 WRMEVFKTHGKIYEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAM 463 Query: 452 -ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 A+ GL EE +D + W Sbjct: 464 GAADMGLT-------------DEEMKD----------------------------IVDRW 482 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAII---ARKRRDVPLVYMKKDKNNLILMLPSGRS 567 R+ R+ ELW L A + +E G+ I + ++ +Y ++ + LPSGR Sbjct: 483 RKSSKRIVELWYALENAAVEVLETGEPQIVKCVKLAKEYDFIY---GQDFFTIELPSGRK 539 Query: 568 LVY-------RDVGNNRSY---LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 L Y G + + +N TT++ TYGGKLTENIVQA++RD LAE ++ Sbjct: 540 LFYPKPFLKENQFGQMQMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRV 599 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 G+ IV VHDEI+ + P + E + MT SWAKGL L A G+ Y K Sbjct: 600 KAKGWPIVFHVHDEIILDVPKSVELEEVI--KTMTEEISWAKGLILNAAGFTGSYYMK 655 >gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358] Length = 653 Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 235/702 (33%), Positives = 336/702 (47%), Gaps = 84/702 (11%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S +DL CG+ +YA + LF++ F D PV D V+P + AL Sbjct: 5 LHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKVLRAL 64 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLD---IPIHRWICTLVLARSNGLPSALKAVGEALKL 118 + VAHN+ FER + + LD + W CT+V GLP +L +G+AL L Sbjct: 65 RDPKRIKVAHNAQFERVCI--GYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKALGL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK +EGK LI F CK +N P H E W +G+Y + DV V I + Sbjct: 123 DVQKDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETGISDK 182 Query: 175 LEP---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L L + E + DQ IND G VDV ++ D + + +L LT V Sbjct: 183 LAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG--VE 240 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVL 289 S +++LK W + G +E L + C+ L+ + + P+ ++ A +AV Sbjct: 241 SVTKVQQLKAWAAAQ-GYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGGAAVA 299 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD---QIITHL 346 K + ++ + DG ++G L+F GA T RW+G QNLPR ++L+ QI+ Sbjct: 300 KYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQIVAKG 359 Query: 347 PT-SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 T + +P+ +I+ VR+ + + V+D + IEARV+AW AGE W LKAFE G Sbjct: 360 KTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKAFEDG 419 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED+YV T ++ ++V + + R GK LALGYQGGA A M + Sbjct: 420 EDIYVATASKMYHVT-GEEAEAMRQKGKQATLALGYQGGANALIVMGA------------ 466 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 ++ PE + +L + WR+ + + LW+ + Sbjct: 467 -------------------LRAGIPEEELPELV---------QLWRKANPNIVNLWHTVD 498 Query: 526 QAFEQTIENGKA---IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSY 579 +A I NG A ++A + ++ K D++ L + LPSGR L Y D N SY Sbjct: 499 KAARMAINNGGAKRYVLADGKL---VISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKISY 555 Query: 580 LNTTTRQLTREY--TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE---IVC 634 L +R Y TYGGKLTEN+VQA SRD+L +M AG V VHDE IV Sbjct: 556 LKGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIVP 615 Query: 635 ETPDTDEFNASMLYHLMTS-NPSWAKGLPLKAEGYESKRYRK 675 E +E N +LMTS P WA GLPL +EG K YRK Sbjct: 616 EGTKIEEIN-----NLMTSPAPEWADGLPLDSEGDVIKYYRK 652 >gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 244/711 (34%), Positives = 328/711 (46%), Gaps = 95/711 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LF+D ET SP++LTK G+ YAE D V+LF + D +PV++ D +P + Sbjct: 1 MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108 EAL + VT A N+ FER L A P +W CT+V + GLP + Sbjct: 61 EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKP-NHREAWRLFGEYCKGD 164 L+ V L L +K GK+LI RFC L RN P + + W F Y + D Sbjct: 121 LEQVATVLDLPVRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNRRD 180 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I RL P+ E + LDQ IND G +D L Q R Sbjct: 181 VEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLARA 240 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT GL + + ++ LK WL G L+ LT+ L + T + +V R Sbjct: 241 QELT-GLENPNSPIQ-LKDWLTAH-GTPLQSLTKDEVAAALDTA---TGEVREVLQLRGE 294 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH--EELD 340 ++S+V K T+ DGR RG LQF GA RTGR++G + QNLPR E D Sbjct: 295 LAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEARD 354 Query: 341 QIITHLPTSI----TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + T ++ S PD L S +R+ + ++G + VVAD + IEARV+AW+AGE Sbjct: 355 LVRTGEFEAVELLYDSVPDTL---SQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEA 411 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 L+AF G+DLY T +R F V + + R GK+ LA GYQGG A + M + Sbjct: 412 TTLQAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGAL 471 Query: 455 -TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 GL + LV AWR Sbjct: 472 RMGLAESELQPLV-----------------------------------------DAWRAA 490 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--R 571 + V +LW +++ A IE AI R+ V + + + + LPSGR L Y Sbjct: 491 NPNVVQLWADINAA---AIE---AISTRQPTGVGALTFTVESGIMFVRLPSGRRLAYVKP 544 Query: 572 DVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 +G NR T R+ + TYGGKLTENIVQAV+RD+L GM +AGY I Sbjct: 545 KLGENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRI 604 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V+ VHDEIV ET + LM + P WA GLPL A+GY Y K Sbjct: 605 VMHVHDEIVVETATA---TVDEICELMATAPDWAAGLPLAADGYACDFYMK 652 >gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 649 Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 230/716 (32%), Positives = 337/716 (47%), Gaps = 109/716 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L +D ET SP +L G+ +YAED ++LF + D P ++ D +P + Sbjct: 1 MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 +AL + VT A N+ FER + A P W CT+V A S GLP +L Sbjct: 61 QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 +AL+L +K G++LI RF G+ + + P W+ + Y + DV V Sbjct: 121 DGAAKALRLPIEKDPAGQKLIRRFSIPGKDGIRVLPSDDP---VGWQQYISYNRRDVDVE 177 Query: 169 REIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++ RL P+ E E ++LDQ IND G +D LA ++ R + LT Sbjct: 178 VQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQLT 237 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 GL + + ++ LK WL G LE LT+T + L + +T +V R SRS Sbjct: 238 -GLENPNSPIQ-LKDWLAAH-GCELESLTKTEVEAALET---VTGDVAEVLRLRQDLSRS 291 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------PSRS---- 335 +V K ++ SD R RG +Q++GA RTGR++G + QNLPR +RS Sbjct: 292 SVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNA 351 Query: 336 --HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + L+ + + LP ++ S +R+ I S+ + +VAD + IEARVLAW+A Sbjct: 352 GNSDALELLYSPLPDTL----------SQLIRTAFIPSKDHRFIVADFSAIEARVLAWLA 401 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQK 450 GE+ L+AF G+DLY T +R F V P + + R GK+ LA GY G A + Sbjct: 402 GEEGTLQAFREGKDLYCQTASRMFGV-PVEKHGANSELRQKGKIAVLACGYGGSVGALKA 460 Query: 451 MAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 M + GL+ + LV A Sbjct: 461 MGALRMGLDESELKPLV-----------------------------------------DA 479 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 WR + V + W+++ QA T+E R V +++ L + LPS R L Sbjct: 480 WRDANPMVVQFWHDIEQAAITTVET------RTPTQVGRIHLSYRSGCLFIALPSRRELC 533 Query: 570 Y--RDVGNNR--------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 Y +G NR ++ TTR+ TYGGKLTEN+VQA +RD+L M + Sbjct: 534 YPRPRLGENRFGMTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDA 593 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AG+ IV+ +HDEIV + P TD + + LMT P+WA GLPL A+GYE Y K Sbjct: 594 AGHRIVMHIHDEIVVDEP-TDGASVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648 >gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] Length = 631 Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 226/668 (33%), Positives = 319/668 (47%), Gaps = 84/668 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L SQK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ K R YMK K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607 Query: 630 DEIVCETP 637 DE++ E P Sbjct: 608 DEVIVEIP 615 >gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] Length = 645 Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 225/715 (31%), Positives = 343/715 (47%), Gaps = 114/715 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL+KCG+ KYA V+LF + D V + D +P+ + Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL +T VT A N+ FER L + W CT+V + + GLP +L++ G AL L Sbjct: 64 SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK+ EGK+LI FC + RN+P H E W F Y DV +I KR Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVETEMQIQKR 183 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E ++LDQ INDRG VD+ L + R +L L+ LT GL + Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQELT-GL-DN 241 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLKL 291 ++++K WL + GL T+T ++V++ + P+ ++ V + R + ++S+V K Sbjct: 242 PNSVQQMKQWL-ADHGLE----TDTLGKKVVAELVRSAPEPLKTVLSLRQQLAKSSVKKY 296 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS-------------HEE 338 + A+ +DGR G QF GA+RTGR+SG + QNLP+ S +E Sbjct: 297 AAMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMRGGNYEA 356 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + + +P ++ S +R+ + +G+K +VAD + IEARV+AW AGE+W+ Sbjct: 357 ISMLYEDIPDTL----------SQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWR 406 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LK FE G+D+Y + ++ F+V + V R GK+ ELALGY G A + M + Sbjct: 407 LKVFEDGDDIYSASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGA--- 463 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK---KAWRQK 513 L +G A E ++ AWR Sbjct: 464 ----------------------------------------LEMGLAEEELQPLVDAWRTS 483 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL----VYMKKDKNNLILMLPSGRSLV 569 + +++ W ++ +A ++ + ++ VP+ ++ L + LPSGR L Sbjct: 484 NPMITQFWWDVDRAVKECV----------KKRVPMESHGLHFDYRSAMLFITLPSGRRLA 533 Query: 570 YRD--VGNNR------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 Y +G N+ +Y+ + ++ R +YG K ENIVQ +RDIL M Sbjct: 534 YVKPRIGENQFGRESVTYMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMRTLRNC 593 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDEI+ E + S + M PSWAKGL L+A+GYE + Y+K Sbjct: 594 A--IVAHVHDEIIIEA--DRRMSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644 >gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] Length = 644 Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 225/700 (32%), Positives = 340/700 (48%), Gaps = 82/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL K G+ +YAE D ++LF + D PV++ D +P+ ++ Sbjct: 1 MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +A+ + +VT A N+ FER L F + + W CT+V + GLP +L+ Sbjct: 61 QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTGA 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +K+ +GKELI F CK RN P H E W F Y DV V I ++ Sbjct: 121 DKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQEK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L+ P+ +E + LDQ INDRG +D+ L Q + R +L L+ LT + + Sbjct: 181 LQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKL 291 + ++K+WL E GL + L + + + +L K P+ + +V R ++S+V K Sbjct: 239 PNSVVQMKSWLS-EKGLETDSLDKASVKALL----KEAPEHLSEVLELRQLLAKSSVKKY 293 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPT 348 + A+ +DGR RG LQF GA+RTGR++G + QNLP+ S E + + H Sbjct: 294 TAMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDA 353 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 I D P ++S+ +R+ + +G K +VAD + IEARV+AW+AGE W+ + F T Sbjct: 354 LEILYDSIP-GVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + ++ F V +VTK R GK+ ELALGY G A + M + GL Sbjct: 413 IYEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEELKP 472 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 LV AWR + + LW ++ Sbjct: 473 LV-----------------------------------------YAWRNANPNIVRLWWDV 491 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR----- 577 +A ++ A+ R R + + + L++ LPSGR L Y +G N Sbjct: 492 DRAVKE------AVTERCRTETHRIRFEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEA 545 Query: 578 -SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 +Y T++ R +YG K ENIVQA+SRD+L M N ++G +IV+ VHDE+V E Sbjct: 546 VTYEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLE 605 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P E + LM P WA GL L+A+G+E Y+K Sbjct: 606 VP--LEICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643 >gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 222/703 (31%), Positives = 339/703 (48%), Gaps = 88/703 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L+N ++ A N+ FER L + W C+ V + + GLP +L+ +G L L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+ E E +++DQ INDRG +D L + + +V + Q + LT GL + Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT-GLANP 239 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + L+ LK WL + G+ L++ + ++L + T QV R S+S+V K Sbjct: 240 NSPLQ-LKDWL-QQQGIKTNSLSKASVAQLLQTT---TGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH-----L 346 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S EE +++ L Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F E Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTFA 463 D+Y + ++ F V + + + R GK+ ELALGY G A + M +T GL + Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELP 471 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV+ WR + + W + Sbjct: 472 PLVQM-----------------------------------------WRNASPHIVQFWWD 490 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577 + +A ++ I K + + + +Y + L L SGR L Y +G NR Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPQPKIGINRFGSE 544 Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +++ T ++ R TYG KL ENIVQA SRD+LAE M G +V+ +HDE V Sbjct: 545 SITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVI 604 Query: 635 ETPDTDEFNASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P FN S+ + LMT P WA GL L A G+ S Y+K Sbjct: 605 DAP----FNRSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643 >gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 649 Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 216/720 (30%), Positives = 338/720 (46%), Gaps = 117/720 (16%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S ++L K G+ +YAE D ++LF + D V++ D +P + Sbjct: 1 MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 AL + V A N+ FER L + + W CT++ A + GLP +L+ VG Sbjct: 61 NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHR-EAWRLFGEYCKGD 164 L QK+ +GK LI FC G T RN P+H E W++F Y K D Sbjct: 121 VLGFKKQKLSQGKNLIKYFCIPCSPTKSNGGRT------RNLPHHDIEKWKMFTFYNKRD 174 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLD 219 V I +L P+S E + ++LDQ IND G +D V A + ++ E K Sbjct: 175 VETEMAIQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKA 234 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 +EL L + +LK WL L+ G+ + L++ +L + +A+ + Sbjct: 235 KELTGL-----ENPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQDSDGEIHEALSI--- 285 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------- 331 R + ++S+V K ++ + SD R RG +QF GA+RTGR+SG + QNLP+ Sbjct: 286 RQQLAKSSVKKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQ 345 Query: 332 -----PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 S + LD + +P+ ++S+ +R+ I G + +VAD + IEA Sbjct: 346 ARSLVKSGNFTALDLLYDSIPS----------VLSELIRTAFIPRYGSRFIVADFSAIEA 395 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGG 444 RV+AW+AGE+W++ F G D+Y + ++ FNV + + R GK+ ELALGY G Sbjct: 396 RVIAWLAGERWRIDVFAGGGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGS 455 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A + M AI+ + + Sbjct: 456 VGALKAMG----------------------------------------AIQMGLVEDELK 475 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + AWR + ++ LW + +A + ++ + I ++ + + L + LPS Sbjct: 476 PIVDAWRNSNPNITSLWWRIDRAVKTVVKTKQPI------EIYGIGIFYQSGILFIKLPS 529 Query: 565 GRSLVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR L Y +G NR +Y T++ R +YG K ENIVQA+SRDILAE M+ Sbjct: 530 GRRLAYVKPLIGENRFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAML 589 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + IV+ VHDE+V E P+ + + +M+ P+WAKGL L A+GYE + Y+K Sbjct: 590 KLATHEFQIVMHVHDEVVIEAPNKVS-SVEEICRIMSETPAWAKGLILNADGYECEFYKK 648 >gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916] gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916] Length = 653 Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 235/707 (33%), Positives = 345/707 (48%), Gaps = 87/707 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET +D+ G KY E ++L A+ +DD PV++ D ++ +P+VL+ Sbjct: 1 MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60 Query: 59 EAL--ENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + + V A N+ FER +KA F L W CT+V A + GLPS+L VG+A Sbjct: 61 FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120 Query: 116 LKL--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTR 169 LK QKM+EGK LI FCK RN P H E W F EYCK DV V R Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180 Query: 170 EIFKRLEPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 EI L + KE+ELW LDQ INDRG VD+ L + + + +L +E +LT Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL ++ +LK W+ G + LT+ + ++ +K + ++ R ++++ Sbjct: 240 GL-NNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKNVK--KILELRQLMAKTS 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH- 345 + K T++ A D R+RG LQF GA+RTGRW+G + QNLP+ EE ++ + Sbjct: 297 IKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNG 356 Query: 346 ----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + S PD L S +R+ I ++G + +VAD + IEARV+A++A EQW+L Sbjct: 357 DFETIEFLFDSIPDTL---SQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDV 413 Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F+ G D+Y + ++ F V + + RA GK+ ELALGY G A + Sbjct: 414 FKEGGDIYCASASKMFKVPVEKHGINGHLRAKGKIAELALGYGGAGGAIRAFD------- 466 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 KT S P+ EDL ++ WR+ +++ Sbjct: 467 -------KTGSIPD---------------------EDL------PKLVSDWRKASPHITQ 492 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--------- 570 W + +A ++ I + + +Y D L + LPSGR L Y Sbjct: 493 FWWNVDKAAKKAITEKTTVAL--HHGIKFIY---DPGVLFIQLPSGRKLSYLRPKIEEGK 547 Query: 571 --RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 DV + T++Q R TYG KL ENIVQA +RD LAE M K G+ +V+ V Sbjct: 548 FGSDVITYEG-MEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHV 606 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDE+V + + + + + + WA GLPLKA+GYE Y K Sbjct: 607 HDELVLDV-SKEIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652 >gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6] gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6] Length = 645 Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 222/709 (31%), Positives = 348/709 (49%), Gaps = 99/709 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID E+ S D++KCG KY+E D ++LFA+ D PVE+ D +P+ + Sbjct: 1 MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 ++L + V A N+ FER L L+ + W CT+V A + GLP +L VG L Sbjct: 61 KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVT 166 L QK+ EGK+L+ FC +G T RN P H + WR F Y DV Sbjct: 121 GLDKQKLSEGKDLVRYFCMPCNATKVNQGRT------RNLPRHSLDKWRDFVAYNIRDVE 174 Query: 167 VTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V I ++L P++ + E ++LDQ INDRG +D+ LA + + +V + +++++L+ Sbjct: 175 VEVAIQQKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKK 234 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL--SSNKKLTPQAIQVFNNRMR 282 LT GL + + L+ +++WL + GL +E L + + ++ +++ KL +V R + Sbjct: 235 LT-GLENPNSVLQ-MRSWLS-QHGLEVESLGKAAVKELIEQTNDDKLK----EVLLLRQQ 287 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH----EE 338 ++S+V K + D R RG QF GA+RTGR++G QNLP+ S E Sbjct: 288 LAKSSVRKYQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARE 347 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 L + + ++ D P +++S+ +R+ I G K +V+D + IEARV+AW+AGE+W+ Sbjct: 348 LVRNGEYELLALLYDNVP-EVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWR 406 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TT 455 + F G D+Y + ++ F V + V R GK+ ELALGY G A M + Sbjct: 407 KEVFRNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMGALNM 466 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 GL + LV + WR+ + Sbjct: 467 GLTEDELQPLVAS-----------------------------------------WRETNP 485 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--V 573 +++LW ++ A + + G + + + + + + L SGR L Y + Sbjct: 486 AITKLWWDIDSAAKGCVSVG------AKTETHGITFEYKSGFMFIQLLSGRRLAYVKPRI 539 Query: 574 GNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 G NR +Y TT++ R +YG K ENIVQA++RDIL M N Y IV Sbjct: 540 GQNRFGGAAVTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNLKD--YRIVG 597 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ E P E + +M+ P+WAKGL L A+GYE Y+K Sbjct: 598 HVHDEVIIEVP--KEVTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644 >gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016] gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 644 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 217/701 (30%), Positives = 332/701 (47%), Gaps = 84/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M ++ ID ET S +L KCG+ +YAE D ++LF + D V++ D +P + Sbjct: 1 MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + VT A N+ FER L NL + W C++V + GLP +L+ VG L Sbjct: 61 NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P H + W F Y DV I Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMSIQ 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ ++LDQ INDRG +D+A ++ + R KL ++ +T + Sbjct: 181 QRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITN--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVL 289 + ++++K WL + GL + L + +L K P+ + V R + ++S++ Sbjct: 239 ENPNSIQQMKEWL-ADNGLETDSLGKKAVAEML----KTAPEPLGTVLELRQQLAKSSIK 293 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT- 348 K + A+ +DGR RG QF GA+RTGR+SG + QNLP+ E + + Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353 Query: 349 ---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++ D P +++S+ +R+ + EG K +VAD + IEARV+AW+AGE+W++ F+ G Sbjct: 354 DALTLIYDSIP-EVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNG 412 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ FNV + V R GK+ ELALGY G A + M + Sbjct: 413 GDIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMGAL--------- 463 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 E IE+ + + AWRQ + +++LW + Sbjct: 464 ---------------------------EMGIEE----EELQPLVTAWRQSNPNITKLWWD 492 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GN 575 + A + + K I + + +Y L ++LPSGR L Y G Sbjct: 493 VDHAVKTCV---KQKIPTETHGIKFIY---QSGMLFIVLPSGRRLSYVKPRMGENVFGGE 546 Query: 576 NRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + +Y T++ R +YG K ENIVQA+SRDIL M T IV VHDEI+ Sbjct: 547 SVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIII 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + S + M P+WA GL L A+GYE + Y+K Sbjct: 605 EA--DMRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643 >gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 644 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 223/702 (31%), Positives = 343/702 (48%), Gaps = 86/702 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVH-DPVMPQVL 57 M L ID ET S +L + G+ +YA+ D ++LF + D PV++ D + + PQV+ Sbjct: 1 MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K AL++ + A N+ FER L + + W C+ V + + GLP +L+ VG L Sbjct: 61 K-ALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLG 119 Query: 118 LSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFK 173 L QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI + Sbjct: 120 LPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQ 179 Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +LE P+ E E +++DQ INDRG +D L + + +V + Q + LT GL + Sbjct: 180 KLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKKLT-GLAN 238 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + L+ LK WL + G+ + L++ + ++L + T QV R S+S++ K Sbjct: 239 PNSPLQ-LKDWLH-QQGIKTDSLSKASVAQLLQTT---TGTVHQVLALRQLLSKSSIKKY 293 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH----- 345 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S EE +++ Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 L S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F Sbjct: 354 LAMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKN 410 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTF 462 ED+Y + ++ F V + + + R GK+ ELALGY G A + M +T GL + Sbjct: 411 EDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDEL 470 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV+ WR + + W Sbjct: 471 PPLVQM-----------------------------------------WRNASPHIVQFWW 489 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR--- 577 ++ +A ++ I K + + + +Y + L L SGR L Y +G NR Sbjct: 490 DVDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPQPKIGINRFGS 543 Query: 578 ---SYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 +++ N T ++ R TYG KL ENIVQA SRD+LA M AG +V+ +HDE V Sbjct: 544 ESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAV 603 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P TD + + +MT P WA GL L A G+ Y+K Sbjct: 604 IDAP-TDR-SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] Length = 645 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 229/717 (31%), Positives = 336/717 (46%), Gaps = 115/717 (16%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L +D ET S +DL+KCG+ KY+E D ++LFA+ D PVE+ D D +P + Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 +L + V A N+ FER L LD + W CT+V + GLP +L VG L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHREA-WRLFGEYCKGDVT 166 L QK+ EGK+LI FC G T RN P+H W F Y DV Sbjct: 121 GLDKQKLTEGKDLIRYFCVPCNPTKVNGGRT------RNLPHHAPTKWSAFKTYNSRDVE 174 Query: 167 VTREIFKRLEP---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +L L S +E W LDQ INDRG +D Q+ ++ + L+Q+L+ Sbjct: 175 VEIAIQGKLSNFPVLDSVWKEYW-LDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQ 233 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT GL + + L+ ++ WL L+ GL E L + +L + + QV R + Sbjct: 234 ELT-GLENPNSVLQ-MRGWL-LDHGLETESLGKKAVAELLE--QPIDENLKQVLVLRQQL 288 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS-------- 335 ++S+V K + SD R RG QF GA+RTGR++G QNLP+ S Sbjct: 289 AKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSL 348 Query: 336 -----HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 E L+ + ++P ++S+ +R+ + EG K +V+D + IEARV+A Sbjct: 349 VKQSNFEMLNILYGNVPN----------VLSELLRTAFVPREGMKFIVSDFSAIEARVIA 398 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAF 448 W++GE+W+ + F+ G D+Y + ++ F V + V R GK+ ELALGY G A Sbjct: 399 WLSGEKWRQEVFKNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 458 Query: 449 QKM-ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + M A GL + LV + Sbjct: 459 KAMDALEMGLTEDELQPLVNS--------------------------------------- 479 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 WR + ++ELW + +A + ++ R+ + + L + L SGR Sbjct: 480 --WRDSNINITELWWAVDKAVKTCVKE------RRSTSTHGIKFEYKSGFLFIQLLSGRK 531 Query: 568 LVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 LVY +G N+ +Y T++ R +YG K ENIVQA++RDIL M N Sbjct: 532 LVYVKPKIGENKFGGEAVTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLR 591 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 K Y IV VHDE++ E P E + LM+ P WA+GL L A+GYE + Y+K Sbjct: 592 K--YRIVGHVHDEVIIEVP--MESKVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644 >gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 644 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 219/710 (30%), Positives = 323/710 (45%), Gaps = 102/710 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID E+ S DL K G+ +YAE D ++LFA+ D PV + D +P V++ Sbjct: 1 MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL + V A N+ FERT L N I W C++V + GLP +L+ Sbjct: 61 QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTGA 120 Query: 119 SSQKMEEGKELIARFCKGETHECL---YDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +K++EGK+LI FCK + +RN P+H E W F Y + DV + I + Sbjct: 121 DKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQDK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + P+ +E + LDQ INDRG +D R L L +LT + + Sbjct: 181 ISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRTLTK--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + ++K WL E G+ L + +L S + +V R + ++S+V K Sbjct: 239 PNSVMQMKDWL-AEQGVETGALDKAAVHELLKSAQG---DVAEVLTIRQKLAKSSVKKYT 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SRSHEEL 339 + + D R RG +QF GA+R+GR++G + QNLP+ + + E L Sbjct: 295 AMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEAL 354 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 D + +P ++S+ +R+ I E + +VAD + IEARV+AW+AGE W+ Sbjct: 355 DMLYPSVP----------DLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRN 404 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGL 457 + F T +Y + ++ FNV ++ K R GK+ ELALGY G A + M + Sbjct: 405 EVFATHGKIYEASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMGA---- 460 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK---KAWRQKH 514 L +G E +K +AWRQ + Sbjct: 461 ---------------------------------------LDMGVEEEELKPLVQAWRQAN 481 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---- 570 ++ + W + QA + KA+ R + L++ LPSGR L Y Sbjct: 482 PKIVQFWWAVDQAAQ------KAVKQRTTTSTHGISFTYQSGLLLVGLPSGRHLSYVKPT 535 Query: 571 ---RDVGNNRSYLN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 D G T++ R TYG KL ENIVQAVSRD+LA M + GY IV Sbjct: 536 IVLNDFGREGLCFEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIV 595 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + VHDE+V E S + LMT P W+ GL LKAEGY Y+K Sbjct: 596 MHVHDEVVVEA--KQHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643 >gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] Length = 643 Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 225/702 (32%), Positives = 335/702 (47%), Gaps = 96/702 (13%) Query: 6 IDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 +D ET S D+ K G+ KYA ED ++ ++ + V L D + P+ LK + N Sbjct: 5 LDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLTKEE-FPEFLKNHILN 62 Query: 64 TDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEALK 117 D T A N+ FER L F W +V A+ GLP++L+ L Sbjct: 63 ADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERCASYLG 122 Query: 118 LSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFK 173 L QK GK LI F CK RN P H E W +GEY DV I + Sbjct: 123 LEEQKDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVVTQMAIAE 182 Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +LE P+ +E + + DQ INDRG +D L + DV+ L EL+++T Sbjct: 183 KLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITGLANP 242 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 +SR +L WL E G LT+ ++ L + + + +++ +++ + S++ K Sbjct: 243 NSRA--QLLPWL-KEHGYSANGLTKADVEQELKTAEGELKRVLEL---KLQTAMSSLKKY 296 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + AM SDGR+ G LQF GASRTGRW+G V QNL R ++LD ++ Sbjct: 297 EAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLAR--NYIKDLDDARGYVKKR-- 352 Query: 352 SDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 D D ++I+ D VR+ ++A +G V+D + IEARV+AW AGEQW+L F Sbjct: 353 -DIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFS 411 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 T +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M + LN+ Sbjct: 412 THGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA---LNMG--- 465 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++E + ++D WR+ + ++ + W + Sbjct: 466 ---------------------VKEEELQGLVDD-------------WRRANKKIVQFWKD 491 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNN 576 + +A + I++ I K R + K L + LPSGR+L Y D G+ Sbjct: 492 VQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDK 545 Query: 577 RSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 Y + T + TYGGKL ENIVQA +RDILAE ++ AG+ +V VHDE + E Sbjct: 546 IIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE 605 Query: 636 TPD--TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +E N LM P WA+GLPL +EGY +K Y K Sbjct: 606 GSGLTIEEVN-----DLMAQAPDWAEGLPLNSEGYVTKYYMK 642 >gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON] gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON] Length = 657 Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 224/717 (31%), Positives = 335/717 (46%), Gaps = 103/717 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LFID ET S DL K G+ +Y+E D V+LF + DD V + D +P + Sbjct: 1 MRELFIDIETYSGTDLGKSGVYRYSEAPDFEVLLFGYCADDDEVRVIDLASGEALPTEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVL-----KACFNLD--------IPIHRWICTLVLARSNGL 105 +AL + V AHN+ FER L + NL + W CT+V + GL Sbjct: 61 DALTDETVVKWAHNAQFERVCLSRWLERQGINLKALNGNSNFLNPASWRCTMVWSAYLGL 120 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYC 161 P +L+ QK+ EGKELI F CK RN P H + W + EY Sbjct: 121 PLSLEGAALVTGAEKQKLTEGKELIRYFSSPCKPTKSNGGRTRNLPVHAPDKWEKYKEYN 180 Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 DV I KRL P+ E + + LDQ INDRG C+D+ L + RT L Sbjct: 181 ARDVETEMAIMKRLSKFPVPEDEWKYYILDQEINDRGICLDMDLIREAIRCDRRSRTVLT 240 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFN 278 + + +T + + + ++K W F E GL E L + + +L K P++ +V Sbjct: 241 EAVRDITD--LDNPNSVAQMKAW-FAENGLETETLGKAAVKELL----KTAPESFREVLA 293 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++S+V K + A+ SDGR+RG LQF GA+RTGR++G + QNLP Sbjct: 294 LRQDLAKSSVKKYTAMENAVCSDGRVRGLLQFYGANRTGRFAGRLIQVQNLP-----QNH 348 Query: 339 LDQIITHLPTSITSDPDPLQIISDCV--------RSCVIASEGKKLVVADLAGIEARVLA 390 L ++ + D D L+I+ D V R+ + G K +VAD + IEARV+A Sbjct: 349 LPDLVQARQLVKSGDFDALEILYDSVPGVLSELIRTAFVPMPGYKFIVADFSAIEARVIA 408 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAF 448 W+AGEQW+ + F + +Y + ++ F V ++TK R GK+ ELALGY G A Sbjct: 409 WLAGEQWRNEVFASHGKIYEASASQMFRVPIEEITKGSPLRQKGKIAELALGYGGSVGAL 468 Query: 449 QKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + M + GL + LV Sbjct: 469 KAMGALDMGLAEDELQPLV----------------------------------------- 487 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 AWR + ++ LW ++ +A + + + A + ++ Y L + LPSGR Sbjct: 488 TAWRAANPNITRLWWDVDRAAKTAV---REKTAEQTHNILFEYR---SGFLFITLPSGRK 541 Query: 568 LVYRD--VGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L Y + NR ++ T ++ R +YG K ENIVQA+SRDIL M + Sbjct: 542 LAYVKPRIEANRFGSDSITYEGVGASKKWERIESYGPKFVENIVQAISRDILCYAMQRLS 601 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 G+ IV+ +HDE+V ET + + + ++ +M+ P WA+GL L A+G+E + Y+K Sbjct: 602 SMGFSIVMHIHDEVVIET--SCDVSPEIVCRIMSETPPWAEGLFLCADGFECQFYKK 656 >gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 644 Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 220/702 (31%), Positives = 339/702 (48%), Gaps = 86/702 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVH-DPVMPQVL 57 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D + + PQV+ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K AL++ + A N+ FER L + + W C+ V + + GLP +L+ VG L Sbjct: 61 K-ALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLG 119 Query: 118 LSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFK 173 L QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI + Sbjct: 120 LPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQ 179 Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +LE P+ E E +++DQ INDRG +D L + + +V + Q + LT GL + Sbjct: 180 KLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT-GLAN 238 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + L+ LK WL + + L++ + ++L + T QV R S+S++ K Sbjct: 239 PNSPLQ-LKDWL-QQQDIKTNSLSKASVAQLLQTT---TGTVHQVLALRQLLSKSSIKKY 293 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH----- 345 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S EE +++ Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 L S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F Sbjct: 354 LAMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKN 410 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTF 462 ED+Y + ++ F V + + + R GK+ ELALGY G A + M +T GL + Sbjct: 411 EDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDEL 470 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV+ WR + + W Sbjct: 471 PPLVQM-----------------------------------------WRNASPHIVQFWW 489 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR--- 577 ++ +A ++ I K + + + +Y + L L SGR L Y +G NR Sbjct: 490 DVDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPQPKIGINRFGS 543 Query: 578 ---SYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 +++ N T ++ R TYG KL ENIVQA SRD+LAE M +V+ +HDE V Sbjct: 544 ESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAV 603 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + + LMT P WA GL L A G+ S Y+K Sbjct: 604 IDAPSNRSLDT--MVQLMTEVPDWANGLILNAAGFVSDFYKK 643 >gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 645 Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 228/706 (32%), Positives = 331/706 (46%), Gaps = 93/706 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M ++ ID ET S + L K G+ KYAE D ++LF + D V++ D + +P+ + Sbjct: 1 MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + VT A N+ FER L + + + W C+++ A + GLP +LK VG L L Sbjct: 61 AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 QK+EEGK+LI F CK RN P + E W+LF EY K DV I R Sbjct: 121 DRQKLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQAR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTL------NQIVDVERTKLDQELESLT 226 L+ P+ E E + +DQ INDRG VD ++ V +ER + +LE+ Sbjct: 181 LKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQNLTDLENPN 240 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 L +L WL GL +E L ++ ++L K T +V R + S++ Sbjct: 241 SPL--------QLMDWLH-GKGLSVESLAKSEVTKML---KTATGDVREVLELRQQLSKT 288 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 +V K + +D R RG QF GA+RTGR++G + QNLP+ + +L ++ T + Sbjct: 289 SVKKYMAMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLA--QLKEVRTLV 346 Query: 347 PTSITSDPDPL-----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D L ++S +R+ + + VVAD A IEARVLAW+AGEQW L Sbjct: 347 KDGDFELLDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDV 406 Query: 402 FETGEDLYVTTYARSFN--VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLN 458 F D+Y T +R F+ V D R GK L+ GY G A M + +G+ Sbjct: 407 FREHGDIYCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMGAVESGMK 466 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 LV DL WR + + Sbjct: 467 EEELQPLV-----------------------------DL------------WRASNPHIV 485 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 + W ++ +A + + K + + + VY L + LPSGR L Y +G N Sbjct: 486 QFWWDVDRAVKTCV---KRRVEVETHGIRCVY---KSGVLFIRLPSGRELAYAKPRIGEN 539 Query: 577 RSYLNTTTRQ---LTREY----TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R + T + +T+++ T+GGKL ENI Q +RD+L M G+DIV+ VH Sbjct: 540 RFGGESVTYEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVH 599 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DEIV E P + + +M NP WAKGLPLKA+GYE + YRK Sbjct: 600 DEIVLEVP-YGVSSVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644 >gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] Length = 645 Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 223/713 (31%), Positives = 335/713 (46%), Gaps = 110/713 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL+KCG+ KYA V+LF + D V + D +P+ Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL +T VT N+ ER L + W CT+V + + GLP +L++ G AL L Sbjct: 64 SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK+ EGK+LI FC + RN+P H E W F Y DV +I KR Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQKR 183 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E ++LDQ INDRG VD+ L I R +L + LT + + Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRELTE--LEN 241 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKL 291 +++K WL + GL T+T ++ ++ K P+ + +V + R + ++S+V K Sbjct: 242 PNSAQQMKQWL-ADHGLE----TDTLGKKAVAELVKTAPEPLREVLSLRQQLAKSSVKKY 296 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SRSHEE 338 + A+ +D R G QF GA+RTGR+SG + QNLP+ S ++E Sbjct: 297 TAMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEA 356 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 L + +P ++ S +R+ + +G+K +VAD + IEARV+AW AGE+W+ Sbjct: 357 LSVLYEDIPDTL----------SQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWR 406 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LK FE G D+Y + ++ F+V + V R GK+ ELALGY G A + M + Sbjct: 407 LKVFEDGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGA--- 463 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK---KAWRQK 513 L +G A E ++ AWR Sbjct: 464 ----------------------------------------LEMGLAEEELQPLVDAWRGS 483 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM--LPSGRSLVYR 571 + +++ W ++ +A + I R+R ++ D + +L LPSGR L Y Sbjct: 484 NPMITQFWWDVDRAVKDCI--------RQRIPTETHGLRFDYRSAMLFINLPSGRRLAYV 535 Query: 572 D--VGNNR------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +G N+ +Y+ + T++ R +YG K ENIVQ +RDIL M T Sbjct: 536 KPRIGENQFGGESVTYMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQ--TLKNC 593 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDEI+ E + + + M P WAKGL L+A+GYE + Y+K Sbjct: 594 SIVAHVHDEIIIEA--DRRMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644 >gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 662 Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 227/725 (31%), Positives = 342/725 (47%), Gaps = 114/725 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S IDL KCG+ KYAE + ++LF + D V++ D +PQ + Sbjct: 1 MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFN-----LDIPIHR----------------WICTL 97 +AL + +VT A N+ FER L + LD P H W C++ Sbjct: 61 DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLD-PFHDNHPLSTECARFLNPEGWRCSM 119 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EA 153 V A + GLP +LK VG+ LKL QKM+EGK LI F C RN P H E Sbjct: 120 VWAATMGLPLSLKGVGQVLKLEDQKMDEGKALIKYFSVPCAPTKANGGRTRNMPFHDPEK 179 Query: 154 WRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F Y K DV V I +RL P+ + + +DQ INDRG +D+ L ++ Sbjct: 180 WETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLVAKAIEMD 239 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 RT+L ++ +T + + ++++K WL + GL T++ ++V++ K P Sbjct: 240 TRSRTELTTAMKDITE--LDNPNSVQQMKQWLS-DNGLE----TDSLGKKVVAELIKTAP 292 Query: 272 QAIQ-VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 +Q V R + ++S+V K T+ A+ DGR RG F GA+RTGRW+G + QNLP Sbjct: 293 SELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQLQNLP 352 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLA 382 + L+ + + D D ++++ S +R+ I +G +L V+D + Sbjct: 353 Q-----NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFS 407 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALG 440 IEARV+AW AGE W+ K F G D+Y + ++ F+V + V R GK+ ELALG Sbjct: 408 AIEARVIAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALG 467 Query: 441 YQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G A + M + GL+ + LV Sbjct: 468 YGGSVGALKAMGAIEMGLSEDELPPLV--------------------------------- 494 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 AWRQ + + + W ++ +A + +++ + L + + L Sbjct: 495 --------DAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYG-----LTFSCR-SGMLF 540 Query: 560 LMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDIL 610 + LPSGR+L Y VG N+ +Y T++ R +YG K ENIVQA SRDIL Sbjct: 541 ITLPSGRNLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDIL 600 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 M T +IV+ +HDE+V E + +L M P WA+GL L+A+GY + Sbjct: 601 CYAM--KTLRNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRADGYTT 656 Query: 671 KRYRK 675 Y+K Sbjct: 657 PFYKK 661 >gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 647 Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 218/700 (31%), Positives = 332/700 (47%), Gaps = 86/700 (12%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 +L +D ET S ++L K G+ +YAE D ++LF + D V++ D +P + A Sbjct: 6 SLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEIINA 65 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L + VT A N+ FER L NL + W C++V + GLP +L+ VG L L Sbjct: 66 LMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVLGL 125 Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ EGK+LI FC RN P H + W F Y DV I +R Sbjct: 126 EKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEMLIQQR 185 Query: 175 LEPLSSKEQELW---YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L E +W +LDQ INDRG +D+ ++ + R KL ++ +T + Sbjct: 186 LSKFQVPEN-IWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITN--LE 242 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLK 290 + ++++K WL + GL T++ ++V++ K P+ + V R + ++S+V K Sbjct: 243 NPNSVQQMKDWL-ADNGLE----TDSLGKKVVAEMLKTAPEPLGTVLELRQQLAKSSVKK 297 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A+ SDGR RG QF GA+RTGR+SG + QNLP+ E + + Sbjct: 298 YTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 357 Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 ++ D P +++S+ +R+ I EG K +VAD + IEARV+AW+AGE+W+L F+ G Sbjct: 358 ALTLLYDSIP-EVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGG 416 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 D+Y + ++ FNV + V R GK+ ELALGY G A + M + Sbjct: 417 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMGAL---------- 466 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 E IE+ + + AWRQ + +++LW ++ Sbjct: 467 --------------------------EMGIEE----EELQPLVTAWRQSNPNITKLWWDV 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNT 582 +A + + K + +Y L ++LPSGR L Y +G N + Sbjct: 497 DRAVKTCV---KQKTPTATHGIKFIY---QSGMLFIVLPSGRRLAYVKPRMGENMFGSES 550 Query: 583 T-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 T++ R +YG K ENIVQA+SRDIL M T IV VHDEI+ E Sbjct: 551 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIIIE 608 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + S + M P+WA GL L A+GYE + Y+K Sbjct: 609 ADMG--MSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646 >gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 221/701 (31%), Positives = 333/701 (47%), Gaps = 84/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L + G +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + W C+ V + + GLP +L+ VG L L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + + Q + LT GL + Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLT-GLANP 239 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + L+ LK WL + G+ + L + + ++L + T QV R S+S+V K Sbjct: 240 NSPLQ-LKNWLH-QQGVETDSLAKASVAQLLQTT---TGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQII-----THL 346 + +AM DG + G LQF GA+RTGRW+G + QNLPR S EE ++ T L Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+G VAD + +EARV+AW++GE+W+ AF E Sbjct: 355 AMLYESVPD---VLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTFA 463 D+Y + ++ F V + + + R GK+ ELALGY G A + M +T GL + Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELP 471 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV+ WR + + W + Sbjct: 472 PLVQM-----------------------------------------WRNASPHIVQFWWD 490 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR---- 577 + +A ++ I K + + + +Y + L L SGR L Y +G NR Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPQPKIGINRFGSE 544 Query: 578 --SYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +++ N T ++ R TYG KL ENIVQA SRD+LA M AG +V+ +HDE V Sbjct: 545 SITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVI 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P TD + + +MT P WA GL L A G+ Y+K Sbjct: 605 DAP-TDR-SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] Length = 653 Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 230/713 (32%), Positives = 321/713 (45%), Gaps = 99/713 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LFID ET SP++L G+ YA+ ++LF + D PVE+ D + +P+ + Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108 AL + V A N+ FER L + P +W CT+V + GLP + Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY---DRNKP-NHREAWRLFGEYCKGD 164 L V L L +K GK+LI +FC T RN P + + W F Y + D Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I RL PL + E + + LDQ +ND G +D L R Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT GL + + ++ LK WL H L T V ++ T Q +V R Sbjct: 241 QELT-GLENPNSPIQ-LKDWL----AAHGAPLQSLTKDEVAAALDTATGQVREVLLLRGE 294 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++S+V K + DGR RG LQF GA RTGR++G + QNLPR L + Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPR-----NYLPDL 349 Query: 343 ITHLPTSITSDPDPLQIISDCV--------RSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T D + ++++ D V R+ I ++G + VVAD + IEARV+AW+AG Sbjct: 350 AEARSLVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAG 409 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMA 452 E L+AF G+DLY T +R F V + + R GK+ LA GYQGG A + M Sbjct: 410 ETTTLEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG 469 Query: 453 ST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + GL + LV AWR Sbjct: 470 ALRMGLAESELQPLV-----------------------------------------DAWR 488 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570 + V +LW +++ A +TI R+ V + + + + LPSGR L Y Sbjct: 489 AANPSVVQLWADINAAAIETIST------RQPTSVGALTFTVESGIMFIRLPSGRRLAYV 542 Query: 571 -RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +G NR TT R+ + TYGGKLTENIVQAV+RD+L M +AG+ Sbjct: 543 KPKLGENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGH 602 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ VHDEIV ET + LM++ P WA GLPL+A+GY Y K Sbjct: 603 RIVMHVHDEIVVETATA---TVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652 >gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 233/709 (32%), Positives = 319/709 (44%), Gaps = 91/709 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LFID ET SP++L G+ YA+ ++LF + D PVE+ D + +P+ + Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108 AL + V A N+ FER L + P +W CT+V + GLP + Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY---DRNKP-NHREAWRLFGEYCKGD 164 L V L L +K GK+LI +FC T RN P + + W F Y + D Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I RL PL + E + + LDQ +ND G +D L R Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT GL + + ++ LK WL H L T V ++ T Q +V R Sbjct: 241 QELT-GLENPNSPIQ-LKDWL----AAHGAPLQSLTKDEVAAALDTATGQVREVLLLRGE 294 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSH-EE 338 ++S+V K + DGR RG LQF GA RTGR++G + QNLPR P + Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354 Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 L + + + D P +S +R+ I ++G + VVAD + IEARV+AW+AGE Sbjct: 355 LVRTGNYDAVELLYDSVP-DTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATT 413 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-T 455 L+AF G+DLY T +R F V + + R GK+ LA GYQGG A + M + Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRM 473 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 GL + LV AWR + Sbjct: 474 GLAESELQPLV-----------------------------------------DAWRAANP 492 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV 573 V +LW +++ A IE AI R V + + + + LPSGR L Y + Sbjct: 493 NVVQLWADINAA---AIE---AISTRLPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKL 546 Query: 574 GNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 G NR TT R+ + TYGGKLTENIVQAV+RD+L GM +AG+ IV+ Sbjct: 547 GENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRIVM 606 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDEIV ET + LM P WA GLPL A+GY Y K Sbjct: 607 HVHDEIVVETATA---TVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652 >gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] Length = 656 Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 224/719 (31%), Positives = 334/719 (46%), Gaps = 108/719 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ETRS ID+ K G KYA+ D ++LFA+ +++ PV++ D + +P L Sbjct: 1 MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL + +V A+N+ FE L C + PI +W CT+ G + L A G+A+ L Sbjct: 61 QALADPNVIKHAYNAAFEWYCLN-CAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119 Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 QK+ GK LI FC K N+P H + W LF EYC DV REI Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 KRL+ P+ +E+ LW +D +N G VD L I + +L E SLT GL Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLT-GLQ 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVL 289 + + + L+ WL + G ++L + T +L + P ++ + R + ++++ Sbjct: 239 NPNSAAQLLQ-WL-RDNGTEADNLQKATVAELLGG---INPNKVRRMLEIRQQLGKTSIK 293 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSH 336 K + A R+RG Q+ GA+RTGRW+G + QNLPR ++++ Sbjct: 294 KYVAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNY 353 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + + + ++P ++ S +R+ I S G K VVAD + IEARV+AW+AGEQ Sbjct: 354 DGVRILYGNVPDTL----------SQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQ 403 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKM 451 W + F T +Y T ++ F V ++ K R GKV LALGYQGG A M Sbjct: 404 WVNEVFATHGKIYEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAM 463 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + +Q E + D+ + WR Sbjct: 464 GA-------------------------------LQMGLTEEELPDIV---------QRWR 483 Query: 512 QKHSRVSELWNELHQAFEQTIENGK-----AIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 Q + R+ LW + A +E + +I D+ +Y ++ L + LPSGR Sbjct: 484 QANPRIKGLWYAIENAALAVMETAQPQGINGLIFALEGDI--IY---GQSFLTVRLPSGR 538 Query: 567 SLVYRD--VGNNR----SYLNTTTRQLTREY----TYGGKLTENIVQAVSRDILAEGMMN 616 L Y + NR + T Q TR++ TYGGK+ ENIVQA++RD LA + Sbjct: 539 KLFYPKPFLKENRFEKMAVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLER 598 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 G +V VHDE++ + P E + LM WA GL LK G+ES Y K Sbjct: 599 IASKGLQVVFHVHDEVIIDAP--METTVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655 >gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] Length = 646 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 216/704 (30%), Positives = 330/704 (46%), Gaps = 88/704 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL K G+ +Y E D ++LF + D V++ D + +P + Sbjct: 1 MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 +AL + DVT A N+ FER L L + W CT+V + GLP +L+ G Sbjct: 61 DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI F CK RN P H + W F Y DV Sbjct: 121 VLGLEKQKLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETEMA 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++L P+ ++LDQ INDRG +D+ L ++ + R+KL + LT Sbjct: 181 IQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELTE- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + + ++K WL + GL + L + +L + + + +++ R ++S+V Sbjct: 240 -LENPNSVVQMKQWLS-DHGLETDTLGKKAVVELLKTASEPLGKVLEL---RQSLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + + +DGR RG QF GA+RTGRW+G + QNLP+ +L+Q + + + Sbjct: 295 KKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQ--NHMPDLEQARSLVRS 352 Query: 349 S------ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + D P +++S+ +R+ + +G K +VAD + IEARV+AW+AGE+W+ + F Sbjct: 353 GNFAALEMLYDSVP-EVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVF 411 Query: 403 ETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 E+G D+Y + ++ F+V + V R GK+ ELALGY G A + M Sbjct: 412 ESGGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMG-------- 463 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A+E + + AWR + ++ L Sbjct: 464 --------------------------------ALEMGLEEEELQPLVSAWRSSNPKIVRL 491 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRS 578 W ++ +A KA+ R + + + LPSGR L Y +G NR Sbjct: 492 WWDIDRAAM------KAVRERTTTETHGIRFSYQSGMFFITLPSGRRLAYVKPRIGQNRF 545 Query: 579 YLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + T ++ R +YG KLTENIVQA SRDIL M N IV+ VHDE Sbjct: 546 GSDCITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNLRHC--SIVMHVHDE 603 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV E + + M P WAKGL L+A+GYE+ Y+K Sbjct: 604 IVIEA--DRRMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645 >gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 644 Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 215/701 (30%), Positives = 329/701 (46%), Gaps = 84/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M ++ ID ET S +L K G+ +YAE D ++LF + D V++ D +P + Sbjct: 1 MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + VT A N+ FER L NL + W C+++ + GLP +L+ VG L Sbjct: 61 NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P H + W F Y DV I Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMSIQ 180 Query: 173 KRLEPLSSKEQ--ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +R E E ++LDQ INDRG +D+ + + R KL ++ +T + Sbjct: 181 QRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITN--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVL 289 + ++++K WL + GL T+T ++ ++ K P+ + V R + ++S+V Sbjct: 239 ENPNSVQQMKDWL-ADNGLE----TDTLGKKAVAEMLKTAPEPLGTVLELRQQLAKSSVK 293 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT- 348 K + A+ +DGR RG QF GA+RTGR+SG + QNLP+ E + + Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353 Query: 349 ---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++ D P +++S+ +R+ I EG K +VAD + IEARV+AW+AGE+W++ F+ G Sbjct: 354 DALTLLYDSIP-EVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNG 412 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ FNV + V R GK+ ELALGY G A + M + Sbjct: 413 GDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGAL--------- 463 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 E IE+ + + AWRQ + +++LW + Sbjct: 464 ---------------------------EMGIEE----EELQPLVTAWRQSNPNITKLWWD 492 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GN 575 + +A + + K + + +Y L + LPSGR L Y G Sbjct: 493 VDRAVKTCV---KQKTPTETHGIKFIY---QSGMLFIALPSGRRLAYVKPRMGENMFGGE 546 Query: 576 NRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + +Y T++ R +YG K ENIVQA+SRDIL M T IV VHDEI+ Sbjct: 547 SVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIII 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E +A + M P+WA GL L A+GYE + Y+K Sbjct: 605 EADMGTSLSA--ICEQMAKMPTWANGLLLSADGYECQFYQK 643 >gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium siraeum V10Sc8a] Length = 660 Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 228/737 (30%), Positives = 339/737 (45%), Gaps = 140/737 (18%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ KY E D ++LF + D PV++ D +PQ + Sbjct: 1 MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVL-----------KACFNLD-------IPIHRWICTLVLA 100 AL N +VT A N+ FER L AC+++ + W CT++ + Sbjct: 61 AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK---------GETHECLYDRNKP-NH 150 GLP +L+ VG L L QK+ EGKELI FC+ G T RN P N Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQKLTEGKELIKYFCQPCAPTKANSGRT------RNLPENA 174 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + W F Y DV V I ++L P+ E ++LDQ INDRG +D+ L + Sbjct: 175 PDKWASFKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDL---VR 231 Query: 209 QIVDVE---RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265 Q +D++ R +L ++ LT + + ++++K WL + GL+++ L + +L Sbjct: 232 QAIDMDTRSRAELTAAMKKLT--ALDNPNSVQQMKQWLS-DNGLNVDSLGKKEVAEML-- 286 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K + QV R + ++S+V K + +A+ +DGR RG QF GA+RTGRW+G + Sbjct: 287 -KTAPAELQQVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQ 345 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITS-------DPDPLQII--------SDCVRSCVIA 370 QNLP+ HLP + D D ++++ S +R+ + Sbjct: 346 MQNLPQ------------NHLPDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVP 393 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQ 428 G K +V+D + IEARVLAW AGE W+ + FE G D+Y + ++ F V + V Sbjct: 394 RPGYKFIVSDFSAIEARVLAWFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHL 453 Query: 429 RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R GK+ ELALGY G A + M + GL+ LV Sbjct: 454 RQKGKIAELALGYGGSVGALKAMGALEMGLSEGELQPLV--------------------- 492 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 AWR + + + W ++ +A A+ ++ Sbjct: 493 --------------------TAWRNSNQNIVKFWWDIDRAAMN------AVKYHMDSEIC 526 Query: 548 LVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLT 598 + L + LPSGR L Y +G N+ +Y T++ R TYG KL Sbjct: 527 GIKFSYKSGMLFITLPSGRRLSYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLV 586 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA SRDIL M + I + +HDE+V E + N + M P+WA Sbjct: 587 ENIVQATSRDILCYAMRTLSHCF--ITMHIHDELVIEA--SLGVNLKSICEQMGRTPTWA 642 Query: 659 KGLPLKAEGYESKRYRK 675 GL L+A+GYE+ Y+K Sbjct: 643 NGLKLRADGYETMFYKK 659 >gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [butyrate-producing bacterium SM4/1] Length = 646 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 220/708 (31%), Positives = 322/708 (45%), Gaps = 96/708 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L K G+ +Y E D ++LFA+ D PV+ D +P + Sbjct: 1 MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ VT A N+ FER L + W C++V A GLP +L+ G Sbjct: 61 CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120 Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN P H + W F +Y DV Sbjct: 121 VLGLEKQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETEMS 180 Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I RL P+ E ++LDQ INDRG +D+ L Q+ R++L Q ++ LT Sbjct: 181 IQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELTS- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSA 287 + + ++++K WL + G+ T+T ++ ++ K PQ +Q V R + ++S+ Sbjct: 240 -LDNPNSVQQMKQWL-ADNGVE----TDTLGKKAVAELLKTAPQQLQKVLTLRQQLAKSS 293 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K + A+ +DGR RG QF GA+RTGRW+G + QNLP LD + Sbjct: 294 VKKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLP-----QNHLDDLTEARG 348 Query: 348 TSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 D L+++ S +R+ + +K +VAD + IEARV+AW+A E+W+ Sbjct: 349 LVRAGGFDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQ 408 Query: 400 KAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456 F G+D+Y + ++ F V + V R GK+ ELALGY G A + M + G Sbjct: 409 DVFAEGKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMG 468 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+ + LV AWRQ + + Sbjct: 469 LSEDELPALV-----------------------------------------SAWRQANPK 487 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574 + + W + +A A+ + + L + LPSGRSL Y +G Sbjct: 488 IVQFWWAVDRAVMD------AVTRKTTTKTHGIIFSARNGMLFITLPSGRSLSYVKPKIG 541 Query: 575 NNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 NR +Y T++ R +YG K ENIVQA SRDIL M T IV+ Sbjct: 542 ENRFGGDCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAM--KTLRCCSIVMH 599 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +HDE+V E A + M P WA GL L+A+GYE+ Y+K Sbjct: 600 IHDEVVIEADRRMSLQA--VCDQMGRTPPWANGLQLRADGYETDFYKK 645 >gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] Length = 668 Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 224/723 (30%), Positives = 322/723 (44%), Gaps = 112/723 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEA 60 L ID ETRS +D++K G +YA+ D ++LFA+ +DD PVE+ D D P ++ +EA Sbjct: 6 LSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEEA 65 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL-- 118 L + DV A+N+ FE L P+ +W CT+ G + L A G+A+ L Sbjct: 66 LRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLPQ 124 Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK+ GK LI FC K N+P H + W LF EYC+ DV EI +R Sbjct: 125 DKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEILRR 184 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E+ LW LD +N G VD L + +V KL E LT GL + Sbjct: 185 LNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELT-GL-DN 242 Query: 233 SRCLEKLKTWLFLETGLH------LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 +L W+ H L DL + T + L L ++ R + ++ Sbjct: 243 PNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLGKT 302 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PS 333 +V K + A R+RG Q+ GA+RTGRW+G + QNLPR + Sbjct: 303 SVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELVKA 362 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 ++++ L + ++P ++ S +R+ I SEG K VVAD + IEAR +AW+A Sbjct: 363 KNYDGLRILYGNVPDTL----------SQLIRTAFIPSEGHKFVVADFSAIEARAIAWLA 412 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAF 448 GEQW + F T +Y T A+ F V ++TK R GKV LALGYQG A Sbjct: 413 GEQWVNEVFATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAAL 472 Query: 449 QKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 M + GL + +V Sbjct: 473 IAMGALKMGLTEDELPDIVTR--------------------------------------- 493 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGK-----AIIARKRRDVPLVYMKKDKNNLILML 562 WR + R+ LW + + ++ + +I D L+Y ++ L + L Sbjct: 494 --WRNANKRICGLWYAVENTALRVMQTAQPQGLNGLIFALEGD--LIY---GQSFLTVRL 546 Query: 563 PSGRSLVYRD--VGNNR--------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 PSGR L Y + NR + TR+ + TYGGK+TENIVQA++RD LA Sbjct: 547 PSGRKLYYPKPFLQENRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAV 606 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 + + G V VHDE++ + P E + LM WA GL LK G+ES Sbjct: 607 TLRRIAQKGLQTVFHVHDEVIIDAP--METTVDEICDLMAEPIPWAPGLILKGAGFESSY 664 Query: 673 YRK 675 Y K Sbjct: 665 YMK 667 >gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 650 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 221/718 (30%), Positives = 329/718 (45%), Gaps = 112/718 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L ID ETRS +D+ K G+ +YAE D ++LF + D V++ D + +PQ + Sbjct: 1 MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKAC----------FNLDIPI----------HRWICTLV 98 +AL + V A N+ FER L F+ + P+ H W CT+V Sbjct: 61 DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + GLP +L VG L L QKM EGK LI F HE P + W LF Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQKMNEGKALIRYFSTPPFHE-------PTGAK-WDLFK 172 Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y + DV V I KRL P+ E + LDQ INDRG +D+ L QI + Sbjct: 173 SYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVRTKE 232 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-Q 275 KL L++LT + + + ++K WL E G+ E L + + +L++ P + + Sbjct: 233 KLTDRLKTLTS--LENPNSVTQMKAWL-KEQGVETESLDKKSVTALLAN----VPDPLKE 285 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 V R + ++S+V K + + SDGR RG QF GA+RTGR+SG QNLP+ + Sbjct: 286 VLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLA 345 Query: 336 HEELDQIITH------LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 E + + L S PD ++S +R+ I+ EG+K +VAD + IEARVL Sbjct: 346 DLEYARSLVRQGSFAALELLYESVPD---VLSQLIRTAFISKEGRKFIVADFSAIEARVL 402 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSF--NVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +W+A E+W++ F D+Y T R F NV R GK+ EL+ GY G A Sbjct: 403 SWLAKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVGA 462 Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + + +G+ LV Sbjct: 463 LKAFGALESGMKEEELNPLV---------------------------------------- 482 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 AWR + + + W + +A + I+ + R +Y + + + LP GR Sbjct: 483 -DAWRAANPNIVDFWWAVDRATKDCIKERSTKVTHGIR---FIY---QGSMMFIELPCGR 535 Query: 567 SLVYRD--VGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 L Y +G N+ +Y+ +++ R +YG KL EN+ QA+SRDIL M Sbjct: 536 RLAYVKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQ-- 593 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 T DIV VHDE++ E + + S + M P WA GLPL+A+G+E + Y+K Sbjct: 594 TLRTMDIVAHVHDELIIEC--DERVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649 >gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 658 Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 220/696 (31%), Positives = 326/696 (46%), Gaps = 82/696 (11%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 +L +D ET S ++L++CG+ +Y +D ++L ++ DD V D +P + A Sbjct: 21 SLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVAA 80 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ V A+N+ FERT L A + W CT+V A + GLP +LK VG L L+ Sbjct: 81 LDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLAH 140 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRL--EP 177 QK+ EGK+LI F R++P + AW LF +Y DV V I ++L P Sbjct: 141 QKLAEGKDLIKYFSLPTKTGI---RHQPSDDSAAWALFKQYNARDVEVETTIRRKLSHHP 197 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + + + +DQ INDRG +D LA R + + LT GL + + L+ Sbjct: 198 VPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELT-GLDNPASPLQ 256 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L++WL E G + + + L + +A+++ R S+S+V K + +A Sbjct: 257 -LQSWL-AEQGCKISSMAKEDVDSALDTATGSVREALEL---RQDLSKSSVAKYRKMADA 311 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH------LPTSIT 351 +DGR G LQF GASRTGRW+G + QNLPR + + H L Sbjct: 312 TCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLYP 371 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 S PD L S +R+ I SE + +VAD + IEARVLAW+AGE+ L AF GEDLY Sbjct: 372 SVPDTL---SQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCA 428 Query: 412 TYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 T + F V P + + R GK+ LA GY G A + M Sbjct: 429 TASAMFGV-PVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG---------------- 471 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A++ + + + AWR + + +W+++ Q Sbjct: 472 ------------------------ALKMGLTASELQPIVDAWRAANPNIVAMWHDVDQTA 507 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-- 584 Q AI R + + K L + LPSGR L Y +G NR + T Sbjct: 508 IQ------AITTRSTVTLGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYW 561 Query: 585 -----RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 R+ + TYGGKL ENIVQA +RD+LAE + AG+++V+ +HDE+V + Sbjct: 562 GQGINRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKD 621 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + LM P+WA GLP+ A GY+ Y K Sbjct: 622 SGTTVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657 >gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 662 Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 225/719 (31%), Positives = 339/719 (47%), Gaps = 102/719 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ++L KCG+ KYAE ++LF + D PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF-----NLDIPIHR----------------WICTL 97 +AL + VT A N+ FER L +LD P H W C++ Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLD-PFHDQHPLSKKCARFLNPAGWKCSM 119 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EA 153 V + GLP +L+ VG L L +QKM+EG+ELI FC K RN P H + Sbjct: 120 VWSAYLGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCIPCKETKANGGRTRNLPQHALDK 179 Query: 154 WRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W LF Y K DV V I +RL+ P+ + E ++LDQ INDRG +D+ LA + Sbjct: 180 WNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVALD 239 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 R L L+ T GL + + ++ L WL + GL + L + Q +L + ++ Sbjct: 240 AKSRESLMAALKERT-GLENPNSVIQMLD-WL-EQHGLKTDSLGKKNVQELLKTAQEPLR 296 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + R + ++S+V K + DGR RG QF GA+RTGR++G QNLP+ Sbjct: 297 SVLLL---RQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353 Query: 332 ---PSRSH-EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 P S EL + + + D P ++S +R+ + G K VV+D + IEAR Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIP-DVLSQLIRTAFVPRAGMKFVVSDFSAIEAR 412 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGA 445 V++W+AGE+WK + F G+D+Y +T ++ F V + + + R GK+ ELA GY G Sbjct: 413 VISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSV 472 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 A + M + L++ PE + +L Sbjct: 473 GALKAMGA---LDMGI----------------------------PEEELGNLV------- 494 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 ++WR + + + W ++ A + TI+ + R M L + LPSG Sbjct: 495 --QSWRSANPHIVDFWWQVDGAVKTTIKQRIPVWVNNIRFFCQSGM------LFIELPSG 546 Query: 566 RSLVYRD--VGNNRSYLNTTTRQ---LTREY----TYGGKLTENIVQAVSRDILAEGMMN 616 R L Y +G NR + T + T+++ +YG K ENIVQ +SRDIL M Sbjct: 547 RRLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQT 606 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E P +A + M P WA+GL L+A+GY + Y+K Sbjct: 607 LRCCA--IVGHVHDELIIECPKDTSVDA--ICEEMGRTPPWAEGLVLRADGYACEFYQK 661 >gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] Length = 662 Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 219/729 (30%), Positives = 335/729 (45%), Gaps = 122/729 (16%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M T+ ID ET S +DL KCG+ +Y ++LF + D PV++ D +P+ + Sbjct: 1 MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF-----NLDIPIHR----------------WICTL 97 +AL + V A N+ FER L LD P H W C++ Sbjct: 61 DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLD-PFHDNHPLSLEHARFLNPEGWRCSM 119 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA- 153 V A + GLP +LK VG L+L+ QKM+EGK LI F C RN P+ Sbjct: 120 VWAATMGLPLSLKGVGAVLQLADQKMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPGK 179 Query: 154 WRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F +Y + DV V I ++L P+ + +++DQ INDRG +D+ L + Sbjct: 180 WATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDMD 239 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 R++L ++++++T + + ++++K WL + G+ ++ L + +L K P Sbjct: 240 TRSRSELTEKMQAITN--LENPNSVQQMKQWLS-DNGMEVDSLGKKAVTALL---KTAPP 293 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + +V R + ++S+V K T+ A+ SD R RG F GA+RTGRW+G + QNLP+ Sbjct: 294 ELTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQ 353 Query: 332 -------------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 S +E + I +P ++ S +R+ I +G + V Sbjct: 354 NHLPDLDAARALVKSGDYEAVKMIYEDVPDTL----------SQLIRTAFIPKDGCRFYV 403 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN--VAPAQVTKDQRAIGKVME 436 AD + IEARV+AW AGE+WK AF GED+Y +T R F+ V V + RA GK+ E Sbjct: 404 ADFSAIEARVIAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAE 463 Query: 437 LALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 LA GY G A + M + GL+ + +V + Sbjct: 464 LACGYGGSTGALKAMGALEMGLSEDELPDIVSS--------------------------- 496 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 WR + ++ + W ++ +A ++N K R L + + Sbjct: 497 --------------WRDANQQIVKFWWDVDKAVMAAVKNHKTT-----RLGRLAFFWQ-A 536 Query: 556 NNLILMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVS 606 L + LPSGR+L Y VG NR +Y T++ R +YG K ENIVQA S Sbjct: 537 GMLFITLPSGRNLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATS 596 Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 RDIL M D+ + +HDE+V E + L M P+WA GL L+A+ Sbjct: 597 RDILCNSMKMLRHC--DVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRAD 652 Query: 667 GYESKRYRK 675 GY Y+K Sbjct: 653 GYVCDFYKK 661 >gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] Length = 649 Score = 279 bits (714), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 220/717 (30%), Positives = 342/717 (47%), Gaps = 114/717 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + TL D ET S ++L KCG+ +Y A+D ++LFA+ D V++ D +P ++ Sbjct: 4 IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFN--LDIPIHR------WICTLVLARSNGLPSALK 110 ALE+ V AHN+ FER CF+ L P+ + W CT+ A GLP +L Sbjct: 64 SALEDDKVIKYAHNASFERI----CFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLV 119 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYD----RNKP-NHREAWRLFGEYCKGDV 165 VG L L QKM EGK+LI FC G + RN P + E W F Y DV Sbjct: 120 GVGAVLGLGKQKMTEGKDLIRFFC-GPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDV 178 Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 EI ++L P+ + ++L + IND G VD+ + ++ TKL +++ Sbjct: 179 EAEMEIEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQ 238 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMR 282 +T + + ++++K WL + GL T+T ++ ++ K P+ + +V R + Sbjct: 239 EITE--LDNPNSVQQMKDWLS-DNGLE----TDTLGKKAVAELLKDAPEHLAEVLKLRQQ 291 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-------RPSRS 335 ++S+V K + A+ SDGR+RG FLGA+RTGR+S + QNLP + +RS Sbjct: 292 LAKSSVKKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARS 351 Query: 336 ------HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 E L+ + +P ++ S +R+ + EG K +VAD + IEARVL Sbjct: 352 IVKNGDSEALELLYEDIPDTL----------SQLIRTAFVPKEGNKFIVADFSAIEARVL 401 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447 +W+AGEQW+ + F G D+Y + ++ F V + V R GK+ ELALGY G A Sbjct: 402 SWLAGEQWRNEVFANGGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGA 461 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + M A+E + + Sbjct: 462 LKAMG----------------------------------------ALEMGLEEEELKPLV 481 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 AWR + + + W ++ + ++ I+ K +++ +++ YM L ++LPSGR Sbjct: 482 NAWRASNPNIVKFWWDVDREVKKCIKEKK---SQEVQNIKFHYM---SGMLFIVLPSGRK 535 Query: 568 LVY--RDVGNN------RSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L Y ++G N +Y T++ R +YG K ENIVQA+SRDIL M T Sbjct: 536 LAYVKPNIGENIFGGESVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAM--KT 593 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + IV VHDE++ E + + M+ M P WAKGL L A+GYE Y+K Sbjct: 594 LSTCSIVAHVHDEVIIEADQS--LSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648 >gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 646 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 213/712 (29%), Positives = 332/712 (46%), Gaps = 104/712 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L K G+ +Y E + ++LFA+ D PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ DV A N+ FER L + W C++V A + GLP +L+ VG Sbjct: 61 LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN+P H + W +F +Y DV Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +RL P+ ++ + +++DQ INDRG +D+ L ++ RTKL + ++ +T Sbjct: 181 IQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKEITE- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL + GL + L + +L K P+ QV R + ++S+V Sbjct: 240 -LENPNSVQQMKAWLS-DNGLETDTLGKKAVAELL---KSAPPKLSQVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SRS 335 K + + + +DGR RG QF GA+RTGR+SG QNLP+ S + Sbjct: 295 RKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSGN 354 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 E ++ + +P ++ S +R+ I EG + +VAD + IEAR++AW AGE Sbjct: 355 FEAVELLYEDVPDTL----------SQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGE 404 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +W+ F G D+Y + ++ F V + + R GK+ ELALGY G A + M + Sbjct: 405 KWRQDVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA 464 Query: 454 -TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 GL + LV AWRQ Sbjct: 465 LDMGLTEDELPPLV-----------------------------------------DAWRQ 483 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-- 570 + + + W + A + ++ + L + + L + LPSGR L Y Sbjct: 484 SNPNIVKFWWNVDHAVMEAVK-----FKHTTSEYGLTFSCRS-GMLFITLPSGRKLAYVK 537 Query: 571 RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 +G N+ +Y +T++ R +YG K ENIVQA +RDIL M T Sbjct: 538 PKIGTNKFGGQCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQ--TLRCCS 595 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ +HDE+V E + +A + M P WAKGL L+A+GY + Y+K Sbjct: 596 IVMHIHDEVVIEADPSMSLDA--ICEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 674 Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 227/731 (31%), Positives = 345/731 (47%), Gaps = 130/731 (17%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L +D ET S ++L KCG+ KYAE D ++LF + D V++ D +P+V+ Sbjct: 17 LENLSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 76 Query: 59 EALENTDVTIVAHNSYFERTVLKACF----------------NLDIPIHRWICTLVLARS 102 AL + VT A N+ FER L L + W CT++ + + Sbjct: 77 SALTDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSAT 136 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNH-RE 152 GLP +L+ VG L L QK+ EGK LI FC G T RNK H +E Sbjct: 137 LGLPMSLENVGIVLGLDKQKLTEGKNLIKYFCLPCNPTKVNGGRT------RNKYFHDKE 190 Query: 153 AWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 W F Y K DV V I ++L P+ + +YLDQ INDRG +D + ++ Sbjct: 191 KWEQFKSYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAIKL 250 Query: 211 VDVE-RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 D+E +T L EL+ +T GL + + L+ +++WL + GL +E L + + L K + Sbjct: 251 -DLEVKTHLMSELKRVT-GLENPNSVLQ-MRSWL-KKHGLEMESLGKKEVAKEL---KTV 303 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + +V R + ++S+V K + A D R RG +F GA+RTGR++G + QNL Sbjct: 304 GKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNL 363 Query: 330 PR-------PSRSH------EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 P+ +RS E L+ + +P ++ S +R+ I G K Sbjct: 364 PQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTL----------SQLIRTAFIPRTGLKF 413 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKV 434 +VAD + IEARVLAW+AGE+W+++ F G+D+Y ++ ++ F+V + V R GK+ Sbjct: 414 IVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKI 473 Query: 435 MELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 ELALGY G A + M + GL + LV Sbjct: 474 AELALGYGGSVGALKAMGALDMGLTEDELQPLV--------------------------- 506 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 AWR + V+ LW ++ +A +Q + ++ R +V+ K Sbjct: 507 --------------DAWRSSNPMVTTLWWDVDRAVKQCVHEHVSV-----RTHNIVFTYK 547 Query: 554 DKNNLILMLPSGRSLVY--------RDVGNNRSYLNT-TTRQLTREYTYGGKLTENIVQA 604 LI+ LPS R L Y + G + +Y +T++ R +YG K ENI QA Sbjct: 548 S-GFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQA 606 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664 ++RDIL M T Y IV VHDE + ET + + + LM P WA+GL L+ Sbjct: 607 IARDILIYAMQ--TLKEYRIVAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLR 662 Query: 665 AEGYESKRYRK 675 A+GYE + Y+K Sbjct: 663 ADGYECEFYKK 673 >gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] Length = 662 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 221/725 (30%), Positives = 332/725 (45%), Gaps = 114/725 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S I+L+KCG+ KYAE D ++LF + D V++ D +PQ L Sbjct: 1 MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF-NLDI---PIH----------------RWICTLV 98 +AL + + A N+ FER L +L I P H W C++V Sbjct: 61 DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154 A + GLP +L+ VG L L QK+ EGKELI F C RN+P H E W Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQKLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPEKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---LDQTINDRGYCVDVALAHTLNQIV 211 F Y DV I RL E +WY +DQ INDRG +D+ L ++ Sbjct: 181 DAFKRYNIRDVETEMGIKDRLSKFPVPEA-VWYEYHIDQEINDRGVRIDMDLVTEAIEMD 239 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 RT+L ++ +T + + ++++K WL GL T++ ++V++ K P Sbjct: 240 TRSRTELTSAIKKMTD--LENPNSVQQMKQWLS-NNGLE----TDSLGKKVVAELIKTAP 292 Query: 272 QAIQ-VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 +Q V R + ++S+V K T+ A+ DGR RG F GA+RTGRW+G + QNLP Sbjct: 293 PELQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLP 352 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI--------ISDCVRSCVIASEGKKLVVADLA 382 + L+ + + D D +++ +S +R+ I + V+D + Sbjct: 353 Q-----NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFS 407 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALG 440 IEARV+AW AGE W+ K F G D+Y + ++ F+V + + R GK+ ELALG Sbjct: 408 AIEARVIAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALG 467 Query: 441 YQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G A + M + GL+ + LV Sbjct: 468 YGGSIGALKAMGAIEMGLSEDELPPLV--------------------------------- 494 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 AWRQ + + + W ++ +A + +++ + + L Sbjct: 495 --------DAWRQTNPNIVKFWWDVDRAVMEAVKH------KHTTSCYGLTFSCRSGMLF 540 Query: 560 LMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDIL 610 + LPSGR+L Y +G N+ +Y +T++ R +YG K ENIVQA SRDIL Sbjct: 541 ITLPSGRNLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDIL 600 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 M T +IV+ +HDE+V E + +L M P WA+GL L+A+GY Sbjct: 601 CYAM--KTLRNCEIVMHIHDELVIEADPC--MSLDVLCEQMGRTPPWARGLKLRADGYTC 656 Query: 671 KRYRK 675 Y+K Sbjct: 657 PFYKK 661 >gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] Length = 651 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 221/705 (31%), Positives = 330/705 (46%), Gaps = 93/705 (13%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET +DL K G+ YAED ++L A D+ PV ++D + + Q+L +AL Sbjct: 6 LSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTKENLPDQIL-QAL 64 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSALKAV 112 N + A N+ FER L P + W C++V + GLP +L+ V Sbjct: 65 VNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSLEGV 124 Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168 G LKL QK++EG ++I FC K RN P+H + W F Y K DV V Sbjct: 125 GTVLKLKEQKLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKRDVEVE 184 Query: 169 REIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 I +L P+ E ++ DQ INDRG +DV I + ++K+ +EL+ LT Sbjct: 185 LAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEELKELT 244 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 GL + + L+ + WL E G+ L + + +L K + + +V R +A++S Sbjct: 245 -GLENPNSVLQMI-GWL-REHGVTTNSLDKKAVKELL---KVVDAKTTKVLKLRQQAAKS 298 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 +V K +V + DGR RG QF GA+RTGRW+G + QNLP+ +L + Sbjct: 299 SVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQ--NHLPDLKEARDLF 356 Query: 347 PTSITSDPDPL----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 T D L +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ F Sbjct: 357 KTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMVF 416 Query: 403 ETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAST-TGLNL 459 E G+D+Y + ++ F V + + D R GK+ ELA GY G A + M + GL+ Sbjct: 417 EQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMGLDE 476 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 LV + WRQ + + Sbjct: 477 QELQPLVDS-----------------------------------------WRQANPNIVL 495 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 W ++ +A + AI +K+ + + K K L + LPSGR L Y +G N+ Sbjct: 496 FWWDVDKAVKT------AIKYQKQTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGENQ 549 Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +Y T T ++ R +YG K ENI+QA+SRDILA M + IV VHD Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRIVGHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 EI+ E + N + LM P W + L+A+GYE Y+K Sbjct: 608 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis] gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 651 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 214/703 (30%), Positives = 335/703 (47%), Gaps = 89/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET IDL K G+ +YAED ++LFA D+ PV ++D + +PQ + EAL Sbjct: 6 LSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDILEAL 64 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSALKAV 112 + V A N+ FER L P + W C+++ + GLP +L+ V Sbjct: 65 VDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSLEGV 124 Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168 G LKL +KM EG +LI FC K RN P+H W F +Y + DV V Sbjct: 125 GTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDVEVE 184 Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 I +RL+ P+ + ++ DQ INDRG +D+ +I + K+ +EL++LT Sbjct: 185 LAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEELKALT 244 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + + ++ WL E G+ + L + + +L + + T Q +++ R +A++S Sbjct: 245 R--LENPNSVLQMIGWL-REHGVTTDSLDKKVVKELLKTADETTAQVLKL---RQQAAKS 298 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH 345 +V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ EE ++ Sbjct: 299 SVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEARELFGT 358 Query: 346 LPTSITSD-PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 T D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K FE Sbjct: 359 GDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVFEQ 418 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 G+D+Y + ++ F V + ++ R GK+ ELA GY G A + M + GL Sbjct: 419 GKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLKDKE 478 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV + WRQ + + W Sbjct: 479 LRPLVDS-----------------------------------------WRQANPNIVLFW 497 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR-- 577 ++ +A + I+ + + + + +K L + LPSGR L Y +G N+ Sbjct: 498 WDVDRAVKTAIKQ------HIQTETHGIQFEVNKGMLSITLPSGRKLAYVKPKIGENQFG 551 Query: 578 ----SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 +Y T T ++ R +YG K ENIVQA+SRDILA M + ++IV VHDE+ Sbjct: 552 GESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVHDEV 609 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E + + +LM P W + L+A+GYE Y+K Sbjct: 610 IIECGIDQSLDE--IAYLMGIAPEWMTDIKLRADGYECSFYQK 650 >gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 646 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 213/708 (30%), Positives = 326/708 (46%), Gaps = 96/708 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L ID ET S +L K G+ +Y E D ++LF + D V++ D +P + Sbjct: 1 MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 AL + V A N+ FER L L I W C++V A + GLP +L+ VG Sbjct: 61 TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 LKL QK+ EGK+LI F C RN H + W F +Y D+ Sbjct: 121 VLKLDKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETEMS 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++L P+ + ++LDQ INDRG +D+ L + R++L ++ LT Sbjct: 181 IQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLTE- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSA 287 + + ++++K WL + G+ T+T +++++ K P + V + R + ++S+ Sbjct: 240 -LDNPNSVQQMKQWL-ADNGME----TDTLGKKIVAELLKTAPLDLADVLSLRQQLAKSS 293 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K + A+ +DGR RG QF GA+RTGRW+G + QNLP+ L+ + Sbjct: 294 VRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQ-----NHLEDLAEARA 348 Query: 348 TSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 D D L+++ S +R+ + G +L+V+D + IEARV+AWMAGE+W+ Sbjct: 349 LVRFGDFDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQ 408 Query: 400 KAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456 F G D+Y + ++ F V + + R GK+ ELALGY G A + M + G Sbjct: 409 DVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMG 468 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + LV AWRQ + Sbjct: 469 LEEDELPQLV-----------------------------------------DAWRQANPC 487 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VG 574 + + W ++ +A + A+ ++ + L + LPSGR L Y +G Sbjct: 488 IVKFWWDVDKAAME------AVRYKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIG 541 Query: 575 NNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 N+ +Y T++ R +YG K ENIVQA +RDIL M T IV+ Sbjct: 542 ENKFGGQCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQ--TLQHCSIVMH 599 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDEIV E A + M PSWAKGL L+A+GYE+ Y+K Sbjct: 600 VHDEIVIEADPRMSLKA--VCEQMGRTPSWAKGLLLRADGYETDFYKK 645 >gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 663 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 219/734 (29%), Positives = 330/734 (44%), Gaps = 134/734 (18%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + TL ID ET S IDL KCG+ KY+E D V+LFA+ D V + D + +P + Sbjct: 4 IGTLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEIL 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100 +AL + V A N+ FER L + P W C+++ + Sbjct: 64 QALVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWS 123 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK---------GETHECLYDRNKPNHR 151 GLP +L+ VG L L QK++EGK+LI FCK G T RN P H Sbjct: 124 AYMGLPLSLEGVGAVLGLEEQKLKEGKDLIRYFCKPCAATKVNGGRT------RNLPEHA 177 Query: 152 -EAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + W LF Y K DV V I K+L P+ E ++LDQ INDRG +D+ + Sbjct: 178 PDKWELFKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAI 237 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 +I + + L ++ LT + + + ++K WL G+ + L + +L K Sbjct: 238 RIDAISKATLMATMQDLTD--LENPNSVAQMKGWL-AAKGVDTDSLDKKAVIELL---KT 291 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + V R + ++S+V K + A+ DGR RG QF GA+R+GRW+G + QN Sbjct: 292 VPTDVADVLTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQN 351 Query: 329 LPR-------------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 LP+ S +E L+ ++P ++S+ +R+ I EG K Sbjct: 352 LPQNHMEDLDVARDIVKSGDYEILNMFYDNVPG----------VLSELIRTAFIPREGYK 401 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGK 433 VAD + IEARV+A +A E+W++K F D+Y + + F V + ++ R GK Sbjct: 402 FAVADFSAIEARVIAHLAKERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGK 461 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + ELALGY G A M + Sbjct: 462 IAELALGYGGSVGALTSMGA---------------------------------------- 481 Query: 494 IEDLFIGTACERVK---KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 L +G A E ++ AWR + + + W ++ A ++ I K A K + +Y Sbjct: 482 ---LDMGLAEEELQPLVDAWRAANPNIVQFWWDVDNAVKRAI---KERTATKTHGIRFIY 535 Query: 551 MKKDKNNLILMLPSGRSLVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENI 601 L ++LPSGR L Y +G N+ +Y T ++ R +YG K ENI Sbjct: 536 KSA---MLFIVLPSGRRLAYVKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENI 592 Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL 661 VQA+SRDIL + + IV VHDE++ E A + M P W +GL Sbjct: 593 VQAISRDILCYALRTLSHCF--IVGHVHDEVIIECRQDASLEA--ICEQMGRVPEWIEGL 648 Query: 662 PLKAEGYESKRYRK 675 L+A+GYE++ Y+K Sbjct: 649 LLRADGYETQFYKK 662 >gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1] Length = 658 Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 221/723 (30%), Positives = 329/723 (45%), Gaps = 114/723 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M T+ ID ETRS D+TKCG+ YA+ + L + DD V+L+D + +P+ + Sbjct: 1 MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP-IHR-----------------WICTLVLA 100 AL + V A N FER L + P I R W CT++ Sbjct: 61 TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKP-NHREAWRLFG 158 R+ GL S L + G ALKL QKM EGK LI FC +T + + + P + E W F Sbjct: 121 RTLGLSSTLASAGAALKLEQQKMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWETFK 180 Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y K DV I +RL P+ E +YLDQ INDRG VD+ L + + Sbjct: 181 AYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQAKA 240 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 L E+ LT + + + +L WL E G + L + + +L + K +++ Sbjct: 241 TLSSEMRRLTG--IENPNSVYQLLEWLG-EQGYKSDCLDKAAVKELLKTVKDPVKSVLEL 297 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PS 333 R+ S+S+V K + A SD R RG F GASRTGRW+G + QNLP+ P Sbjct: 298 ---RLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIPD 354 Query: 334 RS----------HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 + ++E++ +P ++ S +R+ + G K ++AD + Sbjct: 355 LTEARNTVKYGYYDEVEMFYGDVPDTL----------SQLIRTAFVPRPGYKFIIADFSA 404 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGY 441 IEARV+AW+AGE+W++ AF G D+Y + ++ F V + V + R GKV ELA GY Sbjct: 405 IEARVIAWLAGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGY 464 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 G A + M LNL+ D+E Sbjct: 465 GGSVGAMKAMGG-DALNLS----------------DSE---------------------- 485 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 +++ WR + + W + A ++ I K I + + Y K L + Sbjct: 486 -LKQIVTDWRDASPNIVKFWWTVDDAVKKAI---KQKITTETHGLQFSYQSK---MLFIT 538 Query: 562 LPSGRSLVYR--DVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAE 612 LPSGR L Y +G N+ +Y+ +++ R +YG K ENIVQAV+RD+L Sbjct: 539 LPSGRKLCYAHPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMF 598 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 M T IV +HDE++ E + + M P+WA+GL L+A+GYE + Sbjct: 599 SMQ--TMRCCFIVGHIHDEMIIEA--DRRMSLDEVCRQMERTPAWAEGLLLRADGYECEF 654 Query: 673 YRK 675 YRK Sbjct: 655 YRK 657 >gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] Length = 651 Score = 273 bits (698), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 220/705 (31%), Positives = 329/705 (46%), Gaps = 93/705 (13%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET +DL K G+ YAED ++L A D+ PV ++D + + Q+L +AL Sbjct: 6 LSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTKENLPDQIL-QAL 64 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSALKAV 112 N + A N+ FER L P + W C++V + GLP +L+ V Sbjct: 65 VNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSLEGV 124 Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168 G LKL QK++EG ++I FC K RN P+H + W F Y K DV V Sbjct: 125 GTVLKLKEQKLKEGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKRDVEVE 184 Query: 169 REIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 I +L P+ E ++ DQ IND G +DV I + ++K+ +EL+ LT Sbjct: 185 LAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEELKELT 244 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 GL + + L+ + WL E G+ L + + +L K + + +V R +A++S Sbjct: 245 -GLENPNSVLQMI-GWL-REHGVTTNSLDKKAVKELL---KVVDAKTTKVLKLRQQAAKS 298 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 +V K +V + DGR RG QF GA+RTGRW+G + QNLP+ +L + Sbjct: 299 SVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQ--NHLPDLKEARDLF 356 Query: 347 PTSITSDPDPL----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 T D L +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ F Sbjct: 357 KTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMVF 416 Query: 403 ETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAST-TGLNL 459 E G+D+Y + ++ F V + + D R GK+ ELA GY G A + M + GL+ Sbjct: 417 EQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMGLDE 476 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 LV + WRQ + + Sbjct: 477 QELQPLVDS-----------------------------------------WRQANPNIVL 495 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 W ++ +A + AI +K+ + + K K L + LPSGR L Y +G N+ Sbjct: 496 FWWDVDKAVKT------AIKYQKQTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGENQ 549 Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +Y T T ++ R +YG K ENI+QA+SRDILA M + IV VHD Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRIVGHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 EI+ E + N + LM P W + L+A+GYE Y+K Sbjct: 608 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 641 Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 214/708 (30%), Positives = 327/708 (46%), Gaps = 101/708 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L +D ETRS +D+ + G+ +Y AED ++LF + D V++ D V +PQ + Sbjct: 1 MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH-----------RWICTLVLARSNGLPS 107 +AL + V A N+ FER L + +H W CT+V + GLP Sbjct: 61 DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 +L V L L QKM EGK LI F HE P E W LF Y + DV V Sbjct: 121 SLAVVARVLGLEEQKMTEGKALIRYFSTPPFHE-------PTG-EKWELFKSYNRRDVEV 172 Query: 168 TREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 I +RL P+ E + LDQ INDRG C+D+ +I + K+ L++L Sbjct: 173 EMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRLKTL 232 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 T GL + + ++K WL E G+ E L + T +L++ L + +++ R + ++ Sbjct: 233 T-GL-ENPNSVAQMKAWL-KEQGVETESLDKKTVAALLTNVSALLKEVLEL---RQQLAK 286 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 S+V K + + +D R RG QF GA+RTGR+SG QNLP+ ++ E + + Sbjct: 287 SSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARSLVR 346 Query: 346 ------LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 L S D ++S +R+ I EG+K +VAD + IEARVL+W+A E+W++ Sbjct: 347 QGNFAALELLYESVSD---VLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRM 403 Query: 400 KAFETGEDLYVTTYARSF--NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456 F D+Y T R F NV R GK ELA GY G A + + +G Sbjct: 404 DVFANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFGALESG 463 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + LV AWR + Sbjct: 464 MKEDELKPLV-----------------------------------------DAWRTANPN 482 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VG 574 + + W + +A + I+ ++I + +Y + + LPSGR L Y +G Sbjct: 483 IVDFWWAVDRAAKDCIKE-RSITG--THGIKFIY---QSGMMFIELPSGRRLAYVKPRIG 536 Query: 575 NNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 N+ +Y+ +++ R +YG KL ENI QA+SRD+L M T DIV Sbjct: 537 ENQFGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQ--TLRSMDIVAH 594 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ E + +++ M P WA+GL L+A+G+E + Y+K Sbjct: 595 VHDELIIECDERVSLSSAC--EQMARTPLWAEGLLLRADGFECQFYQK 640 >gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes] gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 651 Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 220/715 (30%), Positives = 337/715 (47%), Gaps = 113/715 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET IDL K G+ +YAED ++LFA D+ PV ++D + +PQ + EAL Sbjct: 6 LSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDILEAL 64 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSALKAV 112 + V A N+ FER L P + W C+++ + GLP +L+ V Sbjct: 65 VDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSLEGV 124 Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168 G LKL +KM EG +LI FC K RN P+H + W F +Y + DV V Sbjct: 125 GTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRRDVEVE 184 Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 I +RL+ P+ + ++ DQ INDRG +DV +I + K+ +EL++LT Sbjct: 185 LAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEELKALT 244 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 GL + + L+ + WL E G+ + L + + +L + + T Q +++ R +A++S Sbjct: 245 -GLENPNSVLQMI-GWL-REHGVTTDSLDKKAVKGLLKTVDETTAQVLKL---RQQAAKS 298 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 +V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ HL Sbjct: 299 SVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQ------------NHL 346 Query: 347 PT-------SITSDPDPLQIISDC-------VRSCVIASEGKKLVVADLAGIEARVLAWM 392 P T D + ++I D +R+ + S+GKK +V D + IEARVL+ + Sbjct: 347 PDLEEARELFGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHL 406 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQK 450 AGE+W+ K FE G+D+Y + ++ F V + ++ R GK+ ELA GY G A + Sbjct: 407 AGERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKA 466 Query: 451 MAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 M + GL LV + Sbjct: 467 MGALDMGLTEEELQPLVNS----------------------------------------- 485 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 WR + + W ++ A + + K +I + + + L + LPSGR L Sbjct: 486 WRLANPNIVLYWWDVDNAVKTAV---KELIPTSTHGIQF---EVKRGILFITLPSGRKLA 539 Query: 570 YRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 Y +G+N+ +Y T T ++ R +YG K ENIVQA+SRDILA M Sbjct: 540 YIKPRIGDNQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLKN- 598 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + IV VHDE++ E P + + + LM P W + L+A+GYE Y+K Sbjct: 599 -FKIVGHVHDEVIIECPIEQKLDE--VASLMGIAPDWLSDINLRADGYECFFYQK 650 >gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes] gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes] gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 651 Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 218/705 (30%), Positives = 333/705 (47%), Gaps = 93/705 (13%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET IDL K G+ +YAED ++L A D+ PV ++D + +PQ + EAL Sbjct: 6 LSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYD-FNKEKLPQDILEAL 64 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIH---------RWICTLVLARSNGLPSALKAV 112 V A N+ FER L P W C+++ + GLP +L+ V Sbjct: 65 VEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSLEGV 124 Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168 G LKL QKM EG +LI FC K RN P+H W F +Y + DV V Sbjct: 125 GTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDVEVE 184 Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 I +R++ P+ S ++ DQ INDRG +DV +I + K+ EL++LT Sbjct: 185 LAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAELKTLT 244 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 GL + L+ + +WL E G+ + L + + +L + + T Q +++ R +A++S Sbjct: 245 -GLEKPNSVLQMI-SWL-REHGVATDSLDKKAVKELLKTVDETTAQVLKL---RQQAAKS 298 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS----RSHEELDQI 342 +V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ + EL + Sbjct: 299 SVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARELFRT 358 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 T + D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K F Sbjct: 359 GDLESTELLYDTQ--DTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVF 416 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNL 459 E G+D+Y + ++ F V + ++ R GK+ ELA GY G A + M + GL+ Sbjct: 417 EQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLSE 476 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 LV + WRQ + + Sbjct: 477 EELQPLVNS-----------------------------------------WRQANPNIVL 495 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR 577 W ++ A + + K ++ +++ + L + LPSGR L Y +G N+ Sbjct: 496 YWWDVDNAVKTAV---KELLPTSTQNIQF---EVKSGILFITLPSGRKLAYIKPRIGENQ 549 Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +Y T T ++ R +YG K ENIVQA+SRDILA M + IV VHD Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLND--FKIVGHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E++ E P + + + LM P W + L+A+GYE Y+K Sbjct: 608 EVIIECPIEQKLDE--VASLMGIAPYWLSDINLRADGYECFFYQK 650 >gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 646 Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 215/714 (30%), Positives = 321/714 (44%), Gaps = 108/714 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L K G+ +Y E + ++LFA+ D PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 ALE+ V A N+ FER L + W C+++ A + GLP +L+ VG Sbjct: 61 AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN+P H + W F Y DV Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETEMG 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +L P+ ++ E +++DQ INDRG +D+ L + R +L ++ +T Sbjct: 181 IQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKDMTE- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL + G+ + L + +L K V R + ++S+V Sbjct: 240 -LENPNSVQQMKQWLS-DNGIETDSLDKKAVAELL---KDAPDNLADVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + + + SDGR RG QF GA+RTGR+SG QNLP+ HLP Sbjct: 295 RKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQ------------NHLPD 342 Query: 349 -------SITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + D D ++++ S +R+ I E VAD + IEARV+AW A Sbjct: 343 LSEARSLVRSGDFDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFA 402 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKM 451 GE W+ + FE G D+Y + ++ F V + + R GK+ ELALGY G A + M Sbjct: 403 GESWRQQVFEKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAM 462 Query: 452 AS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + GLN LV AW Sbjct: 463 GALDMGLNEEELPALV-----------------------------------------DAW 481 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 RQ + R+ E W + +A + ++ D L + K L + LPSGR L Y Sbjct: 482 RQANPRIVEFWWAVDRAVMEAVK-----YKHTTTDYGLTFSCK-SGMLFITLPSGRKLAY 535 Query: 571 --RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 +G N+ +Y T++ R +YG K ENIVQA +RDIL M T Sbjct: 536 VKPKIGTNKFGGSCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAM--KTLRC 593 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ +HDE+V E +A + M P WAKGL L+A+GY + Y+K Sbjct: 594 CSIVMHIHDELVIEADPKVSLDA--ICEQMGRTPPWAKGLLLRADGYTTPFYKK 645 >gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14] Length = 651 Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 216/719 (30%), Positives = 338/719 (47%), Gaps = 121/719 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET IDL K G+ +YAED ++LFA ++ PV ++D + +PQ + EAL Sbjct: 6 LSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLSKEK-LPQDILEAL 64 Query: 62 ENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR------WICTLVLARSNGLPSALKAV 112 + V A N+ FER L ++ D+ + R W C+++ + GLP +L+ V Sbjct: 65 VDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSLEGV 124 Query: 113 GEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVT 168 G LKL QKM EG +LI FC K RN P+H + W F +Y + DV V Sbjct: 125 GTVLKLKDQKMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRRDVEVE 184 Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 I +RL+ P+ + + DQ INDRG +DV +I + ++ +EL++LT Sbjct: 185 LAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEELKALT 244 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + + ++ WL E G+ + L + + +L K + + +V R +A++S Sbjct: 245 S--LENPNSVLQMIGWL-REHGVTTDSLDKKAVKELL---KTVDDKTSKVLKLRQQAAKS 298 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 +V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ HL Sbjct: 299 SVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQ------------NHL 346 Query: 347 PT-------SITSDPDPLQIISDC-------VRSCVIASEGKKLVVADLAGIEARVLAWM 392 P T D + +++ D +R+ + S+GKK +V D + IEARVL+ + Sbjct: 347 PDLEEARKLFKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHL 406 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQK 450 AGE+W+ K FE G+D+Y + ++ F V + ++ R GK+ ELA GY G A + Sbjct: 407 AGEKWRSKVFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKA 466 Query: 451 MAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 M + GL+ LV + Sbjct: 467 MGALDMGLSEEELQPLVNS----------------------------------------- 485 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL----VYMKKDKNNLILMLPSG 565 WRQ + + LW ++ A + + + +P + + L + LPSG Sbjct: 486 WRQANPNIVLLWWDVDNAVKTAV----------KEQIPTSTHGIQFEVRSGILFITLPSG 535 Query: 566 RSLVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R L Y +G N+ +Y T T ++ R +YG K ENIVQA+SRDILA + Sbjct: 536 RKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQ 595 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + IV VHDE++ E P + + + LM P W + L+A+GYE Y+K Sbjct: 596 LKE--FKIVGHVHDEVIIECPMEQKIDK--IASLMGIAPDWMSDINLRADGYECLFYQK 650 >gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378] Length = 684 Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 215/710 (30%), Positives = 330/710 (46%), Gaps = 100/710 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L K G+ +Y A+D VILF + D V++ D + +P+ + Sbjct: 39 MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 +AL + +T A N+ FER L + W C++V + GL +L+ VG Sbjct: 99 DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158 Query: 115 ALKLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L L QK+ EGK+LI FC G T D + W+ F Y K DV Sbjct: 159 VLGLEKQKLTEGKDLIRYFCLPCTPTKINGGRTRNLSTD-----EIDKWQQFKAYNKRDV 213 Query: 166 TVTREIFKRLEPLSSKEQELW---YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +I +RL E ++W +LDQ INDRG VD+ + D+ KL + Sbjct: 214 EAEIQIQQRLIKFPVPE-DIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVM 272 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + +T + + ++++K+WL E GL +E L + L K+ + +V + R + Sbjct: 273 QQITN--LDNPNSVQQMKSWL-CENGLEMETLGKKAVAEKL---KETDGELNEVLSLRQQ 326 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQ 341 ++S+V K + A+ SD R RG QF GA+RTGR++G + QNLP+ +E Sbjct: 327 LAKSSVKKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARN 386 Query: 342 IITH-----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 I+ + L PD L S +R+ + G K +VAD + IEARVL+W+AGE Sbjct: 387 IVRNGDVETLEMLYEDIPDTL---SQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGET 443 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 W+ K F +G D+Y + ++ F V + V R GK+ ELALGY G A + M Sbjct: 444 WRTKVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG-- 501 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 A+E + + AWR + Sbjct: 502 --------------------------------------ALEMGLEEEELKPLVNAWRMSN 523 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-- 572 +++ W ++ +A +Q ++ K+ ++ + L ++LPSGR L Y Sbjct: 524 PNITQFWWDVDRAAKQCVKENKS------QETHSIEFHCFSGMLFIVLPSGRRLAYVKPR 577 Query: 573 VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 +G N+ +Y T++ R +YG K ENIVQA+SRDIL M + Y IV Sbjct: 578 IGENQFGGESVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSLRH--YRIV 635 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ ET + + + + M+ P WAKGL L A+GYE Y+K Sbjct: 636 AHVHDEVIIET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683 >gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] Length = 662 Score = 270 bits (689), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 216/725 (29%), Positives = 335/725 (46%), Gaps = 114/725 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ++L+KCG+ KYAE D ++LF + D V + D +PQ + Sbjct: 1 MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF-----NLDIPIH----------------RWICTL 97 +AL + V A N+ FER L +LD P H W C++ Sbjct: 61 DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLD-PFHDNHPLSTECARFLNPESWRCSM 119 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EA 153 V A + GLP +L+ VG L L QK+ EGK+LI F C RN P H + Sbjct: 120 VWAATMGLPLSLEGVGAVLGLEKQKLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPDK 179 Query: 154 WRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F +Y DV I RL P+ + +++DQ INDRG +D+ L ++ Sbjct: 180 WEAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEMD 239 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 R++L ++ +T + + ++++K WL + GL T++ ++V++ K P Sbjct: 240 TRSRSELTAAMKDMT--ALDNPNSVQQMKQWLS-DNGLE----TDSLGKKVVAELIKTAP 292 Query: 272 QAIQ-VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 +Q V R + ++S+V K T+ A+ DGR RG F G +RTGRW+G + QNLP Sbjct: 293 PELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLP 352 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII--------SDCVRSCVIASEGKKLVVADLA 382 + L + + + D ++++ S +R+ I +G + V+D + Sbjct: 353 Q-----NHLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFS 407 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALG 440 IEARV+AW AGE W+ K FETG D+Y + ++ F+V + + R GK+ ELALG Sbjct: 408 AIEARVIAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALG 467 Query: 441 YQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G A + M + GL+ + LV Sbjct: 468 YGGSVGALKAMGAIEMGLSEDELPPLV--------------------------------- 494 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 AWRQ + + + W ++ ++ + ++ L + + L Sbjct: 495 --------DAWRQTNPNIVKFWWDVDRSVMEAVK-----YKHTTSSYGLTFSCR-SGMLF 540 Query: 560 LMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDIL 610 + LPSGR+L Y +G N+ +Y +T++ + +YG K ENIVQA SRDIL Sbjct: 541 ITLPSGRNLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDIL 600 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 M T IV+ +HDE+V E + +L M P WAKGL L+A+GY + Sbjct: 601 CYAM--KTLRCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGYVT 656 Query: 671 KRYRK 675 Y+K Sbjct: 657 PFYKK 661 >gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1] Length = 645 Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 197/663 (29%), Positives = 308/663 (46%), Gaps = 80/663 (12%) Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 +P L+EALE+ DV A N+ FER + + + P W CT+ LA G L AV Sbjct: 22 LPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAWRCTMALAYMLGFAGDLLAV 81 Query: 113 GEALKLSSQKME--EGKELIARFCKGE--THECLYD-RNKPNHREAWRLFGEYCKGDVTV 167 G + L K++ EGK LI F K + T + ++ RN+ E W F +Y DV Sbjct: 82 GTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEATDPEDWWHFCKYNIRDVET 141 Query: 168 TREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 I RL P+ E +++ LDQ IND G +D A++ + + + ++ +E+ + Sbjct: 142 ELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYSALALAEARKPQIIEEMADI 201 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL--SSNKKLTPQAIQVFNNRMRA 283 T GL ++ +L WL E G DL T +V+ + + P+AI+V R+ + Sbjct: 202 T-GL-NNPNSPAQLTPWL-KERGYPFSDLRSDTVNKVIREADENGVDPEAIRVLQMRLNS 258 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD--Q 341 +++++ K T+++A DGR R +LQF GASRT RW+G QNLPR + E++ Sbjct: 259 AKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRIQTQNLPRTPKLIEDVTDLS 318 Query: 342 IITHLPTSITSDP------DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 I+ + D +P+ + C+RS I + G K +VADL+ IE+ V+ W+ Sbjct: 319 IVNKMIHQRDLDALTLYVGEPMDALVGCIRSAFIPTPGHKFIVADLSSIESVVIGWLTDC 378 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +W + DLY + A ++ P + TK R+ K L GY+ G + T Sbjct: 379 KWFMNTLAAKHDLYRSFAAHWLHL-PYEETKPHRSKAKPATLGAGYRLGGGHMDENGKKT 437 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 GL W AEN M + E +++ A+R Sbjct: 438 GL-----------------WGYAENMGVHMTQKEAEESVQ-------------AFRDLCP 467 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----- 570 + W +L A + I +A++ + ++ K L + LPSGR + Y Sbjct: 468 EIVRAWYDLENAVFKVIRTRQAVVWG------CLIIEYTKPFLTIRLPSGRKMYYFRPRL 521 Query: 571 --------RDVGNNRSYLNTTTR----------QLTREYTYGGKLTENIVQAVSRDILAE 612 + Y T + + + Y++GGKL ENIVQA++RD+LAE Sbjct: 522 VERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSHGGKLVENIVQALARDVLAE 581 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 G+ A + G+ IV+ +HDEIV E P+ L M + WA+GLPL A G+E Sbjct: 582 GLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAAELPWAEGLPLGAAGWEGYF 641 Query: 673 YRK 675 YRK Sbjct: 642 YRK 644 >gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] Length = 646 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 217/713 (30%), Positives = 329/713 (46%), Gaps = 106/713 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L+K G+ +Y E D +ILF + D V++ D +P+ + Sbjct: 1 MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 +ALE+ VT A N+ FER L + W C++V + GLP +L+ VG Sbjct: 61 DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGKELI FC + RN P+H E W F Y DV + Sbjct: 121 VLGLEKQKLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAEMQ 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I RL+ P+ + ++LDQ INDRG VD+ +I +V R L +++ LT Sbjct: 181 IQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQVLTS- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSA 287 +++ + ++K WL + G+ TET ++ +++ P + ++ R + ++S+ Sbjct: 240 -LTNPNSVVQMKGWLS-DNGIE----TETLGKKAVAALIDEVPDEMSEILALRQKLAKSS 293 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SR 334 V K + ++ DGR+RG QF GA+RTGR++G + QNLP+ S Sbjct: 294 VRKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSG 353 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 ++ LD + +P ++ S +R+ I + + +VAD + IEARV+AW AG Sbjct: 354 DYDSLDLLYDDIPDTL----------SQLIRTAFIPTVNESFIVADFSAIEARVIAWFAG 403 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMA 452 E W+ F G D+Y + ++ F V + V R GK+ ELALGY G A + M Sbjct: 404 ESWRADVFAKGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG 463 Query: 453 S-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + GL +E PE + AWR Sbjct: 464 ALEMGL---------------------------AEEELPE--------------LVSAWR 482 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + + W ++ A + KAI ++ V+ L + LPSGR L Y Sbjct: 483 CSNPNIVRFWWDVDSAVK------KAIKSKTSTATHGVHFSCRSGMLFITLPSGRVLSYV 536 Query: 572 D--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +G N+ +Y +T++ R +YG K ENIVQA SRDIL M T Sbjct: 537 KPCMGENKFGGESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAM--KTLRCC 594 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDEI+ E +A + M P WA+GL L+A+GYE + Y+K Sbjct: 595 SIVAHVHDEIIIEADPRMSLDA--ICEQMGRTPPWAEGLLLRADGYECQFYKK 645 >gi|332522757|ref|ZP_08399009.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] gi|332314021|gb|EGJ27006.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] Length = 653 Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 219/705 (31%), Positives = 334/705 (47%), Gaps = 91/705 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDC-VHDPVMPQVLKEA 60 L ID ET IDL K G+ +YAED ++LFA D+ PV ++D + +PQ + E Sbjct: 6 LSIDIETYCEIDLRKSGVYRYAEDESFELLLFAVSVDNGPVTVYDLDLTKEKLPQDILET 65 Query: 61 LENTDVTIVAHNSYFERTVLKAC---FNLDI-------PIHRWICTLVLARSNGLPSALK 110 L + V A N+ FER L ++ D+ P+ W C+++ + GLP +L+ Sbjct: 66 LVDNSVIKWAFNASFERICLSNWLKKYHPDLLLDGFLSPVS-WRCSMIWSAYLGLPLSLE 124 Query: 111 AVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVT 166 VG LKL QKM EG +LI FC K RN P+H W F +Y + DV Sbjct: 125 GVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHASNKWSTFIDYNRRDVE 184 Query: 167 VTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V I +R++ P+ S ++ DQ IND G +DV +I + K+ EL++ Sbjct: 185 VELAIKERVKNFPVPSFVWNEYHQDQIINDHGIGIDVDFVKAALKIDGESKAKIQAELKA 244 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 LT GL + + L+ + +WL E G+ + L + + +L + + T Q +++ R +A+ Sbjct: 245 LT-GLENPNSVLQMI-SWL-REHGVATDSLDKNAVKELLKTVDETTAQVLKL---RQQAA 298 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS--HEELDQI 342 +S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ E D Sbjct: 299 KSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARDLF 358 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 T S D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K F Sbjct: 359 RTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVF 418 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNL 459 E G+D+Y + ++ F V + ++ R GK+ ELA GY G A + M + GL+ Sbjct: 419 EQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLSK 478 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 LV + WR + + Sbjct: 479 EELQPLVNS-----------------------------------------WRLANPNIVL 497 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR 577 W ++ A + + K +I + + L + LPSGR L Y +G+N+ Sbjct: 498 YWWDVDNAVKTAV---KELIPTSTHGIQF---EVKSGILFITLPSGRKLAYIKPRIGDNQ 551 Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +Y + T ++ R +YG K ENIVQA+SRDILA M + IV VHD Sbjct: 552 FGGESVTYEGSGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLKD--FRIVGHVHD 609 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 EI+ E + N + LM P W + L+A+GYE Y+K Sbjct: 610 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECFFYQK 652 >gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens FD-1] Length = 654 Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 215/725 (29%), Positives = 333/725 (45%), Gaps = 122/725 (16%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+++CG+ +YAE ++L ++ D PV D +P + Sbjct: 1 MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP--------------IHRWICTLVLARSNG 104 AL + V A N FER L + P W C ++ +R G Sbjct: 61 SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFC----KGETHECLYDRNKPNHREAWRLFGEY 160 + S+L +G+ L+L +K++EGK+LI FC + + YD K + + W+ F EY Sbjct: 121 MMSSLDDMGKLLRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYD--KSDAPKKWKEFIEY 178 Query: 161 CKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + DV V +I + L P+ E +Y+DQ INDRG VD A ++ + +L Sbjct: 179 NRRDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKEL 238 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 +L+ LT + + ++K WL + G+ + L + + +L+S + + ++ Sbjct: 239 FPKLKELTR--LDNPNSPAQMKDWL-MRQGIEADSLDKKSMPLLLASAPDDVKEVLMLYQ 295 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + S+S+V K +T++ A DGR RG F GA+RTGR++G + QNLP+ Sbjct: 296 ---QLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQ-----NH 347 Query: 339 LDQIITHLPTSITSDPDPLQ--------IISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 LD + + D D ++ ++S +R+ I EGKK VVAD + IEARV++ Sbjct: 348 LDNLAETKWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVIS 407 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAF 448 W+AGE W+++AF GED+Y A+ F V + V R GK+ ELA GY G A Sbjct: 408 WLAGETWRMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAI 467 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + M T LNL ++ +ED Sbjct: 468 KAMGGTE-LNLT--------------------------DDELYSLVED------------ 488 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 WR+ + +LW+++ + I + ++ + + + L + LPSGR L Sbjct: 489 -WRKTSPNIVKLWSDVQSVAVKVITDQSSMTFGRLK------FSYEIGILFIELPSGRRL 541 Query: 569 V-----------------YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 Y VG+N+ +L R TYG KL ENI Q ++RD+L Sbjct: 542 AYVRPKVEKDDNGKTIITYEGVGDNKKWL--------RLETYGAKLVENITQGIARDLLL 593 Query: 612 EGMMNATKAGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 M A DIV VHDE++ E PDT + HLM P WA+GL L+A+GYE Sbjct: 594 HSM--AAMKDMDIVGHVHDEVIVECDPDT---TVVQVCHLMEQTPDWAEGLLLRADGYEC 648 Query: 671 KRYRK 675 + Y K Sbjct: 649 EFYMK 653 >gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] Length = 646 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 211/712 (29%), Positives = 326/712 (45%), Gaps = 104/712 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L K G+ +Y E + ++LFA+ D V++ D +P+ + Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALEN V A N+ FER L + W C+++ A + GLP +L+ VG Sbjct: 61 LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN+P H + W +F +Y DV Sbjct: 121 VLGLEKQKLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +RL P+ ++ + +++DQ INDRG +D+ L ++ RT+L + ++ +T Sbjct: 181 IQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKEITE- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL + GL + L + +L K +P+ QV R + ++S+V Sbjct: 240 -LENPNSVQQMKAWLS-DNGLETDTLGKKAVTELL---KSASPKLSQVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP-------------SRS 335 K + + + +DGR RG QF GA+RTGR+SG QNLP+ S + Sbjct: 295 RKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSGN 354 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 E + + +P ++ S +R+ I EG + +VAD + IEARV+AW AGE Sbjct: 355 FEAVKLLYEDVPDTL----------SQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGE 404 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +W+ + F G D+Y + ++ F V + + R GK+ ELALGY G A + M + Sbjct: 405 KWRQEVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA 464 Query: 454 -TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 GL LV AWRQ Sbjct: 465 LDMGLTEEELPPLV-----------------------------------------DAWRQ 483 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-- 570 + + + W + A + ++ L + + L + LPSGR L Y Sbjct: 484 SNPNIVKFWWNVDHAVMEAVK-----FKHTTSSYGLTFSCRS-GMLFITLPSGRKLAYVK 537 Query: 571 RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 +G N+ +Y T++ R +YG K ENIVQA +RDIL M T Sbjct: 538 PKLGTNKFGGQCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAM--KTLRCCS 595 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ +HDE+V E A + M P WAKGL L+A+GY + Y+K Sbjct: 596 IVMHIHDEVVIEADPRMSLEA--VCEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] Length = 656 Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 212/714 (29%), Positives = 320/714 (44%), Gaps = 98/714 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +D+ K G+ KY E ++LFA+ +D V + D +P + Sbjct: 1 MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L N +V A+N+ FE T L P +W CT++ G P+ L +G AL + Sbjct: 61 SDLNNPEVIKHAYNASFEITGLNRYGYATSP-EQWRCTMLHGLYLGYPAGLAFLGAALGI 119 Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 +K+ GK LI FC K RN P H + W LF EY DV E + Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ Q+ W +D +N RG +D+ L I D +T+L ++ +T Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITGLTN 239 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +SR +L TW+ + L LE LT+ T L + Q +V + R ++S++ K Sbjct: 240 PNSR--NQLLTWINDNSDLKLEKLTKETVAESLQIAED---QVAEVLHIRRALAKSSISK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSHE 337 ++ A+ +DGR+RG LQF GA+RTGRW+G + QNLP + + Sbjct: 295 YESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHDVPVAMDTAIRLVKNGNAR 354 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + + H+ TS +S +R+ +A EG L V+D + IEARVL+W+A E+W Sbjct: 355 GVKLMYGHISTS----------LSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKW 404 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + F G D+Y + + F V + + R GKV ELALGYQGG A M + Sbjct: 405 RQDVFAKGGDIYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMGA-- 462 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +++ E + D+ WR + Sbjct: 463 -----------------------------LKQGLTEDELPDIV---------HRWRGANP 484 Query: 516 RVSELWNELHQAFEQTIENGKAIIARK----RRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 R+ W ++ A + + + + R+ L+Y + L + LPSGR L Y Sbjct: 485 RICGFWYDVDGAALSVMSDARPVGLPHGILISRECNLLY---GYDYLTIRLPSGRKLYYP 541 Query: 572 DVGNNRS--------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 N + Y + + TYGGKL ENI QA++RD LA + KAGY Sbjct: 542 QPYINENQFGKPALHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYK 601 Query: 624 IVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ +HDE+V E P E + +M + WA GL L A+G+ S Y K Sbjct: 602 PLMHIHDEVVLEVPKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655 >gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 643 Score = 266 bits (680), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 221/710 (31%), Positives = 318/710 (44%), Gaps = 103/710 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S ID+ K G +YA E ++LFA+ FD V++ D + +P + Sbjct: 1 MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL++ +V A+N+ FE L C + P+ +W CT+V A LP+ L GEAL + Sbjct: 61 TALQDMEVIKHAYNAAFEWYCLN-CAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119 Query: 119 SSQKMEE--GKELIARFCKGETHECLYDRNKPNHREA--WRLFGEYCKGDVTVTREIFKR 174 + K + GK+LI FC KP +A W+ F EY + DV EI R Sbjct: 120 AEDKKKSAVGKQLIRYFCV-----------KPYKPDAVKWKAFKEYNRQDVVSEMEIENR 168 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E E W D +N G VD L + +I + +L E LT + + Sbjct: 169 LSGFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLTQ--LEN 226 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L W+ + G LE+ + T + L + L + +V R + +++V K Sbjct: 227 PNSPTQLLNWVNAQ-GYPLENTQKATIESALKEDLPLKVR--RVLEIRQQLGKTSVKKYE 283 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR----PSRSHEEL--DQIITHL 346 + + R+RG QF GAS+TGR+SG + QNLPR P E Q L Sbjct: 284 AMTNTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYLEPLAETRECVKRQDYETL 343 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD L S +R+ I S G + VVAD + IEARV+AW+A E W + F T Sbjct: 344 KLLFDSIPDTL---SQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHG 400 Query: 407 DLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLN 460 +Y T ++ F+V ++ K R GKV LALGYQGG A M + GL+ Sbjct: 401 KIYEATASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMGALKMGLS-- 458 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +E PE + WR + R+ L Sbjct: 459 -------------------------EEELPE--------------IVTRWRAANQRIVAL 479 Query: 521 WNELHQAFEQTIENGKA-----IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----- 570 W+ + +T+ +G+A +I R +D +K L + LPS R L Y Sbjct: 480 WSAVGSYALRTVRDGRARQVNGLIFRMEQD-----LKHGLRFLTIELPSKRKLFYCKPYI 534 Query: 571 --RDVGNNRSYL---NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 G Y N TT++ T+GGKL ENIVQ ++RD L E + T GY IV Sbjct: 535 GLNQFGGESLYFYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIV 594 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ + + L +M WAKGL LK G+ + Y+K Sbjct: 595 FHVHDEVIVDA--GMDLTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642 >gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 654 Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 215/708 (30%), Positives = 319/708 (45%), Gaps = 88/708 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET SP D++ G+ KY+E + ++LF++ + V + D +P + Sbjct: 1 MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L+ +V A+N+ FE T L + +W CT++ G P L +G+AL L Sbjct: 60 LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118 Query: 119 SSQKMEE--GKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 + KM++ G LI F CK RN P H + W + Y K DV E + Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ + ++ W +D +N G +D L I + + L +E LT GL Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELT-GL- 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 S+ +L WL T L LE LT+ + ++ L + + + R + ++S+V K Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVAAAMTDADDLAKKVLTI---RKKLAKSSVSK 293 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A DGRLRGTLQF GA+RTGRW+G + QNLPR ++ + + + + Sbjct: 294 YEMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRV 353 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 D +S +R+ +IA EG L VAD + IEARV+AW++GE W+ K F G D Sbjct: 354 GLGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGD 413 Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + + F V + V R GKV ELALGYQGG A + M + GL + Sbjct: 414 IYCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMGALDMGLTEEELPN 473 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 +V WRQ + + W + Sbjct: 474 IVGL-----------------------------------------WRQASPNIVKFWYTV 492 Query: 525 HQAFEQTIENGKAIIARK----RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NN- 576 +A T+ G + R +V Y + + + LPSGR L Y D NN Sbjct: 493 EKAAVYTVTTGNPMTLDHGITFRLEVDPFYGYR---YMTIELPSGRKLFYPDPHIKLNNF 549 Query: 577 -------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ LN E TYGGKL ENI QAV+RD LA +M + G ++ +H Sbjct: 550 DKEAVHFKTQLNNA---WVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIH 606 Query: 630 DEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE V E P + DE+ + P WA+GL L A G+ + Y K Sbjct: 607 DEAVIEVPKDEADEYLDIVEKTFALPIP-WAEGLALTAAGFTNDYYMK 653 >gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont phage 1] Length = 415 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 156/418 (37%), Positives = 234/418 (55%), Gaps = 20/418 (4%) Query: 164 DVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D+ TREI++ L ++ E LW LDQ IN RG C+DV LA + V+ E+ +L Sbjct: 3 DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + LT V ++ + L + G+ L D+ +T QR ++ + + P ++ + R+ Sbjct: 63 TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRIN-DPDIPPALRELLSIRL 121 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ R++ K L++++++DGRLRGT QF GASRTGRW+G +F P NLPRP+ +D Sbjct: 122 QSCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDN 181 Query: 342 IITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 I L + D D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK Sbjct: 182 GIEALKAGCAELICD-DIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWK 240 Query: 399 LKAFE-----TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + AF G+DLY YAR+FN+ P VTK QR IGKVMEL LGY GG AF A Sbjct: 241 VNAFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFAL 300 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L+L A+ N +A ++ + E + + T C+ +K+ WR Sbjct: 301 AYSLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNA 359 Query: 514 HSRVSELWNELHQAFEQTIEN-GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 H++ W ++ A +Q I++ G A RK + +++DK+ L + LPSGRSL Y Sbjct: 360 HTQTVSFWYDIEDAVKQAIQSPGVAFKCRK------LSVRRDKSWLRICLPSGRSLCY 411 >gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] Length = 538 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 205/594 (34%), Positives = 274/594 (46%), Gaps = 84/594 (14%) Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD---RNKPNHRE-AWRLFGEYCKG 163 +L AVG AL L QK GK LI +FC T L RN P+ +W F +Y + Sbjct: 2 SLDAVGAALDLDVQKDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYNQR 61 Query: 164 DVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 DV V I RL P+ E + + LDQ IND G +D LA + D R Sbjct: 62 DVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATLAR 121 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 LT GL + + ++ LK WL G + L + + L S T + +V R Sbjct: 122 ARELT-GLENPNSPIQ-LKEWLTTH-GCEMSSLAKADVEAALESA---TGKVKEVLELRG 175 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++S+V K + +DGR RG +QF GA RTGR++G + QNLPR +LDQ Sbjct: 176 DLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPR--NYLPDLDQ 233 Query: 342 IIT--------HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 T L S PD L S +R+ I S G + +VAD + IEARV+AW+A Sbjct: 234 ARTLTRQRNLDALELLYDSVPDTL---SQLIRTAFIPSAGCRFIVADYSAIEARVIAWLA 290 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQK 450 GE L AF G+DLY T +R F V P + + + R GK+ LA GY G A + Sbjct: 291 GETSTLAAFRDGKDLYCETASRMFGV-PVEKHGINAELRQKGKIATLACGYNGSVGALKA 349 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 M + L + H +K + AW Sbjct: 350 MGA---LRMGLAEHELKP-------------------------------------IVDAW 369 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + + LW ++ QA I +A+ R R + L + LPSGR L Y Sbjct: 370 RAANPNIVRLWADVEQAALDAITTRQAVRLRNLR------FTAESGILFITLPSGRRLAY 423 Query: 571 --RDVGNNR------SYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 +G NR +Y TT R+ R TYGGKL ENIVQAV+RD+L M +AG Sbjct: 424 VKPQLGENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAG 483 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + IV+ VHDEIV + P+ F + LMT+ P WA GLPL A+GYE YRK Sbjct: 484 HKIVMHVHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537 >gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 662 Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 218/723 (30%), Positives = 325/723 (44%), Gaps = 110/723 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M T+ ID ET S ++L KCG+ KYAE ++LF + D V++ D +P + Sbjct: 1 MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKAC----------FNLDIPIHR----------WICTLV 98 +AL + VT A N+ FER L F+ P+ R W C+++ Sbjct: 61 DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAW 154 + GLP +L+ G LKL SQKM+EGK+LI FC K RN P H + W Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQKMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPDKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 LF Y K DV V I +RL+ P+ + ++LDQ INDRG +D LA I Sbjct: 181 TLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVIDA 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R L L+ T GL + + ++ + WL + G+ + L + Q +L + ++ Sbjct: 241 RSRDSLMAVLKGKT-GLENPNSVIQMI-GWL-EQHGMKTDSLGKKQVQELLKTAEEPLRS 297 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR- 331 + + R + ++S+V K + D R RG QF GA+RTGR++G QNLP+ Sbjct: 298 VLLL---RQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354 Query: 332 --PSRSH-EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 P + EL + + + D P ++S +R+ + +G K VV+D + IEARV Sbjct: 355 HLPDLAEARELVRQGNYEALELLYDSIP-DVLSQLIRTAFVPRKGMKFVVSDFSAIEARV 413 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAK 446 L+W+AGE W+L F D+Y + + F V + V R GK+ ELALGY G Sbjct: 414 LSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTG 473 Query: 447 AFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 A + M + GL N LV++ Sbjct: 474 ALKAMGALDMGLTENELYPLVQS------------------------------------- 496 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL----VYMKKDKNNLILM 561 WR + + + W ++ + I + +P+ + L + Sbjct: 497 ----WRSANPHIVDFWWQVDATVKTAI----------KEQIPMRAGCIRFLCQSGMLFIQ 542 Query: 562 LPSGRSLVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAE 612 LPSGR L Y +G NR +Y T++ R +YG K ENIVQ +SRDIL Sbjct: 543 LPSGRRLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCY 602 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672 M IV VHDE++ E +A + M P WA+GL L+A+GYE + Sbjct: 603 AMQTLRCCA--IVGHVHDELIIECSRDASVDA--ICEQMGRTPPWAEGLLLRADGYECEF 658 Query: 673 YRK 675 Y+K Sbjct: 659 YQK 661 >gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23] gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23] Length = 545 Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 185/599 (30%), Positives = 282/599 (47%), Gaps = 89/599 (14%) Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGE 159 GLP++L + +AL+L+ +K EGK LI FC K RN P H E W F E Sbjct: 8 GLPASLDMMSKALRLAQEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIE 67 Query: 160 YCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 YC+ DV V R I K++ P EQ W LDQ I D+G +DV L + + Sbjct: 68 YCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQAS 127 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277 L ++ + LT GL + +++LK WL + G + L + + +L+ ++ L ++ Sbjct: 128 LSKKAKGLT-GL-ENPNSVQQLKDWL-ADMGYPVSSLNKDSVSELLA-DEDLDEDVREML 183 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR------ 331 R S++++ K + A DGR+RG LQF GA+RTGRW+G + QNLPR Sbjct: 184 LLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDI 243 Query: 332 -------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 + +E + + +++P ++S +R+ IA +G + D + I Sbjct: 244 AEVRKDLKAGDYEAFEMMYSNVP----------DVLSQLIRTAFIAEDGYTFDITDFSAI 293 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 EARV+AW+AGEQW+L F + +Y + ++ F++ +V K+ R GKV ELALGY GG Sbjct: 294 EARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGG 353 Query: 445 AKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A M + GL N +V Sbjct: 354 VNALIAMGALEMGLKENELQGIV------------------------------------- 376 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 AWR+ ++ LW + + + I K ++K + + Y + L + LP Sbjct: 377 ----DAWRKASPAITSLWRGVEKHAKLAISTRK---SQKYKGLTFYY---EAGILFIKLP 426 Query: 564 SGRSLVY-------RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 SGR+L Y G Y T + ++YTYGGKL ENIVQA++RD LA + Sbjct: 427 SGRNLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRR 486 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 G D V+ VHDE + E ++ E + L ++ SWA GLPL+ +G+ S Y K Sbjct: 487 IEDTGIDTVMHVHDEAITEVQES-ESSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544 >gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] Length = 661 Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 214/728 (29%), Positives = 326/728 (44%), Gaps = 122/728 (16%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S ID++KCG KYAE + ++LF D+ PV ++D +P + Sbjct: 2 MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH------------------RWICTLVLA 100 AL + ++ A N+ FER L P + W CT++ + Sbjct: 62 AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRL 156 GLP +L+ VG LKL QKM+EGK+LI FC K RN P H + W Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQKMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKWET 181 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F Y + DV V I +RL P+ +++DQ IND G +D+ + N I E Sbjct: 182 FKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVE--NAIAFDE 239 Query: 215 RTK--LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R+K L ++++T + + + ++K WL + G+ E L + ++ + Sbjct: 240 RSKSALITAMKNITN--LDNPNSVVQMKQWLS-DNGVETESLGKKEVAGLIKETDGDISK 296 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 A+++ R++ ++S+V K + A+ DGR G QF GA+R+GRW+G + QNLP+ Sbjct: 297 ALKL---RLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQN 353 Query: 333 SRS-------------HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 S ++ LD + +P ++ S +R+ IA G K +V+ Sbjct: 354 HMSDLTEARELVRTGDYDTLDMLYDDIPDTL----------SQLIRTAFIARPGYKFIVS 403 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMEL 437 D + IEARVLA +AGE W+ K F G+D+Y + ++ F V + + R GK+ EL Sbjct: 404 DYSAIEARVLAHLAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAEL 463 Query: 438 ALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 ALGY G A + M + GL LV + Sbjct: 464 ALGYGGSVGALKSMGALEMGLTEEELQPLVDS---------------------------- 495 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 WR + ++ W + A + I K I + + Y Sbjct: 496 -------------WRSSNPMITAFWWNVDNAIKTAI---KMHIPTEVNGIHFCY---KSG 536 Query: 557 NLILMLPSGRSLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSR 607 L++ PSGR L Y +G NR +Y +T++ R +YG K ENIVQAVSR Sbjct: 537 MLLIKRPSGRVLSYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSR 596 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 DIL M T IV VHDE++ E + N + M + W G+ L+A+G Sbjct: 597 DILCNAM--KTLRHCFIVGHVHDELIIECSSGVDLNE--ICKQMGRSLDWMPGILLRADG 652 Query: 668 YESKRYRK 675 YE+ Y+K Sbjct: 653 YETNFYKK 660 >gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] Length = 663 Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 211/720 (29%), Positives = 335/720 (46%), Gaps = 106/720 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + T+ ID ET S +DL KCG+ KY ++ ++LF + D V + D +P + Sbjct: 4 IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63 Query: 59 EALENTDVTIVAHNSYFERTVL---------KACFNLDIP---------IHRWICTLVLA 100 AL + ++T A N+ FER L K + IP W C++V + Sbjct: 64 MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHRE-AWRL 156 GLP L G L L QK+ EGKELI FC K RN P H W + Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQKLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKWEM 183 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F +Y K DV V I +L P+ + E ++LDQ INDRG +D+ + N I E Sbjct: 184 FKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDV--VTNAIAFDE 241 Query: 215 RTK--LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 ++K L +++ +T GL + ++++K WL GL ++ L + VL++ P+ Sbjct: 242 KSKAVLADKMQEMT-GL-ENPNSVQQMKQWLSC-NGLEMDSLGKKEVAAVLNT----APE 294 Query: 273 AIQ-VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ V R + ++S+V K + A+ SDGR RG F GA+R+GRW+G + QNLP+ Sbjct: 295 PLKTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQ 354 Query: 332 PSRSH-EELDQII---THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 S EE ++ + ++ D P +S +R+ + +G + +V+D + IEAR Sbjct: 355 NHMSDLEEARSLVKQGNYEAMNMLYDDVP-DTLSQLIRTAFVPRKGMEFIVSDFSAIEAR 413 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGA 445 VL+ +AGE+W+ F +G D+Y + ++ F V + V R GK+ ELALGY G Sbjct: 414 VLSHLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSV 473 Query: 446 KAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A + M + GL + LV Sbjct: 474 GALKSMGALDMGLEEDELKPLVDM------------------------------------ 497 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 WR+ + + +LW ++ +A + KA+ R+ + + L + LPS Sbjct: 498 -----WREANPNIVKLWWDVDRAVK------KAVKQREPSSIGSITFSYKSGMLFIGLPS 546 Query: 565 GRSLVY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 GR L Y +G N+ + T++ R +YG K ENIVQA+SRDIL + Sbjct: 547 GRCLSYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIR 606 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + I VHDE++ E + + ++ M P W +G+ L+A+GYE++ Y+K Sbjct: 607 TLSHCF--ICGHVHDELIIEC--SKSVSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662 >gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul] gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul] Length = 693 Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 209/729 (28%), Positives = 333/729 (45%), Gaps = 102/729 (13%) Query: 6 IDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 +D+E+RS DL CG+ Y+ E +++ ++ F+ V+ W+ + D P ++EALE+ Sbjct: 7 LDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWE-IRDGKFPAEVREALED 65 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +V A N+ FER + + ++ P W CT+ A L+ VG L L K+ Sbjct: 66 PNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQDKV 125 Query: 124 E--EGKELIARFCKGE------THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + GK+LI F K + H+ L + P W F Y + DV I + L Sbjct: 126 KLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFE---WDDFLIYNQQDVIAEAAIDEWL 182 Query: 176 EPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P + +E EL+ LDQ INDRG VD+ ++ + D + +L +++ ++T GL + Sbjct: 183 APYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAIT-GL-ENP 240 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK---LTPQAIQVFNNRMRASRSAVLK 290 ++LK W+ G +DL + T ++VL+ +K LT + +V RM+++R++V K Sbjct: 241 NSPQQLKPWV-KARGYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVGK 299 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE---ELDQIITHLP 347 V + RLR LQF GA RT RW+G NL R ++ E + D + + Sbjct: 300 YKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTVT 359 Query: 348 TSITSD---------PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +I + +P+ ++ CVRS + A EG + V DL+ IE V+AW+A Q Sbjct: 360 NAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPL 419 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L F G Y R + V +VT R + K L GY+ G TGL Sbjct: 420 LNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL- 478 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 W AEN M ++ K +R+ + V Sbjct: 479 ----------------WGYAENMGIDMSRQEAHDSV-------------KMYREAYPEVP 509 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571 +LW +L A +TI+ KA+ + +V L+ +LPSGR + Y Sbjct: 510 QLWKDLEAAIIRTIKT-KAVTRVRYVSFEIV-----GEFLVAILPSGRRMYYHRPRIEKK 563 Query: 572 ---------------DVGNNRSY---------LNTTTRQLTREYTYGGKLTENIVQAVSR 607 + G+ ++Y N ++ R+ ++GGK+TEN+VQA++R Sbjct: 564 KFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIAR 623 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 +IL G+ NA K G +IVL VHDEIV D +L MT+ W + +P+ A Sbjct: 624 EILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGAA 683 Query: 667 GYESKRYRK 675 G+ + YRK Sbjct: 684 GWSAAFYRK 692 >gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 147/374 (39%), Positives = 211/374 (56%), Gaps = 20/374 (5%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L++++++D Sbjct: 63 HIASAFGITLPDMQASTLQRRIN-DPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358 GRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L + D D +Q Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A N P Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPG 300 Query: 474 EWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +A RW Q E + + E +F+ C+ +K+ WR H + W ++ A + Sbjct: 301 VKREA---MRWYQKSVETDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAVK 355 Query: 530 QTIEN-GKAIIARK 542 Q I++ G A RK Sbjct: 356 QAIQSPGIAFKCRK 369 >gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 212/371 (57%), Gaps = 14/371 (3%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L++++++D Sbjct: 63 HIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358 GRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L + D D +Q Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + P Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPG 300 Query: 474 EWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 +A ++ + E + + E +F+ C+ +K+ WR H + W ++ A +Q I Sbjct: 301 VKREATSWYQKSVEKDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAVKQAI 358 Query: 533 EN-GKAIIARK 542 ++ G A RK Sbjct: 359 QSPGIAFKCRK 369 >gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2] gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2] gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 212/371 (57%), Gaps = 14/371 (3%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L++++++D Sbjct: 63 HIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358 GRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L + D D +Q Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + P Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPG 300 Query: 474 EWEDAENFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 +A ++ + E + + E +F+ C+ +K+ WR H + W ++ A +Q I Sbjct: 301 VKREATSWYQKSVETDKTYGLSEKIFVN--CDSLKRMWRNAHPQTVSFWYDIEDAVKQAI 358 Query: 533 EN-GKAIIARK 542 ++ G A RK Sbjct: 359 QSPGIAFKCRK 369 >gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2] gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2] gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/374 (39%), Positives = 211/374 (56%), Gaps = 20/374 (5%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L++++++D Sbjct: 63 HIASAFGITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358 GRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L + D D +Q Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N P Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPG 300 Query: 474 EWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +A RW Q E + + E +F+ C+ +K+ WR H + W ++ A + Sbjct: 301 VKREA---MRWYQKSVETDKTYGLSEKIFV--TCDALKRMWRNAHPQTVSFWYDIEDAVK 355 Query: 530 QTIEN-GKAIIARK 542 Q I++ G A RK Sbjct: 356 QAIQSPGIAFKCRK 369 >gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 328 Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 143/335 (42%), Positives = 196/335 (58%), Gaps = 28/335 (8%) Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVT 411 +Q+ S +R C++A GKKLVV+DL+ IE R+LAW+AGEQWKL AF TG DLY Sbjct: 5 MQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPDLYKL 64 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 YAR+FN++ VTK QR IGKVMEL LG+ GG AF A GL+L A N Sbjct: 65 AYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAALPNIP 124 Query: 472 PEEWEDAENFCRWMQENHPEHAI----EDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + +A+ W E+ A E +FI AC+ +K+ WR+ H + W +L Sbjct: 125 RDVQREAKG---WYDESVKRKATYGLSERVFI--ACDSLKRLWRRAHPETCDFWYQL--- 176 Query: 528 FEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVYRDV---GNNRSYL-- 580 E+T+ + IA + + Y+K +D L + LPSGR+L Y N +Y+ Sbjct: 177 -ERTV---RTAIATPAKTLYCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGI 232 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 N+ +R+ R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++CE PDTD Sbjct: 233 NSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTD 292 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ + L L+++NP WA +PL A G+E+ YRK Sbjct: 293 DYTDAALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327 >gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/374 (38%), Positives = 210/374 (56%), Gaps = 20/374 (5%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L++++++D Sbjct: 63 HIASAFGITLPDMQASTLQRRIN-DPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQ 358 GRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L + D D +Q Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLG 300 Query: 474 EWEDAENFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +A RW Q E + + E +F+ C+ +K+ WR H + W ++ A + Sbjct: 301 VKREA---MRWYQKSVETDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAVK 355 Query: 530 QTIEN-GKAIIARK 542 Q I++ G A RK Sbjct: 356 QAIQSPGIAFKCRK 369 >gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 560 Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 195/620 (31%), Positives = 295/620 (47%), Gaps = 110/620 (17%) Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---------KGETHECLY 143 W CT++ + + GLP +L++VG L L QK+ EGK LI FC G T Sbjct: 13 WHCTMIWSATLGLPMSLESVGAVLGLDKQKLTEGKNLIKYFCLPCNPTKVNGGRT----- 67 Query: 144 DRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVD 200 RNK H +E W LF Y K DV V I ++L P+ + +YLDQTINDRG +D Sbjct: 68 -RNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQTINDRGIEID 126 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + ++ +T L EL+ +T GL + + L+ +++WL E GL +E L + Sbjct: 127 SLFVESAIKLDQEVKTHLMSELKHVT-GLENPNSVLQ-MRSWL-KEHGLEMESLGKKEVA 183 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 + L K + + +V R + ++S+V K + A D R RG +F GA+RTGR++ Sbjct: 184 KEL---KTVGKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFA 240 Query: 321 GCVFPPQNLPR-------PSRSH------EELDQIITHLPTSITSDPDPLQIISDCVRSC 367 G + QNLP+ +RS E L+ + +P ++ S +R+ Sbjct: 241 GRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTL----------SQLIRTA 290 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VT 425 I G K +VAD + IEARVLAW+AGE+W+++ F G+D+Y ++ ++ F+V + V Sbjct: 291 FIPRTGFKFIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVN 350 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 R GK+ ELALGY G A + M + GL LV Sbjct: 351 GHLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEELQPLV------------------ 392 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 AWR+ + V+ LW ++ +A +Q + I+ + Sbjct: 393 -----------------------DAWRKSNPMVTTLWWDVDRAVKQCVHEH---ISVRTH 426 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVY--------RDVGNNRSYLNT-TTRQLTREYTYGG 595 ++ Y LI+ LPS R L Y + G + +Y +T++ R +YG Sbjct: 427 NIVFTY---KSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGP 483 Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655 K ENI QA++RDIL M T Y IV VHDE + ET + + LM P Sbjct: 484 KFVENITQAIARDILLYAMQ--TLKEYRIVAHVHDEAIIETDKN--VSVQSVCELMGRTP 539 Query: 656 SWAKGLPLKAEGYESKRYRK 675 WA+GL L+A+GYE + Y+K Sbjct: 540 PWAEGLVLRADGYECEFYKK 559 >gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5] Length = 773 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 143/365 (39%), Positives = 210/365 (57%), Gaps = 25/365 (6%) Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L++++++DGRLRGT Sbjct: 34 GITLPDMQASTLQRRIN-DPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGT 92 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCV 364 QF GASRTGRW+G VF P NLPRP+ +D I L + D D +Q+ S + Sbjct: 93 KQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQLTSSAL 151 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNV 419 R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY YAR+FN+ Sbjct: 152 RGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNL 211 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + P +A Sbjct: 212 LPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVKREAT 271 Query: 480 NFCRWMQENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-GKA 537 ++ + E + + E +F+ C+ +K+ WR H + W ++ A +Q I++ G A Sbjct: 272 SWYQKSVETDKTYGLSEKIFVN--CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPGIA 329 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLNTT--TRQLTREYT 592 RK + +++DK L + LPSGRSL Y R +Y+ T +R+ R T Sbjct: 330 FKCRK------LSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRKWERLKT 383 Query: 593 YGGKL 597 YGGKL Sbjct: 384 YGGKL 388 Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 43/77 (55%), Positives = 54/77 (70%) Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENI Q+ +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N WA Sbjct: 696 ENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHWA 755 Query: 659 KGLPLKAEGYESKRYRK 675 LPL A G+E+ RYRK Sbjct: 756 WDLPLSANGFETYRYRK 772 >gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4] Length = 773 Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 208/368 (56%), Gaps = 31/368 (8%) Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 G+ L D+ +T QR ++ + + P ++ + R+++ ++ K L++++++DGRLRGT Sbjct: 34 GITLPDMQASTLQRRIN-DPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGT 92 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCV 364 QF GASRTGRW+G VF P NLPRP+ +D I L + D D +Q+ S + Sbjct: 93 KQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICD-DIMQLTSSAL 151 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNV 419 R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY YAR+FN+ Sbjct: 152 RGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNL 211 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N +A Sbjct: 212 LPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGVKREA- 270 Query: 480 NFCRWMQ---ENHPEHAI-EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN- 534 RW Q E + + E +F+ C+ +K+ WR H + W ++ A +Q I++ Sbjct: 271 --MRWYQKSVETDKTYGLSEKIFV--TCDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 326 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY---RDVGNNRSYLNTT--TRQLTR 589 G A RK + +++DK L + LPSGRSL Y R +Y+ T +R+ R Sbjct: 327 GIAFKCRK------LSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRKWER 380 Query: 590 EYTYGGKL 597 TYGGKL Sbjct: 381 LKTYGGKL 388 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 43/77 (55%), Positives = 54/77 (70%) Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENI Q+ +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N WA Sbjct: 696 ENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 755 Query: 659 KGLPLKAEGYESKRYRK 675 LPL A G+E+ RYRK Sbjct: 756 WDLPLSANGFETYRYRK 772 >gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68] Length = 385 Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 140/379 (36%), Positives = 206/379 (54%), Gaps = 10/379 (2%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R +AS ++ K L++ Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKELLAIRQQASTTSTSKYKALMKG 303 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 363 Query: 356 PLQIISDCVRSCVIASEGK 374 +++ S +R C+IA GK Sbjct: 364 IMELTSSALRGCIIAPTGK 382 >gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 239/457 (52%), Gaps = 25/457 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L+N ++ A N+ FER L + W C+ V + + GLP +L+ +G L L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+ E E +++DQ INDRG +D L + + +V + Q + LT GL + Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT-GLANP 239 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + L+ LK WL + G+ L++ + ++L + T QV R S+S+V K Sbjct: 240 NSPLQ-LKDWL-QQQGIKTNSLSKASVAQLLQTT---TGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQIITH-----L 346 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S EE +++ L Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F E Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGY 441 D+Y + ++ F V + + + R GK+ ELALGY Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGY 448 >gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905] Length = 533 Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 151/421 (35%), Positives = 215/421 (51%), Gaps = 19/421 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 124 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++ RL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWN 184 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 185 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ + L ++ R++AS ++ K L++ Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIA-DPDLPSAVKEMLAIRLQASTTSTSKYKALMKG 303 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I P + L Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGI-EAPNAAAKTLKCL 362 Query: 358 QIISDCVRSCVIAS----EGKKLVVADLAGIEARVLAWMAGEQWK------LKAFETGED 407 QI S V + S KL D EA + WK LKAF G Sbjct: 363 QIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRH 422 Query: 408 L 408 L Sbjct: 423 L 423 >gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e] gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e] Length = 461 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/451 (33%), Positives = 231/451 (51%), Gaps = 21/451 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EAL-----ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L A+ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 GEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTR 169 E L + S K + GK LI RF K R + H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E++K++ + E E + +LDQ INDRG+ VDVALA + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ L + + ++T +L+ ++ L A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLA-DEDLPDDARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ-IITHL 346 K L+ +SD R RG LQ+ GA RT RW+G F PQNL R +ELD+ I L Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G+K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVT---KDQRAIGKV 434 D+Y T + F + P + KD R IGK Sbjct: 417 DIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447 >gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 234/457 (51%), Gaps = 25/457 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L + G +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + W C+ V + + GLP +L+ VG L L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + + Q + LT GL + Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLT-GLANP 239 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + L+ LK WL + G+ + L + + ++L + T QV R S+S+V K Sbjct: 240 NSPLQ-LKNWLH-QQGVETDSLAKASVAQLLQTT---TGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQII-----THL 346 + +AM DG + G LQF GA+RTGRW+G + QNLPR S EE ++ T L Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+G VAD + +EARV+AW++GE+W+ AF E Sbjct: 355 AMLYESVPD---VLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGY 441 D+Y + ++ F V + + + R GK+ ELALGY Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGY 448 >gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3] gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3] gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5] gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12] Length = 1032 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 151/452 (33%), Positives = 230/452 (50%), Gaps = 23/452 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EAL-----ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L ++ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120 Query: 113 GEALKL--SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L + S K + GK LI RF K R H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPLSSKEQE---LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E++K++ + E E LW LDQ INDRG+ VDVALA + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLW-LDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKY 239 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G ++ L L+ L + + ++T +L+ ++ L A + R+ A+ + Sbjct: 240 GGSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLA-DEDLPDDARTIIEMRLGAAST 295 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ-IITH 345 A K L+ +SD R RG LQ+ GA RT RW+G F PQNL R +ELD+ I Sbjct: 296 ASTKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAAL 355 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 L D ++ + VRSC+I G+K VVAD + +E R LAW+AGE+ L F G Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415 Query: 406 EDLYVTTYARSFNVAPAQVT---KDQRAIGKV 434 D+Y T + F + P + KD R IGK Sbjct: 416 LDIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447 Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 130/285 (45%), Gaps = 45/285 (15%) Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW--MQE-NHPEH 492 EL LGY+GG AF A GL+L A + W W +QE P H Sbjct: 748 ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 807 Query: 493 AIE---------DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN------GKA 537 E D + C+ +K+ WR+ H W +L + N A Sbjct: 808 PGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAGA 867 Query: 538 IIARKRRDVPLVYMKKDKNN---------LILMLPSGRSLVYRDVG-------NNRSYLN 581 + R ++ + ++ L + LPSGR L Y +G + +N Sbjct: 868 HLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRIN 927 Query: 582 TTTR-------QLTRE----YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 T R QLTR+ YT+GGK ENIVQA+ RD+LA M+N GY IVL+VHD Sbjct: 928 TNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVHD 987 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+VCETPDT ++ + L LM + P WA G PL AEG E KRY K Sbjct: 988 ELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032 >gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 362 Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 131/343 (38%), Positives = 196/343 (57%), Gaps = 8/343 (2%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I +T G YAE V V+LFA+ D PV +WD +P L++A+ + Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIAD 64 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 D + HNS+F+RTVL+ A L P+ RW T+V A ++ LP AL A+ E L + K Sbjct: 65 PDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQDK 124 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H W+ F Y D+ RE++KRL + Sbjct: 125 AKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + EL W+ DQ INDRG+CVD+ L H + VD + +L ++ +T G V ++ + Sbjct: 185 YQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQRD 244 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 + + G+ L D+ ++T +R ++ + L P ++ + R++AS ++ K TL+++ Sbjct: 245 AMIKHIVESYGVELPDMQKSTIERRIA-DPDLPPAVKELLHIRLQASATSTSKYKTLLKS 303 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++SDGRLRGTLQF GASRTGRW+G +F PQNL R S S EE++ Sbjct: 304 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIE 346 >gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 971 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 240/477 (50%), Gaps = 41/477 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL +D ET S ++L KCG+ KYAE ++LF + D V++ D +P+ + Sbjct: 1 MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKAC----------FNLDIPIHR----------WICTLV 98 +AL + VT A N+ FER L F P+ + W C++V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAW 154 + GLP +L+ VG L L +QKM+EG+ELI FC K RN P H + W Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALDKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQ--ELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F Y K DV V I +RL+ EQ E ++LDQ INDRG +D+ LA + Sbjct: 181 NQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAMDA 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R L L+ T GL + + L+ L WL + GL + L + + +L + ++ Sbjct: 241 KSRESLMAALKEKT-GLENPNSVLQML-GWL-EDHGLKTDSLGKKQVKELLKTAQEPLRS 297 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR- 331 +Q+ R + ++S+V K + A+ DGR RG QF GA+RTGR +G QNLP+ Sbjct: 298 VLQL---RQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQN 354 Query: 332 --PSRSH-EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 P S EL + + + D P ++S +R+ + G K VV+D + IEARV Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIP-DVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQG 443 ++WMAGE+WK AF G+D+Y +T ++ F V + V + R GK+ ELA +G Sbjct: 414 ISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACIAEG 470 Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 19/177 (10%) Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 ++WR + + + W ++ A + I+ + R V M L + LPSGR Sbjct: 804 QSWRSANPHIVDFWWQVDGAVKTAIKQRIPVWVNNIRFVCQSGM------LFIELPSGRQ 857 Query: 568 LVYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L Y +G N+ +Y T++ R +YG K ENIVQ +RDIL M T Sbjct: 858 LSYVKPRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIVQGTARDILCYAMQ--T 915 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E + E + + M+ P WA+GL L+A+GYE Y+K Sbjct: 916 LRCCAIVGHVHDELIIEC--SKEVSVDAICEQMSRTPPWAEGLVLRADGYECAFYQK 970 >gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterococcus sp. 7L76] Length = 545 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 151/449 (33%), Positives = 226/449 (50%), Gaps = 52/449 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L +D ET S +DL+KCG+ KY+E D ++LFA+ D PVE+ D D +P + Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 +L + V A N+ FER L LD + W CT+V + GLP +L VG L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFC---------KGETHECLYDRNKPNHREA-WRLFGEYCKGDVT 166 L+ QK+ EGK+LI FC G T RN P+H W F Y DV Sbjct: 121 GLNKQKLTEGKDLIRYFCVPCNPTKVNGGRT------RNLPHHAPTKWSAFKTYNSRDVE 174 Query: 167 VTREIFKRLEP---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +L L S +E W LDQ INDRG +D Q+ ++ + L+Q+L+ Sbjct: 175 VEIAIQGKLSNFPVLDSVWKEYW-LDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQ 233 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT GL + + L+ ++ WL L+ GL E L + +L + + QV R + Sbjct: 234 ELT-GLENPNSVLQ-MRGWL-LDHGLETESLGKKAVDELLE--QPIDENLKQVLVLRQQL 288 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS-------- 335 ++S+V K + SD R RG QF GA+RTGR++G QNLP+ S Sbjct: 289 AKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSL 348 Query: 336 -----HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 E L+ + ++P ++S+ +R+ + EG K +V+D + IEARV+A Sbjct: 349 VKQSNFEMLNILYGNVPN----------VLSELLRTAFVPREGMKFIVSDFSAIEARVIA 398 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNV 419 W++GE+W+ + F+ G D+Y + ++ F V Sbjct: 399 WLSGEKWRQEVFKNGGDIYCASASQMFGV 427 >gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1] gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1] Length = 1062 Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 229/467 (49%), Gaps = 40/467 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 LF+D ET S +DL K G YAE +++ + D+ V+ WDC P MP+ L++AL Sbjct: 7 LFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPRELRKAL 66 Query: 62 ENTD----VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 ++A+ F+R V++ + +D+P+ + T+++A + LP +L + L Sbjct: 67 RQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDMQCQVLG 126 Query: 118 LSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + ++ K + GK LI RFCK R + H E W F Y D+ RE++ R Sbjct: 127 VDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREVYWR 186 Query: 175 LEPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + + KE E+ +DQ INDRG+ VDV LA+ + V + +L +E G ++ Sbjct: 187 IPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERFGGKLTG 246 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + L L+ + + + ++T +L + + + R+ AS +A K N Sbjct: 247 NDFLPILRD---IAPAFTIHNAQKSTLNDLLE-DPDFPDEGKALIEMRLGASSTASTKYN 302 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS------------------- 333 LV +++DGR RG LQ+ GA RT RW+G F PQNL R Sbjct: 303 PLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESDVS 362 Query: 334 ---RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 RSH + I + L + D ++ + VR C+I ++GKK VVAD + +E R LA Sbjct: 363 FWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRGLA 422 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---KDQRAIGKV 434 W+AGE+ L F+ G D+Y T + F + P + KD R IGK Sbjct: 423 WVAGEKTALMVFKAGRDIYCETAGKMFGLDPDYIKANRKDLRQIGKA 469 Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 107/293 (36%), Positives = 137/293 (46%), Gaps = 53/293 (18%) Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH----PE 491 EL LGY GG AF + A GL+L T A ++K W A+ + + N P+ Sbjct: 770 ELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARINEAKRPPK 829 Query: 492 HAIED--------LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-GKA----- 537 +D + C+ +K+ WR+ H + W EL A I N GKA Sbjct: 830 PGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPGKAYWAGA 889 Query: 538 -----------IIARKRRDVPLVYMKKDKNN-----LILMLPSGRSLVY----------- 570 I+ K + P ++D N L + LPSGR + Y Sbjct: 890 NVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEI 949 Query: 571 -RDVGNNRSYL-------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 D G R+ N TTRQ +YTYGGKLTENIVQA+ RDILA M AGY Sbjct: 950 DEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGY 1009 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +IVL+VHDE++ E PDTD++ L LM P WAKG PL AEG RYRK Sbjct: 1010 EIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062 >gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 422 Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 163/410 (39%), Positives = 206/410 (50%), Gaps = 59/410 (14%) Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASE 372 TGRW+G +F P NLPRP+ S + I + + D D + + S +RSC+IA Sbjct: 21 TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFD-DVMALTSSALRSCLIAPT 79 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAF------------------------------ 402 KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 80 HKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPIT 139 Query: 403 ----------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 G+D+Y YA SF +AP VTK+QR IGKV ELALGY GG AF A Sbjct: 140 LQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFA 199 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWR 511 + ++L A + P ++A +W + N P + D AC+ K+AWR Sbjct: 200 AMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWR 256 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 H ++ W L F T G A + + Y + L L LPSGR L Y Sbjct: 257 NAHPAIAAFWQALQ--FAATDAIGHPETAHTCCGITVQY---SRAWLRLRLPSGRVLYYA 311 Query: 572 ----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA M AGY IV Sbjct: 312 APRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIV 371 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 LTVHDE++ E D FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 372 LTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 422 Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 160/410 (39%), Positives = 205/410 (50%), Gaps = 59/410 (14%) Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASE 372 TGRW+G +F P NLPRP+ S + I + + D D + + S +RSC+IA Sbjct: 21 TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFD-DVMALTSSALRSCLIAPT 79 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFE----------------------------- 403 KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 80 HKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPIT 139 Query: 404 -----------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 G+D+Y YA SF +AP VTK QR IGKV ELALGY GG AF A Sbjct: 140 LQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFA 199 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWR 511 + ++L A + P ++A +W + N P + D AC+ K+AWR Sbjct: 200 AMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWR 256 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 H ++ W L A I + + + M+ + L + LPSGR L Y Sbjct: 257 NAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYA 311 Query: 572 ----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA M AGY IV Sbjct: 312 APRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIV 371 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 LTVHDE++ E D FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 372 LTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 470 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 164/525 (31%), Positives = 253/525 (48%), Gaps = 76/525 (14%) Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 EI ++LE P+ E E +++DQ INDRG +D L + + +V + Q + LT Sbjct: 2 EITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT- 60 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 GL + + L+ LK WL + G + L++ + ++L + T + Q+ R S+S+ Sbjct: 61 GLANPNSPLQ-LKDWL-QQQGAKTDSLSKASVAQLLQTT---TGKVHQILALRQLLSKSS 115 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH-EELDQI---- 342 V K + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S EE ++ Sbjct: 116 VKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLVKQG 175 Query: 343 -ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +T L S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ +A Sbjct: 176 NVTALAMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQEA 232 Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F ED+Y + ++ F V + + + R GK+ ELALGY G A + M +T Sbjct: 233 FAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK---- 288 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 LV T+ E P + + WR + + Sbjct: 289 -----LVLTDD----------------ELPP---------------LVQMWRNASPHIVQ 312 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 W ++ +A ++ I K + + + +Y + L L SGR L Y +G NR Sbjct: 313 FWWDVDKAAKECI---KTHLPQTTHGMKFIYR---SGCMFLRLRSGRYLCYPKPKIGTNR 366 Query: 578 ------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +++ T ++ R TYG KL ENIVQA SRD+LAE M +V+ +HD Sbjct: 367 FGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHD 426 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E V + P + + LMT P WA GL L A G+ S Y+K Sbjct: 427 EAVIDAPSNRSLDT--MVQLMTEVPDWANGLILNAAGFVSDFYKK 469 >gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated bacterium] Length = 206 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 107/205 (52%), Positives = 129/205 (62%), Gaps = 2/205 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +D PV+LWD +P L + Sbjct: 1 MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL+ Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K EEGK LIARFCKG YD + NH +AW LF EYCK DV TRE+FK L PL Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203 + +E+ LW LDQ INDRGY +D+ L Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDL 205 >gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening disease-associated, Peptide, 207 aa] Length = 207 Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 106/205 (51%), Positives = 129/205 (62%), Gaps = 2/205 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 ++ LFID ETRSP L K G+ YAE + L A+ +D PV+LWD +P L + Sbjct: 2 VSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 61 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL+ Sbjct: 62 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 121 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K EEGK LIARFCKG YD + NH +AW LF EYCK DV TRE+FK L PL Sbjct: 122 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 181 Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203 + +E+ LW LDQ INDRGY +D+ L Sbjct: 182 NPEERTLWLLDQEINDRGYRIDLDL 206 >gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] Length = 419 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 137/406 (33%), Positives = 209/406 (51%), Gaps = 23/406 (5%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 TL ID ET S +DL KCG+ YA+ ++LFA+ FDD ++ D + + +K A Sbjct: 8 TLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKNA 67 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + + A N+ FERT L + + W+CT V + LP +L+ VG L LS Sbjct: 68 LSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLSE 127 Query: 121 QKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE 176 QK++EGK+LI F CK RN P H E W+ F YC DV V + I ++L Sbjct: 128 QKLKEGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQKLH 187 Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 P+ E + LDQ INDRG VD L + D+ + GL + Sbjct: 188 KFPIPESEMAFYRLDQEINDRGVLVDRELVEQ-SITCDLLHKDIVTNRAYEVTGL-ENPN 245 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + +LK WL E G+ ++ L++ ++ +A+++ R+ ++++V K + Sbjct: 246 SVSQLKGWLS-ERGVEIDSLSKGAVAELIEDADGEVLEALKL---RLLMAKTSVKKYEAI 301 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT------HLPT 348 ++ SDGR+ G LQF GA+RTGRW+G + QNLP+ S EL + + L Sbjct: 302 ERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEELEL 361 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 S P+ ++S+ +R+ I EG + +VAD + IEARVLAW++G Sbjct: 362 FYESTPN---VLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404 >gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1] gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 524 Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 147/485 (30%), Positives = 220/485 (45%), Gaps = 108/485 (22%) Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L TWL + G+ E + + +++L+ + + A Q R A++++ KL +V+ Sbjct: 100 LTTWL-RDQGVETEGVAKAAVRQMLAGD--IEGAARQAVEIRAEAAKASTAKLTAMVKCA 156 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD--- 355 DGR RG L + + TGRW+G + QNLPR +L +P I D D Sbjct: 157 CDDGRARG-LHLVYGAGTGRWAGRLIQLQNLPRGVIKKADL-----AIPLIIDGDIDLVS 210 Query: 356 -----PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TG 405 PL +IS +R C+I +EG + +D + IE R+ AW+A E+WK++AF TG Sbjct: 211 MLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTG 270 Query: 406 EDLYV-----------TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 DLY+ YA N + + ++ GKV ELALG+ GG AFQ MA+ Sbjct: 271 RDLYLIGAEKILTLLKVLYAHPLN----ENSPERTPYGKVPELALGFGGGVGAFQSMAAI 326 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + D E +++K AWR+ H Sbjct: 327 YGMKVT----------------DEE-----------------------ADQIKVAWREAH 347 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--- 571 RV LW + A I N +++ + V L ++LPSGR L Y Sbjct: 348 PRVVALWRNMEDAAFNAISNPGRVVSTAGGRIKYVV---KGGFLWMVLPSGRPLAYAHPR 404 Query: 572 --------DVGNNRSYL---------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 ++G + L N+ TR+ R TYGG L EN +QA++RD+LA + Sbjct: 405 IEKRRPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANAL 464 Query: 615 MNATKAGYDIVLTVHDEIVCE----TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 + AGY +V+ VHDE + E DEF + +M P+WA GLP+ A G+ Sbjct: 465 LKLEAAGYPVVIHVHDEALAEVRKGVGSVDEFKS-----IMCDTPAWAAGLPVAAAGWRG 519 Query: 671 KRYRK 675 RYRK Sbjct: 520 SRYRK 524 >gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1] gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 516 Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 143/469 (30%), Positives = 214/469 (45%), Gaps = 107/469 (22%) Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T+ +++L+ + + A Q R A++++ KL +V+ DGR RG L + + Sbjct: 107 TKAAVRQMLAGD--IEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARG-LHLVYGA 163 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD--------PLQIISDCVRS 366 TGRW+G + QNLPR S +L +P I D D PL +IS +R Sbjct: 164 GTGRWAGRLIQLQNLPRGSVKKADL-----AIPLIIDGDIDLVSMLFGPPLDVISSNLRG 218 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYV----------- 410 C+I +EG + +D + IE R+ AW+A E+WK++AF TG DLY+ Sbjct: 219 CLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLK 278 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA N + ++++ GKV ELALG+ GG AFQ MA+ G+ + Sbjct: 279 VPYAHPLN----ENSQERTPYGKVPELALGFGGGVGAFQSMAAIYGMKVT---------- 324 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 D E +++K AWR+ H RV LW + A Sbjct: 325 ------DEE-----------------------ADQIKVAWREAHPRVVALWRNMEDAAFN 355 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-----------DVGNNRSY 579 I N +++ + V L ++LPSGR L Y ++G + Sbjct: 356 AISNPGRVVSTAGGRIKYVV---KGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIK 412 Query: 580 L---------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 L N+ TR+ R TYGG L EN +QA++RD+LA ++ AGY +V+ VHD Sbjct: 413 LKDTITFMSVNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHD 472 Query: 631 EIVCE----TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + E DEF + +M P+WA GLP+ A G+ RYRK Sbjct: 473 EALAEIRKGVGSVDEFKS-----IMCDTPAWAAGLPVAAAGWRGSRYRK 516 >gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 377 Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 127/332 (38%), Positives = 170/332 (51%), Gaps = 49/332 (14%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F +Y + DV R++ KRL + E LW+LDQTINDRG VD LA V Sbjct: 3 WAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L + LT G+V ++ + L L G+ L D+ + T +R L + L P Sbjct: 63 ERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCL--DDPLLP 120 Query: 272 QAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + + ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 331 RPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 RP+ S E + I + + D D + + S +RSC+IA KKLVVADL+ IE R Sbjct: 181 RPTLSQEAITVGIDAMKAGCVDLVFD-DVMALTSSALRSCLIAPTHKKLVVADLSNIEGR 239 Query: 388 VLAWMAGEQWKLKAF----------------------------------------ETGED 407 VLAW+AGE KL AF G+D Sbjct: 240 VLAWLAGETPKLHAFGEFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHAPIRKGDD 299 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 +Y YA SF +AP VTK QR IGKV ELAL Sbjct: 300 IYKRAYAHSFGIAPQAVTKQQRQIGKVQELAL 331 >gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 384 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 185/368 (50%), Gaps = 55/368 (14%) Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----------- 403 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 24 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGT 83 Query: 404 -----------------------------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 G+D+Y YA SF +AP VTK+QR IGKV Sbjct: 84 WHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 143 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHA 493 ELALGY GG AF A+ ++L A + P ++A +W + N P Sbjct: 144 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFG 201 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L A I + + + M+ Sbjct: 202 LSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQY 255 Query: 554 DKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 256 SRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSR 315 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG Sbjct: 316 DVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 375 Query: 668 YESKRYRK 675 +++ RYRK Sbjct: 376 FQTHRYRK 383 >gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/226 (45%), Positives = 143/226 (63%), Gaps = 12/226 (5%) Query: 253 DLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 D+ +T QR + N P+A+ ++ + R+++ ++ K L+++++ DGRLRGT QF Sbjct: 1 DMQASTLQRRV--NDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFC 58 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCV 368 GASRTGRW+G +F P NLPRP+ + +D+ + L + D D +Q+ S +R C+ Sbjct: 59 GASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICD-DIMQLTSSALRGCI 117 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQ 423 IA +GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY YAR+FN+ P Sbjct: 118 IAPQGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKN 177 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 VTK QR IGKVMEL LGY GG AF A GLNL+ A N Sbjct: 178 VTKAQRQIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAEAALPN 223 >gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3] gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3] Length = 656 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 199/715 (27%), Positives = 305/715 (42%), Gaps = 108/715 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFET S DLT+ G+ +Y D + F F +LW+ +P+V+ Sbjct: 6 LFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEVGQR--VPEVITRH 63 Query: 61 LENTDVTIVAHNSYFE----RTVLKACFNL-DIP---IHRWICTLVLARSNGLPSALKAV 112 + + VAHN+ F+ TVL+ D+P I + C+ AR NGLP +L Sbjct: 64 VRAGHL-FVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 122 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + + D +H E + +Y D ++ Sbjct: 123 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVGVW 176 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + PL ++EQ + +D IN RG VDV A + + +LD E+ LT G V + Sbjct: 177 ENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGVLA 236 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +EK+KT+ G ++D T +++ ++ L Q+ R+ ASR+ K + Sbjct: 237 VSEVEKIKTYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 292 Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQNL----PRPSRSHEE----LDQ 341 + + GRL+ + + GA T R +G Q L PRP + + LD Sbjct: 293 AAILRAHVGGRLQHSTIYHGALSGRSTARGAGGA---QTLNTARPRPGKKTADCEAILDA 349 Query: 342 IITHLPTSITS-DPDP-LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398 + H ++S + P L ++D R A++ G LV ADL+GIEAR W+AG+ Sbjct: 350 CLRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLEL 409 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AFE G D Y A F V VTKDQR IGKV LAL Y GGA AF MA+ G++ Sbjct: 410 LEAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVH 469 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L P ++++ + WR Sbjct: 470 L------------------------------PPEQVDEIVLN---------WRAARPAFE 490 Query: 519 ELWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573 W+ + ++ N + + R V D L + LPSGR++ Y + Sbjct: 491 RWWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFVHDGRALRMQLPSGRAISYHNARLH 550 Query: 574 ---GNN---------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 G N Y+ T R++ L+ N+ Q ++RD+ +++ + Sbjct: 551 LEPGANVPIAIYDKPEGYIETLDRKI---------LSNNMTQGLARDLFWSVLLDVDRV- 600 Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV V+DE + E + E L M +W GLPL AEG+ R+RK Sbjct: 601 EQIVHHVYDEALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655 >gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage] Length = 234 Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 100/226 (44%), Positives = 143/226 (63%), Gaps = 12/226 (5%) Query: 253 DLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 D+ +T QR + N P+A+ ++ + R+++ ++ K L++++++DGRLRGT QF Sbjct: 1 DMQASTLQRRV--NDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFC 58 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCV 368 GASRTGRW+G +F P NLPRP+ + +D+ + L + D D +Q+ S +R C+ Sbjct: 59 GASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICD-DIMQLTSSALRGCI 117 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQ 423 IA +GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY YAR+FN+ P Sbjct: 118 IAPQGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKN 177 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 VTK QR IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 178 VTKAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPN 223 >gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2] gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2] Length = 658 Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 199/726 (27%), Positives = 311/726 (42%), Gaps = 129/726 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFE S DL G+ +Y + F F +LW+ + P+ Q+L Sbjct: 8 LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWE-LGQPIPRQILAHI 66 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI--------------CTLVLARSNGLP 106 T VAHN+ F+ + +N +P RW+ C+ AR NGLP Sbjct: 67 AAGK--TFVAHNAAFDALI----WNDVLP--RWVKADLPQLNLRGQVQCSAARARYNGLP 118 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGE-----THECLYDRNKPNHREAWRLFGEYC 161 L EAL L QK EG + TH L+ R +Y Sbjct: 119 GGLGRAAEALGLPLQKDREGAAAMKELMHNPEWTPATHPELFARTY-----------KYA 167 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D V +++ +P+ KEQ W LD IN RG+ VDV A + ++ + + +D E Sbjct: 168 LLDTDVMVALWEATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFE 227 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNR 280 +E+ T G + ++ +++++++ G L++ + + +L+ + P+ ++ V R Sbjct: 228 VETATQGKILTTSVIKQIQSFA-AGLGAELDEAGRESVKALLTRDD--VPEVLRDVLTLR 284 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS--GCV-FPPQNLPRPSRSHE 337 + ASR A K + ++ A + +GR+ + + GA +GR + GC N+ RP R Sbjct: 285 LDASR-APKKHDAILRA-HVNGRMCHSTVYHGA-LSGRSTAMGCGDVQLLNVARP-RPGR 340 Query: 338 ELDQIITHLPTSITSDPD---------PLQIISDCVRSCVIASE-GKKLVVADLAGIEAR 387 ++ IT+L + D D PL ++D R A+ G LVVADL+GIEAR Sbjct: 341 KVKDTITYLDAARRRDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEAR 400 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446 W+A ++ L +E G D Y A F++ VT DQR IGK+ LAL + GG Sbjct: 401 KGPWLANDEGMLVEYEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDG 460 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A MA GL L+ ED W Sbjct: 461 ALDNMAKAYGLELS---------------EDLRRKIVW---------------------- 483 Query: 507 KKAWRQKHSRVSELWNEL-HQAFEQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPS 564 ++R+ H +S W L + A + G+A++ R + +D L + LPS Sbjct: 484 --SYRESHPALSTWWASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPS 541 Query: 565 GRSLVYRDVGNNRSYL--------------NTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 GR++ Y N R L N L R+ L+ N+ Q ++RD+ Sbjct: 542 GRAISYH---NARLVLEPGASAPIAVYDKPNGVVETLDRKI-----LSNNMTQGLARDLF 593 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 E M++ IV V+DE++ E P+ E L ++ P WA GLPL AEG+ Sbjct: 594 WEAMLSVAPV-EQIVHHVYDEVILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFV 652 Query: 670 SKRYRK 675 S +RK Sbjct: 653 SPYWRK 658 >gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae] gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 100/226 (44%), Positives = 143/226 (63%), Gaps = 12/226 (5%) Query: 253 DLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 D+ +T QR + N P+A+ ++ + R+++ ++ K L++++++DGRLRGT QF Sbjct: 1 DMQASTLQRRV--NDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFC 58 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCV 368 GASRTGRW+G +F P NLPRP+ + +D+ + L + D D +Q+ S +R C+ Sbjct: 59 GASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICD-DIMQLTSSALRGCI 117 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQ 423 IA +GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY YAR+F + P Sbjct: 118 IAPQGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPEN 177 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 VTK QR IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 178 VTKAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPN 223 >gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage] Length = 234 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 99/226 (43%), Positives = 141/226 (62%), Gaps = 12/226 (5%) Query: 253 DLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 D+ +T QR + N P+A+ ++ + R+++ ++ K L++++++DGRLRGT QF Sbjct: 1 DMQASTLQRRV--NDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFC 58 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCV 368 GASRTGRW+G +F P NLPRP+ + +D+ + L + D D +Q+ S +R C+ Sbjct: 59 GASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICD-DIMQLTSSALRGCI 117 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQ 423 IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY YAR+F + P Sbjct: 118 IAPXGKKLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXN 177 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 VTK QR IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 178 VTKAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAALPN 223 >gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 368 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 137/414 (33%), Positives = 191/414 (46%), Gaps = 67/414 (16%) Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R++ S+++V K N + + M SD R+RG QF GA TGRW+G QNL + S EL Sbjct: 3 RLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL 61 Query: 340 DQIITHLPTSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + + D D P ++S VR+ A EG +L V+D + IEARV+AW A Sbjct: 62 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 121 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKM 451 EQW+L F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M Sbjct: 122 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 181 Query: 452 AS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + G+ N LV + W Sbjct: 182 GALEMGIEENELQGLVDS-----------------------------------------W 200 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + + W +A T+++ K R YMK K L++ LPSGR+L Y Sbjct: 201 RNANPNIVNFWKACQEAAINTVKSRKTHHTHGLR----FYMK--KGFLMIELPSGRALAY 254 Query: 571 RD--VGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 VG N ++ R+ ++ TYGGKL ENIVQA +RD+LA + G Sbjct: 255 PKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALG 314 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + IV VHDE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 315 FKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367 >gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43] gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43] Length = 656 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 187/715 (26%), Positives = 299/715 (41%), Gaps = 108/715 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFE S DLT+ G+ +Y +D + F F +LW+ + V+P+ + Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWE--YGNVVPKQIVMH 63 Query: 61 LENTDVTIVAHNSYFERTVLKACFNL-----DIP---IHRWICTLVLARSNGLPSALKAV 112 L + + VAHN+ F+ + D+P I + C+ AR NGLP +L Sbjct: 64 LTSGGL-FVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 122 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + + D +H E + +Y D ++ Sbjct: 123 CEALGLPVQKDTEGAKWMKEIAANP------DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + PL +EQ + +D IN RG VDV A + + +LD E+ LT G + + Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + K+K + G ++D T +++ ++ L Q+ R+ ASR+ K + Sbjct: 237 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 292 Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQNL----PRPSRSHEELDQIITH 345 + + GRL+ + GA T R +G Q L PRP + + + I+ Sbjct: 293 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGA---QTLNTARPRPGKKTADCEAILDA 349 Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398 + S P+ L ++D R A++ G LV ADL+GIEAR+ W+A + K Sbjct: 350 CLRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPK 409 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AFE G D Y +++ VTKDQR +GK +LALG+ G AF MA+ G++ Sbjct: 410 LEAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVH 469 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L PE E ++ WR Sbjct: 470 LP-----------------------------PEQVSEIVY----------NWRAGRPAFE 490 Query: 519 ELWNEL-HQAFEQTIENGKAIIAR-KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573 W+ + A + G+ I+ R + + KD L + LPSGR++ Y + Sbjct: 491 RWWSLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLH 550 Query: 574 ---GNN---------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 G N Y+ T R++ L+ N Q +SRD+ +++ + Sbjct: 551 LEPGANVPIAIYDKPEGYVETLDRKI---------LSNNQTQGLSRDLFWSVLLDVDRV- 600 Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +IV ++DE + E + L M +W GLPL AEG+ R+RK Sbjct: 601 EEIVHHIYDEALLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655 >gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 952 Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 117/328 (35%), Positives = 177/328 (53%), Gaps = 16/328 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL K G+ KYAE D ++LFA+ DD V++ D + ++P+ + Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT++ + GLP +L+ VGE LKL Sbjct: 61 SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM EGK LI F CK + RN P+H E W F EY + DV EI K+ Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIKKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK-LDQELESLTYGLVS 231 L P+ E E +++DQ INDRG +D L + + ++ R + +D+ +E LT GL + Sbjct: 181 LSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIE-LT-GLEN 238 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++ LK WL E GL ++ L + + L + + + +++ R S+S+V K Sbjct: 239 PNSPMQ-LKEWLN-EKGLEIDSLAKKDVESALKNAEGDIKEVLEL---RQELSKSSVRKY 293 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + + +D R+RG LQF GA+RTGR+ Sbjct: 294 DAMKNVKGNDKRVRGLLQFYGANRTGRY 321 Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/332 (31%), Positives = 161/332 (48%), Gaps = 62/332 (18%) Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 P ++S +R+ I EG + +V+D + IEARVLAW+AGE W L AF+ GED+Y +T ++ Sbjct: 670 PSDVLSQLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQ 729 Query: 416 SFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAP 472 F V + V D R GKV LA GY G A + M + GL+ + +V + Sbjct: 730 MFGVPVVKHGVNGDLRQKGKVATLACGYGGSVGALKAMGAIEMGLSEDELQSIVDS---- 785 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 WR+ + + LW ++ ++ + Sbjct: 786 -------------------------------------WREANPNIVSLWWDIDSVVKRVV 808 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT------ 584 + R + + + + +K L + LPS R L Y +G NR + Sbjct: 809 K------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVV 862 Query: 585 -RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 + + +YGGK ENIVQA++RDILAE MM K G++IV+ +HDE+V E +D + Sbjct: 863 GNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE---SDSSS 919 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +M+ PSWA GL L A+G+ES+ Y+K Sbjct: 920 IEEINEIMSLVPSWAPGLILDADGFESEFYKK 951 >gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012] gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012] gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74] Length = 449 Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 169/338 (50%), Gaps = 17/338 (5%) Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLY 143 L P+ RW T+V A ++GLP +L + E L + K + EGK LI FCK Sbjct: 4 LAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKL 63 Query: 144 DR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVD 200 R H E WR F Y D+ RE++ RL + + EL W+ DQ INDRG C+D Sbjct: 64 RRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMD 123 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + LA + VD E+ +L + + +T G V ++ + L + G+ L D+ +T + Sbjct: 124 MQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLE 183 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 R ++ N L ++ R++AS ++ K L++ ++ DGRLRGTLQF GASRTGRW+ Sbjct: 184 RRIA-NPDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWA 242 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS----EGKKL 376 G +F PQNLPRPS E++D+ I P + LQI S V + S KL Sbjct: 243 GRLFQPQNLPRPSLKQEQIDEGI-EAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKL 301 Query: 377 VVADLAGIEARVLAWMAGEQWK------LKAFETGEDL 408 D EA + WK LKAF G L Sbjct: 302 QALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 339 >gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46] Length = 330 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 172/329 (52%), Gaps = 19/329 (5%) Query: 6 IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58 ID E S D++KCG KY AED +++ A+ D PV D P + K Sbjct: 3 IDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYETFK 62 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L+L Sbjct: 63 IALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 +QK + GK LI F CK RN P H E W+ F +YC DV V I + Sbjct: 123 QNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMAIANK 182 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ P+++ EQ+ W DQ INDRG + +L N + + +L ++ + +T + + Sbjct: 183 IKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQITD--LEN 240 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L TWL E GL + +L + T Q L K+ T +A ++ R++ S+++V K N Sbjct: 241 PNSPTQLLTWLNKEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 + + M SD R+RG QF GA TGRW+G Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAG 325 >gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 352 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 177/376 (47%), Gaps = 68/376 (18%) Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSH 336 R SRS+V K +++ +D R G LQF GA+RTGRW+G + QNLPR P + Sbjct: 24 RQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLAQ 83 Query: 337 EE---LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 D L +S PD L S +R+ I S+G + +VAD + IEARVLAW+A Sbjct: 84 ARSLVRDGNGETLEMLYSSVPDTL---SQLIRTAFIPSKGHRFIVADYSAIEARVLAWLA 140 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQK 450 GE+ L AF+ GEDLY T + F V P + V + R GK+ LA GY G A + Sbjct: 141 GEETTLAAFKNGEDLYCATASAMFGV-PVEKHGVNSELRQKGKIAVLACGYNGSVGALKA 199 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 M + +K + +E + + AW Sbjct: 200 MGA------------LKMGLSEDE----------------------------LQPIVDAW 219 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + + +LW+++ A + I G+ + + +K L + LPSGR L Y Sbjct: 220 RAANPNIVQLWHDVDNAATRAISTGRPVTLGN------LGFEKKSGMLFINLPSGRRLAY 273 Query: 571 --RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 +G NR + T R+ + TYGGKL ENIVQA +RD+L E + AG Sbjct: 274 VKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEAITRIENAG 333 Query: 622 YDIVLTVHDEIVCETP 637 + IV+ +HDE+V + P Sbjct: 334 HRIVMHIHDEVVIDEP 349 >gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c] gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c] Length = 312 Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/253 (40%), Positives = 139/253 (54%), Gaps = 5/253 (1%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F EY + DV R++ KRL + E LW+LDQTINDRG +D L V Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L Q E+LT G V ++ + L L G+ L D+ + T R + + L Sbjct: 63 ERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVD-DPALPE 121 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLPR Sbjct: 122 TVRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181 Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P+ S E + I + D + + S +RSC+IA KKLVVADL+ IE RVL Sbjct: 182 PTLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRVL 241 Query: 390 AWMAGEQWKLKAF 402 AW+AGE KL AF Sbjct: 242 AWLAGETPKLHAF 254 >gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1] gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1] Length = 655 Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 192/715 (26%), Positives = 303/715 (42%), Gaps = 109/715 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFET S DLT+ G+ +Y +D + F F +LW+ V PV Q++ Sbjct: 6 LFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWE-VGQPVPKQIIGHL 64 Query: 61 LENTDVTIVAHNSYFE----RTVLKACFNL-DIP---IHRWICTLVLARSNGLPSALKAV 112 VAHN+ F+ TVL+ D+P I + C+ AR NGLP +L Sbjct: 65 ---NGSPFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 121 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + + D +H E + +Y D ++ Sbjct: 122 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFTRTYKYALIDTDAMVGVW 175 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + PL ++EQ + +D IN RG VDV A + + +LD E+ LT G + + Sbjct: 176 ENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + K+K + G ++D T +++ ++ L Q+ R+ ASR+ K + Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 291 Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQNL----PRPSRSHEELDQIITH 345 + + GRL+ + GA T R +G Q L PRP + + + I+ Sbjct: 292 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGA---QTLNTARPRPGKKTADCEAILDA 348 Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398 + S P+ L ++D R A++ G LV ADL+GIEAR+ W+A + K Sbjct: 349 CLRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPK 408 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AFE G D Y +++ VTKDQR +GKV +LALG+ GG AF MA+ G++ Sbjct: 409 LEAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVH 468 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L PE E ++ WR Sbjct: 469 LP-----------------------------PEQVSEIVY----------NWRAGRPAFE 489 Query: 519 ELWNELHQAFEQTIEN-GKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRDV--- 573 W+ + ++ G+ ++ RD + +D L + LPSGR++ Y + Sbjct: 490 RWWSLCEYSVLMALDQPGREVVMPVGRDFCSQITFVRDARALRMHLPSGRAISYHNARLH 549 Query: 574 ---GNN---------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 G N Y+ T R++ L+ N Q ++RD+ +++ + Sbjct: 550 LEPGANVPIAIYDKPEGYVETLDRKI---------LSNNQTQGLARDLFWSVLLDVDRV- 599 Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +IV V+DE + E + L M +W GLPL AEG+ R+RK Sbjct: 600 EEIVHHVYDEALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781] gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781] Length = 655 Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 189/715 (26%), Positives = 297/715 (41%), Gaps = 109/715 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFE S DLT+ G+ +Y +D + F F +LW+ V PV Q++ Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWE-VGQPVPKQIVGHL 64 Query: 61 LENTDVTIVAHNSYFE----RTVLKACFNL-DIP---IHRWICTLVLARSNGLPSALKAV 112 VAHN+ F+ VL+ D+P I + C+ AR NGLP +L Sbjct: 65 ---NGSPFVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 121 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + + D +H E + +Y D ++ Sbjct: 122 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVGVW 175 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + PL + Q + +D IN RG DV A + + +LD E+ LT G + + Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + K+K + G ++D T +++ ++ L Q+ R+ ASR+ K + Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 291 Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQNL----PRPSRSHEELDQIITH 345 + + GRL+ + GA T R +G Q L PRP + + + I+ Sbjct: 292 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGA---QTLNTARPRPGKKTADCEAILDA 348 Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398 + S P+ L ++D R A++ G LV ADL+GIEARV W+A + K Sbjct: 349 CLRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPK 408 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AFE G D Y +++ VTKDQR +GK +LALG+ GG AF MA+ G++ Sbjct: 409 LEAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVH 468 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L PE E ++ WR Sbjct: 469 LP-----------------------------PEQVSEIVY----------NWRAGRPAFE 489 Query: 519 ELWNELHQAFEQTIEN-GKAIIAR-KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573 W+ + ++ G+ I+ R + + KD L + LPSGR++ Y + Sbjct: 490 RWWSLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLH 549 Query: 574 ---GNN---------RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 G N Y+ T R++ L+ N Q ++RD+ +++ + Sbjct: 550 LEPGANVPIAIYDKPEGYVETLDRKI---------LSNNQTQGLARDLFWSVLLDVDRV- 599 Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +IV V+DE + E + L M +W GLPL AEG+ R+RK Sbjct: 600 EEIVHHVYDEALLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] Length = 838 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 146/538 (27%), Positives = 234/538 (43%), Gaps = 73/538 (13%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEALE 62 IDFETRSP D+ K G Y+ D + + V+LW H + E+ Sbjct: 41 IDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFF---IGESPA 97 Query: 63 NTDV--------TIVAHNSYFERTVLKACFNLDIPIH--------RWICTLVLARSNGLP 106 TD+ + AHN++FER + N+ IP + +W C+ A + LP Sbjct: 98 PTDLFAFILAGGLVEAHNAFFERCIWT---NIMIPRYGWPVIKPDQWRCSAAKASAMSLP 154 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCK------GETHECLYDRNKPNHREAWRLFG-- 158 +L+ A+ L K EG++L+ + CK E + ++D A++ G Sbjct: 155 RSLEEAVAAMDLGIDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYP 214 Query: 159 --------------EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 +YCK DV + L LS +E E W +DQ +N RG D+ +A Sbjct: 215 IVYHETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMA 274 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + R +L+ LE+LT G+ S+++ +K WL E L L D T + L Sbjct: 275 KQALSMASEWRKRLNSILEALT-GITSATK-RAAVKEWLVEEEDLDLPDTAADTLKHYLE 332 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE-AMNSDGRLRGTLQFLGASRTGRWSGCV 323 N++L+ +A +V ++++ K N +++ A D R R + + GA TGRW+G Sbjct: 333 -NEELSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKG 390 Query: 324 FPPQNLPRPSRSHEELDQ-----IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 N P ++ D+ + L D + +S +R ++A EG++L+V Sbjct: 391 IQVHNFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMV 450 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLY--VTTYARSFNVAPAQVTKDQ-------- 428 AD A IEAR + W A +Q L F G+D+Y + T F V ++ KD Sbjct: 451 ADYAAIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQ-KKIAKDWTHPDYTLH 509 Query: 429 ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 R GK L LGY G F G+ + A +++ PE+ + E + R Sbjct: 510 SGCRQFGKQAILGLGYGMGYMTFLLTCRKYGITFSR-AEVLRI-MGPEKLDKTEEWVR 565 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/130 (43%), Positives = 74/130 (56%), Gaps = 17/130 (13%) Query: 562 LPSGRSLVYRDV---------GNNRSYL-----NTTTRQLTREYTYGGKLTENIVQAVSR 607 LPSGR + Y D G + L + TR+ R TYGGK+ ENI QAV+R Sbjct: 710 LPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTATYGGKIVENITQAVAR 769 Query: 608 DILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 DI+AE M+N+ K G YD +++VHDE+VCE D D+ + LM+ P WA G P+ A Sbjct: 770 DIMAEAMLNSVKEGCPYDPIMSVHDELVCEV-DEDKGDLEEFETLMSDLPIWAAGCPIVA 828 Query: 666 EGYESKRYRK 675 E KRYRK Sbjct: 829 EAERFKRYRK 838 >gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c] gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c] Length = 252 Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 108/259 (41%), Positives = 138/259 (53%), Gaps = 15/259 (5%) Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +TK+QR IGKV ELALGY GG AF A+ ++L A + P ++A Sbjct: 1 MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMA--AQAVFPPLLLQEATELLE 58 Query: 484 WMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 W + NH P + D AC+ K+AWR H ++ W L A I + + Sbjct: 59 WTKANHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETT---- 113 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGK 596 + ++ + L L LPSGR L Y D SY+ T TR+ TR TYGGK Sbjct: 114 -HTCCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGK 172 Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656 L ENI QAVSRD+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P Sbjct: 173 LVENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPP 232 Query: 657 WAKGLPLKAEGYESKRYRK 675 WA+GLPL AEG+++ RYRK Sbjct: 233 WAEGLPLAAEGFDTYRYRK 251 >gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] Length = 596 Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 113/389 (29%), Positives = 159/389 (40%), Gaps = 90/389 (23%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSG-CVFPPQNLPRPSRSHEELDQIITHLPTS 349 L T+ DG L L++ GA TGRW+G QN R + Sbjct: 294 LETMQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREA---------------Y 338 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 DP R C++A G KL++ADL+ IE RVLAW+AG++ G +Y Sbjct: 339 YGVDP----------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIY 388 Query: 410 VTTYARSFNVAPAQVTKDQR---AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 S N + K+ + K + LGY G K FQ +A GL ++ Sbjct: 389 QAHAETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMS------ 442 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 IG A +R +R+ + R+ LW + Sbjct: 443 --------------------------------IGEA-KRTVDDFRKANPRIVSLWQAVED 469 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + I + + LPS RS+ Y DV TT R Sbjct: 470 SMRYHI----------------------GSTFFMYLPSLRSIRYFDVQEEEGLTATTERG 507 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646 R + YGGKLTEN+VQA +RD+ AEG++ KAG I+ TVHDE++CE P+ + Sbjct: 508 GRRLHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVET 567 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + L+ P W GLP+ AEG E+ Y K Sbjct: 568 VTDLLAQTPDWIPGLPVAAEGIETSCYTK 596 >gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] Length = 356 Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 120/404 (29%), Positives = 180/404 (44%), Gaps = 72/404 (17%) Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR----SHEELDQIITH 345 K + A +D R RG QF GA+RTGRW+G + QNLP+ + EL +I + Sbjct: 6 KYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIGDY 65 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 S+ D P +S +R+ IA G K VAD + IEARV+A +AGE W+ F+ G Sbjct: 66 DSLSMLYDDIP-DTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKNG 124 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTF 462 D+Y + ++ F+V + + R GK+ ELALGY G A + M + GL + Sbjct: 125 GDIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALEMGLTEDEL 184 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV AWRQ + + LW Sbjct: 185 QPLV-----------------------------------------DAWRQSNPNIVALWW 203 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR--- 577 + A + I K + + + L++ LPSGR L Y +G N+ Sbjct: 204 DFDTAIKNAI---KMHCSTASHGIKFTWR---SGMLLITLPSGRKLTYVKPRIGENKFGG 257 Query: 578 ---SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT--VHDE 631 +Y T++ R YG K EN+VQA+SRD+L MNA K + VHDE Sbjct: 258 ESVTYEGIGATKKWERLEIYGPKFVENVVQAISRDLL----MNAMKTLSHCFICGHVHDE 313 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ E +++ + +L M P W + L+A+GY ++ Y+K Sbjct: 314 LIIEC--SEKVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355 >gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 300 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 122/233 (52%), Gaps = 47/233 (20%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 L D+ + T +R L + L P+ + ++ + R +AS ++ K L+ + DGRLRGTLQ Sbjct: 13 LPDMQQHTVERCL--DDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQ 70 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRS 366 F GASRTGRW+G +F P NLPRP+ S + I + + D D + + S +RS Sbjct: 71 FNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFD-DVMALTSSALRS 129 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------------------ 402 C+IA KKLVVADL+ IE RVLAW+AGE KL+AF Sbjct: 130 CLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHSGEAITHGAL 189 Query: 403 ----------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 G+D+Y YA SF +AP VTK QR IGKV ELAL Sbjct: 190 RGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELAL 242 >gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e] gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e] Length = 306 Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 130/285 (45%), Gaps = 45/285 (15%) Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW--MQE-NHPEH 492 EL LGY+GG AF A GL+L A + W W +QE P H Sbjct: 22 ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 81 Query: 493 AIE---------DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN------GKA 537 E D + C+ +K+ WR+ H W +L + N A Sbjct: 82 PGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAGA 141 Query: 538 IIARKRRDVPLVYMKKDKNN---------LILMLPSGRSLVYRDVG-------NNRSYLN 581 + R ++ + ++ L + LPSGR L Y +G + +N Sbjct: 142 HLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRIN 201 Query: 582 TTTR-------QLTRE----YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 T R QLTR+ YT+GGK ENIVQA+ RD+LA M+N GY IVL+VHD Sbjct: 202 TNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVHD 261 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+VCETPDT ++ + L LM + P WA G PL AEG E KRY K Sbjct: 262 ELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306 >gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 223 Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP+ LK L++ Sbjct: 10 LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68 Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 ++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL ++ + ++S K Sbjct: 69 PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128 Query: 123 M--EEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE--P 177 +EGK LI FCK R H E W F Y D+ REI++ L Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALA 204 ++ E LW LDQ IN RG C+DV LA Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELA 215 >gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 284 Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 97/276 (35%), Positives = 137/276 (49%), Gaps = 15/276 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L SQK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHIT- 239 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 GL + +L WL E GL + +L + T Q L Sbjct: 240 GL-ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL 274 >gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638] gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638] gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68] Length = 231 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 130/240 (54%), Gaps = 23/240 (9%) Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI----EDLFIGTA 502 AF A L+L+ A+ N + +A++ W E+ + E +FI A Sbjct: 3 AFITFALVYSLDLDELANAALPNIPRDVIREAKS---WYYESVKRKSTYGLSERVFI--A 57 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLIL 560 C+ +K+ WR+ H + W EL E+T+ + IA ++ + Y+K +D L + Sbjct: 58 CDSLKRLWRRAHPATCDFWYEL----ERTV---RTAIATPQKTLYCGYLKIRRDGAWLRI 110 Query: 561 MLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 LPSGR++ Y N +Y+ N+ +R+ R TYGGKL EN+ QA +RD+LA M Sbjct: 111 QLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMP 170 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY IVLTVHDEI+ E PD+ +++A + L+ + P WA +PL A G+ES RYRK Sbjct: 171 LIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230 >gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7] gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11] Length = 267 Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 114/223 (51%), Gaps = 34/223 (15%) Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN-------GKAI 538 +++ P + I D + C+ +K+ WR+ H + W +L + N G I Sbjct: 46 KDDRPSY-ILDKKVWRTCDAIKRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANI 104 Query: 539 IARKRRDVPLVYMKKDKNN--------LILMLPSGRSLVYRDVG-------NNRSYLNTT 583 + R + + + ++ L + LPSGR L Y +G + +NT Sbjct: 105 RSNGERAIRIWRTTEIDSSGRNIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTN 164 Query: 584 TR-------QLTRE----YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 R QLTR+ YT+GGK ENIVQA RD+LA M+NA GY IVL+VHDE+ Sbjct: 165 VRIKYQGENQLTRQWTTLYTHGGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDEL 224 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VCETPDT ++ + L LM + P WA+G PL AEG E KRY K Sbjct: 225 VCETPDTPDYTVAELEKLMCALPEWAEGFPLVAEGAELKRYAK 267 >gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] Length = 290 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 127/246 (51%), Gaps = 19/246 (7%) Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSA----PEEWEDAENFCRWMQENH-PEHAIE 495 Y+ G + +TGL L + ++ T +A P ++A +W + NH P + Sbjct: 52 YRSGDDRRRYARRSTGLTLPSA--VIDTPNACAASPMPIQEAVEALQWTKANHRPTFGLS 109 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I G A + + Y + Sbjct: 110 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY---SR 163 Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 164 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 223 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG++ Sbjct: 224 LAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 283 Query: 670 SKRYRK 675 + RYRK Sbjct: 284 THRYRK 289 >gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 199 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 100/180 (55%), Gaps = 11/180 (6%) Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 AC+ K+AWR H ++ W L A I G A + + Y + L L Sbjct: 24 ACDVFKRAWRNAHPAIAAFWQALQCAVTDAI--GHPETAHTCCGITVQY---SRAWLRLR 78 Query: 562 LPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA M Sbjct: 79 LPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMP 138 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E+ RYRK Sbjct: 139 AIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 198 >gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C] Length = 686 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 173/681 (25%), Positives = 267/681 (39%), Gaps = 157/681 (23%) Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 C + AR LP +L +AL+ +++K ++GK+LI + C+ + + +P R W Sbjct: 62 CDMAKARRFSLPGSLDTAAKALR-TAEKDKKGKQLIGKLCRPVSAT----KARPEPR--W 114 Query: 155 RLFG---------EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 L+ YC DV + + ++ E+E W DQ IN RG VDV Sbjct: 115 TLYTAPQDYADLYRYCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLD 174 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET------GLHLEDLTET-- 257 IV + EL ++T G V S + KL FL T L E + ET Sbjct: 175 NALDIVGQTTRRFTMELAAITNGAVGSVSEVAKLTD--FLATVGCRMHNLKSETVAETLE 232 Query: 258 ------TCQRVL--------SSNKKLTPQAIQVFNN-RMRAS-----------RSAVLKL 291 T +R+L ++ KKL Q+ ++ R+R + ++L Sbjct: 233 RDDLNPTARRILEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAGTGRWSAGGVQL 292 Query: 292 NTLV------EAMNSDGRLRGT---LQFLGASRTGRWSGCVFPPQN---------LPRPS 333 L + N GR+ G ++ +GA+ G N Sbjct: 293 QNLTSKGPKSKTCNGCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKD 352 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 H LD II DP+ ++S C+R IA+ GKK V D + IEA VLA +A Sbjct: 353 LKHRNLDLIIDIWG-------DPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALA 405 Query: 394 GEQWKLKAFETGEDLYVTTYAR----SFNVAPAQVTKDQ------RAIGKVMELALGYQG 443 +W+++ F T +Y + ++ F A K++ +++GKV ELA GY G Sbjct: 406 RCEWRIEVFRTHGKIYEMSASKISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGG 465 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A+ K A E +ED + A++ +G Sbjct: 466 WIGAW------------------KAFGAEEHFED-------------DDAMKKAILG--- 491 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIE--------NGKAIIA----RKRRDVPLVYM 551 WR + E W ++ T + G I+A K V + Sbjct: 492 ------WRDASPEIVEFWGGQYRRDPYTRKWVREYYGLEGAVIMAILNPGKCYAVGDITY 545 Query: 552 KKDKNNLILMLPSGRSLVYR-------DVGNNRSY------LNTTTRQ----LTREYTYG 594 + L LPSGR L Y D Y NT +++ R TYG Sbjct: 546 AVFDDVLYCRLPSGRFLQYHQPKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYG 605 Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654 G+L EN+ QA + D+ A M GY +V+ HDE++ E P D + + LMT Sbjct: 606 GRLAENVTQAAAADVQAYAMKQCENNGYPVVMHTHDELIAEVP-GDFGSVEEMAALMTGR 664 Query: 655 PSWAKGLPLKAEGYESKRYRK 675 W + P++A G+E RY+K Sbjct: 665 EPWREWWPIRAAGWEDDRYQK 685 >gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 205 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 111/207 (53%), Gaps = 13/207 (6%) Query: 476 EDAENFCRWMQENH-PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 ++A +W + NH P + D AC+ K+AWR H ++ W L A I Sbjct: 4 QEAVEALQWTKANHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAI-- 60 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLT 588 G A + + Y + L L LPSGR L Y D SY+ T TR+ T Sbjct: 61 GHPETAHTCCGITVQY---SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWT 117 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 R TYGGKL ENI QAVSRD+LA M AGY IVLTVHDEI+ E D FNA+ L Sbjct: 118 RITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLA 177 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYRK 675 LM + P WA+GLPL AEG+++ RYRK Sbjct: 178 ALMATPPPWAQGLPLAAEGFQTHRYRK 204 >gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T] Length = 714 Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 123/426 (28%), Positives = 184/426 (43%), Gaps = 79/426 (18%) Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 C + AR LP +L A +ALK +S K ++GK+LI + C+ + + +P R W Sbjct: 152 CDMAKARRFSLPGSLDAAAQALK-TSPKDKKGKQLINKLCRPVSAT----KARPLPR--W 204 Query: 155 RLFGE---------YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 L+ YC DV + ++ E+E W DQ IN RG VDV Sbjct: 205 TLYTAPQDYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLD 264 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265 IVD + EL ++T G V S + K+ +L G + +LT + L Sbjct: 265 NALDIVDQTTRRFTMELAAITNGAVGSVSEVAKMTDFL-AGLGCRMHNLTADSVSEALER 323 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + L P A +V R + + V KL +L ++SDGRLR F GA TGRWS Sbjct: 324 D-DLNPTARRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQ 381 Query: 326 PQNL----PR--------------------------PSRSHEE--------LDQI----- 342 QNL P+ P E +D + Sbjct: 382 LQNLTSKGPKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALK 441 Query: 343 -ITH----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +TH L +I D P+ ++S C+R IA+ GKK V D + IEA VLA +A +W Sbjct: 442 DLTHRNLDLIIAIWGD--PITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEW 499 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVT--KDQ--------RAIGKVMELALGYQGGAKA 447 +L+ F T +Y + ++ V ++ K+Q +++GKV ELA GY G A Sbjct: 500 RLEVFRTHGKIYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGA 559 Query: 448 FQKMAS 453 ++ + Sbjct: 560 WKAFGA 565 >gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] Length = 341 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 152/316 (48%), Gaps = 34/316 (10%) Query: 6 IDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 ID ET S +D+ K G+ KYAE + ++LFA D V ++D V+P + +A+ + Sbjct: 9 IDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEILDAIVS 68 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIH------------------RWICTLVLARSNGL 105 DV A N+ FER L + P W CT++ + GL Sbjct: 69 DDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWSAYMGL 128 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYC 161 P +L+ VG L L QKM+EGK+LI F CK RN P H E W +F Y Sbjct: 129 PLSLEGVGAVLGLKDQKMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKWTVFKSYN 188 Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 K DV V I ++L P+ E + LDQ INDRG VD+ + N I ER+K Sbjct: 189 KRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVE--NAIAFDERSKAT 246 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFN 278 E L + + + ++K+WL + G+ +E L ++V++ K P+ + QV + Sbjct: 247 ITDEMLGLTDIDNPNSVSQMKSWLS-DQGIEVESLG----KKVVAEMIKDAPEDLAQVLS 301 Query: 279 NRMRASRSAVLKLNTL 294 R + ++S+V ++ + Sbjct: 302 LRQQLAKSSVNRVGEI 317 >gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7] gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11] Length = 237 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 13/236 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EAL-----ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L A+ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 GEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTR 169 E L + S K + GK LI RF K R + H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 E++K++ + E E + +LDQ INDRG+ VDVALA + + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQ 236 >gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13] Length = 237 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 13/236 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EAL-----ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L A+ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 GEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTR 169 E L + S K + GK LI RF K R + H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 E++K++ + E E + +LDQ INDRG+ VDVALA + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQ 236 >gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 119/271 (43%), Gaps = 60/271 (22%) Query: 417 FNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPE 473 F V ++TK R GK+ ELALGY G A M + GL+ + LV T Sbjct: 2 FGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMGALAMGLSEDELPGLVST----- 56 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 WR + +++ W ++ +A Sbjct: 57 ------------------------------------WRNANPHITQFWWDVDEAAV---- 76 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTT------- 584 +A+ RK V L+ + L MLPSGR L Y +G N+ + T Sbjct: 77 --RAVRERKETQVGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 ++ R TYG KL ENIVQ SRDILAE MM KAG+ IV VHDE V E P+ + Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEGKS-SV 193 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +M PSW GLPL+A+GYE + Y+K Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224 >gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 181 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 5/176 (2%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK L++ Sbjct: 5 LFCDLETYSDIPIN-CGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63 Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 ++ V HN F+ +L N+D+P+ R TLV A ++GLP AL ++ + ++S K Sbjct: 64 PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123 Query: 123 M--EEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRL 175 +EGK LI FCK R H E W F Y D+ REI++ L Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHL 179 >gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 132 Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats. Identities = 71/131 (54%), Positives = 82/131 (62%), Gaps = 6/131 (4%) Query: 551 MKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQA 604 M+ + L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QA Sbjct: 1 MQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQA 60 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664 VSRD+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL Sbjct: 61 VSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLA 120 Query: 665 AEGYESKRYRK 675 AEG+E+ RYRK Sbjct: 121 AEGFETHRYRK 131 >gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 169 Score = 110 bits (276), Expect = 7e-22, Method: Composition-based stats. Identities = 69/124 (55%), Positives = 79/124 (63%), Gaps = 6/124 (4%) Query: 558 LILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILA 611 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA Sbjct: 45 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 104 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671 M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+++ Sbjct: 105 ACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTH 164 Query: 672 RYRK 675 RYRK Sbjct: 165 RYRK 168 >gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] Length = 154 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 70/124 (56%), Positives = 79/124 (63%), Gaps = 6/124 (4%) Query: 558 LILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILA 611 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA Sbjct: 30 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLA 89 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671 M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E+ Sbjct: 90 ACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 149 Query: 672 RYRK 675 RYRK Sbjct: 150 RYRK 153 >gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 240 Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 121/286 (42%), Gaps = 59/286 (20%) Query: 402 FETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 F+ GEDLY T + F V P + V + R GK+ LA GY G A + M + Sbjct: 1 FKNGEDLYCATASAMFGV-PVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGA----- 54 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +K + +E + + AWR + + Sbjct: 55 -------LKMGLSKDE----------------------------LQPIVDAWRAANPNIV 79 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 +LW+++ A + I G + R + +K L + LPSGR L Y +G N Sbjct: 80 QLWHDVDNAATRAISTGSPVTLRN------LGFEKKSGMLFINLPSGRRLAYVKPGIGMN 133 Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R + T R+ + TYGGKL ENIVQA +RD+L E + AG IV+ +H Sbjct: 134 RFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIH 193 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE+V + P + + L+ P GLP+ A GYE Y+K Sbjct: 194 DEVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239 >gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon] gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon] Length = 160 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 68/133 (51%), Positives = 83/133 (62%), Gaps = 6/133 (4%) Query: 549 VYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNT--TTRQLTREYTYGGKLTENIV 602 + M+ + L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI Sbjct: 27 ITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENIT 86 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662 QAVSRD+LA M AGY IVLTVHDE++ E D FNA+ L LM + P WA+GLP Sbjct: 87 QAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLP 146 Query: 663 LKAEGYESKRYRK 675 L AEG+++ RYRK Sbjct: 147 LAAEGFQTHRYRK 159 >gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46] Length = 225 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 115/271 (42%), Gaps = 60/271 (22%) Query: 417 FNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPE 473 FNV +TK R GKV ELALGYQGGA A + M + G+ N LV + Sbjct: 2 FNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVDS----- 56 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 WR + + W +A T++ Sbjct: 57 ------------------------------------WRNANPNIVNFWKACQEAAINTVK 80 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------SYLNTT-T 584 + K R YMKK L++ LPSGR+L Y VG N ++ Sbjct: 81 SRKTHHTHGLR----FYMKK--GFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ E P Sbjct: 135 RKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSN-GL 193 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +M WAKGL L ++G+ S Y K Sbjct: 194 KEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224 >gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2] Length = 324 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/77 (57%), Positives = 54/77 (70%) Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENI QA +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N WA Sbjct: 247 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 306 Query: 659 KGLPLKAEGYESKRYRK 675 LPL A G+E+ RYRK Sbjct: 307 WDLPLSANGFETYRYRK 323 >gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023] Length = 155 Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 8/125 (6%) Query: 558 LILMLPSGRSLVY-------RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 L + LPSGR+L Y G+ Y T + ++YTYGGKL ENIVQA++RD L Sbjct: 31 LFIKLPSGRNLAYFRAKLVPGKYGHQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCL 90 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 A + AG V+ VHDE + E P++ E + L ++ SWA GLPL+ +G+ S Sbjct: 91 AVSLRRIEDAGISTVMHVHDEAITEVPES-ESSVDKLNAILAEPISWAPGLPLQGDGFSS 149 Query: 671 KRYRK 675 Y K Sbjct: 150 DFYMK 154 >gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 100 Score = 90.5 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 44/91 (48%), Positives = 55/91 (60%) Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 R + R +YGGKL ENIVQAV+RD+ M + G+ IV+ VHDEIV + P F Sbjct: 9 RLVVRLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGFTV 68 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM + P WA GLPL A+GYE YRK Sbjct: 69 ADACVLMATLPDWAAGLPLDADGYECDYYRK 99 >gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] Length = 222 Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 114/270 (42%), Gaps = 61/270 (22%) Query: 417 FNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 FNVA + V R GK+ ELALGY G A + M + Sbjct: 2 FNVAVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGAL-------------------- 41 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 E IE+ + + AWRQ +S +++LW ++ +A + + Sbjct: 42 ----------------EMGIEE----EELQPLVTAWRQSNSNITKLWWDVDRAVKVCV-- 79 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRSYLNTT-TR 585 K + + +Y L ++LPSGR L Y G + +Y T+ Sbjct: 80 -KQKTPTETHGIKFIY---QSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGTK 135 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R +YG K ENIV A+SRDIL M T IV VHDEI+ E F+A Sbjct: 136 KWERIESYGPKFVENIVHAISRDILYHAMQ--TLKNCSIVAHVHDEIIIEADMRMSFSA- 192 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + M PSWA GL L A+GYE + Y+K Sbjct: 193 -ICEQMARTPSWANGLLLSADGYECQFYQK 221 >gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] Length = 239 Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 121/289 (41%), Gaps = 63/289 (21%) Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TT 455 +K F+ D+Y + + F+V + V R GK+ ELALGY G A + + T Sbjct: 1 MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIGALDT 60 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 GL+ + LV + WR + Sbjct: 61 GLSEDELQPLVDS-----------------------------------------WRASNP 79 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV 573 + + W ++ + + I K A + + VY L ++LPSGR L Y + Sbjct: 80 NIVQFWWDVDRCVKTAI---KQRTATETHGIRFVY---QNGILFIVLPSGRRLCYVKPKI 133 Query: 574 GNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 G N+ +Y T ++ R +YG K ENIVQA+SRDIL M + IV Sbjct: 134 GENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMRTLSHC--FIVG 191 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ ETP + A + + P W GL L+A+GYE+ Y+K Sbjct: 192 HVHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238 >gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 169 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL+N ++ A N+ FER L + W C+ V + + GLP +L+ VG L L Sbjct: 61 EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEY 160 QK+ GKEL+ F CK RN P H + W+ F +Y Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQY 166 >gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium 3_1_46FAA] gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium 3_1_46FAA] Length = 164 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 6/136 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET S ++L K G+ +YAE D V+LF + D V++ D V +P+ + Sbjct: 20 LLNLEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVM 79 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLPSALKAVGE 114 ALE+ VT A N+ FER + + + W C++V + GLP +L+ VG Sbjct: 80 SALEDEAVTKWAFNAQFERICISRMLGYEAGTYLVPASWKCSMVWSAYMGLPLSLEGVGA 139 Query: 115 ALKLSSQKMEEGKELI 130 L L QK+ EGK+LI Sbjct: 140 VLGLEKQKLTEGKDLI 155 >gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] Length = 93 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/95 (46%), Positives = 55/95 (57%), Gaps = 6/95 (6%) Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 T ++ R TYG KL ENIVQA SRD+LAE M G +V+ +HDE V + P F Sbjct: 2 TVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAP----F 57 Query: 643 NASM--LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 N S+ + LMT P WA GL L A G+ S Y+K Sbjct: 58 NRSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 92 >gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] Length = 944 Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 93/414 (22%), Positives = 174/414 (42%), Gaps = 46/414 (11%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++ + E D+ VAHN F+ VLK DI + + ++A P Sbjct: 419 EIFRPFFEKEDLLKVAHNLKFDYKVLK---QYDITVKGAMFDTMIAHYLLNPDG------ 469 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKP--NHREA-WRLFGEYCKGDVTVTREI 171 M+ E+ + + + K N R+A R +Y D VT ++ Sbjct: 470 -----RHGMDYLSEVYLNYKPVSIETIIGKKGKKQGNFRDADLRTQTDYAAEDADVTFQL 524 Query: 172 FKRLEPLSSKE--QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 ++ P KE +EL+Y +++ L L ++ ++ LD++ L Sbjct: 525 YELFAPQLKKENLEELFY----------NIEMPLMEVLAKM-ELSGISLDEKW--LAQES 571 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 V L+ L+ +F +G + +L +L P+A + + S + Sbjct: 572 VDLENDLKGLEAKIFELSGEEFNMNSPRQLGEILFEKMQLDPKAKKTKTGQYATSEDVLQ 631 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 KL++ E ++ L++ + P Q +R H Q Sbjct: 632 KLSSKHEI------IKHILEYRTYQKLKSTYVDALPSQIDKDDNRVHTNFSQTTAATGRL 685 Query: 350 ITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + +P+ P++ + +R ++ EGKK++ AD + IE R++A ++GE+ +KAF+ Sbjct: 686 ASVNPNLQNIPIRTLRGQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQD 745 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 GED++ +T A+ F + A+V+K QR+ K + + Y GA A +A TGL+ Sbjct: 746 GEDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGIIYGQGAFA---LAEQTGLS 796 >gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 180 Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 21/177 (11%) Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 +WR + ++ W ++ +A + TI I + R + Y L + LPSGR L Sbjct: 14 SWRNSNPMITAFWWDIDRAVKTTITQR---IQTEVRGICFFY---KSGMLFIKLPSGRLL 67 Query: 569 VYRD--VGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 Y +G N+ +Y +T++ R +YG K ENIVQAVSRDIL M Sbjct: 68 SYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVSRDILCYAMKTLRH 127 Query: 620 AGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E +PD D +++ M +P W + L+A+GYE+ Y+K Sbjct: 128 CF--IVGHVHDELIIECSPDVD---TNVICKQMGRSPDWMPDILLRADGYETNFYKK 179 >gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] Length = 874 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 116/270 (42%), Gaps = 37/270 (13%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD+ V + T+L++EL +L G + R ++L LF E GL + T Sbjct: 491 GIGVDLRSLAAFGAEVATDLTRLEKELHTLA-GHPFNPRSSQQLGEILFTEMGLTPKGKT 549 Query: 256 E----TTCQRVLSSNKKLTPQAIQVFNNR-MRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 +T Q L P ++ R + RS L + L + ++DGR+ TL Sbjct: 550 PGGAASTSQDALERLAGSNPLVDRILEFRKLEKLRSTYL--DPLPKLADADGRIHTTLNN 607 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + A+ TGR S S+ L I P + +R C +A Sbjct: 608 M-ATATGRLSS-------------SNPNLQNIPIRGP------------LGRRMRECFVA 641 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 GK LV AD + IE RVLA ++GE L AF G D++ T + F+ A++ D+R Sbjct: 642 GPGKTLVAADYSQIELRVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERR 701 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLN 460 K + L Y G QK++ G+ L+ Sbjct: 702 QAKTINFGLLYGMGP---QKLSRDLGIKLD 728 >gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002] gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002] Length = 913 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + ++DP+ LQ I +R IA G KLV AD + Sbjct: 635 PRTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQ 693 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ ++AF GED++ T + FNV P +V+ DQR + KV+ L Y Sbjct: 694 IELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINFGLIY-- 751 Query: 444 GAKAFQKMASTTGL 457 G AF +AS G+ Sbjct: 752 GMSAF-GLASNLGI 764 >gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] Length = 93 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 2/93 (2%) Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 T ++ R TYG KL ENIVQA SRD+LA M AG +V+ +HDE V + P TD Sbjct: 2 TVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAP-TDR- 59 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +MT P WA GL L A G+ Y+K Sbjct: 60 SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 92 >gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868] gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868] gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM] gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Riemerella anatipestifer RA-GD] Length = 935 Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 74/316 (23%), Positives = 141/316 (44%), Gaps = 27/316 (8%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +Y D +T ++++ P KE+ + + Y +++ L L ++ ++ L Sbjct: 503 QYAAEDADITFQLYEIFSPQLKKEE--------VEEVFYKIEMPLVKVLAKM-ELTGVAL 553 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 D+E L +S + L+ L+ +F + G + +L KL P+A + Sbjct: 554 DEEW--LKDESISLEQDLKILEGQIFEQAGEEFNINSPKQLGDILFEKLKLDPKAKKTKT 611 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + S + KL+ E ++ L++ + P Q P R H Sbjct: 612 GQYSTSEDVLQKLSHKHEI------IKLILEYRQLQKLKSTYVDALPNQISPIDGRVHTS 665 Query: 339 LDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + +++P+ LQ I VR +A +G K+V AD + IE R++A + Sbjct: 666 FAQTVAATGRLASNNPN-LQNIPIRTERGQQVRGAFVAPKGSKIVSADYSQIELRLIAEI 724 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +GE+ +KAF+ G+D++ +T ++ F+V +V+K QR+ K + + Y G AF +A Sbjct: 725 SGEETMIKAFKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGIIY--GQSAF-ALA 781 Query: 453 STTGLNLNTFAHLVKT 468 TGL+ L+ + Sbjct: 782 DQTGLSRTDAKQLIDS 797 >gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] Length = 949 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 96/413 (23%), Positives = 173/413 (41%), Gaps = 44/413 (10%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 ++ +E E DV+ VAHN F+ +L+ F+L + + L +G + + Sbjct: 424 EIFREFFEKEDVSKVAHNLKFDYKILQQYGFSLKGLLFDTMIAHYLLNPDG-KHVIDYLS 482 Query: 114 EA-LKLSSQKMEEGKELIARFCKGE-THECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 E L +E LI + K + T L + N Y D +T ++ Sbjct: 483 EIYLNYKPVALES---LIGKKGKNQLTFRSLTVEEQTN----------YAAEDADITWQL 529 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE-LESLTYGLV 230 ++ P KE + D Y V++ L L ++ ++E LD++ L + L Sbjct: 530 YEVFAPQLKKE--------NLEDLFYKVEMPLLRVLAKM-ELEGVALDEKWLAQESIDLE 580 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + R LE +F + + +L KL P+A + + S + K Sbjct: 581 NDLRGLE---AKIFELADVEFNVNSPRQLGEILFEKLKLDPKAKKTKTGQYATSEDVLQK 637 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L+ ++ L++ + P Q +R H Q Sbjct: 638 LSA------KHDIIKYILEYRTYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAATGRLA 691 Query: 351 TSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + +P+ P++ + +R +A+EGKK++ AD + IE R++A ++ E+ + AF+ G Sbjct: 692 SVNPNLQNIPIRTLRGQQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENMILAFQNG 751 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ED++V+T AR F++ +VTK QR K + + Y GA A +A TGL+ Sbjct: 752 EDIHVSTAARLFDIPLEEVTKTQRGQAKTVNFGIIYGQGAFA---LAEQTGLS 801 >gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 310 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 142/365 (38%), Gaps = 98/365 (26%) Query: 274 IQVFNNRMRA-SRSAVLKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGC-VFPPQ 327 + +F R RA S AV + LV+A+N +D +L L + GA TGR+ G Q Sbjct: 9 LPIFEARERAKSNQAVSRAKKLVQAVNGRPNNDNKLVVPLVYYGA-HTGRYGGNEGLNLQ 67 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 NL R S R + A G+ + VAD + IEAR Sbjct: 68 NLQRGSEH-----------------------------RKALTAPFGQLVYVADSSNIEAR 98 Query: 388 VLAWMAGEQWKLKAFETGEDLYVT--TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 ++AW A E L F+ G D Y T T F V Q + +R +GKV L L Y GA Sbjct: 99 IVAWFAQETALLNQFKNGIDTYATLATDIYGFPVT-KQTHQLERNVGKVARLGLQYGMGA 157 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + F + + + + P W E E+ Sbjct: 158 RTFHRTMESGPMGI-----------PPMPWAFPE-----------------------IEK 183 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + K +R+ H + + W +Q ++ I R+D + + L LP+G Sbjct: 184 IVKTYRRTHPMIKKCWEIGNQIIQKMI----------RKDTLETWRCLTVRHQCLELPNG 233 Query: 566 RSLVYRDVGNNR--------------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 L + ++ N SY + +++L + YGGKL ENI QA++ + Sbjct: 234 MYLQFPNLRNKEIQTAQGPQYEVVYDSY-DYKSKKLVEKRLYGGKLLENIAQALAGLAMK 292 Query: 612 EGMMN 616 E M++ Sbjct: 293 EMMLD 297 >gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu] Length = 917 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IAS G ++V AD + Sbjct: 639 PETGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHQIVSADYSQ 697 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +VT DQR I KV+ L Y Sbjct: 698 IELRIMAHISGDASLLRAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVINFGLIY-- 755 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 756 GMSAF-GLASNLGIT 769 >gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160] gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160] Length = 913 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G KLV AD + IE R++A ++G++ ++AF GED++ T + FNV P + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLE 733 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V+ DQR + KV+ L Y G AF +AS G+ Sbjct: 734 VSSDQRRVAKVINFGLIY--GMSAF-GLASNLGIT 765 >gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D] gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D] Length = 937 Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 13/176 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q ++DP+ LQ I +R IA EG +V AD + Sbjct: 659 PRTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQ 717 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ ++AF G+D++ T A FNV P +VT DQR + KV+ L Y Sbjct: 718 IELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIY-- 775 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA-IEDLF 498 G AF +AS G+ + + A + A N+ +++ EH +E +F Sbjct: 776 GMSAF-GLASNLGIGRDAAKLYIDRYFA--RYPGAANYMEETRQSAREHGYVETVF 828 >gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] Length = 861 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 107/456 (23%), Positives = 169/456 (37%), Gaps = 119/456 (26%) Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + RG +D A H +V E +L + + G + R ++L LF GL Sbjct: 475 MQKRGIRIDAARFHDFLGMVQAELDRLTRTIHE-QAGEEFNIRSSQQLAEVLFSRLGLAC 533 Query: 252 EDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 + T ++T VL P V RM + L + + + +GR+ T Sbjct: 534 KQKTPGGAQSTSSSVLEGLAAEHPIVADVLEFRMYEKLRSTY-LEPMPQLADKNGRIHTT 592 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 L A+ TGR S QN+P I P +RSC Sbjct: 593 FNQL-ATATGRLSSSNPNLQNIP-------------------IRGALGP------RMRSC 626 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 +AS G +LV AD + IE RVLA M+G+Q +AF G+D++ T F+ +V+ D Sbjct: 627 FVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGILFDT--TEVSAD 684 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 +R K + L Y G QK+ G++L ++A+ F Sbjct: 685 ERRKAKTINFGLLYGMGP---QKLGRELGISL----------------KEAKEFI----- 720 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + K SRV E + E+ +A +++ + R+R Sbjct: 721 --------------------AVYFSKLSRVREFYEEI-EAGAKSLGYVTTLAGRRR---- 755 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 MLP N+R NT Q R +VQ + Sbjct: 756 -------------MLPE---------INSR---NTNMAQQARRMA-----INTVVQGSAA 785 Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETP 637 DI+ + M+ K+ G ++L +HDE++ E P Sbjct: 786 DIIKKAMLEVDKSPVIGELGASLILQIHDELLLEAP 821 >gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 143 Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WR 155 +V A + GLP +LK VG+ L L +QKM+EGK+LI FC + + R P+ A W+ Sbjct: 1 MVWAATLGLPLSLKDVGKVLNLDAQKMDEGKDLIKHFCVPDDNS---QRRLPSSDPAGWK 57 Query: 156 LFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 LF Y DV V I ++L P+ E + +DQ INDRG +D LA + I + Sbjct: 58 LFQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTLAASAITIDEK 117 Query: 214 ERTK 217 R + Sbjct: 118 HRAQ 121 >gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] Length = 582 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 5/128 (3%) Query: 330 PRPSRSHEELDQIITHLPTS--ITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEA 386 P+ R H Q +PT ++P+ QI D R C +A EG LV+AD + IE Sbjct: 309 PKTGRIHASFLQ--CRVPTGRLACTNPNVQQIPHEDEFRRCFVAGEGNVLVIADYSQIEL 366 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA ++G+ ++AF GEDL+ T A F V +VTK+QR+ K + L Y G + Sbjct: 367 RILAEVSGDPGFVEAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINFGLAYGRGPR 426 Query: 447 AFQKMAST 454 + T Sbjct: 427 SLAAQLGT 434 >gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M] gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M] Length = 913 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G KLV AD + IE R++A ++G++ L+AF GED++ T A F+V P + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSEGEDIHRATAAEIFSVTPLE 733 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V+ DQR + KV+ L Y G +F +AS G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGI 764 >gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001] gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001] Length = 913 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G KLV AD + IE R++A ++G++ L+AF GED++ T A F+V P + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V+ DQR + KV+ L Y G +F +AS G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGIT 765 >gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815] gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815] Length = 915 Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 3/94 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G KLV AD + IE R++A ++G++ L+AF+ GED++ T + F+V P + Sbjct: 676 IREAFIAPPGHKLVSADYSQIELRIMAHISGDEALLRAFKQGEDIHRATASEVFSVTPLE 735 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V+ DQR I KV+ L Y G +F +AS G+ Sbjct: 736 VSNDQRRIAKVINFGLIY--GMSSF-GLASNLGI 766 >gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003] gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003] Length = 913 Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G KLV AD + IE R++A ++G++ L+AF GED++ T A F+V P + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V+ DQR + KV+ L Y G +F +AS G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGI 764 >gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J] gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J] gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] Length = 937 Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q ++DP+ LQ I +R IA EG +V AD + Sbjct: 659 PRTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQ 717 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ ++AF G+D++ T A FNV P +VT DQR + KV+ L Y Sbjct: 718 IELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIY-- 775 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 776 GMSAF-GLASNLGIG 789 >gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383] gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383] Length = 917 Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IAS G ++V AD + Sbjct: 639 PSTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 698 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 756 GMSAF-GLASNLGIT 769 >gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] Length = 917 Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IAS G ++V AD + Sbjct: 639 PTTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 698 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 756 GMSAF-GLASNLGIT 769 >gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184] gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184] Length = 920 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IAS G ++V AD + Sbjct: 642 PTTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 701 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 758 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 759 GMSAF-GLASNLGIT 772 >gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49] Length = 641 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IAS G ++V AD + Sbjct: 363 PATGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 421 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 422 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIY-- 479 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 480 GMSAF-GLASNLGIT 493 >gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5] gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5] Length = 917 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IAS G ++V AD + Sbjct: 639 PATGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 698 IELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 756 GMSAF-GLASNLGIT 769 >gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6] gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6] Length = 917 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IAS G ++V AD + Sbjct: 639 PATGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 698 IELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 756 GMSAF-GLASNLGIT 769 >gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD] gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD] Length = 917 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IAS G ++V AD + Sbjct: 639 PATGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIASPGHRIVSADYSQ 697 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 698 IELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 756 GMSAF-GLASNLGIT 769 >gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] Length = 917 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IAS G ++V AD + IE R++A ++G+ L+AF GED++ T A F V P + Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V DQR I KV+ L Y G AF +AS G+ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAF-GLASNLGIT 769 >gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1] gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1] Length = 917 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA+ G K+V AD + IE R++A ++G++ L+AF GED++ T A F V P + Sbjct: 678 IREAFIAAPGCKIVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEVFGVTPLE 737 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V+ DQR I KV+ L Y G AF +AS G+ Sbjct: 738 VSTDQRRIAKVINFGLIY--GMSAF-GLASNLGIT 769 >gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] Length = 874 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 29/170 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L M DGR+R T L A+ TGR S QN+P Sbjct: 584 LEPLPRLMGGDGRIRTTFNQL-ATATGRLSSSNPNLQNIPVRG----------------- 625 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + +R+C A EGKKL+ AD + IE RVLA ++ ++ L AF G D++ Sbjct: 626 --------ALGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHA 677 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 T + F+ P+++T DQR K + L Y G QK+A + L+ Sbjct: 678 RTASLLFDAPPSEITPDQRRNAKTINFGLIYGMGP---QKLAQELKIPLS 724 >gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN] gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN] Length = 913 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G KLV AD + IE R++A ++G++ L+AF GED++ T A F+V P + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V+ DQR + KV+ L Y G +F +A+ G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLAANLGIT 765 >gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4] gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4] Length = 917 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IAS G ++V AD + IE R++A ++G+ L+AF GED++ T A F V P + Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAHGEDIHRATAAEVFGVTPLE 737 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V DQR I KV+ L Y G AF +AS G+ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAF-GLASNLGIT 769 >gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 921 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 26/156 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L+ L M+ +GR+ T A+ TGR S QN+P + Sbjct: 631 LDPLPRLMDGNGRIHTTFN-QKATATGRLSSSNPNLQNIP-------------------V 670 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 D + +R+C IA+ G LV AD + +E RVLA M+ ++ L+AF GED++ Sbjct: 671 RGD------LGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGEDIHA 724 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 T A +++AP QV+ DQR K + L Y GA+ Sbjct: 725 RTAALVYDLAPDQVSPDQRRNAKTINFGLIYGMGAQ 760 >gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1] gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1] Length = 913 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G KLV AD + IE R++A ++G++ L++F GED++ T A F+V P + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V+ DQR + KV+ L Y G +F +AS G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGIT 765 >gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M] gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M] Length = 920 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA+ G ++V AD + Sbjct: 642 PSTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 701 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIY-- 758 Query: 444 GAKAFQKMASTTGL 457 G AF +AS G+ Sbjct: 759 GMSAF-GLASNLGI 771 >gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1] gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1] Length = 920 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA+ G ++V AD + Sbjct: 642 PSTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 701 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIY-- 758 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 759 GMSAF-GLASNLGIT 772 >gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B] gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B] Length = 878 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 11/177 (6%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R C +A+ GKKLV AD + IE RVLA ++GE L AFE G D++ T A F+ A A Sbjct: 639 MRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEAD 698 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 + D+R K + L Y G QK++ G+ L+ ++ E F + Sbjct: 699 IRPDERRQAKTINFGLLYGMGP---QKLSRDLGIKLDAAKAFIEKYF--ERLSGLSTFYQ 753 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL-HQAFEQTIENGKAII 539 + + F+ T R ++ + HS S+L ++ QA ++ G A I Sbjct: 754 GIVDTAKAQG----FVTTLAGR-RRLLPEIHSANSQLASQARRQAINTVVQGGAADI 805 >gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] Length = 917 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA+ G ++V AD + Sbjct: 639 PSTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQ 697 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 698 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIY-- 755 Query: 444 GAKAFQKMASTTGL 457 G AF +AS G+ Sbjct: 756 GMSAF-GLASNLGI 768 >gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315] gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315] Length = 917 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA+ G ++V AD + Sbjct: 639 PTTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQ 697 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF GED++ T A F V P +V DQR I KV+ L Y Sbjct: 698 IELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY-- 755 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 756 GMSAF-GLASNLGIT 769 >gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15] Length = 868 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q +T +S+P+ LQ I +R IA EG KLV AD + I Sbjct: 590 RTGRVHTSYHQAVTATGRLSSSEPN-LQNIPIRSEQGRRIRQAFIAPEGYKLVAADYSQI 648 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ LKAFE GED++ T + F V+ V+ DQR K + L Y G Sbjct: 649 ELRIMAHLSGDKGLLKAFEKGEDIHKATASEVFGVSLDDVSSDQRRSAKAINFGLIY--G 706 Query: 445 AKAF 448 AF Sbjct: 707 MSAF 710 >gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 70/149 (46%), Gaps = 28/149 (18%) Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR+ T GA+ TGR S QN+P + T L Sbjct: 620 ADGRIHTTFHQAGAA-TGRLSSSDPNLQNIP-----------VRTEL------------- 654 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 S +R +A G +L+ AD + IE R+LA + + L+AF ED++ T A +F V Sbjct: 655 -SRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGV 713 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448 AP QVT DQR I KV+ + Y G AF Sbjct: 714 APEQVTPDQRRIAKVLNFGIAY--GLSAF 740 >gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K] gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K] Length = 897 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 70/149 (46%), Gaps = 28/149 (18%) Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR+ T GA+ TGR S QN+P + T L Sbjct: 620 ADGRIHTTFHQAGAA-TGRLSSSDPNLQNIP-----------VRTEL------------- 654 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 S +R +A G +L+ AD + IE R+LA + + L+AF ED++ T A +F V Sbjct: 655 -SRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGV 713 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448 AP QVT DQR I KV+ + Y G AF Sbjct: 714 APEQVTPDQRRIAKVLNFGIAY--GLSAF 740 >gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH] Length = 926 Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA G K+V AD + Sbjct: 648 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQ 706 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L+AF GED++ T A F V P +VT DQR I KV+ L Y Sbjct: 707 IELRIMAHISEDESLLRAFANGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 764 Query: 444 GAKAFQKMASTTGLN 458 G +F +AS G+ Sbjct: 765 GMSSF-GLASNLGIT 778 >gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806] Length = 956 Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 74/319 (23%), Positives = 128/319 (40%), Gaps = 76/319 (23%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P+ +R H + +Q IT +S+P+ I S +R I +G LV AD + I Sbjct: 664 PKTARVHTDFNQTITSTGRLSSSNPNLQNIPVRSEFSRRIRQAFIPEDGYLLVSADYSQI 723 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E L+A+ + +D++ T F+ ++T ++R++GK + + Y G Sbjct: 724 ELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFD--KGEITPEERSLGKTINFGVIYGMG 781 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A+ F + + T E Sbjct: 782 AQKFARESKLT-----------------------------------------------VE 794 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILML 562 + +K + H R ++++ L + +Q I G + I+ R+R Y D N L+ L Sbjct: 795 QGRKFIEKYHQRYAQVFQYLENSKKQAIAQGYVETILGRRR------YFNFD-NPLLKRL 847 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 R L D+ + LN QL R +Q S DI+ M+ + Sbjct: 848 ---RGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQ 898 Query: 623 D----IVLTVHDEIVCETP 637 + ++L VHDE+V E P Sbjct: 899 NYRARLLLQVHDELVLEVP 917 >gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400] gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400] Length = 913 Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G KLV AD + IE R++A ++G++ L +F GED++ T A F+V P + Sbjct: 674 IREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V+ DQR + KV+ L Y G +F +AS G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSF-GLASNLGIT 765 >gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158] gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158] Length = 248 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 3/94 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA+ G ++V AD + IE R++A ++G+ L+AF GED++ T A F V P + Sbjct: 9 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 68 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V DQR I KV+ L Y G AF +AS G+ Sbjct: 69 VNADQRRIAKVINFGLIY--GMSAF-GLASNLGI 99 >gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893] gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893] Length = 911 Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q +T +S+P+ LQ I +R +A EG KLV AD + I Sbjct: 633 RTGRIHTSYHQAVTATGRLSSSEPN-LQNIPIRSEQGRRIRQAFVAPEGYKLVAADYSQI 691 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ L AFE GED++ T A F VA V+ DQR K + L Y G Sbjct: 692 ELRIMAHLSGDKGLLTAFEKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINFGLIY--G 749 Query: 445 AKAF 448 AF Sbjct: 750 MSAF 753 >gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1] gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1] Length = 584 Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 112/444 (25%), Positives = 174/444 (39%), Gaps = 94/444 (21%) Query: 44 LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--DIPIHRWICTLVLAR 101 ++D P + LKE LEN V + HN F+ LK F + I I + +L+ Sbjct: 59 VYDMFRIPQFSEHLKELLENKGV--IGHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLSE 116 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + +L A+ + +L+ +++ ++ K T E L Y Sbjct: 117 DSREKHSLSAL--SYRLTDNHLDKSQQRSPWGIKNLTEEQL----------------RYA 158 Query: 162 KGDVTVTREIF-------KRLE---PLSSKEQELWYLDQ--------------TINDRGY 197 DV V REIF R+E + K E + LD I RG Sbjct: 159 AKDVQVLREIFPVLRDELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGM 218 Query: 198 CVDVALAHTLNQIV--DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 VD L + Q V D +R +D YG+ S +K+ WL + GL L Sbjct: 219 PVDEKLLKDMLQKVSTDYQREYIDF---VRRYGVDPFSP--QKVTNWLTSKLGLKLP--- 270 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNR----MRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 TT + LSS + I R +R+ + + KL L +A +GR+ + + Sbjct: 271 -TTQKGSLSSQDSALRRYIDREEVRKLLHIRSEKKILDKLKEL-KAHLINGRIYTQFKQI 328 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 GA TGR + RP+ LQ I+ +R Sbjct: 329 GAP-TGRMASM--------RPN-----------------------LQNITRDLRVLFRPP 356 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EGKKL+VAD + IE R+ A ++ +KAF G+DL+ T + Q+TKD+R + Sbjct: 357 EGKKLIVADYSQIELRIAAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQM 416 Query: 432 GKVMELALGYQGGAKAFQKMASTT 455 K + L Y ++ + A + Sbjct: 417 AKAINFGLIYGISPRSLMEYARNS 440 >gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396] gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396] Length = 911 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 9/150 (6%) Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 R L++ G S+ P PR R H Q + +SDP+ LQ I Sbjct: 607 RVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVAATGRLSSSDPN-LQNIPVRN 665 Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R IA +G KL+ AD + IE R++A ++G++ LKAF G D++ T A FN Sbjct: 666 EQGRRIRQAFIAPKGCKLISADYSQIELRIMAHLSGDEGLLKAFSEGLDVHQATAAEVFN 725 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 VA +V+ +QR K + L Y G AF Sbjct: 726 VAFDEVSSEQRRKAKAINFGLIY--GMSAF 753 >gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13] gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13] Length = 914 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L + G S+ P P R H Q + ++DP+ LQ I Sbjct: 614 LDYRGMSKLKTTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPN-LQNIPIRSEEG 672 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS G K++ AD + IE R++A ++ + LKAF G+D++ T + F++ P Sbjct: 673 RRIREAFIASPGNKIISADYSQIELRIMAHLSDDASLLKAFHDGQDVHRATASEIFDITP 732 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +VT DQR KV+ L Y G AF +AS G++ Sbjct: 733 LEVTSDQRRYAKVINFGLIY--GMSAF-GVASNLGIS 766 >gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43] Length = 926 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA G K+V AD + Sbjct: 648 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQ 706 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L+AF GED++ T A F V P +VT DQR I KV+ L Y Sbjct: 707 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 764 Query: 444 GAKAFQKMASTTGLN 458 G +F +AS G+ Sbjct: 765 GMSSF-GLASNLGIT 778 >gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264] gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264] gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264] Length = 926 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA G K+V AD + Sbjct: 648 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQ 706 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L+AF GED++ T A F V P +VT DQR I KV+ L Y Sbjct: 707 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 764 Query: 444 GAKAFQKMASTTGLN 458 G +F +AS G+ Sbjct: 765 GMSSF-GLASNLGIT 778 >gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4] Length = 926 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA G K+V AD + Sbjct: 648 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQ 706 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L+AF GED++ T A F V P +VT DQR I KV+ L Y Sbjct: 707 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 764 Query: 444 GAKAFQKMASTTGLN 458 G +F +AS G+ Sbjct: 765 GMSSF-GLASNLGIT 778 >gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96] gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96] Length = 930 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EGKK+V AD + IE R++A ++ ++ LKAF +D++ T A F VAP Q Sbjct: 691 IRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLKAFSEEQDVHRATAAEVFGVAPEQ 750 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT D R K + L Y G +F +A GL+ + + A + +N+ Sbjct: 751 VTTDLRRSAKAINFGLIY--GMSSF-GLAQQLGLSRSQAQSYIDLYFA--RYPGVKNYMD 805 Query: 484 WMQENHPEHA-IEDLF 498 ++E E IE LF Sbjct: 806 RIREQAREQGYIETLF 821 >gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3] gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3] Length = 919 Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IAS G ++V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 680 IREAFIASPGCRIVSADYSQIELRIMAHISEDESLLRAFSQGEDIHRATAAEVFGVTPLE 739 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V+ DQR I KV+ L Y G AF +AS G+ Sbjct: 740 VSNDQRRIAKVINFGLIY--GMSAF-GLASNLGIT 771 >gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] Length = 919 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 121/291 (41%), Gaps = 49/291 (16%) Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E+F+RLE L + + G +D A +D + +LDQ L + Y L Sbjct: 512 ELFRRLE------MPLLPVLAGMEQSGVAIDAA---AFRAFLDDVQGQLDQ-LTAHVYEL 561 Query: 230 VSSS---RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR-M 281 + R ++L LF GL T+ +T Q+ L P + R + Sbjct: 562 AGTQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQHPVVDSILQYRKL 621 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 RS L + L ++ GR+ T A+ TGR S S+ L Sbjct: 622 EKMRSTYL--DPLPRLVDPQGRIHTTFN-QKATATGRLSS-------------SNPNLQN 665 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 I P + +RSC IA G+ LV AD + +E RVLA ++ + L+A Sbjct: 666 IPVRGP------------LGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEA 713 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 F GED++ T A +++ P QV+ DQR K + L Y GA QK+A Sbjct: 714 FRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFGLIYGMGA---QKLA 761 >gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] Length = 1060 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 100/237 (42%), Gaps = 43/237 (18%) Query: 216 TKLDQELESLTYGLVSSS---RCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL 269 T+ QEL Y L + ++L LF GL + T+T T VL + Sbjct: 688 TRRSQELAEQIYQLAGETFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAAR 747 Query: 270 TPQAIQVFNNRMRASRSAVLKL-----NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P A V R +++KL + L E + DGR+ T Q A+ TGR S Sbjct: 748 HPIAELVLEYR------SLVKLQGTYVDGLAEHIGPDGRVHTTFQQTVAA-TGRLSSTQP 800 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +P +R +A G +LV AD + I Sbjct: 801 NLQNIP-------------------IRDEP------GRSLRRAFVAPPGHRLVAADYSQI 835 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA +G++ L+AF G+D++ T + F V QVT +QR + K + L Y Sbjct: 836 ELRVLAHYSGDEGLLEAFARGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAY 892 >gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 922 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I + +R+ IA+ G L+ AD + IE R+ Sbjct: 647 RIHTTFHQTLTQTGRLSSSDPNLQNIPARTEEGRRIRAAFIAAPGCILIDADYSQIELRL 706 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++G+ LKAF ED++ T AR F++ P VT + R +GK + ++ Y G AF Sbjct: 707 LAHLSGDTAMLKAFAAKEDIHALTAARVFHMDPVDVTSEHRRVGKTINFSIVY--GISAF 764 >gi|309784631|ref|ZP_07679266.1| DNA polymerase domain protein [Shigella dysenteriae 1617] gi|308927528|gb|EFP73000.1| DNA polymerase domain protein [Shigella dysenteriae 1617] Length = 66 Score = 67.4 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 41/58 (70%), Gaps = 5/58 (8%) Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLY 409 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF T DLY Sbjct: 1 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTDPDLY 58 >gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786] Length = 923 Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA+ G K+V AD + Sbjct: 645 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQ 703 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L+AF GED++ T A F V P +VT DQR I KV+ L Y Sbjct: 704 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 761 Query: 444 GAKAFQKMASTTGLN 458 G +F +AS G+ Sbjct: 762 GMSSF-GLASNLGIT 775 >gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147] Length = 923 Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA+ G K+V AD + Sbjct: 645 PNTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQ 703 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L+AF GED++ T A F V P +VT DQR I KV+ L Y Sbjct: 704 IELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 761 Query: 444 GAKAFQKMASTTGLN 458 G +F +AS G+ Sbjct: 762 GMSSF-GLASNLGIT 775 >gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] Length = 897 Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 28/149 (18%) Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR+ T GA+ TGR S QN+P + T L Sbjct: 620 ADGRIHTTFHQAGAA-TGRLSSSDPNLQNIP-----------VRTEL------------- 654 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 S +R +A G +L+ AD + IE R+LA + + L+AF ED++ T A +F V Sbjct: 655 -SRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGV 713 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448 P QVT DQR I KV+ + Y G AF Sbjct: 714 PPEQVTPDQRRIAKVLNFGIAY--GLSAF 740 >gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] Length = 915 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 87/331 (26%), Positives = 140/331 (42%), Gaps = 68/331 (20%) Query: 158 GEYCKGDVTVTREIFKRLEP-LSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDV 213 G+Y DV T + + L+P L +++QE + + + +D V +A ++ + D+ Sbjct: 473 GDYACADVEATYRLVEVLQPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDL 532 Query: 214 ERTKLDQ--ELESLTYGL------VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRV 262 R Q ELE YGL ++S+R +L T LF E GL T+T Q V Sbjct: 533 SRQLTGQLAELEREIYGLAKHEFNINSTR---QLATVLFDELGLPAGRRTKTGYSVSQEV 589 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L + + P + R +LKL +T V+A+ Sbjct: 590 LENLRHAHPIVDCILEYRQ------LLKLKSTYVDAL----------------------- 620 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS----- 371 P Q P R H +Q I ++DP+ I + VR IA Sbjct: 621 ---PEQVNPETGRIHTSFNQTIAATGRLSSTDPNLQNIPVRTELGRSVRRAFIADNRPGY 677 Query: 372 ----EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 E L+ AD + IE R++A ++G++ + AF G+D++ T A F V QVT D Sbjct: 678 RPFDEEAVLLSADYSQIELRLMAHLSGDERLVHAFREGQDIHAATAADVFGVPLEQVTPD 737 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 R + K + + Y G +A+ +A TG++ Sbjct: 738 MRRVAKTVNFGIMY--GMQAY-GLARDTGMS 765 >gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894] Length = 625 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 386 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 445 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 446 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 477 >gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9] Length = 923 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] Length = 928 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q IT +++P+ LQ I VR IA G K+V AD + Sbjct: 649 PRSGRVHTSYHQAITATGRLSSTEPN-LQNIPIRTEQGRRVRQAFIARPGYKIVAADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ LKAF G+D++ T A FNV+ +VT +QR K + L Y Sbjct: 708 IELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVFNVSLTEVTTEQRRNAKAINFGLIY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1] Length = 845 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 118/271 (43%), Gaps = 37/271 (13%) Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLET 247 ++ D G C+D + T++ +E + + Y S + ++L T LF E Sbjct: 457 SMEDIGICIDKQGVEDFGTYL----TEMIEETQQMVYDDAGHSFNIASPKQLGTVLFEEM 512 Query: 248 GLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 GL + T++ T VL + P V R ++ + L++ + DGR+ Sbjct: 513 GLPAKKKTKSGYSTNAEVLEELRNDAPIVDNVLKFRQYTKLNSTYVVG-LLDKIADDGRI 571 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 + +RTGR S QN+P + T L + Sbjct: 572 HTWFR-QTETRTGRISSTEPNMQNIP-----------VRTELGAQM-------------- 605 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R +A +G+KLV AD + IE RV+A + G++ ++AF +GED++ +T A+ F++ V Sbjct: 606 RKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAFNSGEDIHTSTAAQVFDMPSIMV 665 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 T + R+ K + + Y GA + K T+ Sbjct: 666 TPEMRSAAKAVNFGIIYGIGAFSLAKDIGTS 696 >gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112] Length = 618 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 379 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 438 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 439 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 470 >gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668] gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668] Length = 923 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] Length = 923 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13] gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13] Length = 923 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98] Length = 620 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 381 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 440 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 441 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 472 >gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14] Length = 619 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 380 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 439 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 440 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 471 >gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] Length = 876 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 637 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 696 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 697 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 728 >gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210] Length = 622 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 383 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 442 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 443 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 474 >gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e] gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e] Length = 923 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91] Length = 622 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 383 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 442 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 443 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 474 >gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b] gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b] Length = 923 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305] gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305] Length = 923 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215] Length = 923 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] Length = 936 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H +QI +++P+ LQ I +R +A+ G + V AD + Sbjct: 657 PRTGRIHTSYNQIGAATGRLSSNNPN-LQNIPVRTEEGREIRRAFVAAPGHRFVAADYSQ 715 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA ++G++ + AF+ G D++ T +R F VAP QV K+QR + K + + Y Sbjct: 716 IELRVLAHISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVIY-- 773 Query: 444 GAKAF 448 G AF Sbjct: 774 GISAF 778 >gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a] gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a] Length = 923 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177] gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] Length = 923 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 775 >gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229] gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247] gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH] gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU] gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247] gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH] gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU] gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229] Length = 926 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K+V AD + IE R++A ++ ++ L+AF GED++ T A F V P + Sbjct: 687 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT DQR I KV+ L Y G +F +AS G+ Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSF-GLASNLGIT 778 >gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843] gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843] Length = 956 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 74/319 (23%), Positives = 127/319 (39%), Gaps = 76/319 (23%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P+ +R H + +Q IT +S+P+ I S +R I G LV AD + I Sbjct: 664 PKTARVHTDFNQTITSTGRLSSSNPNLQNIPIRSEFSRRIRQAFIPENGYLLVSADYSQI 723 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E L+A+ + +D++ T F+ ++T ++R++GK + + Y G Sbjct: 724 ELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFD--KREITPEERSLGKTINFGVIYGMG 781 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A+ F + + T E Sbjct: 782 AQKFARESKLT-----------------------------------------------VE 794 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILML 562 + +K + H R ++++ L + +Q I G + I+ R+R Y D N L+ L Sbjct: 795 QGRKFIEKYHQRYAQVFEYLENSKKQAITQGYVETILGRRR------YFNFD-NPLLKRL 847 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 R L D+ + LN QL R +Q S DI+ M+ + Sbjct: 848 ---RGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQ 898 Query: 623 D----IVLTVHDEIVCETP 637 + ++L VHDE+V E P Sbjct: 899 NYRARLLLQVHDELVLEVP 917 >gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 92 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ V++WD D MP LK + Sbjct: 5 LFCDLETYSDIPIN-CGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63 Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPI 90 ++ V HN F+ +LK N+D+P+ Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLPL 91 >gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium] Length = 803 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 34/274 (12%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 EQ L + Q IN G +D A L+ + E T L+ ++ + G + +++ Sbjct: 394 EQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHA-GREFNINSPKQMGE 452 Query: 242 WLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF E GL ++ +T T + L ++ P ++ R + ++ L Sbjct: 453 VLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYR-ELQKLVSTYIDNLP 511 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 +++DGRLR T GA+ TGR + QN+P R+ E Sbjct: 512 PLVSADGRLRTTFVQTGAA-TGRMASQNPNLQNIP--IRTEE------------------ 550 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 S +R +AS G +V D + IE R+ A ++ ++ ++ F GED++ R Sbjct: 551 -----SKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVAVR 605 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 F V P +VT++ R KV+ + Y G A + Sbjct: 606 VFGVTPEEVTREMRRKAKVINFGILYGMGVNALR 639 >gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010] gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010] Length = 894 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 7/149 (4%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 +Q+ G S+ P Q R H Q +T +SDP+ LQ I Sbjct: 594 MQYRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRSENG 652 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +AS G L+ AD + IE R++A ++G++ LKAF GED++ T + F++A Sbjct: 653 RRIREAFVASNGYTLLAADYSQIELRIMAHLSGDESLLKAFAAGEDIHRHTASEIFDIAL 712 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK 450 V+ DQR K + L Y A K Sbjct: 713 EDVSSDQRRSAKAINFGLIYGMSAHGLSK 741 >gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] Length = 880 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 26/148 (17%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +A++ DGR+R T + + TGR S QNLP I +D Sbjct: 597 LEKAIDDDGRIRSTFR-QNIAATGRLSSQDPNLQNLP-------------------IKTD 636 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 L +R A +GK L+ AD + IE R+LA ++G++ ++AF GED++ T Sbjct: 637 EGRL------IRKAFKAGQGKILIDADYSQIELRILASLSGDEHMIEAFRNGEDIHAKTA 690 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ F+ +VTK QR+ K + + Y Sbjct: 691 SKVFHTPLDEVTKRQRSDAKAVNFGIIY 718 >gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8] gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8] Length = 908 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q +T +S+P+ LQ I +R IA +G KL+ AD + I Sbjct: 630 RTGRVHTSYHQAVTATGRLSSSEPN-LQNIPIRTQEGRRIRQAFIAPKGYKLLAADYSQI 688 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ L AFE GED++ T A F V +VT DQR K + L Y G Sbjct: 689 ELRIMAHLSGDRGLLTAFEHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIY--G 746 Query: 445 AKAF 448 AF Sbjct: 747 MSAF 750 >gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] Length = 845 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 8/140 (5%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380 PQ + SR H +Q+ T +S P+ I +R C +A EG +LV AD Sbjct: 563 PQKVDDTSRLHTHFNQLATATGRLSSSGPNLQNIPIRGEFGPRMRQCFVAPEGSRLVAAD 622 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ + L+AF GED++ T A ++A V + R K + L Sbjct: 623 YSQIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIADEHVDSEARRQAKTINFGLL 682 Query: 441 YQGGAKAFQKMASTTGLNLN 460 Y G QK++ G++LN Sbjct: 683 YGMGP---QKLSRELGISLN 699 >gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088] gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088] Length = 908 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVVADLAGI 384 PR R H Q +T +SDP+ P++ + +R IA E +V AD + I Sbjct: 630 PRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRSVEGRAIRKAFIAPENHVIVAADYSQI 689 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G+ L AF G D++ T A F VA +VT DQR K + L Y G Sbjct: 690 ELRIMAHLSGDAGLLTAFNEGLDVHAATAAEVFGVALDEVTSDQRRSAKAINFGLIY--G 747 Query: 445 AKAF 448 AF Sbjct: 748 MSAF 751 >gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ] gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ] Length = 908 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q +T +SDP+ LQ I +R +A EG +LV Sbjct: 624 LPQQINPRTGRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTTEGRRIRQAFVAPEGYRLV 682 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A +A + L AF D++ T A F VAP V+ DQR K + Sbjct: 683 AADYSQIELRIMAHLAQDTSLLHAFRNDLDVHRATAAEVFGVAPEAVSADQRRSAKAINF 742 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 743 GLIY--GMSAF 751 >gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] Length = 889 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 109/260 (41%), Gaps = 41/260 (15%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQ----ELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 G VD ++D ER DQ EL T+ + S+ ++L LF + GL Sbjct: 506 GMLVDRKALSEFGDMLD-ERIAADQAEIYELAGETFNINST----QQLGKILFDKLGLPP 560 Query: 252 EDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+T T VL + P ++ R + ++ L + + DGR+ + Sbjct: 561 VKKTKTGYSTNAEVLEKLRGQHPIIDKILEYRQYTKLKSTY-VDGLGKVIAPDGRIHTSF 619 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 Q + TGR S QN+P + EL R Sbjct: 620 QNT-VTATGRLSSTEPNLQNIPVRTELGAEL-------------------------RKMF 653 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A GK LV AD + IE R+LA +AG++ ++AF TGED++ T A+ F V QVTK Sbjct: 654 VAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRTGEDIHTVTAAQVFGVPVDQVTKHM 713 Query: 429 RAIGKVMELALGYQGGAKAF 448 R+ K + + Y G AF Sbjct: 714 RSSAKAVNFGIVY--GISAF 731 >gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] Length = 1072 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 95/232 (40%), Gaps = 33/232 (14%) Query: 216 TKLDQELESLTYGLVSSS---RCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL 269 T+ QEL Y L + ++L LF GL + T+T T VL + Sbjct: 700 TRRSQELAEQIYELAGQTFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAAR 759 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P A V R ++ L E + DGR+ T Q A+ TGR S QN+ Sbjct: 760 HPIAELVLEYRSLVKLQGTY-VDGLAEHIGPDGRIHTTFQQTVAA-TGRLSSTQPNLQNI 817 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P I +P +R +A G +LV AD + IE RVL Sbjct: 818 P-------------------IRDEP------GRSLRRAFVAPPGHRLVAADYSQIELRVL 852 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A +G+ ++AF G+D++ T + F V QVT +QR + K + L Y Sbjct: 853 AHYSGDPGLVEAFAQGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAY 904 >gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] Length = 904 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 29/170 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L + +N++GR+ L A+ TGR S QN+P I Sbjct: 618 LEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPNLQNIP-------------------I 657 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 D +R+C A EG +L AD + +E RVLA +G+ + AFE ED++ Sbjct: 658 RGDQ------GKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSAFEHDEDIHS 711 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 T A F+ PA VT D+R K + L Y G QK++ G+ +N Sbjct: 712 RTAALLFDRDPADVTSDERRNAKTINFGLIYGMGP---QKLSRELGIKIN 758 >gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] Length = 874 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 32/252 (12%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF++ GL + T+T T VL + + P ++ R + S+ ++ Sbjct: 532 KQLGDVLFVKLGLPAKKKTKTGYSTNVDVLEALRPQHPIIGEILEYR-KLSKLKSTYVDG 590 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + DGR+R T Q +RTGR S QN+P + + + T P Sbjct: 591 LLKVVGPDGRVRSTFQQT-ETRTGRISSTEPNLQNIPIRTEEGSRMRRFFTARP------ 643 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 G KLV AD + IE RVLA +A +Q + AF++GED++ TT Sbjct: 644 -------------------GWKLVDADYSQIELRVLADLADDQNMIAAFQSGEDIHATTA 684 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTNSA 471 A+ F + VT R+ K + + Y GA + + T +++ ++L Sbjct: 685 AQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGAFSLSQDIGVTVSEADSYIKSYLAHYAGV 744 Query: 472 PEEWEDAENFCR 483 + ED F R Sbjct: 745 RKYMEDTIAFAR 756 >gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei] Length = 615 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R +A G K+V AD + Sbjct: 337 PDTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQ 395 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++ ++ ++ L+AF GED++ T A F V P +VT DQR I KV+ L Y Sbjct: 396 IELRIMLHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIY-- 453 Query: 444 GAKAFQKMASTTGLN 458 G +F +AS G+ Sbjct: 454 GMSSF-GLASNLGIT 467 >gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica] Length = 929 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T + DP+ LQ I +R IASEG +++ Sbjct: 646 PQMVHPLTKRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIASEGYRIMA 704 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ +Q LKAF G+D++ T A F+V QVT +QR K + Sbjct: 705 ADYSQIELRIMAHLSQDQGLLKAFAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFG 764 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 765 LIY--GMSAF 772 >gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18] gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18] Length = 892 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H +Q IT+ +SDP+ LQ I +R IA G ++ AD + Sbjct: 614 PKTGRVHTSYNQAITNTGRLSSSDPN-LQNIPVRGEEGRGIRRAFIAEPGSLILSADYSQ 672 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA ++G++ +AF GED++ T A F + P VT + R KV+ + Y Sbjct: 673 IELRVLAHLSGDRVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQAKVINFGVIYGQ 732 Query: 444 GAKAFQK 450 GA + K Sbjct: 733 GAFSLAK 739 >gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685] gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685] Length = 930 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P+ R H Q + +++P+ LQ I VR A +G +V Sbjct: 644 LPEMIFPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 702 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F +AP V+ +QR K + Sbjct: 703 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINF 762 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ TF Sbjct: 763 GLIYGMGQYGLAKSLGIDNLSAKTF 787 >gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989] gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989] Length = 782 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 9/141 (6%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVA 379 PQ + P R H Q +T +SDP+ I I + +R +A +G K++ A Sbjct: 493 PQMINPATGRIHTSYHQAVTATGRLSSSDPNLQNIPIRNAEGRRIRQAFVAPKGYKILAA 552 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++G++ L+AF G+D++ T A F V QVT++QR K + L Sbjct: 553 DYSQIELRIMAHLSGDEGLLEAFNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGL 612 Query: 440 GYQGGAKAFQKMASTTGLNLN 460 Y G AF +A G+ N Sbjct: 613 IY--GMSAF-GLAKQLGVGRN 630 >gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977] gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977] Length = 839 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 123/289 (42%), Gaps = 47/289 (16%) Query: 169 REIFKRLEPLSSKEQELWYLDQTIND-----------RGYCVDVALAHTLNQIVDVERTK 217 RE+ RLE E+ LW+L + + RG +DV L+Q + E + Sbjct: 422 REMSDRLE----GEERLWWLYREVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELER 477 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277 L+ E+ L G + ++L+T L+ E GL T T +R S++ T Sbjct: 478 LEAEIHRLA-GHPFNLNSRDQLETVLYDELGLAAGRRTAKTGKRSTSASVLET------- 529 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R + V K+ E +L+GT +L P PR R H Sbjct: 530 ---LRGAHPIVEKILQYREL----AKLKGT--YLDP----------LPKLVHPRTGRLHT 570 Query: 338 ELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q T +SDP+ P++ I +R +A EG LVVAD + IE RVLA + Sbjct: 571 RFHQTGTATGRLSSSDPNLQNIPIRTEIGRRIRKGFVAGEGYLLVVADYSQIELRVLAHL 630 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +G++ ++ F+ G D++ T A F V +V +R K + + Y Sbjct: 631 SGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAAKTINFGVLY 679 >gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] Length = 891 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q IT +++P+ P+++ I +R+ ++ + K+LV AD + + Sbjct: 613 PIDGRIHSTFNQTITTTGRISSTEPNLQNIPVRMEIGRRLRAVFVSDDEKRLVDADYSQV 672 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA M+G+Q + AF+ GED++ T ++ FNV +VT + R+ K + + Y Sbjct: 673 ELRVLAHMSGDQNMIDAFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIY 729 >gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 957 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA++G K+V AD + Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796 >gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 957 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA++G K+V AD + Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796 >gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6] gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6] Length = 934 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 48/82 (58%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR +A+ G KLV AD + IE R++A ++G+ LKAF G D++ T A FN+A A Sbjct: 695 VREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLKAFADGMDVHRATAAEVFNIAAAD 754 Query: 424 VTKDQRAIGKVMELALGYQGGA 445 VT +QR K + L Y GA Sbjct: 755 VTSEQRRYAKTINFGLIYGMGA 776 >gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 957 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA++G K+V AD + Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796 >gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] Length = 942 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 11/152 (7%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376 P Q PR R H E Q + +++P+ LQ I + ++ V E L Sbjct: 657 LPKQIHPRTKRVHTEFMQTVAATGRLSSNNPN-LQNIPIRTERGREVRKAFVPRDENYVL 715 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++ E+ + AF+ GED++ +T AR F V +VT+ QR+ K + Sbjct: 716 LAADYSQIELRIIAALSQEKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTVN 775 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + Y G AF +++ T L N L++T Sbjct: 776 FGIIY--GVSAF-GLSNQTDLTRNESKELIET 804 >gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 957 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA++G K+V AD + Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796 >gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836] gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836] Length = 901 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382 PR +R H +Q I ++DP+ LQ I +R + EG + L+ AD + Sbjct: 621 PRDARIHTTFNQTIAATGRLSSTDPN-LQNIPIRTEEGRRIREAFVVGEGYESLMSADYS 679 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++ ++ + AF +GED + T AR F+V P +VT++ RA K M L Y Sbjct: 680 QIEMRIMAHVSEDEGLIDAFNSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAY 738 >gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18] gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18] Length = 1003 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 115/276 (41%), Gaps = 35/276 (12%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS-------- 233 E L Y+ + G V AL L+ + + ++ G V++ Sbjct: 584 ELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQESARAIIGGEVATEDGEEPLNL 643 Query: 234 RCLEKLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++L+T LF GL ++ T + V K++P++ A+ + Sbjct: 644 ASVKQLQTVLFETLGLPHTRKIKSGYSTDAESVTELLSKISPESDGAAFLGALAAYRDNI 703 Query: 290 KLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 KL VE A DGR+ T Q GA+ TGR S QN+P R+ E Sbjct: 704 KLAQTVEGLQKAATEDGRVHTTFQ-QGAASTGRLSSTAPNLQNIP--IRTEEG-----RR 755 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + + P+P+ + E + L+ AD + IE R++ +A ++ + A+E G Sbjct: 756 IRGAFIVAPEPIDGV-----------EYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAG 804 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 EDL+ + F VAP VT +QR+ K M L Y Sbjct: 805 EDLHRYVGSEVFGVAPEDVTPEQRSKVKAMSYGLAY 840 >gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 314 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 41 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 99 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 100 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 157 Query: 448 F 448 F Sbjct: 158 F 158 >gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB] gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB] Length = 906 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R+ IA G +V AD + Sbjct: 628 PQTGRVHTHFSQAAVVTGRLASSDPN-LQNIPVRSEEGRKIRTAFIAPAGSSIVSADYSQ 686 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L AF GED++ T F V P +V DQR + K + L Y Sbjct: 687 IELRIMAHLSGDERLLDAFAHGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINFGLIY-- 744 Query: 444 GAKAFQKMASTTGL 457 G AF +A GL Sbjct: 745 GMSAF-GLARQLGL 757 >gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047] gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047] Length = 610 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 337 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 395 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 396 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 453 Query: 448 F 448 F Sbjct: 454 F 454 >gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] Length = 837 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 35/260 (13%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ VD A + D R +LD L+S+ G + ++L LF + GL Sbjct: 455 GFAVD---ADGIRAFGDSLRGELDGILQSIYEEVGYEFNVNSPKQLGEALFDKLGLPPRK 511 Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T +T L S + +P Q+ R A + + L+ A +DGR+ T Sbjct: 512 KTSRGYSTDAATLESLRPYSPVIDQILKYRTYAKLLSTY-VEGLLSAQAADGRVHSTF-I 569 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 +RTGR S QN+P I T L + + R +A Sbjct: 570 QTEARTGRISSTEPNLQNIP-----------IRTELGSRL--------------RGFFVA 604 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 GK+LV AD + IE R+LA + G++ +AF G D++ +T A+ +++ ++VT R+ Sbjct: 605 GAGKELVDADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVTPQLRS 664 Query: 431 IGKVMELALGYQGGAKAFQK 450 K + + Y GA + K Sbjct: 665 ASKAINFGIMYGKGAFSLSK 684 >gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] Length = 952 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 83/314 (26%), Positives = 133/314 (42%), Gaps = 41/314 (13%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL---- 251 G VD +L ++ + VE +L +E + G + ++L LF E GL + Sbjct: 569 GITVDASLLAQESKELGVEVEQLVEEAHA-AAGHPFNLSSPKQLAQILFAEQGLPVVKKT 627 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T +T + VLS P + +R R ++ L+ L ++ DGR+ T Sbjct: 628 ASGTPSTDEEVLSELALNYPLPKIILEHR-RLTKLKSTYLDKLPTLIDRDGRIHTTFG-Q 685 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P T P+ +I R+ A Sbjct: 686 AVAVTGRLSSMDPNLQNIP--------------------TRTPEGRRI-----RTAFTAR 720 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 G ++ AD + +E R++A ++ + L AF GED++ +T A F+ QVT DQR + Sbjct: 721 RGWSVIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPDQRRM 780 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 KV+ L Y G AF +A GL+ A V E + R+M++ + Sbjct: 781 AKVINFGLIY--GMSAF-GLAQQMGLDRQVAAAYVD-----EYFHKFPGVKRYMEKTRAQ 832 Query: 492 HAIEDLFIGTACER 505 A ED ++ TA R Sbjct: 833 -AAEDGYVETAFGR 845 >gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131] gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131] Length = 930 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q +T + DP+ LQ I +R IA EG K++ AD + Sbjct: 652 PRTQRVHTSYHQAVTATGRLSSRDPN-LQNIPVRTEEGRRIRQAFIAREGYKVMAADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F V QVT DQR K + L Y Sbjct: 711 IELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSAKAINFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963] gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963] Length = 531 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 38/199 (19%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ +++DGRLR +GA+ +GR C P L QI + Sbjct: 235 LLAMVDTDGRLRTDYAQIGAA-SGRII-CSKP------------NLQQIPAEEEEEGQEE 280 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 P VR C +A G +++ ADL+ IE R+LA ++ +Q L+ F G+DL+ T Sbjct: 281 P---------VRHCFVAPPGYRILKADLSNIELRILAEVSRDQTMLRLFAEGKDLHAETA 331 Query: 414 ARSFNVAPAQVTKDQ-------RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 F+++P TK R I K + L Y GA +A+ G++L T L+ Sbjct: 332 KLMFHLSPETDTKRHLYKGVPGRKIAKTINFGLAYGMGANG---LANRAGVDLPTAKSLI 388 Query: 467 KTNSAPEEWEDAENFCRWM 485 +T +E RW+ Sbjct: 389 RTY-----FETYRGIARWL 402 >gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021] gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021] Length = 743 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 470 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 528 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 529 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 586 Query: 448 F 448 F Sbjct: 587 F 587 >gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20] gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20] gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] Length = 930 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRHIRQAFIAREGYSIVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379] gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379] Length = 893 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 5/151 (3%) Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD--PLQIISD 362 R L + G S+ P PR R H +Q +T +SDP+ + I SD Sbjct: 590 RLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSSDPNLQNIPIRSD 649 Query: 363 ---CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R IA G ++ AD + IE RVLA ++G+ +AFE ED++ T + F + Sbjct: 650 EGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFCQAFEHDEDIHTRTASEVFGL 709 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 P VT + R K + + Y G+ + + Sbjct: 710 FPEMVTAEMRRQAKTINFGIIYGQGSFSLAR 740 >gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA] gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA] Length = 935 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 662 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 720 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 721 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 778 Query: 448 F 448 F Sbjct: 779 F 779 >gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus influenzae 10810] Length = 935 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 662 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 720 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 721 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 778 Query: 448 F 448 F Sbjct: 779 F 779 >gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996] gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996] Length = 933 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 51/99 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 692 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHCRTAAEVFGIAPEN 751 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ TF Sbjct: 752 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 790 >gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] Length = 930 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SD---CVRSCVIASEGKKLV 377 P P R H Q +T +SDP+ LQ I SD +R IA G K+V Sbjct: 646 LPQMVSPLTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRSDEGRRIRQAFIAPAGSKIV 704 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ L+AF G+D++ T A F + VT DQR K + Sbjct: 705 AADYSQIELRIMAHLSGDRGLLEAFAAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINF 764 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 765 GLIY--GMSAF 773 >gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127] gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127] Length = 930 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP] gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP] Length = 930 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] Length = 882 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P+ R H +Q IT +++P+ I + +R +A E KLV AD + + Sbjct: 604 PKTGRIHSSFNQTITTTGRISSTEPNMQNIPVKTEMGRDIRKVFVADENCKLVDADYSQV 663 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA M+G++ + AF+ GED++ T ++ F+V VT QR K + + Y Sbjct: 664 ELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKDVTSKQRIEAKAINFGIIY 720 >gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo] gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis] Length = 1613 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 35/203 (17%) Query: 254 LTETTCQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 L + T +R LS N QA++ + +A + K+ +++ + GR+ + +G Sbjct: 1301 LIQDTSERTLSRNTYHPAIQALREYRKTNKAVTAFTEKIPNHIDS--ATGRIYPNINQIG 1358 Query: 313 ASRTGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 A +GR+S C P Q +PR SR R C IA Sbjct: 1359 A-ESGRFS-CDNPNLQQIPRDSR-----------------------------FRECFIAD 1387 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 +G KLV+AD + IE R+ A +A ++ ++A+ +GEDL+ T + N ++VTK++R + Sbjct: 1388 KGNKLVIADFSQIELRIAADIAEDRRMIEAYNSGEDLHSLTASLVKNKPISEVTKEERQL 1447 Query: 432 GKVMELALGYQGGAKAFQKMAST 454 K + L + F+ A + Sbjct: 1448 AKAVNFGLIFGMSLAGFRNYAES 1470 >gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH] gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH] Length = 930 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 575 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 1/129 (0%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R +R + E QI +S+P+ +Q I +R A EG V+AD + IE R+ A Sbjct: 307 RGNRVYPEFKQIGAVTGRMASSNPN-VQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAA 365 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 GE ++AF+ G DL+ T + +TK++R + K + L Y AK + Sbjct: 366 EYVGEIRMIRAFQEGRDLHRYTASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQ 425 Query: 451 MASTTGLNL 459 A+T G++L Sbjct: 426 YAATYGIDL 434 >gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] Length = 920 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG +V AD + IE R++A ++ ++ LKAF ED++ T A F +AP Q Sbjct: 681 IREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFANNEDIHRATAAEIFGIAPEQ 740 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V +QR KV+ L Y G AF +AS G+ Sbjct: 741 VESEQRRYAKVINFGLIY--GMSAF-GLASNLGI 771 >gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] Length = 905 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 109/262 (41%), Gaps = 32/262 (12%) Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 T+ G VD+ H L D + Q+ G + ++L+ LF GL Sbjct: 514 TMEQAGIAVDLDALHELEADYDAQVVAAQQDAWDAIGGEQVNLGSPKQLQVVLFETLGLP 573 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT---LVEAMNSDGRLRGT 307 T+T + L+ +A F + + R A +T L++++ DGR+ T Sbjct: 574 KTKKTKTGYTTDAEAIADLSEKAPHPFLDALLRHRDASKLRSTVQGLIKSIGDDGRIHTT 633 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 Q A+ TGR S QN+P + S +R Sbjct: 634 YQQTIAA-TGRLSSTDPNLQNIPIRTESGRR-------------------------IRRV 667 Query: 368 VIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + EG L+ AD + IE RV+A ++G++ ++AF GEDL+ +R F V P++VT Sbjct: 668 FVVGEGYDCLMSADYSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGSRVFGVEPSEVTS 727 Query: 427 DQRAIGKVMELALGYQGGAKAF 448 + RA K M L Y G AF Sbjct: 728 EMRAKVKAMSYGLAY--GLSAF 747 >gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846] Length = 930 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031] gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031] Length = 935 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 662 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 720 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 721 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 778 Query: 448 F 448 F Sbjct: 779 F 779 >gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093] gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093] Length = 867 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q T +++P+ I + +R +A EG L+VAD + I Sbjct: 591 PHTGRLHTTFNQTATATGRLSSANPNLQNIPVRTAVGREIRRAFVADEGATLLVADYSQI 650 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+LA + GE+ ++ F GED++ T A+ F V P VT + R + KV+ + Y Sbjct: 651 ELRILAHITGEEALVETFRRGEDIHRRTAAQIFGVPPEAVTPEGRRVAKVINFGVLY 707 >gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE] gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE] Length = 930 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] Length = 903 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P + P R H Q + +SDP+ LQ I +R +A G++LV Sbjct: 619 LPERIDPDTGRVHTSYHQAVASTGRLSSSDPN-LQNIPIRTEEGRRIRQAFVAPSGRRLV 677 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G+ L+AF G+D++ T A F V QV+ +QR K + Sbjct: 678 AADYSQIELRIMAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINF 737 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 738 GLIY--GMSAF 746 >gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1] gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1] Length = 930 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256] gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256] Length = 952 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 51/99 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 711 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 770 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ TF Sbjct: 771 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 809 >gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] Length = 930 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 716 IMAHLSGDQGLISAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens] Length = 939 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 10/151 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q + +SDP+ LQ I +R +A +G KL+ Sbjct: 655 LPEQINPRTGRIHTSYHQAVASTGRLSSSDPN-LQNIPVRTAEGRRIRQAFVAPKGYKLL 713 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ + AF D++ T A F V +VT DQR K + Sbjct: 714 AADYSQIELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF 773 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 L Y GA QK+ G++ T + T Sbjct: 774 GLIYGMGA---QKLGKDIGVDTKTAKAYIDT 801 >gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6] gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6] Length = 931 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q + +SDP+ LQ I +R +A +G KL+ Sbjct: 647 LPEQINPRTGRIHTSYHQAVAATGRLSSSDPN-LQNIPVRTAEGRRIRQAFVAPKGYKLL 705 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ + AF D++ T A F V +VT DQR K + Sbjct: 706 AADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINF 765 Query: 438 ALGYQGGAKAFQKMASTTGLNLNT 461 L Y GA QK+ G++ T Sbjct: 766 GLIYGMGA---QKLGKDIGVDTKT 786 >gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] Length = 935 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 10/151 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q + +SDP+ LQ I +R +A +G KL+ Sbjct: 651 LPEQINPRTGRIHTSYHQAVASTGRLSSSDPN-LQNIPVRTAEGRRIRQAFVAPKGYKLL 709 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ + AF D++ T A F V +VT DQR K + Sbjct: 710 AADYSQIELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF 769 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 L Y GA QK+ G++ T + T Sbjct: 770 GLIYGMGA---QKLGKDIGVDTKTAKAYIDT 797 >gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 958 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 51/99 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 717 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 776 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ TF Sbjct: 777 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 815 >gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] Length = 932 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + +S+P+ LQ I VR A G +V AD + Sbjct: 652 PRTGRVHTTYSQAVAITGRLASSNPN-LQNIPIRTAEGRRVRRAFTAPAGSLIVSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y Sbjct: 711 IELRIMAHLSGDKTLMAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGM 770 Query: 444 GAKAFQKMASTTGLNLNTF 462 G K L+ F Sbjct: 771 GQYGLAKSLGIDNLSAKNF 789 >gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] Length = 918 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%) Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R +++ N+++E + D + G + Q+ S+ P P+ R H + Sbjct: 587 RKTKTGYSTDNSVLEELAIDYEIAGIIIQYRQLSKLQSTYVSALPKMINPQTGRIHSSFN 646 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAG 394 Q +T +S+P+ I I +R A + + L++ AD + IE R+LA M+ Sbjct: 647 QTVTSTGRLSSSNPNLQNIPVRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSE 706 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AF+ D++ A+ FNV +VT DQR K + + Y G + K++ Sbjct: 707 DEVLIEAFKQDLDIHKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQR---KLSRE 763 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHAIEDLF 498 G++LN ++ A ++ NF + + + +H E LF Sbjct: 764 LGISLNEAKDIIDGYYA--QFPSIRNFINQCVNKARQQHYAETLF 806 >gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957] gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957] Length = 960 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +V AD + IE R++A ++G+ ++AF G+D++ T A F V P + Sbjct: 713 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 772 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT +QR KV+ L Y G AF +AS G+ Sbjct: 773 VTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 804 >gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] Length = 913 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 8/156 (5%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC---- 363 L F G ++ P P R H Q + ++DP+ I Sbjct: 613 LDFRGMAKLKSTYTDKLPRMINPETGRVHTNYAQAVAVTGRLASNDPNLQNIPVKTEEGR 672 Query: 364 -VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R IA G +V AD + IE R++A ++ + LKAF G+D++ T + F++AP Sbjct: 673 RIREAFIAPAGCYIVSADYSQIELRIMAHLSDDPGLLKAFREGQDVHKATASEIFDIAPL 732 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +VT +QR KV+ L Y G AF +AS G++ Sbjct: 733 EVTPEQRRYAKVINFGLIY--GMSAF-GVASNLGIS 765 >gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock] Length = 595 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 121/489 (24%), Positives = 184/489 (37%), Gaps = 98/489 (20%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69 +D G+ Y++ L FG D PVEL D + V ++ AL +V Sbjct: 40 VDTETTGLDIYSDTFECRLVQFGTQDEAWVVPVELGDVFIEDV--RIAIGALRK----VV 93 Query: 70 AHNSYFERTVLKACFNLDIPI--HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 N+ ++ VL CF +++ R + T +LA+ P +A G L + Sbjct: 94 LQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVD-PRPFEAGGFGHSL--------E 144 Query: 128 ELIARFCKGETHEC-------LYDRNKPNHREAWRL-------FGEYCKGDVTVTREIFK 173 ELIA F E E L +K + W + +Y D T + K Sbjct: 145 ELIAEFISKEQAETVKKLMAKLAQEHKTTKAKIWATIDLFHPEYLKYAGMDTIFTARVCK 204 Query: 174 RLEPLS--------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L PL + E E+ + I+ +G+ +DV A L Sbjct: 205 ALTPLVPDVSRGLVAYEHEISEICSYIDRQGFLLDVEYAQEL------------------ 246 Query: 226 TYGLVSSSRCLEKLKTW---LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 S + L + W F E G+ + TE + + K+T R Sbjct: 247 ------SDKWLADQQVWEAIAFTEYGVEKVNSTEDLAEGLEEMGVKIT--------GRTE 292 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS--RSHEELD 340 + V K TL+E + ++G T+ A + G+W R + R H ++ Sbjct: 293 TGKRQVDK--TLLEKLVAEGNELATIA-QEAKKLGKWRKTWVQKFLDTRDAEDRCHTFVN 349 Query: 341 QIITHLP-TSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 + SIT P SD VR C +A EG + D E RVLA ++ +Q Sbjct: 350 PLQARTSRMSITGIPAQTLPASDSTVRRCFLAEEGDVMASIDYQTQELRVLAALSNDQTM 409 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS----T 454 ++AF+TG DL+ T AQVT R +GK+ Y GGAK + A T Sbjct: 410 IEAFKTGADLHQMT------ADAAQVT---RKVGKMANFLTVYGGGAKTLAEQAKVDFPT 460 Query: 455 TGLNLNTFA 463 L+ FA Sbjct: 461 AKRTLDAFA 469 >gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] Length = 893 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 26/152 (17%) Query: 291 LNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++TL + +N GR+ + G + TGR S QNLP S +E+ + I Sbjct: 608 IDTLPKLVNPKTGRIHASFHQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------ 660 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + DPD +V AD + IE R+LA ++G++ +KAFE G D++ Sbjct: 661 VPQDPDWW------------------IVSADYSQIELRILAHLSGDENLVKAFEEGIDVH 702 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T +R +NV P +V ++ R +GK++ ++ Y Sbjct: 703 TLTASRIYNVKPEEVNEEMRRVGKMVNFSIIY 734 >gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] Length = 944 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +V AD + IE R++A ++G+ ++AF G+D++ T A F V P + Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 756 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT +QR KV+ L Y G AF +AS G+ Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 788 >gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII] gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII] gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866] Length = 935 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +V AD + IE R Sbjct: 662 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELR 720 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ ++T +QR K + L Y G A Sbjct: 721 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIY--GMSA 778 Query: 448 F 448 F Sbjct: 779 F 779 >gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] Length = 944 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +V AD + IE R++A ++G+ ++AF G+D++ T A F V P + Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 756 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT +QR KV+ L Y G AF +AS G+ Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 788 >gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551] gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551] Length = 946 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +V AD + IE R++A ++G+ ++AF G+D++ T A F V P + Sbjct: 699 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 758 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT +QR KV+ L Y G AF +AS G+ Sbjct: 759 VTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 790 >gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] Length = 929 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 51/99 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 688 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 747 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ TF Sbjct: 748 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 786 >gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] Length = 879 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 26/148 (17%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +A++ DGR+R T + + TGR S QNLP I +D Sbjct: 596 LEKAIDEDGRIRSTFR-QNIAATGRLSSQDPNLQNLP-------------------IKTD 635 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 L +R A EGK L+ AD + IE R+LA ++G++ + AF+ G D++ T Sbjct: 636 EGRL------IRKAFRAEEGKILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTA 689 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ F+ +VTK QR+ K + + Y Sbjct: 690 SKVFHTDLDKVTKRQRSEAKAVNFGIIY 717 >gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] Length = 932 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA EG +V AD + Sbjct: 655 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ +Q + AF G+D++ +T A F VA +VT +QR K + L Y Sbjct: 714 IELRIMAHLSQDQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] Length = 928 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 51/99 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 687 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 746 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ TF Sbjct: 747 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 785 >gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100] Length = 864 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 79/307 (25%), Positives = 133/307 (43%), Gaps = 50/307 (16%) Query: 169 REIFKRL-EPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKL 218 R++ K L E L++ +QE Y D + G VD L ++ + K+ Sbjct: 442 RDLVKVLTEKLAAAKQEELYYDLEVPLCLILARMEHEGIAVD---GEHLQELSNDYAAKI 498 Query: 219 DQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 D+E+ + S+ L ++L+ LF + L T+T + +KLT Q Sbjct: 499 DEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTGYSTAAAELEKLTAQTNH 558 Query: 276 VFNNRMRASR---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 F + A R ++ L+EA+ DGR+ T GA+ TGR S QN+P Sbjct: 559 PFLAHLMAHREYQKMKTTIDGLIEAIGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIP-- 615 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +D +R+ A G+ L+ AD + IE RV+A + Sbjct: 616 -----------------VRTDA------GRRIRAAFHAGWGETLLTADYSQIEMRVMAHL 652 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---Q 449 + ++ ++A+++GEDL+ +R F+V QVT + R K + L Y G AF Q Sbjct: 653 SQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVKALSYGLVY--GLSAFGLSQ 710 Query: 450 KMASTTG 456 ++ + G Sbjct: 711 QLGISAG 717 >gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus parainfluenzae T3T1] Length = 932 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA EG +V AD + Sbjct: 655 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ +Q + AF G+D++ +T A F VA +VT +QR K + L Y Sbjct: 714 IELRIMAHLSQDQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21] gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21] Length = 892 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 7/164 (4%) Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 R LQ+ S+ P P R H +Q +T +SDP+ LQ I Sbjct: 589 RLLLQYRSISKLKSTYTDALPKLVAPATGRVHTSYNQAVTSTGRLSSSDPN-LQNIPIRG 647 Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R IA G ++ AD + IE RVLA ++G++ +AF GED++ T + F Sbjct: 648 EEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGEDIHRRTASEVFG 707 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + P VT + R KV+ + Y GA + K T F Sbjct: 708 MFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAF 751 >gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568] gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568] Length = 934 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I +R IA EG ++V AD + Sbjct: 655 PVSGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ LKAF GED++ T A F + +VT +QR K + L Y Sbjct: 714 IELRIMAHLSQDEGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus] Length = 924 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q +T +S+P+ I + +R + G KL+ AD I Sbjct: 645 PETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQI 704 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+LA ++G++ +AF G+D++ T AR F V P QVT +QR K++ + Y Sbjct: 705 ELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPY 761 >gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454] gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 927 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G +V AD + IE R++A ++G+ + AFE GED++ T + F V + Sbjct: 688 IREAFIAPPGSSIVSADYSQIELRIMAHISGDASLMAAFEHGEDVHRATASEIFGVTRQE 747 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 VT +QR I KV+ L Y G AF +AS G+ Sbjct: 748 VTSEQRRIAKVINFGLIY--GMSAF-GLASNLGI 778 >gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252] gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252] Length = 924 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q +T +S+P+ I + +R + G KL+ AD I Sbjct: 645 PETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQI 704 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+LA ++G++ +AF G+D++ T AR F V P QVT +QR K++ + Y Sbjct: 705 ELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPY 761 >gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87] Length = 687 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS------DCVRSCVIASEGKKLVVAD 380 +++ + S+ H +Q +T +SDP+ LQ IS +R +A +G KL+ AD Sbjct: 406 KHIQQDSKIHTCFNQAMTQTGRLSSSDPN-LQNISVRDEQGREIRKAFVAQKGYKLLSAD 464 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA MA E ++AF+ G D++ T + F+V+ VT D R + K + + Sbjct: 465 YSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRVAKTVNFGIV 524 Query: 441 Y 441 Y Sbjct: 525 Y 525 >gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518'] Length = 924 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q +T +S+P+ I + +R + G KL+ AD I Sbjct: 645 PETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQI 704 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+LA ++G++ +AF G+D++ T AR F V P QVT +QR K++ + Y Sbjct: 705 ELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPY 761 >gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1] Length = 880 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 97/211 (45%), Gaps = 34/211 (16%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+T LF E GL ++ +S K L + F ++ A R + KL +VE Sbjct: 535 KQLQTVLFDELGLPKTKKIKSGYTTDAASLKGLLEKTGHEFLVQLMAHRESS-KLAQMVE 593 Query: 297 AMN----SDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + D R+ T Q + A TGR S QN+P RS E Sbjct: 594 TLKKSVADDARIHTTYAQNIAA--TGRISSNNPNLQNIP--VRSEE-------------- 635 Query: 352 SDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 VRS + SEG + L+ AD + IE R++A ++G+Q ++A++ GEDL+ Sbjct: 636 ---------GRRVRSIFMVSEGYECLLSADYSQIEMRIMAHLSGDQALIQAYKDGEDLHR 686 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 AR FNV PA+VT R+ K M L Y Sbjct: 687 FVGARIFNVEPAEVTSAMRSKVKAMSYGLAY 717 >gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565] gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565] Length = 921 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q + +SDP+ LQ I +R I S G KLV AD + Sbjct: 642 PQTGRVHTSYHQAVAATGRLSSSDPN-LQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L AF G+D++ T A F VA VT D R K + L Y Sbjct: 701 IELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDMRRSAKAINFGLIY-- 758 Query: 444 GAKAF 448 G AF Sbjct: 759 GMSAF 763 >gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4] gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4] Length = 1015 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 8/140 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q+ T +S+P+ I + +RSC A+EG LV AD + IE R Sbjct: 736 GRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELR 795 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA M+ + L AF G D++ T ++ AP VT DQR K + L Y G Sbjct: 796 VLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGP-- 853 Query: 448 FQKMASTTGLNLNTFAHLVK 467 QK+ + +N ++ Sbjct: 854 -QKLGQELRITVNEAKQFIE 872 >gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922] gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922] Length = 941 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 4/96 (4%) Query: 364 VRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R IA + K++ AD + IE R++A MA + +KAF+ GED++ +T A+ F VA Sbjct: 702 IRKAFIARNPEYKIISADYSQIELRLIAQMAQDPVMVKAFQDGEDIHASTAAKIFGVALD 761 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +VT++QR+ K + + Y G AF +A TGL+ Sbjct: 762 EVTREQRSQAKTVNFGIIY--GVSAF-GLAQQTGLS 794 >gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila] Length = 893 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 25/140 (17%) Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ + G + TGR S QNLP S +E+ + I + DP+ Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +V AD + IE R+LA ++G++ LKAFE G D++ T +R FNV P Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLTASRIFNVKP 714 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT++ R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25] gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25] Length = 929 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 10/144 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q + +SDP+ LQ I +R IA +G K++ Sbjct: 645 LPEQINPRTGRIHTSYHQAVAATGRLSSSDPN-LQNIPVRTAEGRRIRQAFIAPKGYKML 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ + AF D++ T A F V VT DQR K + Sbjct: 704 AADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNT 461 L Y GA QK+ G++ T Sbjct: 764 GLIYGMGA---QKLGKDIGVDTKT 784 >gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] Length = 602 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 90/391 (23%), Positives = 156/391 (39%), Gaps = 70/391 (17%) Query: 169 REIFKRLEPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 R+ L P+S++ E++L + + G+ +DV L+ R +LD+ + Sbjct: 203 RQKLSPLVPVSARGLVGYERDLAEVCSVMERTGFLLDVDYTRKLST-----RLRLDESVA 257 Query: 224 S---LTYGL--VSSSR----CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 S L+YG V+S+ LE++ W+ T + + +T ++ + I Sbjct: 258 SEIALSYGCENVNSTDQVADVLEQMGAWIPGRTPTGKKQVNDTLLAQLAKDGNEFARSVI 317 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +A + ++ ++ ++ DGR ++ L A RT R S P Q LP Sbjct: 318 ----DAKKAGKWRKTWVDRFLQTVDPDGRCHASINPLQA-RTARMSITEIPAQTLPAGDW 372 Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +R C +A EG+ + D E RVLA ++G Sbjct: 373 ----------------------------MIRRCFLADEGELIASVDYQAQELRVLAALSG 404 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMA 452 + ++AF G+DL++ T +F +TKD +R KV+ Y GGAK ++ Sbjct: 405 DPTMIRAFAEGQDLHLLTARAAFG---DHITKDDPERKYAKVVNFGRVYGGGAKT---VS 458 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 TGL +V + ++ A R + E A++ I T RV Sbjct: 459 EQTGLGFMAAKQVV------DGFDKAYPGVRVLSHKLQEEAVKSGQIVTPTGRVLPV--- 509 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R N L Q+ + + GKA+I R Sbjct: 510 DQDRAYAALNYLIQSTSRDV-TGKALIRLHR 539 >gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710] gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579] gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149] gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33] Length = 929 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 51/99 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLITAFQNGEDVHRRTAAEVFGIAPEN 748 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K ++ TF Sbjct: 749 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKTF 787 >gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] Length = 918 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q + +SDP+ LQ I +R I S G KLV AD + Sbjct: 639 PQTGRVHTSYHQAVAATGRLSSSDPN-LQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQ 697 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L AF G+D++ T A F VA VT D R K + L Y Sbjct: 698 IELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDMRRSAKAINFGLIY-- 755 Query: 444 GAKAF 448 G AF Sbjct: 756 GMSAF 760 >gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] Length = 653 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 1/133 (0%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLA 382 P Q P R H + QI +P+ QI + RSC A +G+KL++AD + Sbjct: 378 IPAQIHPVTHRLHPKYMQIGAWSGRMSCYNPNIQQIPREADFRSCFTAPDGRKLILADYS 437 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RV A ++G+ A + GEDL+ T + ++ +QVTK QR K + L + Sbjct: 438 QIELRVAAQISGDSRMKSACQKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFG 497 Query: 443 GGAKAFQKMASTT 455 GA+ ++ A + Sbjct: 498 MGAEGLKQYAGQS 510 >gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002] gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002] Length = 887 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 LQ+ G ++ P P R H Q + +SDP+ LQ I Sbjct: 587 LQYRGLAKLKSTYTDKLPSLIRPDTGRVHTNYAQAVAITGRLSSSDPN-LQNIPVRTAEG 645 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 VR IA G ++V AD + IE R++A ++ + L AF +GED++ TT A F V Sbjct: 646 RRVREAFIAPPGHRIVSADYSQIELRIMAHLSDDANMLAAFASGEDIHKTTAAEVFGVTR 705 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QVT +QR K + L Y G AF Sbjct: 706 EQVTSEQRRAAKAINFGLIY--GMSAF 730 >gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6] gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6] Length = 951 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H +Q+ ++DP+ LQ I +R +A+ G + + AD + Sbjct: 664 PRTGRVHTTYNQVGAATGRLSSNDPN-LQNIPVRTQEGREIRRGFVAAPGHRFIAADYSQ 722 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA++ + ++AF+ G+D++ T A+ F VA QV K+QR I K + + Y Sbjct: 723 IELRVLAYITKDPNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIY-- 780 Query: 444 GAKAF 448 G AF Sbjct: 781 GISAF 785 >gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1] Length = 1015 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 8/140 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q+ T +S+P+ I + +RSC A+EG LV AD + IE R Sbjct: 736 GRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELR 795 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA M+ + L AF G D++ T ++ AP VT DQR K + L Y G Sbjct: 796 VLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGP-- 853 Query: 448 FQKMASTTGLNLNTFAHLVK 467 QK+ + +N ++ Sbjct: 854 -QKLGQELRITVNEAKQFIE 872 >gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] Length = 928 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P+ R H Q + ++DP+ LQ I VR IA G ++V Sbjct: 644 LPTLIYPQTGRVHTTYAQAVAITGRLASNDPN-LQNIPVRTAEGRRVREAFIAPAGWQIV 702 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ LKAF +GED++ T A F V A VT DQR K + Sbjct: 703 SADYSQIELRIMAHLSDDEGMLKAFASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINF 762 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 763 GLIY--GMSAF 771 >gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2] gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2] Length = 893 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 25/140 (17%) Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ + G + TGR S QNLP S +E+ + I + DP+ Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +V AD + IE R+LA ++G++ LKAFE G D++ T +R FNV P Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLTASRIFNVKP 714 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT++ R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 931 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 15/209 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q+ T +S P+ I + +R C A+ G KLV AD + IE RV Sbjct: 653 RIHTTFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNKLVAADYSQIELRV 712 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ + +++F ED++ T ++V A VT DQR K + L Y G Sbjct: 713 LAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTINFGLIYGMGP--- 769 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 QK+A + LN + E + + + +N + A E F+ T R ++ Sbjct: 770 QKLAQELKVTLNEAKEFI------ERYFSKLSHLKEFYDNVEQSAREHGFVTTLAGR-RR 822 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKA 537 + HS ++L ++ + T+ G A Sbjct: 823 LLPEIHSDNNQLRSQARRQAINTVVQGSA 851 >gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] Length = 933 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T +SDP+ LQ I +R IA +G K+V Sbjct: 649 PQMINPATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPQGYKIVA 707 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ L AF G+D++ T A F + VT +QR K + Sbjct: 708 ADYSQIELRIMAHLSGDKGLLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFG 767 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 768 LIY--GMSAF 775 >gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] Length = 922 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q T +S+P+ I + +R+C IA G+ LV AD + +E R Sbjct: 643 GRIHTTFNQKATATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELR 702 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 VLA M+ + L AF GED++ T A +++ +V+ DQR K + L Y GA+ Sbjct: 703 VLAHMSQDAALLDAFRQGEDIHARTAALIYDLQAGEVSPDQRRNAKTINFGLIYGMGAQ 761 >gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5] Length = 124 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L K G+ +Y E D ++LFA+ D+ PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAV 112 ALE+ V A N+ FER L + W C+++ + + GLP +L+ V Sbjct: 61 LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118 >gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7] gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7] Length = 946 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 11/175 (6%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 ++ L + G S+ P Q + R H Q + ++DP+ LQ I Sbjct: 641 IQNVLDYRGLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLSSTDPN-LQNIPIR 699 Query: 361 ---SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 VR I E L+ AD + IE R++A ++ E+ + AF++GED++ +T A+ Sbjct: 700 TERGRQVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMIAAFQSGEDIHASTAAKV 759 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 FNVA VT++QR+ K + + Y G AF +++ T L+ L+ T A Sbjct: 760 FNVALEDVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLSRGEAKELIDTYYA 811 >gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] Length = 928 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q IT +++P+ LQ I VR I G K+V AD + I Sbjct: 650 RSGRVHTSYHQAITATGRLSSTEPN-LQNIPIRTEQGRRVRQAFIPRPGYKIVAADYSQI 708 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ LKAF G+D++ T A FNV+ +VT +QR K + L Y G Sbjct: 709 ELRIMAHLSQDKGLLKAFSQGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINFGLIY--G 766 Query: 445 AKAF 448 AF Sbjct: 767 MSAF 770 >gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 933 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA +G K++ AD + Sbjct: 656 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQ 714 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ +Q + AF G+D++ +T A F + QVT +QR K + L Y Sbjct: 715 IELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIY-- 772 Query: 444 GAKAF 448 G +F Sbjct: 773 GMSSF 777 >gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] Length = 899 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H Q +SDP+ P++ +S +R+ +A G +L+ AD + I Sbjct: 621 PRDGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRAAFVAPPGWRLLSADYSQI 680 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA + + L+AF ED++ T A +F VA +VT D R I KV+ + Y G Sbjct: 681 ELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSDMRRIAKVLNFGIAY--G 738 Query: 445 AKAF 448 AF Sbjct: 739 LSAF 742 >gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem] gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem] Length = 892 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 7/164 (4%) Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 R LQ+ S+ P P R H +Q +T +SDP+ LQ I Sbjct: 589 RLLLQYRSISKLKSTYTDALPKLVDPATGRVHTSYNQAVTSTGRLSSSDPN-LQNIPIRG 647 Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R IA G ++ AD + IE RVLA ++G++ +AF GED++ T + F Sbjct: 648 EEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGEDIHRRTASEVFG 707 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + P VT + R KV+ + Y GA + K T F Sbjct: 708 MFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAF 751 >gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] Length = 911 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 45/78 (57%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG +L+ AD + IE R++A ++ + LKAF G+D++ T A F + P Q Sbjct: 672 IRRAFIAEEGHQLLAADYSQIELRIMAHLSQDAGLLKAFAEGQDIHRATAAEVFGLDPEQ 731 Query: 424 VTKDQRAIGKVMELALGY 441 V+ DQR K + L Y Sbjct: 732 VSGDQRRAAKAINFGLIY 749 >gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] Length = 858 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 7/114 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQIIS------DCVRSCVIASEGKKLVVADLAGIEAR 387 + H +Q +T +S+P+ LQ IS +R +A EG L+ AD + IE R Sbjct: 584 KIHTSFNQTMTQTGRLSSSEPN-LQNISIRDELGKEIRKAFVAQEGYHLLSADYSQIELR 642 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA MA E +KAF G D++ T FN +P +V + +R I K + + Y Sbjct: 643 MLAHMANEDHMIKAFNEGLDIHTKTATLIFNCSPEEVDEHKRRIAKTVNFGIVY 696 >gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519] gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii] Length = 888 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P+ R H +Q IT +++P+ P+++ I +R +A E LV AD + I Sbjct: 610 PKTGRIHSSFNQTITTTGRISSTEPNMQNIPVRLEIGRELRKVFVAPEDMYLVDADYSQI 669 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+LA +A ++ + AF G+D++ T + FNV +VTK+ R+ K + + Y Sbjct: 670 ELRILAHIANDEGLIDAFSKGDDIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVY 726 >gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002] gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002] Length = 973 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 6/132 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P+ R H + +Q +T +S+P+ I S +R I E LV AD + I Sbjct: 678 PKTDRIHTDFNQTLTSTGRLSSSNPNLQNIPVRTEFSQRIRRAFIPKENWVLVAADYSQI 737 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQG 443 E R+L ++ E L+A++ GED++ T F+ +P VT +R IGK++ + Y Sbjct: 738 ELRILTHLSQEPILLQAYQAGEDVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGM 797 Query: 444 GAKAFQKMASTT 455 GA+ F + A + Sbjct: 798 GAQRFAREAGVS 809 >gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q +T +SDP+ LQ I +R +A+ G KL+ Sbjct: 630 LPQQINPRTGRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTAEGRRIRQAFVAAPGYKLL 688 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A +A + L AF+ D++ T A F V QV+ DQR K + Sbjct: 689 AADYSQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINF 748 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 749 GLIY--GMSAF 757 >gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] Length = 955 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 39/276 (14%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS----RCLE 237 E L Y+ + G V AL + LN + +++ + L G V+ ++ Sbjct: 540 ELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVK 599 Query: 238 KLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQ--------AIQVFNNRMRASR 285 +L+T LF GL ++ T + V K++P+ A+Q + + ++ + Sbjct: 600 QLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQ 659 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L +A +DGR+ T Q AS TGR S QN+P + + Sbjct: 660 T----VEGLQKAAVADGRVHTTFQQNAAS-TGRLSSTAPNLQNIPIRTDEGRRIRGAFIV 714 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 P I D V E + L+ AD + IE R++ +A ++ ++A+ G Sbjct: 715 APK-----------ILDGV-------EYEGLLTADYSQIEMRIMVHLAADEKLIQAYADG 756 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 EDL+ + F VAP +VT RA K M L Y Sbjct: 757 EDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAY 792 >gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 933 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA +G K++ AD + Sbjct: 656 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQ 714 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ +Q + AF G+D++ +T A F + QVT +QR K + L Y Sbjct: 715 IELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIY-- 772 Query: 444 GAKAF 448 G +F Sbjct: 773 GMSSF 777 >gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 922 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 9/122 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q + +SDP+ LQ I +R+ IA G LV AD + IE Sbjct: 647 GRVHTSYAQAVAVTGRLASSDPN-LQNIPVRTAEGRRIRAAFIAPPGSSLVSADYSQIEL 705 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++ + L+AF GED++ T A F V P V DQR + KV+ L Y G Sbjct: 706 RIMAHLSEDARLLEAFAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIY--GMS 763 Query: 447 AF 448 AF Sbjct: 764 AF 765 >gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] Length = 929 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 10/141 (7%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q + +SDP+ LQ I +R IA G KL+ Sbjct: 645 LPEQINPRTGRIHTSYHQAVASTGRLSSSDPN-LQNIPVRTAEGRRIRQAFIAPPGYKLL 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ L AF D++ T A F V VT DQR K + Sbjct: 704 AADYSQIELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLN 458 L Y GA QK+ G++ Sbjct: 764 GLIYGMGA---QKLGKDIGVD 781 >gi|313631120|gb|EFR98660.1| DNA polymerase [Listeria seeligeri FSL N1-067] Length = 80 Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 PD ++S +R+ IA +G + D + IEARV+AW+AGEQW+L F + +Y + Sbjct: 7 PD---VLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASA 63 Query: 414 ARSFNVAPAQVTKDQR 429 ++ F++ +V K+ R Sbjct: 64 SQMFHIPIEEVDKNLR 79 >gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72] gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72] Length = 918 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA +V AD + IE R++A ++G+ L+AF GED++ T A F VAP++ Sbjct: 679 IRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLLEAFAEGEDVHRATAAEVFGVAPSE 738 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQK 450 V+ +QR KV+ L Y A K Sbjct: 739 VSSEQRRYAKVINFGLIYGMSAHGLAK 765 >gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 901 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEG-KKLVVADLAGIEA 386 R H +QI+ + P+ P++ + +R + G + L+ AD + IE Sbjct: 624 GRIHTTFNQIVAATGRLSSEKPNLQNIPIRTVEGRRIRQGFVVGPGYETLLTADYSQIEL 683 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++G++ + AFE+G D + TT AR F++ P QVT + RA K M L Y Sbjct: 684 RIMAHLSGDESLIAAFESGHDFHKTTAARVFDIEPEQVTGEMRAKIKAMNYGLAY 738 >gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622] gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622] Length = 908 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L+TL + +DGR+ T A+ TGR S QN+P + Sbjct: 622 LDTLPTLVAADGRIHTTYH-QAATATGRLSSTDPNLQNIP-------------------V 661 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +D + +R +A+EG +LV AD + +E R+LA +A + ++AF ED++ Sbjct: 662 RTD------LGREIRRAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHT 715 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T A F VA QV ++QR + K++ + Y Sbjct: 716 RTAAEVFGVAKEQVDREQRRVAKMVNFGIAY 746 >gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2] Length = 935 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q IT ++DP+ LQ I VR + EG K+V AD + I Sbjct: 657 RTGRVHTSYHQAITATGRLSSTDPN-LQNIPIRNEEGRKVRQAFVPREGYKIVAADYSQI 715 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ L AF G D++ T A F V +VT +QR K + L Y G Sbjct: 716 ELRIMAHLSGDEGLLDAFAHGRDIHKATAAEVFGVTLDEVTTEQRRSAKAINFGLIY--G 773 Query: 445 AKAF 448 AF Sbjct: 774 MSAF 777 >gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14] gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14] Length = 937 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P PR +R H Q + +++P+ LQ I VR A +G +V Sbjct: 645 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180] gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180] Length = 911 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T +SDP+ LQ I +R IA+ G +L+ AD + IE Sbjct: 636 GRVHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRRIRRAFIAASGHRLLAADYSQIEL 694 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++G++ L AF G+D++ T A +AP VT +QR K + L Y G Sbjct: 695 RIMAHLSGDERLLAAFAGGQDIHRATAAEILGLAPEDVTGEQRRSAKAINFGLIY--GMS 752 Query: 447 AF 448 AF Sbjct: 753 AF 754 >gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] Length = 901 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD--PLQIISD---CVRSCVIASEGKKLVVADLAGI 384 P R H Q +T +SDP+ + I SD +R IA EG ++ AD + I Sbjct: 623 PDSKRVHTSYHQAVTSTGRLSSSDPNLQNIPIRSDEGRRIRQAFIAEEGYSILAADYSQI 682 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ +AF+ +D++ T A F+VAP V ++QR K + L Y G Sbjct: 683 ELRIMAHLSQDERLQRAFQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIY--G 740 Query: 445 AKAF 448 AF Sbjct: 741 MSAF 744 >gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] Length = 929 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 12/139 (8%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q + +SDP+ LQ I +R I G ++V AD + I Sbjct: 652 KTGRVHTSYAQAVAVTGRLASSDPN-LQNIPIRTPEGRRIREAFITPAGSRIVSADYSQI 710 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ LKAF GED++ T A F+VA V+ +QR KV+ L Y G Sbjct: 711 ELRIMAHLSGDEGLLKAFAAGEDIHRATAAEVFSVALDAVSSEQRRYAKVINFGLIY--G 768 Query: 445 AKAFQKMASTTGLNLNTFA 463 A+ A LN+ T A Sbjct: 769 MSAYGLAAQ---LNIETSA 784 >gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92] gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92] Length = 922 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R IA EG K+V AD + Sbjct: 644 PGTGRIHTSYHQAVTATGRLSSTDPN-LQNIPVRTQEGRRIRHAFIAPEGYKVVAADYSQ 702 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ +Q L AF G D++ T A F V QV+ DQR K + L Y Sbjct: 703 IELRIMAHLSQDQGLLDAFSKGADIHRATAAEVFKVELDQVSDDQRRSAKAINFGLIY-- 760 Query: 444 GAKAF 448 G AF Sbjct: 761 GMSAF 765 >gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG] gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG] Length = 930 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA +G +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARKGYSIVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G+Q + AF G+D++ +T A F V+ +VT +QR K + L Y G A Sbjct: 716 IMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY--GMSA 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501] gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501] Length = 931 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q +T +SDP+ LQ I +R +A+ G KL+ Sbjct: 647 LPQQINPRTGRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTAEGRRIRQAFVAAPGYKLL 705 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A +A + L AF+ D++ T A F V QV+ DQR K + Sbjct: 706 AADYSQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINF 765 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 766 GLIY--GMSAF 774 >gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187] gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187] Length = 910 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I +R +A G K+V AD + Sbjct: 631 PSTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRTEEGRRIRQAFVADHGYKIVAADYSQ 689 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L+AF G+D++ T A N+ P VT +QR K + L Y Sbjct: 690 IELRIMAHLSEDDGLLQAFAHGQDIHRATAAEIMNITPEAVTSEQRRNAKAINFGLIY-- 747 Query: 444 GAKAF 448 G AF Sbjct: 748 GMSAF 752 >gi|332701547|ref|ZP_08421635.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay] gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay] Length = 882 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 97/417 (23%), Positives = 152/417 (36%), Gaps = 118/417 (28%) Query: 234 RCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 R ++L LF GL + T ++T VL + P + RM + Sbjct: 536 RSNQQLAQLLFDRLGLKAKGKTPGGAQSTANPVLEKLRNEHPVVADILEFRMLEKLRSTY 595 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L L + + GR+ T L A+ TGR S QN+P Sbjct: 596 -LEPLPKLADEQGRIHTTFNQL-ATATGRLSSSAPNLQNIP------------------- 634 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 P ++ R+C A G L AD + IE RVLA M+ + L+AF G+D++ Sbjct: 635 -IRGPQGTRM-----RACFTAGPGCLLAAADYSQIELRVLAHMSQDPTLLEAFRHGQDIH 688 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T F+ QV D+R K + L Y G QK+A+ G+ L Sbjct: 689 ARTAGLIFDKDAGQVAPDERRSAKTINFGLLYGMGP---QKLAAELGIAL---------- 735 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A+ F IE F+G S++ E ++ + + E Sbjct: 736 ------AQAKEF------------IERYFVGL-------------SKLKEFYDSIVKEAE 764 Query: 530 QTIENGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 Q NG + + +RR +P ++ + D NL ++ R N R Sbjct: 765 Q---NGSVVTMLGRRRLLPDIHSRND--NL-------KAQAVRQAINTR----------- 801 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ A G ++L VHDE++ ETP+ Sbjct: 802 -------------IQGSAADIIKLAMIRAHADEKIRALGGRLILQVHDELLLETPEA 845 >gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] Length = 908 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I +EG + L+ D + IE R++A ++G++ ++AF++GEDL+ T AR FNV P Sbjct: 667 IRQGFIVTEGFETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFNVEPG 726 Query: 423 QVTKDQRAIGKVMELALGY 441 V +QR K M L Y Sbjct: 727 SVDAEQRRRIKAMSYGLAY 745 >gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] Length = 930 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 50/99 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 748 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ F Sbjct: 749 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 787 >gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1] gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1] Length = 893 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 25/140 (17%) Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ + G + TGR S QNLP S +E+ + I + DP+ Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +V AD + IE R+LA ++G++ L+AFE G D++ T +R FNV P Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT++ R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] Length = 879 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 126/288 (43%), Gaps = 55/288 (19%) Query: 188 LDQTINDRG-----YCVDVALAHTLNQI----VDVERTKLDQ---ELESLTYGLVSSSRC 235 ++Q + D G + ++V L H L ++ + V++ L++ + E+ V+++R Sbjct: 462 MNQELTDAGQAELYFSMEVPLTHILAEMEARGIAVDKAALEELAADYEAQIADEVTAARE 521 Query: 236 L-----------EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 L ++L+ LF + GL T+T + +KL Q F N + A Sbjct: 522 LAEDDQLNLSSPKQLQKVLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAH 581 Query: 285 R---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R ++ L+ A++ DGR+R T GA+ TGR S QN+P + + + Sbjct: 582 REYQKMKSTIDGLINAIDGDGRIRTTFNQKGAA-TGRLSSSEPNLQNIPVRTEAGRK--- 637 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLK 400 +RS EG + L+ AD + IE RV+A ++ + ++ Sbjct: 638 ----------------------IRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIE 675 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A+ GEDL+ +R F+V +VT + R K + L Y G AF Sbjct: 676 AYRAGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVY--GLSAF 721 >gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] Length = 901 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 29/150 (19%) Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L++A+ DGR+ TL Q + A TGR S QN+P R+ E Sbjct: 616 LIKAVADDGRIHTTLHQTITA--TGRLSSVDPNLQNIP--VRTDE--------------- 656 Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + EG +L+ AD + IE R++A ++ ++ ++AF +G D + Sbjct: 657 --------GRRIREAFVVGEGYAELMTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAA 708 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T AR F+V P +VT +QRA K M L Y Sbjct: 709 TAARVFDVDPTEVTGEQRAKIKAMNYGLAY 738 >gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] Length = 881 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII---SDC---VRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I S+ +R IA +G +++ AD + Sbjct: 580 PHTGRIHTSYHQAVTSTGRLSSSDPN-LQNIPVRSEAGRRIRRAFIAEDGWQILAADYSQ 638 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L AF G+D++ T A F VAP V+++QR K + L Y Sbjct: 639 IELRIMAHLSADPGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIY-- 696 Query: 444 GAKAF 448 G AF Sbjct: 697 GMSAF 701 >gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126] Length = 930 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q +T ++DP+ LQ I VR + EG K V AD + I Sbjct: 652 RTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRVRQAFVPREGNKFVAADYSQI 710 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ L AF G+D++ T A F V +VT +QR K + L Y G Sbjct: 711 ELRIMAHLSGDKGLLDAFAHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIY--G 768 Query: 445 AKAF 448 AF Sbjct: 769 MSAF 772 >gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP] gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP] Length = 962 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA +G K+V AD + IE R Sbjct: 689 RVHTSYHQAVTTTGRLSSSDPN-LQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELR 747 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++A +A ++ + AF G+D++ T A F ++ A+VT +QR K + L Y Sbjct: 748 IMAHLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLIY 801 >gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20] gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 957 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R IA +G K+V AD + I Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796 >gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] Length = 903 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 24/170 (14%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q T +S+P+ I + +R IA G L+ D + I Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQI 684 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + RVLA ++ + ++AF++ +D++ T AR NV+P++VTK+QR + K + + Y Sbjct: 685 DLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNVSPSKVTKEQRRLAKTVNFGVIYG-- 742 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 S+ GL T L E+A+ F + E +P A+ Sbjct: 743 -------MSSYGLEQATELSL----------EEADKFIKAYFEKYPRVAV 775 >gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567] gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567] Length = 955 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 39/276 (14%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS----RCLE 237 E L Y+ + G V AL + LN + +++ + L G V+ ++ Sbjct: 540 ELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVK 599 Query: 238 KLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQ--------AIQVFNNRMRASR 285 +L+T LF GL ++ T + V K++P+ A+Q + + ++ + Sbjct: 600 QLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQ 659 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L +A +DGR+ T Q AS TGR S QN+P + + Sbjct: 660 T----VEGLQKAAVTDGRVHTTFQQNAAS-TGRLSSTAPNLQNIPIRTDEGRRIRGAFIV 714 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 P + D V E + L+ AD + IE R++ +A ++ ++A+ G Sbjct: 715 APK-----------VLDGV-------EYEGLLTADYSQIEMRIMVHLAADEKLIQAYADG 756 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 EDL+ + F VAP +VT RA K M L Y Sbjct: 757 EDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAY 792 >gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10] gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10] Length = 893 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 25/140 (17%) Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ + G + TGR S QNLP S +E+ + I + DP+ Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +V AD + IE R+LA ++G++ L+AFE G D++ T +R FNV P Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT++ R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181] gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181] Length = 904 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 5/122 (4%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q I +SDP+ P++ + VR IA +G K++ AD + IE R+ Sbjct: 629 RVHTSYNQAIAITGRLASSDPNLQNIPIRTVEGRKVREAFIAPDGSKILSADYSQIELRI 688 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ + AF+ ED++ T FN+ + V+ +QR KV+ L Y G Sbjct: 689 MAHLSKDKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKVINFGLIYGMGVYGL 748 Query: 449 QK 450 K Sbjct: 749 AK 750 >gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] Length = 942 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 42/222 (18%) Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G+ + L KLK+ + T LE+L++ L P A + R + ++ Sbjct: 600 GIDPRAHGLSKLKSGGYSITAEVLEELSQ------------LYPIAADILTYR-QLTKLK 646 Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ L + +N GR+ + LGA+ TGR S QN+P + E Sbjct: 647 STYIDALPDLVNPRTGRIHTSYNQLGAA-TGRLSSNNPNLQNIPVRTEEGRE-------- 697 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +R +A G + V AD + IE RVLA M+G++ + AF+ G Sbjct: 698 -----------------IRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGL 740 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 D++ T +R F V P V K+QR + K + + Y G AF Sbjct: 741 DIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIY--GISAF 780 >gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T] gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T] Length = 939 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 7/127 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q +S+P+ LQ I +R+ IA +V AD + Sbjct: 661 PRTGRVHTSFSQATAVTGRLSSSEPN-LQNIPIRTPEGRRIRAAFIAPRDHLIVSADYSQ 719 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L+AF GED++ T F VAPA+VT +QR KV+ L Y Sbjct: 720 IELRIMAHLSDDARLLEAFARGEDVHRATAGEVFGVAPAEVTSEQRRYAKVINFGLIYGM 779 Query: 444 GAKAFQK 450 A K Sbjct: 780 SAHGLAK 786 >gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8] gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8] Length = 893 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 25/140 (17%) Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 GR+ + G + TGR S QNLP S +E+ + I + DP+ Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPTKSEEGKEIRKAI------VPQDPNWW---- 668 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +V AD + IE R+LA ++G++ L+AFE G D++ T +R FNV P Sbjct: 669 --------------IVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT++ R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5] gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5] Length = 595 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 123/487 (25%), Positives = 187/487 (38%), Gaps = 109/487 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69 +D G+ Y++ L FG D PVEL D + V ++ AL+ +V Sbjct: 40 VDTETTGLDIYSDTFECRLVQFGTQDEAWVVPVELGDVFIEDV--RIAIGALKR----MV 93 Query: 70 AHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 N+ F+ VL CF +++ R + T +LA+ P +A G L + Sbjct: 94 LQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVD-PRPFEAGGFGHSL--------E 144 Query: 128 ELIARFCKGETHEC-------LYDRNKPNHREAWR---LFGE----YCKGDVTVTREIFK 173 ELIA+F + E L +K + W LF Y D T + K Sbjct: 145 ELIAKFISEDQAENVKKLMAKLAAEHKTTKAKIWSTIDLFHPEYLLYAGMDTIFTARVCK 204 Query: 174 RLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-ES 224 L PL E ++ + I+ +G+ +DV + +L E+ DQE+ E+ Sbjct: 205 SLTPLVPDVSRSLVPYEHKISEICSYIDRQGFLLDVEYSRSL-----AEKWLADQEVWEA 259 Query: 225 LT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + YG V E L L E G+ + TET ++V N L + ++ N + Sbjct: 260 IAFTEYG-VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQV---NAALLDKLVED-GNEL 313 Query: 282 RASRSAVLKLNT--------LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 A KL ++ +S+ R + L A RT R S P Q LP Sbjct: 314 AAIAQEAKKLGKWRKTWVQKFIDTRDSEDRCHTFINPLQA-RTSRMSITGIPAQTLPS-- 370 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWM 392 SD VR C IA G + D E RVLA + Sbjct: 371 ---------------------------SDWIVRRCFIAEPGDVMASVDYQAQELRVLAAL 403 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ ++AFE G DL+ T A + R +GK Y GGAKA +A Sbjct: 404 SGDRNMIEAFENGADLHQMT---------ADAAQVPRKVGKTANFQKVYGGGAKA---LA 451 Query: 453 STTGLNL 459 G+++ Sbjct: 452 EAVGISI 458 >gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703] gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703] Length = 938 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 50/99 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F AP Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K S ++ F Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLSIDNISAKNF 788 >gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] Length = 900 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 45/78 (57%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A+ GK LV AD + IE R+LA MAG+Q ++ F +G D++ T ++ F V P Q Sbjct: 661 LREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIEGFHSGADIHTITASQVFGVTPDQ 720 Query: 424 VTKDQRAIGKVMELALGY 441 VT R K + + Y Sbjct: 721 VTPQMRRSAKAVNFGIVY 738 >gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13] gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13] Length = 933 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I +R IA EG ++V AD + Sbjct: 654 PFSGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQ 712 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ LKAF G+D++ T A F V +VT +QR K + L Y Sbjct: 713 IELRIMAHLSQDEGLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIY-- 770 Query: 444 GAKAF 448 G AF Sbjct: 771 GMSAF 775 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLA 382 F P P R H QI +P+ QI D R+C A G+KL++AD + Sbjct: 303 FTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNIQQIPRDSEFRACFAAPPGRKLILADYS 362 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RV A ++G+ + A++ GEDL++ T + + A++T +R K + L + Sbjct: 363 QIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNFGLIFG 422 Query: 443 GGAKAFQKMA 452 GA Q+ A Sbjct: 423 MGAPGLQQYA 432 >gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424] gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 939 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 10/143 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q +++P+ LQ I +R IA G +V AD + Sbjct: 661 PRTGRVHTSYGQATAVTGRLASTEPN-LQNIPVRTDEGRRIREAFIAEPGSVIVSADYSQ 719 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L+AF GED++ T A F V V+ +QR KV+ L Y Sbjct: 720 IELRIMAHISGDENLLRAFANGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIY-- 777 Query: 444 GAKAFQKMASTTGLNLNTFAHLV 466 G AF +AS G+ + H + Sbjct: 778 GMSAF-GLASNLGIERDAARHYI 799 >gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 878 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 43/255 (16%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFL------E 246 G+ D + L + +D + +L QE+ L+ + + S+ + E L L L + Sbjct: 496 GFVTDRKVLEELKEGIDADIDELTQEIYELSGSEFNINSTKQLGEVLFKDLELPVIKKTK 555 Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 TG T+ + L ++ P+ I+ + + RS ++ L +A++ DGR+R Sbjct: 556 TGFS----TDASVLEKLRDKHQIIPK-IERYRELFKL-RSTYIE--GLEKAIDYDGRIRS 607 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 T + + TGR S QNLP I +D L +R Sbjct: 608 TFR-QNIAATGRLSSQDPNLQNLP-------------------IKTDEGRL------IRK 641 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 A EGK L+ AD + IE R+LA ++G++ + AF +D++ T ++ F+ +VTK Sbjct: 642 AFKAEEGKILIDADYSQIELRILASLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTK 701 Query: 427 DQRAIGKVMELALGY 441 QR+ K + + Y Sbjct: 702 RQRSEAKAVNFGIIY 716 >gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146] gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146] Length = 930 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII---SD---CVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I SD +R IA G ++V AD + Sbjct: 652 PLTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L+AF G+D++ T A F + V+ DQR K + L Y Sbjct: 711 IELRIMAHLSGDKGLLQAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] Length = 916 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +SDP+ I + V++ A EG + D + IE R Sbjct: 641 GRVHTTYNQTITATGRLSSSDPNLQNIPTRSELGRTVKTAFSAGEGSVFLAVDYSQIELR 700 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++G++ ++AF GED + T AR F V ++VT D R+ K + + Y G +A Sbjct: 701 LLAHLSGDEHLVRAFNEGEDFHAETAARVFGVPVSEVTPDLRSRAKAVNFGIVY--GQQA 758 Query: 448 F 448 + Sbjct: 759 Y 759 >gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 957 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R IA +G K+V AD + I Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796 >gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090] gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2] gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090] gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] Length = 930 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P PR +R H Q + +++P+ LQ I VR A G +V Sbjct: 645 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF++GED++ T A F AP V+ +QR K + Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62] gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62] Length = 930 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P PR +R H Q + +++P+ LQ I VR A G +V Sbjct: 645 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF++GED++ T A F AP V+ +QR K + Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1] gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1] Length = 947 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 10/144 (6%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382 LPR R H Q + ++DP+ LQ I VR IA+ G + AD + Sbjct: 668 LPRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFIAAPGHVIASADYS 726 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G++ L+AF G D++ T + FNV QV+ +QR KV+ L Y Sbjct: 727 QIELRIMAHLSGDESLLRAFHEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIY- 785 Query: 443 GGAKAFQKMASTTGLNLNTFAHLV 466 G +F +A G+ A + Sbjct: 786 -GMSSF-GLAKNLGIETKAAAAYI 807 >gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60] Length = 930 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII---SD---CVRSCVIASEGKKLVV 378 PQ + P R H Q +T +SDP+ LQ I SD +R IA G ++V Sbjct: 647 PQMVNPLTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRSDEGRRIRQAFIAPAGSRIVA 705 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ L AF G+D++ T A F + V+ DQR K + Sbjct: 706 ADYSQIELRIMAHLSGDKGLLAAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFG 765 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 766 LIY--GMSAF 773 >gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000] gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000] Length = 946 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L F G ++ P P+ R H Q ++DP+ LQ I Sbjct: 638 LDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEG 696 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G +V AD + IE R++A ++ ++ L+AF G+D++ T A F V P Sbjct: 697 RRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFREGQDVHRATAAEVFGVTP 756 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +VT +QR KV+ L Y G AF +AS G+ Sbjct: 757 LEVTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 790 >gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1] gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1] Length = 938 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 85/356 (23%), Positives = 136/356 (38%), Gaps = 92/356 (25%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV 378 P Q PR R H +Q + +SDP+ I + VR+ IA EG L+ Sbjct: 650 LPQQVNPRTGRVHTRFNQTGSVTGRLASSDPNLQNIPTRTDLGRQVRNAFIADEGWVLLS 709 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + IE R++A +A ++ L AF G+D++ T A + V VT++ R K + Sbjct: 710 VDYSQIELRIVAHVANDEAMLAAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFG 769 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y G AF GL + SA +AENF + E P Sbjct: 770 LIY--GMSAF-------GL----------SRSADLTLAEAENFVKAYFEQFP-------- 802 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +R R++ +R E +E ++ R+R Y KN Sbjct: 803 ---GVKRFLDDLRRRAAR------------EGYVET---LLGRRR------YFPNLKN-- 836 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM---- 614 P+ +L R+ R +N +Q + DI+ M Sbjct: 837 ----PANPALKARE---EREAINAP------------------IQGTAADIIKLAMIRLP 871 Query: 615 --MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + A + ++L VHDE+V E P + A ++ H+M + ++ +PL E Sbjct: 872 EALRAAGSRARLLLQVHDELVLEVPREEMPGTAKLVQHVMET--AYPLQIPLTTEA 925 >gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] Length = 1003 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 35/276 (12%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTL--------NQIVDVERTKLDQELESLTYGLVSSS 233 E L Y+ + G V AL L NQ D RT + +++ + Sbjct: 584 ELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQDAARTIIGDTVQTDDGEEPLNL 643 Query: 234 RCLEKLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++L+T LF + L ++ T + V K++P++ A+ + Sbjct: 644 ASVKQLQTVLFDKLALPHTRKIKSGYSTDAESVTELLAKISPESDGAAFLGALAAYRDNI 703 Query: 290 KLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 KL VE + DGR+ T Q GA+ TGR S QN+P + + Sbjct: 704 KLVQTVEGLQKAAADDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRTEEGRRIRGAFIV 762 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 P + D V E + L+ AD + IE R++ +A ++ + A+E G Sbjct: 763 APAPV-----------DGV-------EYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAG 804 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 EDL+ + F VAP +VT +QR+ K M L Y Sbjct: 805 EDLHRYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAY 840 >gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 919 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R IA +G K+V AD + I Sbjct: 643 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 701 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 702 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 758 >gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 957 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R IA +G K+V AD + I Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796 >gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02] gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18] gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140] gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19] gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11] gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18] gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1] gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1] gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332] gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679] gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035] gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae TCDC-NG08107] Length = 908 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P PR +R H Q + +++P+ LQ I VR A G +V Sbjct: 623 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 681 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF++GED++ T A F AP V+ +QR K + Sbjct: 682 SADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 741 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 742 GLIYGMGQYGLAKSLGIDNLSAKNF 766 >gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231] gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231] Length = 898 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + +SDP+ LQ I +R IA +G +L+ D + Sbjct: 620 PRTGRVHTSYRQAVAATGRLSSSDPN-LQNIPVRSPEGRRIRRGFIARQGYRLLAVDYSQ 678 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E R++A +G++ +AF GED++ T A F A QVT +QR K + L Y Sbjct: 679 VELRIMAHFSGDERLHRAFAAGEDIHRATAAEVFATALEQVTAEQRRAAKAINFGLIY-- 736 Query: 444 GAKAFQKMASTTGLNLNTFAHLVK 467 G A+ +A G+ + H V+ Sbjct: 737 GMSAY-GLARQLGIERDAAQHYVE 759 >gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] Length = 918 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EGKK++ AD + IE R++A ++ ++ L AF G+D++ T A F+V ++ Sbjct: 678 IRHAFIAPEGKKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSE 737 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT DQR K + L Y G AF Sbjct: 738 VTTDQRRRAKAVNFGLIY--GMSAF 760 >gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 957 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R IA +G K+V AD + I Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796 >gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1] gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1] Length = 888 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 18/218 (8%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R SR H L+ + T +S+P+ LQ I +R+C A G +LV AD + I Sbjct: 611 RDSRIHTTLNNMATATGRLSSSNPN-LQNIPIRGEFGRRMRACFTAGPGNRLVAADYSQI 669 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA ++GE L AF G D++ T A F+ + D+R K + L Y G Sbjct: 670 ELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEAIAPDERRQAKTINFGLLYGMG 729 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 QK++ G+ L+ + +E + E E A D F+ T Sbjct: 730 P---QKLSRDLGIKLDAAKAFIA-----RYFERLPGLSAFY-EGIVEAAKRDGFVTTLAG 780 Query: 505 RVKKAWRQKHSRVSELWNEL-HQAFEQTIENGKAIIAR 541 R ++ S S+L ++ QA ++ G A I + Sbjct: 781 R-RRLLPDIGSANSQLSSQARRQAINTVVQGGAADIIK 817 >gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134] gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134] Length = 941 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 3/103 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IAS G +V AD + IE R++A ++G++ L+AF GED++ T + F V Sbjct: 702 IREAFIASPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATASEIFGVDREA 761 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 V+ +QR KV+ L Y G AF +AS G+ H + Sbjct: 762 VSSEQRRYAKVINFGLIY--GMSAF-GLASNLGIEREAAKHYI 801 >gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] Length = 914 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 30/178 (16%) Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P AI N + + V KL+TL+ +DGR+ + + TGR S QN+P Sbjct: 610 PAAIIAQRNLSKLKSTYVDKLSTLINP--ADGRIHTSFN-QTVTATGRLSSSNPNLQNIP 666 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R+ E +R IA+ G + + AD + I+ RVLA Sbjct: 667 --VRTQE-----------------------GRRIRGAFIAAPGHRFLAADYSQIDLRVLA 701 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + + L+AF+ +D++ T A F V PA VT D R + K + + Y G AF Sbjct: 702 HYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVAKTINFGIIY--GMSAF 757 >gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173] Length = 169 Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 1/107 (0%) Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 DP+ LQ I +R A EG V+AD + IE R+ A GE +KAF+ G DL+ T Sbjct: 1 DPN-LQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYT 59 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + +TK++R + K + L Y AK + A+T G++L Sbjct: 60 ASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDL 106 >gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15] Length = 959 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q ++DP+ LQ I +R +A G +V AD + Sbjct: 673 PQTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQ 731 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L+AF G+D++ T A F V P +VT +QR KV+ L Y Sbjct: 732 IELRIMAHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIY-- 789 Query: 444 GAKAFQKMASTTGLN 458 G AF +AS G+ Sbjct: 790 GMSAF-GLASNLGIG 803 >gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4] gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4] Length = 901 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 10/150 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q +T +SDP+ LQ I +R IA G L+ Sbjct: 617 LPLQVNPRTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRSAEGRRIRQAFIAPPGYCLL 675 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ L AFE GED++ T A F VT +QR K + Sbjct: 676 AADYSQIELRIMAHLSDDEGLLAAFEAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINF 735 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L Y A +A G++ + H ++ Sbjct: 736 GLIYGMSAHG---LAQQLGISRSAAQHYIE 762 >gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491] gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491] Length = 938 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 50/99 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K ++ F Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 788 >gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640] gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06] Length = 932 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P PR R H Q + ++P+ LQ I VR A G +V Sbjct: 646 LPEMISPRDKRVHTTYAQAVAITGRLAGNNPN-LQNIPIRTEEGRKVRRAFTAPPGSVIV 704 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F +AP V+ +QR K + Sbjct: 705 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINF 764 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 765 GLIYGMGQYGLAKSLGIDNLSAKNF 789 >gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] Length = 944 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L F G ++ P P+ R H Q ++DP+ LQ I Sbjct: 636 LDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPN-LQNIPVRTEEG 694 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G +V AD + IE R++A ++ ++ ++AF G+D++ T A F V P Sbjct: 695 RRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLMRAFREGQDVHRATAAEVFGVTP 754 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +VT +QR KV+ L Y G AF +AS G+ Sbjct: 755 LEVTAEQRRYAKVINFGLIY--GMSAF-GLASNLGIG 788 >gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT] gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT] Length = 951 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I C+R IA +G K++ AD + I Sbjct: 676 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIKNEEGHCIRQAFIARKGYKIIAADYSQI 734 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ + + AF G+D++ +T A F + +VT +QR K + L Y G Sbjct: 735 ELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIY--G 792 Query: 445 AKAF 448 +F Sbjct: 793 MSSF 796 >gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442] gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442] Length = 930 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 50/99 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K ++ F Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 788 >gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102] gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102] Length = 930 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 50/99 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 690 VRRAFTAPQGSIIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K ++ F Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 788 >gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594] Length = 938 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 50/99 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K ++ F Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 788 >gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069] gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069] Length = 915 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%) Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R+ IA +G K++ AD + IE R++A ++ ++ LKAFE G D++ T A F+V Sbjct: 676 SIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEGLLKAFEEGLDVHSATAAEVFDVPLD 735 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +VT +QR K + L Y G AF +A + NT + T Sbjct: 736 EVTSNQRRNAKAINFGLIY--GMSAF-GLAKQIDTDRNTAQDYINT 778 >gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 952 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H +Q +T +SDP+ LQ I +R +A EG K+V AD + I Sbjct: 676 KTGRVHTSYNQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQI 734 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ + AF G+D++ T A F V +VT +QR K + L Y G Sbjct: 735 ELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIY--G 792 Query: 445 AKAF 448 +F Sbjct: 793 MSSF 796 >gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 952 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H +Q +T +SDP+ LQ I +R +A EG K+V AD + I Sbjct: 676 KTGRVHTSYNQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQI 734 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ + AF G+D++ T A F V +VT +QR K + L Y G Sbjct: 735 ELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIY--G 792 Query: 445 AKAF 448 +F Sbjct: 793 MSSF 796 >gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737] Length = 830 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 51/322 (15%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKRLEPLSSKEQELWYLDQTIND--- 194 L D N R +G K D ++ +++ L P ++E+ L +L + + Sbjct: 377 LLDPGNTNPEGVARRYGGEWKEDAAARALLSERLWQALYPRVAEEERLLWLYREVERPLA 436 Query: 195 --------RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 G +DV L+Q V E +L+ E+ L G + ++L+ LF E Sbjct: 437 QVLAHMEATGVRLDVPYLEALSQEVAFELERLEAEVHRLA-GHPFNLNSRDQLERVLFDE 495 Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 GL TE T +R ++ +AVL+L L EA GR+ Sbjct: 496 LGLPPIGKTEKTGKR---------------------STSAAVLEL--LREAHPIVGRILE 532 Query: 307 TLQFLGASRTGRWSGCVFPPQNL--PRPSRSHEELDQIITHLPTSITSDPDPLQI----- 359 + + T + P L P+ R H +Q T +SDP+ I Sbjct: 533 YRELMKLKST-----YIDPLPRLVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTP 587 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 + +R IA EG LV D + IE RVLA ++G++ ++ F G+D++ T A F V Sbjct: 588 LGQRIRKAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGV 647 Query: 420 APAQVTKDQRAIGKVMELALGY 441 P V R K + + Y Sbjct: 648 PPEGVDGAMRRAAKTVNFGVLY 669 >gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970] gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970] Length = 939 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P PR R H Q + ++P+ LQ I VR A G +V Sbjct: 646 LPEMISPRDKRVHTTYAQAVAITGRLAGNNPN-LQNIPIRTEEGRKVRRAFTAPPGSVIV 704 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F +AP V+ +QR K + Sbjct: 705 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINF 764 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 765 GLIYGMGQYGLAKSLGIDNLSAKNF 789 >gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] Length = 952 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H +Q +T +SDP+ LQ I +R +A EG K+V AD + I Sbjct: 676 KTGRVHTSYNQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQI 734 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ + AF G+D++ T A F V +VT +QR K + L Y G Sbjct: 735 ELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIY--G 792 Query: 445 AKAF 448 +F Sbjct: 793 MSSF 796 >gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 852 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 105/253 (41%), Gaps = 31/253 (12%) Query: 192 INDRGYCVDVALAHTLNQIVDVE-RTKLDQ--ELESLTYGLVSSSRCLEKLKTWLFLETG 248 + +G +D A+ TL+ VD E TKL L + + S+ + + L L L Sbjct: 466 MEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLPI- 524 Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 L +T Q VL + P + R S+ L+TL + DGR+ T Sbjct: 525 LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKLKSTYLDTLPGLVAKDGRIHTTY 583 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + T L I R Sbjct: 584 H-QAATATGRLSSSDPNLQNIP-----------VRTELGREI--------------RRAF 617 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A G +LV AD + +E R+LA +A + L AF+ ED++ T A F V P +V +DQ Sbjct: 618 VAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQ 677 Query: 429 RAIGKVMELALGY 441 R + K + + Y Sbjct: 678 RRVAKTVNFGIAY 690 >gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304] Length = 937 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 50/99 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 748 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K ++ F Sbjct: 749 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 787 >gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 939 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 691 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 750 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ F Sbjct: 751 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 789 >gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment'] Length = 873 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q +T +S+P+ I + +R +ASEG +L+ AD + IE R Sbjct: 597 GRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEVGRRIRQAFVASEGHRLLSADYSQIELR 656 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA ++ +Q + AF G D++ +T A F V P VT + R KV+ + Y Sbjct: 657 ILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEMRRRAKVINFGIVY 710 >gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541] gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541] Length = 934 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T + DP+ LQ I +R IA +G K++ AD + Sbjct: 656 PKTGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRTEEGRRIRQAFIARKGYKVMAADYSQ 714 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F V QVT DQR K + L Y Sbjct: 715 IELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLDQVTSDQRRSAKAINFGLIY-- 772 Query: 444 GAKAF 448 G AF Sbjct: 773 GMSAF 777 >gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016] gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016] Length = 957 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 678 PHTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQ 736 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF+ G+D++ T A V+ QV+ +QR K + L Y Sbjct: 737 IELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIY-- 794 Query: 444 GAKAF 448 G AF Sbjct: 795 GMSAF 799 >gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196] Length = 938 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P+ R H Q + +++P+ LQ I VR A +G +V Sbjct: 645 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTEEGRKVRRAFTAPQGSVIV 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581] gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581] Length = 922 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I +R +A G +LV AD + Sbjct: 644 PTTGRLHTSYHQAVTATGRLSSSDPN-LQNIPIRTEQGRRIRQAFVARPGYRLVAADYSQ 702 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G++ L AF G D++ T A F VA +V+ +QR K + L Y Sbjct: 703 IELRIMAHLSGDKGLLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIY 760 >gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114] gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114] Length = 935 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 50/99 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 694 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 753 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K ++ F Sbjct: 754 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 792 >gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] Length = 937 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P PR +R H Q + +++P+ LQ I VR A G +V Sbjct: 645 LPEMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013] Length = 930 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P+ R H Q + +++P+ LQ I VR A +G +V Sbjct: 645 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae] Length = 936 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T + DP+ LQ I +R IA EG K+V AD + Sbjct: 658 PKTKRVHTSYHQAVTATGRLSSRDPN-LQNIPVRTEEGRRIRQAFIAREGYKIVAADYSQ 716 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F V VT +QR K + L Y Sbjct: 717 IELRIMAHLSQDKGLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINFGLIY-- 774 Query: 444 GAKAF 448 G AF Sbjct: 775 GMSAF 779 >gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013] Length = 983 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P+ R H Q + +++P+ LQ I VR A +G +V Sbjct: 690 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTEEGRKVRRAFTAPQGSVIV 748 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 749 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 808 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 809 GLIYGMGQYGLAKSLGIDNLSAKNF 833 >gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] Length = 905 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 35/187 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 F + A R A + + L+++++ DGR+ T Q A+ TGR S QN+P + Sbjct: 600 FLEHLLAHRDAAKLRVTVEGLLKSVHPDGRIHTTFQQTIAA-TGRLSSTEPNLQNIPIRT 658 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392 + + +R EG + L+ AD + IE R++A + Sbjct: 659 EAGRQ-------------------------IRRAFRVGEGFESLLTADYSQIEMRIMAHL 693 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---Q 449 +G++ ++AF TGEDL+ +R F V PA VT + R+ K M L Y G AF Q Sbjct: 694 SGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVKAMSYGLAY--GLSAFGLSQ 751 Query: 450 KMASTTG 456 ++ TG Sbjct: 752 QLGIATG 758 >gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] Length = 929 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T + DP+ LQ I +R +A EG +++ Sbjct: 646 PQMVHPLTKRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNKEGRRIRQAFVAPEGYRIMA 704 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ +Q LKAF G+D++ T A F + QVT +QR K + Sbjct: 705 ADYSQIELRIMAHLSQDQGLLKAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFG 764 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 765 LIY--GMSAF 772 >gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336] gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336] Length = 951 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I C+R IA +G K++ AD + I Sbjct: 676 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIKNEEGRCIRQAFIARKGYKIIAADYSQI 734 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ + + AF G+D++ +T A F + +VT +QR K + L Y G Sbjct: 735 ELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIY--G 792 Query: 445 AKAF 448 +F Sbjct: 793 MSSF 796 >gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902] Length = 930 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P+ R H Q + +++P+ LQ I VR A +G +V Sbjct: 645 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76] Length = 916 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P+ R H Q + +++P+ LQ I VR A +G +V Sbjct: 623 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTEEGRKVRRAFTAPQGSVIV 681 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 682 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 741 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 742 GLIYGMGQYGLAKSLGIDNLSAKNF 766 >gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568] Length = 937 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 50/99 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F +AP Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 748 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K ++ F Sbjct: 749 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNF 787 >gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345] gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345] Length = 918 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EGKK++ AD + IE R++A ++ + L AF G+D++ T A F+V ++ Sbjct: 678 IRHAFIAPEGKKILAADYSQIELRIMAHLSQDTGLLTAFAEGKDIHKATAAEVFDVDFSE 737 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT DQR K + L Y G AF Sbjct: 738 VTSDQRRRAKAVNFGLIY--GMSAF 760 >gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76] gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385] Length = 983 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F AP Sbjct: 735 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 794 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ F Sbjct: 795 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 833 >gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275] Length = 931 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P PR +R H Q + +++P+ LQ I VR A G +V Sbjct: 645 LPDMISPRDNRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPPGSVIV 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153] Length = 930 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F AP Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ F Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136] Length = 930 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F AP Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ F Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] Length = 934 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q +T + DP+ LQ I +R +A +G K++ AD + Sbjct: 656 PRTQRVHTSYHQAVTATGRLSSRDPN-LQNIPVRTEEGRRIRQAFVARDGYKVMAADYSQ 714 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F V +VT DQR K + L Y Sbjct: 715 IELRIMAHLSQDKGLLTAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIY-- 772 Query: 444 GAKAF 448 G AF Sbjct: 773 GMSAF 777 >gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 872 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 84/319 (26%), Positives = 127/319 (39%), Gaps = 62/319 (19%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS--SNKKLTPQAIQVFNNRMRAS 284 + + SS + E L L L TG + +T Q VL S + AI F ++ Sbjct: 519 FNIRSSQQLAELLFGTLGLPTGGKTKGGQTSTAQDVLEKLSGRHPVVDAILEFR-KLEKL 577 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 RS L+ L ++ GR+ T L A+ TGR S QN+P Sbjct: 578 RSTYLE--PLPRLVDGAGRIHTTFNQL-ATATGRLSSSNPNLQNIP-------------- 620 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + D + +R+C A+ G +LV AD + +E RVLA M+ + L AF Sbjct: 621 -----VRGD------LGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFRE 669 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T + ++VA QV+ DQR K + L Y G QK+A + L Sbjct: 670 GADIHSRTASLLYDVAQDQVSTDQRRNAKTINFGLIYGMGP---QKLAQELRIPLTEAKA 726 Query: 465 LV-----KTNSAPEEWEDAENFC-------------RWMQENHPEH----------AIED 496 + K E +++AE R + E H E+ AI Sbjct: 727 FIERYFSKLQKLREFYDEAETTARELGYVTTMAGRRRLLPEIHSENTQLKSQARRQAINT 786 Query: 497 LFIGTACERVKKAWRQKHS 515 L G+A + +K A H+ Sbjct: 787 LIQGSAADIIKLAMLAAHA 805 >gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P] gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P] Length = 980 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 11/152 (7%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376 P + P+ R H + Q + +++P+ LQ I + ++ V E L Sbjct: 695 LPNEVNPKTGRIHTQYMQAVAATGRLSSNNPN-LQNIPIRTARGREVRKAFVPRDENHVL 753 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++ E+ + AF+ GED++ +T A+ FNV +VT+DQR+ K + Sbjct: 754 LAADYSQIELRIIAALSEEENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVN 813 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + Y G AF +++ T L+ + L+ T Sbjct: 814 FGIVY--GVSAF-GLSNQTDLSRSEAKELIDT 842 >gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190] Length = 975 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F AP Sbjct: 735 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 794 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ F Sbjct: 795 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 833 >gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305] gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305] Length = 950 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R IA +G K+V AD + I Sbjct: 674 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQI 732 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A +A ++ LKAF G+D++ +T + F V +VT +QR K + L Y Sbjct: 733 ELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIY 789 >gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01] gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01] Length = 960 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q + +SDP+ LQ I +R +A +G KL+ Sbjct: 676 LPEQINPRTGRIHTSYHQAVAATGRLSSSDPN-LQNIPIRTAEGRRIRQAFVAPKGYKLM 734 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A +A ++ L AF D++ T A F V QVT DQR K + Sbjct: 735 AADYSQIELRIMAHLAKDEGLLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINF 794 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 795 GLIY--GMSAF 803 >gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355] Length = 908 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P+ R H Q + +++P+ LQ I VR A +G +V Sbjct: 623 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTAEGRRVRRAFTAPQGSVIV 681 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 682 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF 741 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 742 GLIYGMGQYGLAKSLGIDNLSAKNF 766 >gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] Length = 931 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 652 PHTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF+ G+D++ T A V+ QV+ +QR K + L Y Sbjct: 711 IELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 899 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 104/253 (41%), Gaps = 31/253 (12%) Query: 192 INDRGYCVDVALAHTLNQIVDVE-RTKLDQ--ELESLTYGLVSSSRCLEKLKTWLFLETG 248 + +G +D A+ TL+ VD E TKL L + + S+ + + L L L Sbjct: 513 MEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLPI- 571 Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 L +T Q VL + P + R S+ L+TL + DGR+ T Sbjct: 572 LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKLKSTYLDTLPGLVAKDGRIHTTY 630 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 A+ TGR S QN+P + E +R Sbjct: 631 H-QAATATGRLSSSDPNLQNIPVRTELGRE-------------------------IRRAF 664 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +A G +LV AD + +E R+LA +A + L AF+ ED++ T A F V P +V +DQ Sbjct: 665 VAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQ 724 Query: 429 RAIGKVMELALGY 441 R + K + + Y Sbjct: 725 RRVAKTVNFGIAY 737 >gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] Length = 975 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F AP Sbjct: 735 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 794 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ F Sbjct: 795 VSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 833 >gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6] gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6] Length = 931 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 652 PHTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF+ G+D++ T A V+ QV+ +QR K + L Y Sbjct: 711 IELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] Length = 903 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 24/170 (14%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q T +S+P+ I + +R IA G L+ D + I Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQI 684 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + RVLA ++ + ++AF++ +D++ T AR N+ P++VTK+QR + K + + Y Sbjct: 685 DLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPSKVTKEQRRLAKTVNFGVIYG-- 742 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 S+ GL T L E+A+ F + E +P A+ Sbjct: 743 -------MSSYGLEQATELSL----------EEADKFIKAYFEKYPRVAV 775 >gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202] gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202] Length = 950 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R IA +G K+V AD + I Sbjct: 674 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQI 732 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A +A ++ LKAF G+D++ +T + F V +VT +QR K + L Y Sbjct: 733 ELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIY 789 >gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34] gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus metallidurans CH34] Length = 934 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 3/103 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA+ G +V AD + IE R++A ++G++ L+AF GED++ T F V Sbjct: 695 IREAFIAAPGNVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREA 754 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 V+ +QR KV+ L Y G AF +AS G+ H + Sbjct: 755 VSSEQRRYAKVINFGLIY--GMSAF-GLASNLGIEREAAKHYI 794 >gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] Length = 838 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 87/355 (24%), Positives = 134/355 (37%), Gaps = 114/355 (32%) Query: 290 KLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 KLN+ +++ M+ DGR+R T G + TGR S QNLP Sbjct: 551 KLNSTFVKGILKHMDEDGRVRTTFIQTGTA-TGRLSSAEPNLQNLP-------------- 595 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 SD IS +R V A G LV AD + IE R+LA ++ ++ L+A+ Sbjct: 596 ------VSDE-----ISKKIRYAVTAPAGYNLVWADYSQIELRILAHLSQDEKLLEAYRK 644 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T + F ++ +V + R I K + + Y ++ G+++ Sbjct: 645 GRDIHTETASYLFGISAEEVDERLRRIAKTVNFGIIYGMSPHG---LSERLGISV----- 696 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 E+AE + E P +VK+ + N L Sbjct: 697 -----------EEAEKYIDRYFEKFP--------------KVKEY----------IENTL 721 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A+E+ K I RKR PL +K N+ R G R+ +N T Sbjct: 722 REAYEKGY--VKTIFGRKR---PLPELKSSNKNI------------RSFG-ERAAVNAT- 762 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635 +Q + DI+ M+ K G +VL VHDEIV E Sbjct: 763 -----------------IQGTAADIMKLAMVKLYKKLEKLGAYMVLQVHDEIVIE 800 >gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 532 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 32/165 (19%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L + +++DGR+R + +G SR+GR S C PP Sbjct: 266 LKKFIDNDGRIRAHWRLIG-SRSGRMS-CNNPP--------------------------- 296 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 LQ + R +A EG KL+ +D + IE RVLA ++ ++ + F G DL++ T Sbjct: 297 ---LQAMPGNSREFFVADEGYKLIGSDYSQIELRVLASISKDETLISYFNNGIDLHLGTA 353 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + F +++K++R + K + + Y A QK +G++ Sbjct: 354 SLIFKKPIDEISKEERQVAKSLNFGIVYGITAYGIQKNLRKSGVD 398 >gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399] Length = 931 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G++ + AF+ GED++ T A F AP Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ F Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3] gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3] Length = 916 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG+K++ AD + IE R++A ++ ++ L AF G+D++ T A F+V ++ Sbjct: 676 IRHAFIAPEGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSE 735 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT DQR K + L Y G AF Sbjct: 736 VTSDQRRRAKAVNFGLIY--GMSAF 758 >gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001] gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001] Length = 1047 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 125/307 (40%), Gaps = 78/307 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGKKL+ AD + IE R+LA +A +AFE G D++ T + F V Q Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQ 863 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +T D R K + + Y G AF +A G+ E+A F + Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D +I T K++ R+K V+ L+ + Sbjct: 905 QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 Y + NN PS R+ V R +N + G + I + Sbjct: 940 ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGL 661 A++R E + A K ++L VHDE+V E PD DE A++ + H+M P+ A L Sbjct: 974 AMTR---MEDALGAEKLAARMLLQVHDELVFEVPD-DEVEATIPVIAHVMEEAPAPALSL 1029 Query: 662 --PLKAE 666 PL E Sbjct: 1030 SVPLVVE 1036 >gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38] gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38] Length = 950 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 4/106 (3%) Query: 363 CVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA E L+ AD + IE R++A + GE+ +KAF+ ED++ +T A+ FN+ Sbjct: 709 LIRKAFIARDENYTLLSADYSQIELRIIAALCGEENMIKAFQNHEDIHKSTAAKVFNIPL 768 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +VTK+QR+ K + + Y G AF +++ T L+ A L++ Sbjct: 769 DEVTKEQRSHAKTVNFGIIY--GVSAF-GLSNQTNLSRKESAELIE 811 >gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] Length = 940 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 11/152 (7%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIA-SEGKKL 376 P + P+ R H +Q + +++P+ LQ I VR I E L Sbjct: 655 LPNEINPKTGRVHTIYNQAVAATGRLSSNNPN-LQNIPIRTERGQQVRKAFIPRDENHVL 713 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++G++ L AF+ ED++ T ++ FNV +VT++QR K + Sbjct: 714 MAADYSQIELRIIAALSGDEGMLSAFQNNEDIHSATASKVFNVPLEEVTREQRGNAKTVN 773 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + Y G AF ++ T LN + L++T Sbjct: 774 FGIIY--GVSAF-GLSQQTNLNRSEAKELIET 802 >gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella vaginalis AMD] gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella vaginalis AMD] Length = 96 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L +D ET S ++L KCG+ KYAE D ++LF + D V++ D +P+V+ Sbjct: 1 MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60 Query: 59 EALENTDVTIVAHNSYFERTVL 80 AL + VT A N+ FER L Sbjct: 61 SALTDETVTKWAFNAQFERVCL 82 >gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] Length = 880 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 5/116 (4%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q IT ++DP+ I + +R IA + LV AD + +E Sbjct: 603 KDGRIHSSFNQTITTTGRISSTDPNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVE 662 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA M+ + ++AF +GED++ T ++ FNV QVT + R+ K + + Y Sbjct: 663 LRVLAHMSQDPHMIEAFNSGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGIIY 718 >gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] Length = 904 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 25/151 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L +A+++DGR+ T Q A+ TGR S QN+P + + + ++ Sbjct: 616 VQGLQKAVDADGRIHTTYQQTIAA-TGRLSSVDPNLQNIPIRTEAGRRIREVF------- 667 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 V+ S L+ AD + IE R++A ++G++ ++AF GEDL+ Sbjct: 668 -----------------VVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHR 710 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ F VAP +VT + RA K M L Y Sbjct: 711 YVGSKVFQVAPEEVTAEMRAKVKAMSYGLAY 741 >gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] Length = 890 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 8/134 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q +T +SDP+ I + +R C + + G+ LV AD + I Sbjct: 612 PDTGRVHTSFNQCVTATGRLSSSDPNLQNIPVRGELGRRMRGCFVPAPGRLLVSADYSQI 671 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA ++ + L+ G D++ T AR F+V P VT++ R K + + Y G Sbjct: 672 ELRVLAHLSQDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLY--G 729 Query: 445 AKAFQKMASTTGLN 458 AF ++A G++ Sbjct: 730 MSAF-RLAREQGVS 742 >gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus] Length = 169 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 1/108 (0%) Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 DP+ LQ I +RS A EGK LV++D + IE R+ + G++ ++AF+ G DL+ T Sbjct: 1 DPN-LQNIPRELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYT 59 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + +V+K++R + K + L Y AK + A + G++L+ Sbjct: 60 ASILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLS 107 >gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] Length = 948 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS----- 361 L + G S+ P Q + R H + Q + +++P+ LQ I Sbjct: 646 VLDYRGLSKLKSTYVDALPAQVNAKTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTER 704 Query: 362 --DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 ++ V +E L+ AD + IE R++A ++ E+ +KAF+ GED++ +T A+ FNV Sbjct: 705 GRQVRKAFVPRNEDYVLLAADYSQIELRIIAALSQEETMMKAFQEGEDIHASTAAKVFNV 764 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +VT++QR+ K + + Y G AF +++ T L + L+ T Sbjct: 765 PIDEVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLTRSESKELIDT 810 >gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829] gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] Length = 1030 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 35/179 (19%) Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLP 330 Q I + RM+ + L+ LV + SDGR+ T Q + A TGR S QN+P Sbjct: 728 QLILDYRERMKIKNT---YLDALVHDIRSDGRIHSTFNQTIAA--TGRLSSSDPNLQNIP 782 Query: 331 -RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 R S H VR + + D + IE R+L Sbjct: 783 TRSSLGHR--------------------------VRKAFVLPRNHLFLACDYSQIELRLL 816 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A ++ ++ + AF+TG D + T AR F+V+P +VT R+ K + + Y G +AF Sbjct: 817 AHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNFGIVY--GQQAF 873 >gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4] gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4] Length = 912 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 32/210 (15%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+ LF E G+ T+T + + L + F + R A +L T VE Sbjct: 567 KQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFEKTEHPFLQHLLEHRDAT-RLRTTVE 625 Query: 297 AM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + DGR+ TLQ A+ TGR S QN+P R+ E Sbjct: 626 GLIKSVADDGRIHTTLQQTIAA-TGRLSSIEPNLQNIP--VRTEE--------------- 667 Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + +G +L+ AD + IE R++A ++ ++ ++AF +GEDL+ Sbjct: 668 --------GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTF 719 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R+F+V A++T +QR K M L Y Sbjct: 720 VASRAFSVPAAEITPEQRYRVKAMSYGLAY 749 >gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17] gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46] gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] Length = 904 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 41/255 (16%) Query: 196 GYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHL 251 G VD+ + L +Q D R D YG++ L ++L+ LF E G+ Sbjct: 519 GIAVDLPMLTELQSQFGDQIRDAADA-----AYGVIGKQINLGSPKQLQVVLFDELGMPK 573 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL 308 T+T + + L + F + A R + ++ L++A+ +DGR+ T Sbjct: 574 TKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGLLQAVAADGRIHTTF 633 Query: 309 -QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367 Q + A TGR S QN+P I +D S +R Sbjct: 634 NQTIAA--TGRLSSTEPNLQNIP-------------------IRTD------ASRRIRDA 666 Query: 368 VIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + +G +L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +VT Sbjct: 667 FVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTG 726 Query: 427 DQRAIGKVMELALGY 441 + R K M L Y Sbjct: 727 ELRRRVKAMSYGLAY 741 >gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] Length = 894 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H +Q T +S P+ LQ I +RS IA++G L+ AD + Sbjct: 616 PRTGRVHTSFNQCGTATGRLSSSSPN-LQNIPIRTEEGRRIRSAFIAADGCLLLAADYSQ 674 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 I+ RVLA + ++ + AF+ G+D++ T A FNV+P VT + R + K + + Y Sbjct: 675 IDLRVLAHYSQDRELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVY-- 732 Query: 444 GAKAF 448 G +F Sbjct: 733 GMSSF 737 >gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp] gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp] Length = 931 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q PR R H Q + +SDP+ LQ I +R +A +G K++ Sbjct: 647 LPEQINPRTGRIHTSYHQAVAATGRLSSSDPN-LQNIPIRTAEGRRIRQAFVAPKGYKMM 705 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A +A ++ L AF D++ T A F VA +VT DQR K + Sbjct: 706 AADYSQIELRIMAHLAKDEGLLDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINF 765 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 766 GLIY--GMSAF 774 >gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58] gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58] Length = 938 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 7/145 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P+ R H Q + +++P+ LQ I VR A +G +V Sbjct: 645 LPEMISPKDGRVHTTYAQAVAITGRLASNNPN-LQNIPIRTEEGRKVRRAFTAPQGSVIV 703 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF+ GED++ T A F AP V+ +QR K + Sbjct: 704 SADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINF 763 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 L Y G K L+ F Sbjct: 764 GLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] Length = 933 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGI 384 P R H Q +T +SDP+ P++ D +R IA EG ++V AD + I Sbjct: 654 PVSGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEDRRIRQAFIAPEGYRIVAADYSQI 713 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ + LKAF G+D++ T A F V +V +QR K + L Y G Sbjct: 714 ELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIY--G 771 Query: 445 AKAF 448 AF Sbjct: 772 MSAF 775 >gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] Length = 950 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA +G K++ AD + Sbjct: 673 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQ 731 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + + AF G+D++ +T A F + QVT +QR K + L Y Sbjct: 732 IELRIMAHLSNDAGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIY-- 789 Query: 444 GAKAF 448 G +F Sbjct: 790 GMSSF 794 >gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT] gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT] Length = 903 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q T +S+P+ I + +R IA +G ++ D + I Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQI 684 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + RVLA ++G+ ++AF +D++ T AR N+ P++VTK+QR + K + + Y Sbjct: 685 DLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIY 741 >gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365] gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365] Length = 930 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 8/149 (5%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV 378 PP P R H +Q + + DP+ I I +R +A+ GK LV Sbjct: 646 LPPLVNPHTGRIHTSFNQAVAATGRLSSQDPNLQNIPIRKDIGRRIRRAFVAAPGKTLVS 705 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + IE RV+A ++G++ ++AF+ D++ T A F++ ++ D+R + K + Sbjct: 706 IDYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDERRVAKAVNYG 765 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L Y G F +A + G++ AH ++ Sbjct: 766 LMY--GQSEF-GLAQSLGISRAQAAHYME 791 >gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl polymerase 1 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus] Length = 831 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 43/287 (14%) Query: 171 IFKRL-EPLSSKEQELWYLDQT----------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +F+ L E L +E+ LW ++ + G +DVA L+ V+ E +L+ Sbjct: 411 LFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQALSLEVEAEVRQLE 470 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 +E+ L G + ++L+ LF E GL TE T +R S+ + + Sbjct: 471 EEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVD 529 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R+ R NT ++ + P P+ R H Sbjct: 530 RILQYRELTKLKNTYIDPL--------------------------PALVHPKTGRLHTRF 563 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q T +SDP+ I + +R +A EG LVV D + IE RVLA ++G Sbjct: 564 NQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSG 623 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ ++ F+ G D++ T + F V+P V R K + + Y Sbjct: 624 DENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLMRRAAKTINFGVLY 670 >gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1] gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1] Length = 903 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q T +S+P+ I + +R IA +G ++ D + I Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQI 684 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + RVLA ++G+ ++AF +D++ T AR N+ P++VTK+QR + K + + Y Sbjct: 685 DLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIY 741 >gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92] gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054] gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] Length = 904 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 35/223 (15%) Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 YG++ L ++L+ LF E G+ T+T + + L + F + A Sbjct: 546 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 605 Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L++A+ +DGR+ T Q + A TGR S QN+P Sbjct: 606 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 654 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 I +D S +R + +G +L+ AD + IE R++A ++G++ Sbjct: 655 ----------IRTD------ASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 698 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 699 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 741 >gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 923 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGK+++ AD + IE R++A ++ ++ L+AF G+D++ T A F+VA Sbjct: 683 IRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRAFAEGKDIHRATAAEVFDVAFET 742 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 743 VTSEQRRRAKAVNFGLIY--GMSAF 765 >gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] Length = 903 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q T +S+P+ I + +R IA +G ++ D + I Sbjct: 625 PHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQI 684 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + RVLA ++G+ ++AF +D++ T AR N+ P++VTK+QR + K + + Y Sbjct: 685 DLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIY 741 >gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700] gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700] Length = 985 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA +G K++ AD + Sbjct: 708 PQTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQ 766 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + + AF G+D++ +T A F + QVT +QR K + L Y Sbjct: 767 IELRIMAHLSNDAGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIY-- 824 Query: 444 GAKAF 448 G +F Sbjct: 825 GMSSF 829 >gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110] gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110] Length = 940 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 10/143 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + ++DP+ LQ I VR IA G + AD + Sbjct: 662 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFIAPPGSVIASADYSQ 720 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L+AF G D++ T A F P QV+ +QR KV+ L Y Sbjct: 721 IELRIMAHISGDESLLRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIY-- 778 Query: 444 GAKAFQKMASTTGLNLNTFAHLV 466 G +F +A G+ A + Sbjct: 779 GMSSF-GLARNLGIETKAAASYI 800 >gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1] gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1] Length = 919 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379 P+ + R H Q +T ++DP+ LQ I +R +A EG KLV A Sbjct: 637 PEMIQHTGRIHTSYHQAVTATGRLSSTDPN-LQNIPIRTQEGRRIRQAFVAPEGHKLVAA 695 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++ ++ L AF ED++ T A F VA VT +QR K + L Sbjct: 696 DYSQIELRIMAHLSQDKGLLDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAINFGL 755 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 756 IY--GMSAF 762 >gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101] gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101] Length = 949 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%) Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +A E L+ AD + IE R++A ++GE+ + AF+ GED++ T A+ F+VA Sbjct: 709 IRKAFVARDENYTLISADYSQIELRIIAALSGEENMIAAFQNGEDIHRATAAKVFDVALE 768 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 +V+++QR+ K + + Y G AF +++ T L+ + A L+ Sbjct: 769 EVSREQRSNAKTVNFGIIY--GVSAF-GLSNQTSLSRSESAALI 809 >gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] Length = 939 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G +L+ +D + IE R++A ++G+ LKAF G+D++ T A FN+ + Sbjct: 700 IRQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGKDIHQATAAEIFNMPLEE 759 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 760 VTSEQRRSAKAVNFGLIY--GMSAF 782 >gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661] gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661] Length = 928 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R IAS+G K+V AD + Sbjct: 649 PITGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIASKGHKIVAADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G D++ T A F +A +VT +QR K + L Y Sbjct: 708 IELRIMAHLSQDKGLLSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINFGLIY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] Length = 948 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 4/105 (3%) Query: 363 CVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R I +E L+ AD + IE R++A ++GE+ + AF+ +D++ +T A+ FNVA Sbjct: 707 LIRKAFIPRNENYTLISADYSQIELRIIAALSGEENMIAAFQNNQDIHKSTAAKVFNVAL 766 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 VTK+QR+ K + + Y G AF +++ T L+ A L+ Sbjct: 767 EDVTKEQRSNAKTVNFGIIY--GVSAF-GLSNQTSLSRKESAELI 808 >gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 917 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q + ++DP+ LQ I +R I G KLV AD + Sbjct: 638 PQTGRVHTSYHQAVAATGRLSSTDPN-LQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQ 696 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L AF G+D++ T A F VA VT D R K + L Y Sbjct: 697 IELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKAINFGLIY-- 754 Query: 444 GAKAF 448 G AF Sbjct: 755 GMSAF 759 >gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1] gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1] Length = 986 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 82/342 (23%), Positives = 137/342 (40%), Gaps = 51/342 (14%) Query: 171 IFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + K+LE L KE L++++Q G CV H + + V+ +L+Q Sbjct: 573 LMKKLEELDMKELFYTIEMPLIFSLFHMEQA----GICVKREELHDYGEKLRVQIERLEQ 628 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFN 278 E+ T G + ++L LF + L T+T +KL P+ +Q Sbjct: 629 EIYGET-GEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKIL 687 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + + ++ + L + DGR+ GT Q + A TGR S QN+P Sbjct: 688 DYRQLTKLKSTYADGLAGYIREDGRIHGTFNQTITA--TGRLSSTEPNLQNIPVRMELGR 745 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 E +R + EG V AD + IE RVLA M+G++ Sbjct: 746 E-------------------------IRRVFVPEEGSVFVDADYSQIELRVLAHMSGDER 780 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++A+ ED++ T + F+V +VT QR K + + Y G AF + L Sbjct: 781 LIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVY--GISAF---GLSEDL 835 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHAIEDLF 498 ++ L N E + D + F R ++E + + +F Sbjct: 836 SITRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVTTMF 877 >gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] Length = 857 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA-DLAGIEA 386 R H +Q++T +SDP+ LQ I +RS + EG ++ D + +E Sbjct: 582 RVHTSFNQMVTATGRLSSSDPN-LQNIPVRTEEGKVIRSLFVPGEGYDFFISSDYSQVEL 640 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA M+G++ ++AFE ED++ T + F V +VT +QR+ K + + Y Sbjct: 641 RVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIY 695 >gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] Length = 887 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 22/238 (9%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379 P+ + SR H +Q+ T +S P+ LQ I +R+C IA G L A Sbjct: 605 PKLVGEDSRLHTHFNQLATATGRLSSSQPN-LQNIPIRGKHGPRMRACFIAGPGAMLAAA 663 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA +G+ + AF ED++ T A + P V D+R K + L Sbjct: 664 DYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAALLTDKQPQDVLADERRNAKTINFGL 723 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G QK+A + +N + E + D + + + A F+ Sbjct: 724 IYGMGP---QKLARELDITVNQAKEFI------ERYFDKLATLKAYYDTIVKDAESHGFV 774 Query: 500 GTACERVKKAWRQKHSRVSELWNEL-HQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 T R ++ + HSR ++L ++ QA I+ A I + + +V KDK+ Sbjct: 775 TTLAGR-RRLLPELHSRNTQLVSQARRQAVNTVIQGSAADIIK----MAMVAAHKDKD 827 >gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 879 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 32/189 (16%) Query: 264 SSNKKLTPQAIQVFNNRMRASRSA--VLKLNTLVE-AMNSDGRLRGTLQFLGASRTGRWS 320 +S L QA F N + R A ++++ T +E A++ GR+ T + G+S TGR + Sbjct: 561 ASLADLQEQAPHPFLNLLLQHRDATKLVQIITGIEKAIDDSGRVHTTYEQAGSS-TGRIA 619 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVA 379 QN+P + + + +RS A G L+ A Sbjct: 620 SNDPNLQNVPIKTATGRQ-------------------------IRSAFEAGAGFDTLLTA 654 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++G++ ++AF GEDL+ +R F V PA+VT + R K M L Sbjct: 655 DYSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGSRIFGVEPAEVTAEMRTKVKAMSYGL 714 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 715 AY--GLSAF 721 >gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] Length = 857 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA-DLAGIEA 386 R H +Q++T +SDP+ LQ I +RS + EG ++ D + +E Sbjct: 582 RVHTSFNQMVTATGRLSSSDPN-LQNIPVRTEEGKVIRSLFVPGEGYDFFISSDYSQVEL 640 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA M+G++ ++AFE ED++ T + F V +VT +QR+ K + + Y Sbjct: 641 RVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIY 695 >gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945] Length = 930 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A G +V AD + IE R++A ++G++ + AF+ GED++ T A F AP Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 V+ +QR K + L Y G K L+ F Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 788 >gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] Length = 920 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 10/143 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR H +Q +T +SDP+ LQ I +R C I +G AD + Sbjct: 642 PRTGHIHTSFNQTVTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RV+A ++G++ ++AF+ G D++ T A+ + VT+D+R K + Y Sbjct: 701 IELRVMAHLSGDKHMIEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIY-- 758 Query: 444 GAKAFQKMASTTGLNLNTFAHLV 466 G F +A G++ N L+ Sbjct: 759 GITVF-GLAERLGIDRNEAKQLI 780 >gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] Length = 911 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q +T +SDP+ LQ I +R IA++G K+V AD + I Sbjct: 633 RTQRVHTSYHQAVTATGRLSSSDPN-LQNIPIRSEEGRRIREAFIAADGYKIVAADYSQI 691 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ L AF G D++ T A F V +VT D R K + L Y G Sbjct: 692 ELRIMAHLSQDKGLLSAFANGLDVHSATAAEVFGVELEEVTSDMRRKAKAVNFGLIY--G 749 Query: 445 AKAF 448 AF Sbjct: 750 MSAF 753 >gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] Length = 899 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 7/143 (4%) Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 R L + G ++ P P R H Q + ++DP+ LQ I Sbjct: 595 RLILDYRGMAKLKNTYADALPQMINPDTGRVHTHFQQAVAATGRLSSNDPN-LQNIPVRT 653 Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +A EG L+ AD + IE R+LA ++G+ L+AF GED++ T A F+ Sbjct: 654 EQGRRIRQAFVAEEGHWLLSADYSQIELRILAHLSGDARLLQAFAEGEDIHAVTAAEVFD 713 Query: 419 VAPAQVTKDQRAIGKVMELALGY 441 +AP V R K + L Y Sbjct: 714 LAPEDVDSAARRAAKAINFGLIY 736 >gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q IT ++DP+ LQ I VR + +G K V AD + I Sbjct: 652 RTGRVHTSYHQAITATGRLSSTDPN-LQNIPIRNEEGRRVRQAFVPRKGNKFVAADYSQI 710 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ L AF G+D++ T + F V +VT +QR K + L Y G Sbjct: 711 ELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIY--G 768 Query: 445 AKAF 448 AF Sbjct: 769 MSAF 772 >gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3] gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3] Length = 936 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 11/142 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T +SDP+ LQ I +R IA +G K+V AD + IE Sbjct: 660 GRVHTSYHQAVTVTGRLSSSDPN-LQNIPIRSEQGRRIRQAFIAPQGYKIVAADYSQIEL 718 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ---- 442 R++A ++ ++ L+AF TG D++ T + F+V+ +VT +QR K + L Y Sbjct: 719 RIMAHLSQDKGLLEAFSTGLDIHKATASEVFSVSVDEVTTNQRRSAKAINFGLIYGMSAF 778 Query: 443 GGAKAFQKMASTTGLNLNTFAH 464 G AK + S L ++ + H Sbjct: 779 GLAKQLKISRSDAKLYMDKYFH 800 >gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] Length = 977 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q + +SDP+ LQ I +R IA G +++ AD + Sbjct: 699 PKTGRVHTTYSQAVAITGRLASSDPN-LQNIPVRTPEGRRIREAFIAPPGHQMMSADYSQ 757 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + LKAF GED++ T + F V A+V +QR KV+ L Y Sbjct: 758 IELRIMAHISQDAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAKVINFGLIY-- 815 Query: 444 GAKAFQKMASTTGL 457 G AF +A+ G+ Sbjct: 816 GMSAF-GLAANLGI 828 >gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170] gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170] Length = 944 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 11/172 (6%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-- 361 +R L++ G S+ P Q R R H + Q + +++P+ LQ I Sbjct: 639 IRNVLEYRGLSKLKSTYVDALPLQVEERTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIR 697 Query: 362 -----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 ++ V E L+ AD + IE R++A ++ E ++AF+ GED++ +T ++ Sbjct: 698 TERGRQVRKAFVPRDEDYTLLAADYSQIELRIIAALSEEDTMIEAFKNGEDIHASTASKV 757 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 F+V +VT++QR+ K + + Y G AF +++ T L+ L++T Sbjct: 758 FDVPLDEVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLSRTEAKELIET 806 >gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] Length = 879 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 33/164 (20%) Query: 290 KLNTLVEAMNS----DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 KL +++A+++ DGR+ T G S+TGR S QN+P R+ E Sbjct: 586 KLKQIIDALDTATGPDGRIHTTYVQTG-SQTGRLSSTDPNLQNIP--IRTEE-------- 634 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 S +R+ EG + L+ AD + IE R++A ++G+ ++AF + Sbjct: 635 ---------------SRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNS 679 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 GEDL+ AR F V PA+VT R K M L Y G AF Sbjct: 680 GEDLHRFVGARVFGVEPAEVTPAMRTKVKAMSYGLVY--GLSAF 721 >gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2] gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2] Length = 931 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382 LP R H Q + ++DP+ LQ I VR +A EGK + AD + Sbjct: 652 LPSDGRVHTHYAQAVAVTGRLSSNDPN-LQNIPVRTPEGRRVREAFVAPEGKLIASADYS 710 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G++ L AF+ G D++ T A F V+ +V+ +QR KV+ L Y Sbjct: 711 QIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIY 769 >gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2] Length = 833 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 122/300 (40%), Gaps = 43/300 (14%) Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206 F E ++ +F+ L P S E+ LW + + RG +DV L Sbjct: 400 FTEDAAERALLSERLFQTLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L+ ++ E +L+ E+ L G + ++L+ LF E GL T R + Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 K+ T Q + A R A + +VE + LQ+ S+ P Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381 PR R H +Q T +SDP+ I + +R +A EG L+ AD Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+D++ T A F + PA V + R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQKMRRAAKTVNFGVLY 671 >gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630] gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42] gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile] Length = 882 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P +R H +Q IT +++P+ P+++ + +R IA + KLV AD + + Sbjct: 604 PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQV 663 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R K + + Y Sbjct: 664 ELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIY 720 >gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1] Length = 830 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P+ +R H +Q T +SDP+ I + +R +A EG KLVV D + I Sbjct: 553 PKTNRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWKLVVLDYSQI 612 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G+D++ T + F V P V R K + + Y Sbjct: 613 ELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLY 669 >gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] Length = 957 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R I ++G K+V AD + I Sbjct: 681 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFITNKGYKIVAADYSQI 739 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A +A ++ + AF G+D++ T A F +A QVT +QR K + L Y Sbjct: 740 ELRIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIY 796 >gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255] Length = 882 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P +R H +Q IT +++P+ P+++ + +R IA + KLV AD + + Sbjct: 604 PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQV 663 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R K + + Y Sbjct: 664 ELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIY 720 >gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26] gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932] gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55] gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79] gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196] gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291] gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58] gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196] gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291] Length = 882 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P +R H +Q IT +++P+ P+++ + +R IA + KLV AD + + Sbjct: 604 PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQV 663 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R K + + Y Sbjct: 664 ELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIY 720 >gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] Length = 911 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR I + K + D + IE RVLA M+ E +KAF D+++ FN++ Q Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQNADIHLQAAKLIFNISDNQ 720 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +T +QR I KV + Y G F +A+ +N+N ++K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLANDLNMNVNQAKQMIK 761 >gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17] gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17] Length = 926 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q +T +S+P+ LQ I +R +A +G KL+ AD + I Sbjct: 648 RTGRVHTSYHQAVTATGRLSSSEPN-LQNIPIRSEQGRRIRQAFVAEKGYKLLAADYSQI 706 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ L AF GED++ T A F V +V DQR K + L Y G Sbjct: 707 ELRIMAHLSEDKGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINFGLIY--G 764 Query: 445 AKAF 448 AF Sbjct: 765 MSAF 768 >gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] Length = 953 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 33/182 (18%) Query: 281 MRASRSAVLK---LNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R R + LK ++ L+E +N GR+ + +GA TGR S QN+P S Sbjct: 644 LRYRRLSKLKSTYVDALIELINQQTGRVHTQYRQIGAE-TGRLSSDSPNLQNIPVRSEEG 702 Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 E +R +A G L+ AD + IE RVLA + + Sbjct: 703 RE-------------------------IRRAFVARPGHVLMTADYSQIELRVLAHITADP 737 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++ F+TG+D++ T AR F++ +V+K+QR I K+ + Y G +F +A+ T Sbjct: 738 ALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIY--GISSF-GLAARTA 794 Query: 457 LN 458 L+ Sbjct: 795 LS 796 >gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44] gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44] Length = 937 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382 LP R H Q + ++DP+ LQ I VR +A EGK + AD + Sbjct: 658 LPSDGRVHTHYAQAVAVTGRLSSNDPN-LQNIPVRTPEGRRVREAFVAPEGKLIASADYS 716 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G++ L AF+ G D++ T A F V+ +V+ +QR KV+ L Y Sbjct: 717 QIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIY 775 >gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1] Length = 833 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%) Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206 F E ++ +F+ L P S E+ LW + + RG +DV L Sbjct: 400 FTEDAAERALLSERLFQNLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L+ ++ E +L+ E+ L G + ++L+ LF E GL T R + Sbjct: 459 LSFELEKEMERLEGEIFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 K+ T Q + A R A + +VE + LQ+ S+ P Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381 PR R H +Q T +SDP+ I + +R +A EG L+ AD Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+D++ T A F + PA V R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671 >gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63] gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] Length = 882 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P +R H +Q IT +++P+ P+++ + +R IA + KLV AD + + Sbjct: 604 PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQV 663 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R K + + Y Sbjct: 664 ELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIY 720 >gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1] gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1] Length = 965 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 124/286 (43%), Gaps = 52/286 (18%) Query: 170 EIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++F RLE PL L ++Q G +DV L + + E +++Q++ ++ G Sbjct: 549 DVFYRLEMPLVPV---LVRMEQA----GILLDVPYMRALGERMGRELEQIEQQIYAIA-G 600 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---------VFNN 279 + ++L LF G + +L T R + LT QA++ + Sbjct: 601 QTFNINSGDQLSEVLF---GPKI-NLPTTGLDRTRTGRYSLTAQALEELQASDTTGIIEL 656 Query: 280 RMRASRSAVLK---LNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R R + LK ++ L +N + GR+ LGA+ TGR S QN+P +R+ Sbjct: 657 ILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPNLQNIP--TRT 713 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 E + VR IA+ G L+ AD + IE RVLA M G+ Sbjct: 714 EEGRE-----------------------VRRGFIAAPGHLLIAADYSQIELRVLAHMTGD 750 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ F G D++ T AR F V + V K+QR I K + + Y Sbjct: 751 PNLIQTFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIY 796 >gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] Length = 949 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 P+ ++ H +Q + +S+P+ I + D +R IA G L+ AD + + Sbjct: 671 PKTNKIHTSFNQTVVSTGRLSSSNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQV 730 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ L AF +G+D++ T AR F V +VT D R K + Y G Sbjct: 731 ELRIMAHLSGDRNMLSAFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIY--G 788 Query: 445 AKAF 448 AF Sbjct: 789 ISAF 792 >gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1] gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1] Length = 937 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382 LP R H Q + ++DP+ LQ I VR +A EGK + AD + Sbjct: 658 LPSDGRVHTHYAQAVAVTGRLSSNDPN-LQNIPVRTPEGRRVREAFVAPEGKLIASADYS 716 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G++ L AF+ G D++ T A F V+ +V+ +QR KV+ L Y Sbjct: 717 QIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIY 775 >gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] Length = 887 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 19/179 (10%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R IA G K++ D + Sbjct: 608 PTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNQEGRRIRQAFIAPSGWKIMAVDYSQ 666 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L AF+ G+D++ T A V+ QVT +QR K + L Y Sbjct: 667 IELRIMAHLSGDPALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNFGLIY-- 724 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA----IEDLF 498 G AF +A G+ + H + + +E R+M+E A +E LF Sbjct: 725 GMSAF-GLAKQLGIPRSEAQHYMD-----KYFERYPGVLRYMEETRSMAAEQGYVETLF 777 >gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille] gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille] Length = 912 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 10/156 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G S+ P P R H Q + ++DP+ LQ I Sbjct: 612 LEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVAVTGRLASNDPN-LQNIPIRNAEG 670 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA+ G +V AD + IE R++A ++G++ L+AF GED++ T A F V Sbjct: 671 RRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENMLQAFADGEDIHRATAAEIFGVER 730 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V +QR KV+ L Y G AF +A G+ Sbjct: 731 RAVDSEQRRYAKVINFGLIY--GMSAF-GLAGNLGI 763 >gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355] Length = 928 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A +G ++V AD + Sbjct: 649 PVSGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF GED++ T + F V ++VT +QR K + L Y Sbjct: 708 IELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103] gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103] Length = 928 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A +G ++V AD + Sbjct: 649 PVSGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF GED++ T + F V ++VT +QR K + L Y Sbjct: 708 IELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI polymerase 1 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis] Length = 833 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%) Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206 F E ++ +F+ L P S E+ LW + + RG +DV L Sbjct: 400 FTEDAAERALLSERLFQNLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L+ ++ E +L+ E+ L G + ++L+ LF E GL T R + Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 K+ T Q + A R A + +VE + LQ+ S+ P Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381 PR R H +Q T +SDP+ I + +R +A EG L+ AD Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+D++ T A F + PA V R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671 >gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii] gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii] Length = 881 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIASEGKKLVVADLAG 383 P R H L+Q + ++DP+ LQ I +R IA G +L+ AD + Sbjct: 599 PETKRLHTSLNQTVAATGRLSSTDPN-LQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQ 657 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E R+LA ++ + L+ FE GED+++ T FN+ +VT+D R K + + Y Sbjct: 658 VEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVFGIVY-- 715 Query: 444 GAKAFQKMASTTGL 457 G F +AS G+ Sbjct: 716 GISPF-GLASNIGV 728 >gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] Length = 926 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR +A+ G KLV AD + IE R++A ++ + L AF G+D++ T A F V + Sbjct: 687 VRQAFVAAPGCKLVAADYSQIELRIMAHLSEDPSLLAAFSAGQDIHRATAAEVFGVENEE 746 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 VT DQR K + L Y G AF +A G+N A ++ Sbjct: 747 VTIDQRRSAKAINFGLIY--GMSAF-GLARQLGINRKQAAEYIE 787 >gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1] gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter sp. ADP1] Length = 920 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 648 RVHTSYHQALTATGRLSSSDPNLQNIPIRGEIGRQIRKAFIAPEGRILLAADYSQIELRL 707 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + ++ L AF+ G+D++ T A N+ +VT DQR K + L Y Sbjct: 708 MAHFSQDEALLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNFGLLY 760 >gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] Length = 912 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q + +SDP+ LQ I +R +A G KL+ AD + Sbjct: 634 PKTGRVHTSYHQAVAATGRLSSSDPN-LQNIPVRTAEGRRIRKAFVAEPGCKLLAADYSQ 692 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E R++A ++G++ +AF G D++ T A F +AP +V +QR K + L Y Sbjct: 693 VELRIMAHLSGDEGLRQAFAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINFGLIY 750 >gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2] Length = 833 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%) Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206 F E ++ +F+ L P S E+ LW + + RG +DV L Sbjct: 400 FTEDAAERALLSERLFQNLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L+ ++ E +L+ E+ L G + ++L+ LF E GL T R + Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 K+ T Q + A R A + +VE + LQ+ S+ P Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381 PR R H +Q T +SDP+ I + +R +A EG L+ AD Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+D++ T A F + PA V R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671 >gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12] gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12] Length = 917 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EGKK++ AD + IE R++A ++ ++ L AF G+D++ T A F+V + Sbjct: 677 IRHAFIAREGKKVLAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFDVDFGE 736 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 737 VTTEQRRRAKAVNFGLIY--GMSAF 759 >gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] Length = 893 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 35/228 (15%) Query: 221 ELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAI 274 +LE + Y L S + ++L LF + L + T+T T +VL +K P Sbjct: 532 DLEKIIYELAGSEFNINSPKQLSKILFEDLKLPIIKKTKTGYSTNAQVLEKLRKKHPIIE 591 Query: 275 QVFNNR-MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ R M +S L+ +L E ++ DGR+R T + + TGR S QNLP Sbjct: 592 KIERYREMYKLKSTYLE--SLEECIDEDGRIRSTFK-QNVTATGRLSSTEPNLQNLP--I 646 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 R+ E +R A +GK L+ AD + IE RVLA +A Sbjct: 647 RTEE-----------------------GRKIRKAFKADDGKVLIDADYSQIELRVLAHLA 683 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ +AF D++ T + F+ +VTK QR+ K + + Y Sbjct: 684 NDKKMQEAFSKDIDIHTKTASEVFSTPIDEVTKLQRSEAKAVNFGIIY 731 >gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803] gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803] Length = 942 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 61/104 (58%), Gaps = 3/104 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ V E L+ AD + IE R++A ++ E+ ++AF+ GED++ +T A+ FNV +V Sbjct: 704 KAFVPRDENYVLLAADYSQIELRIIAALSNEENMIQAFKDGEDIHASTAAKVFNVPLEEV 763 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 T++QR+ K + + Y G AF +++ T L+ + L+ T Sbjct: 764 TREQRSNAKTVNFGIIY--GVSAF-GLSNQTSLSRSESKELIDT 804 >gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] Length = 917 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 29/156 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++A+ SDGR+ T A+ TGR S QN+P + + + Sbjct: 632 LLKAVASDGRIHSTFNQTVAA-TGRLSSTDPNLQNIPVRTEAGRQ--------------- 675 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R +A EG + L+ AD + IE R++A ++ ++ ++AF TGEDL+ Sbjct: 676 ----------IRHAFVAGEGYETLMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFV 725 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A++F V +VT D R K M L Y G AF Sbjct: 726 GAKAFGVPIDEVTPDMRRRVKAMSYGLAY--GLSAF 759 >gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 576 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 2/134 (1%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R R + E QI +S+P+ +Q I +RS ASEG V+AD + IE R+ A Sbjct: 307 RNGRVYPEFRQIGAVTGRMSSSNPN-VQNIPRDMRSLFRASEGNLFVIADFSQIELRIAA 365 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ L+AF G DL+ T + ++TK++R + K M L Y A+ + Sbjct: 366 EYVQDENMLRAFREGRDLHRYTASLVLEKPEEEITKEERQLAKAMNFGLIYGISARGLSE 425 Query: 451 MA-STTGLNLNTFA 463 A S+ G+ L A Sbjct: 426 YARSSYGVELEIEA 439 >gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179] gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179] Length = 925 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 8/129 (6%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVA 379 PQ + P R H Q +T +SDP+ I + +R IA +G K+V A Sbjct: 643 PQMIDPNTGRVHTSYHQAVTITGRLSSSDPNLQNIPTRSEEGRKIRQAFIAPQGFKVVAA 702 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++ + AF G D++ +T A F+V QVT QR K + L Sbjct: 703 DYSQIELRIMAHLSADAGLAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAINFGL 762 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 763 IY--GMSAF 769 >gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 8/129 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380 P + SR H +QI T +S+P+ P++ +R +A EGK L+ D Sbjct: 231 PNLVDSNSRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSID 290 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELAL 439 + +E RVL M+ ++ +KA+ +DL+ T R FN++ + VT++QR I K++ ++ Sbjct: 291 YSQVELRVLTSMSKDENLIKAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSI 350 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 351 IY--GKTAF 357 >gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] Length = 927 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR H +Q +T +SDP+ LQ I +R C I EG + AD + Sbjct: 649 PRTGHIHTSFNQAVTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RV+A ++ + L AF G D++ T A+ +N ++VT+D+R K + Y Sbjct: 708 IELRVMAHLSQDANMLDAFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGIIY 765 >gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601] gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601] Length = 921 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + ++DP+ LQ I VR +A G+ + D + Sbjct: 643 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G++ L+AF G D++ T A F VA QVT +QR KV+ L Y Sbjct: 702 IELRIMAHISGDEALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIY 759 >gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 648 PTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKIMAIDYSQ 706 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L+AF+ G+D++ T A V +QVT +QR K + L Y Sbjct: 707 IELRIMAHLSGDRALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNFGLIY-- 764 Query: 444 GAKAF 448 G AF Sbjct: 765 GMSAF 769 >gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2] gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2] Length = 907 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 9/122 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q + +SDP+ LQ I +R IA G +V AD + IE Sbjct: 632 GRVHTSYSQAVAVTGRLASSDPN-LQNIPIRSAEGRRIREAFIAPSGSCIVAADYSQIEL 690 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++G+ L+AF ED++ T A F P VT +QR KV+ L Y G Sbjct: 691 RIMAHLSGDAGLLQAFAKNEDVHRATAAEIFMTTPVDVTTEQRRYAKVINFGLIY--GMS 748 Query: 447 AF 448 AF Sbjct: 749 AF 750 >gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 677 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 376 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 434 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 435 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 494 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 495 DQVSSEQRRRAKAVNFGLIY--GMSAF 519 >gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] Length = 843 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 46/78 (58%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R AS G+ LVVAD + IE R+LA M+ E ++AF+ GED++ T A F+V P Sbjct: 600 IRDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPES 659 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K++ + Y Sbjct: 660 VTPELRRRAKMVNFGILY 677 >gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1] gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1] Length = 911 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q +T +SDP+ LQ I +R+ IA G L+ AD + Sbjct: 633 PYTGRVHTSYNQAVTLTGRLSSSDPN-LQNIPIRTEEGRAIRTAFIAPAGWSLLAADYSQ 691 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA M +AF G D++ T A F V AQVT + R + K + L Y Sbjct: 692 IELRVLAHMGNVSRLKEAFHAGLDIHAATAAELFGVPLAQVTGEHRRMAKTINFGLVY 749 >gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 883 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 13/163 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q I +++P+ P+++ I +R IA +G LV +D + I Sbjct: 605 PNTERIHSSFNQTIAATGRISSTEPNLQNIPVRLEIGRNLRKAFIARQGCVLVDSDYSQI 664 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA ++ E+ ++AF D++ T + F V ++VTK+QR K + + Y G Sbjct: 665 ELRVLAHISDEEALIQAFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVY--G 722 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 F +++ G+ +KT + +N ++MQ+ Sbjct: 723 ISDF-GLSNNLGITKKKAGQYIKTY-----LDRYKNIEKYMQD 759 >gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC] gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC] Length = 921 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + ++DP+ LQ I VR +A G+ + D + Sbjct: 643 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G++ L+AF G D++ T A F VA QVT +QR KV+ L Y Sbjct: 702 IELRIMAHISGDEALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIY 759 >gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 882 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAG 383 P + H Q +T+ +SDP+ P+++ +R I + L++ AD + Sbjct: 601 PETGKLHTTFHQTVTNTGRLSSSDPNLQNIPIRLEAGRLIRKVFIPGRPENLLLTADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA ++G+ +KAF+ GED++ T A F V P +VT++ R K + + Y Sbjct: 661 IELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVY 718 >gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis] Length = 833 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%) Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206 F E ++ +F+ L P S E+ LW + + RG +DV L Sbjct: 400 FTEDAAERALLSERLFQNLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L+ ++ E +L+ E+ L G + ++L+ LF E GL T R + Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGL-------TPVGRTEKTG 510 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 K+ T Q + A R A + +VE + LQ+ S+ P Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381 PR R H +Q T +SDP+ I + +R +A EG L+ AD Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+D++ T A F + PA V R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671 >gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 898 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 7/129 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGI 384 P R H Q IT++PD P++ VR + G KL+ AD + I Sbjct: 618 PDSGRIHATFQQTAGVSGRLITTEPDLQRTPIKTPEGKRVRQAFVTRPGYKLISADWSQI 677 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV--APAQVTKDQRAIGKVMELALGYQ 442 E R+LA + + ++AF G D++ T A+ F V P +V+++QR +GK++ A Y Sbjct: 678 ELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEVGGGPEKVSREQRGVGKLVNFATIYG 737 Query: 443 GGAKAFQKM 451 GA A ++ Sbjct: 738 QGATALGQI 746 >gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2] Length = 892 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R V+ EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGVVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] Length = 836 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 365 RSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 R C++ EG V AD + IE RVLA ++GE+ ++AFE G D++ T + + V P Sbjct: 600 RRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVHARTASWIYGVDPQA 659 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF-QKMA 452 V+ +QR KV+ L Y GA Q+M Sbjct: 660 VSPEQRRFAKVVNFGLLYGMGAHGLAQRMG 689 >gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 895 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 37/230 (16%) Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 YG++ L ++L+ LF E G+ T+T + + L + F M Sbjct: 539 YGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLE 598 Query: 284 SRSAV-LK--LNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R A LK ++ LV+++ DGR+ TL Q + A TGR S QN+P R+ E Sbjct: 599 HRDATRLKTTVDGLVKSIADDGRIHTTLNQTIAA--TGRLSSTEPNLQNIP--IRTEE-- 652 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 +R + EG +L+ AD + IE R++A ++G++ Sbjct: 653 ---------------------GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGL 691 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++AF TGEDL+ +R+F V +V + R K M L Y G AF Sbjct: 692 IEAFRTGEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAY--GLSAF 739 >gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB] gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB] Length = 928 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A++G ++V AD + Sbjct: 649 PISGRVHTSYHQAVTATGRLSSADPN-LQNIPVRNDEGRRIRQAFVAAKGHRIVAADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF GED++ T + F VA +V+ +QR K + L Y Sbjct: 708 IELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALDKVSGEQRRSAKAINFGLIY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10] Length = 986 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 136/340 (40%), Gaps = 51/340 (15%) Query: 173 KRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 K+LE L KE L++++Q G CV H + + V+ +L+QE+ Sbjct: 575 KKLEELDMKELFYTIEMPLIFSLFHMEQA----GICVKREELHDYGEKLRVQIERLEQEI 630 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNR 280 T G + ++L LF + L T+T +KL P+ +Q + Sbjct: 631 YGET-GEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDY 689 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ + L + DGR+ GT Q + A TGR S QN+P E Sbjct: 690 RQLTKLKSTYADGLAGYIREDGRIHGTFNQTITA--TGRLSSTEPNLQNIPVRMELGRE- 746 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +R + EG V AD + IE RVLA M+G++ + Sbjct: 747 ------------------------IRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLI 782 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A+ ED++ T + F+V +VT QR K + + Y G AF + L++ Sbjct: 783 EAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVY--GISAF---GLSEDLSI 837 Query: 460 NTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHAIEDLF 498 L N E + D + F R ++E + + +F Sbjct: 838 TRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVTTMF 877 >gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113] gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113] Length = 901 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 15/167 (8%) Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------ 360 TL L ++ T R P Q P R H Q +T +SDP+ LQ I Sbjct: 605 TLSKLKSTYTDR-----LPLQVNPHTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRTAE 658 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IA G +LV AD + IE R++A ++ ++ L AFE ED++ T F Sbjct: 659 GRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEVFRTP 718 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +VT +QR K + L Y A + G+N H ++ Sbjct: 719 LEEVTPEQRRSAKAINFGLIYGMSAHG---LGRQLGINRTAAQHYIE 762 >gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN] gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN] Length = 926 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 7/119 (5%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382 LPR R H Q + ++DP+ LQ I VR +A G + AD + Sbjct: 647 LPRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTAEGRRVREAFVAPPGCVIASADYS 705 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ L AF G D++ T A F VA QVT +QR KV+ L Y Sbjct: 706 QIELRIMAHISGDHALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIY 764 >gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS] gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS] Length = 937 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + ++DP+ LQ I VR +A G + AD + Sbjct: 659 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTPEGRRVREAFVAPAGSVIASADYSQ 717 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L+AF G D++ T A F P QV+ +QR KV+ L Y Sbjct: 718 IELRIMAHISGDESLLRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIY-- 775 Query: 444 GAKAFQKMASTTGLNLNTFAHLVK 467 G +F +A G+ A ++ Sbjct: 776 GMSSF-GLAKNLGIETKAAASYIE 798 >gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 894 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 37/230 (16%) Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 YG++ L ++L+ LF E G+ T+T + + L + F M Sbjct: 538 YGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLE 597 Query: 284 SRSAV-LK--LNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R A LK ++ LV+++ DGR+ TL Q + A TGR S QN+P R+ E Sbjct: 598 HRDATRLKTTVDGLVKSIADDGRIHTTLNQTIAA--TGRLSSTEPNLQNIP--IRTEE-- 651 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 +R + EG +L+ AD + IE R++A ++G++ Sbjct: 652 ---------------------GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGL 690 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++AF TGEDL+ +R+F V +V + R K M L Y G AF Sbjct: 691 IEAFRTGEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAY--GLSAF 738 >gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822] gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822] Length = 966 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 10/136 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P+ R H + +Q +T +S+P+ P++ S +R I EG LV AD + I Sbjct: 674 PKTGRVHTDFNQTVTTTGRLSSSNPNLQNIPIKTEFSRQIRQAFIPEEGWLLVSADYSQI 733 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA + E ++A++ +D++ T F+ A +T ++R+IGK + + Y G Sbjct: 734 ELRILAHLTQEPLLVEAYQNYQDVHRVTAQLLFD--KANITSEERSIGKTINFGVIYGMG 791 Query: 445 AKAFQKMASTTGLNLN 460 A Q+ A GL++ Sbjct: 792 A---QRFARAFGLSVQ 804 >gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] Length = 948 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 97/412 (23%), Positives = 170/412 (41%), Gaps = 59/412 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ +++ V VAHN+ F+ VL R+ GLP A L Sbjct: 406 LKDLMQDERVLKVAHNAKFDLEVLT----------RY----------GLPEAHPLYDTML 445 Query: 117 KLSSQKMEEG---KELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTV 167 ++G EL + +T Y P A R L +Y D V Sbjct: 446 AHYLIDADQGHSLDELAGGLLRYDT--IRYKDLAPQESFALRTDVDPKLLCDYASEDAYV 503 Query: 168 TREIF----KRLEP-----LSSKEQELWYLDQTINDRGYCVDV-ALAHTLNQIVDVERTK 217 T ++ K+L P L+ E L Y+ + RG +D+ AL + ++++ + Sbjct: 504 TLRLYHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLE-SVLR 562 Query: 218 LDQELESLTY-GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP-QAIQ 275 L++E++S + GL +++ LF E + +E +T +++ + L P +++ Sbjct: 563 LEKEIQSYSSRGLNLKVNSPKQIGELLFDELKI-MEKPRKTKTGNYVTNEETLLPLRSLH 621 Query: 276 VFNNRMRASRSAVLKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + R A LNT ++ + DG+L + + TGR S QN+P Sbjct: 622 PVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIPI 680 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE--GKKLVVADLAGIEARVL 389 S L + + +DP +S C E G L+ AD + +E RV+ Sbjct: 681 RSDLGRPLRR-------AFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADYSQVELRVM 733 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A ++ + + +F +G+D++ T A+ F VAP +VT R+ K + Y Sbjct: 734 AHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785 >gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] Length = 911 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I +R +A EG++++ AD + Sbjct: 633 PDTGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRRIRQAFVAPEGRRILAADYSQ 691 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L+AF G D++ T A F V VT DQR K + L Y Sbjct: 692 IELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELNDVTVDQRRKAKAINFGLIY-- 749 Query: 444 GAKAF 448 G AF Sbjct: 750 GMSAF 754 >gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1] Length = 833 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 43/300 (14%) Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHT 206 F E ++ +F+ L P S E+ LW + + RG +DV L Sbjct: 400 FTEDAAERALLSERLFQTLFPRLS-EKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L+ ++ E +L+ E+ L G + ++L+ LF E GL T R + Sbjct: 459 LSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLEKVLFDELGL-------TPVGRTEKTG 510 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 K+ T Q + A R A + +VE + LQ+ S+ P Sbjct: 511 KRSTAQGA------LEALRGA----HPIVELI---------LQYRELSKLKSTYLDPLPR 551 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381 PR R H +Q T +SDP+ I + +R +A EG L+ AD Sbjct: 552 LVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+D++ T A F + PA V R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671 >gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129] gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae] Length = 899 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 40/261 (15%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS----RCLEKLKTWLFLETGLHL 251 G CVDVA TL + D+ ++ +E ES L ++L+ LF GL Sbjct: 513 GICVDVA---TLREQRDIFVEQVKEE-ESAARELAGDETLNLSSPKQLQVVLFDTLGLPK 568 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR---SAVLKLNTLVEAMNSDGRLRGTL 308 T+T + L + F + + A R L+ L++A+ DGR+ T Sbjct: 569 TKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHREFQKMKTTLDGLIKAVGDDGRIHTTF 628 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368 AS TGR S QN+P + + + +RS Sbjct: 629 NQTVAS-TGRLSSTEPNLQNIPVRTPAGRK-------------------------IRSAF 662 Query: 369 IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + +G K L+ AD + IE RV+A ++ + ++A++TGEDL+ ++ F+V QVT + Sbjct: 663 VVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTGEDLHNFVGSKVFDVPVDQVTPE 722 Query: 428 QRAIGKVMELALGYQGGAKAF 448 R K M L Y G AF Sbjct: 723 LRRRVKAMSYGLVY--GLSAF 741 >gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] Length = 931 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 689 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 749 DQVSSEQRRRAKAVNFGLIY--GMSAF 773 >gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 917 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 10/156 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G S+ P P R H Q + ++DP+ LQ I Sbjct: 617 LEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTGRLSSNDPN-LQNIPIRNAEG 675 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA G +V AD + IE R++A ++ ++ L+AF GED++ T A F VA Sbjct: 676 RRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGEDIHRATAAEIFGVAR 735 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V+ +QR KV+ L Y G AF +A G+ Sbjct: 736 GDVSSEQRRYAKVINFGLIY--GMSAF-GLAGNLGI 768 >gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01] gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01] Length = 937 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T ++DP+ LQ I +R +A G K++ D + IE Sbjct: 661 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIEL 719 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++G++ L+AF+ G+D++ T A VA QVT +QR K + L Y G Sbjct: 720 RIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIY--GMS 777 Query: 447 AFQKMASTTGLNLNTFAHLVKT 468 AF +A G+ H + T Sbjct: 778 AF-GLAKQLGIPRGEAQHYMDT 798 >gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032] gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032] Length = 899 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L+++++ DGR+ T A+ TGR S QN+P R+ E Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP--IRTEE------------- 654 Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + EG + L+ AD + IE R++A ++G++ ++AF +G D + Sbjct: 655 ----------GRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALIEAFNSGHDFH 704 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 T + F VA A+VT DQR K M L Y G AF Sbjct: 705 AATASSVFEVAVAEVTPDQRRKIKAMNYGLAY--GLSAF 741 >gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411] gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411] Length = 801 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 6/128 (4%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQI------ISDCVRSCVIASEGKKLVVADLA 382 + + +R H +Q +T +S+P+ + + +R V+A +G KL+ +D + Sbjct: 523 MDKSNRLHTTFNQTLTSTGRLSSSNPNLQNLPAGDDELHSGIRKSVVAPKGYKLICSDYS 582 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA M+ ++ ++ F+ ED++ T + F V P+ V R + K + + Y Sbjct: 583 QIELRVLAQMSKDKTLIEIFKNNEDIHTQTAVKIFGVHPSMVDHHLRRMAKTINFGIIYG 642 Query: 443 GGAKAFQK 450 G + K Sbjct: 643 MGYVSLSK 650 >gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] Length = 1040 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 134/308 (43%), Gaps = 48/308 (15%) Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV--DVERTKLDQELESLTYGL 229 ++R+ L E L L + + D G VD L +Q + +V+RT+ E++ + Sbjct: 631 YRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEA-AAFEAIGREV 689 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTP----QAIQVFNNRMR 282 SS ++L+ LF + GL T+T T + L P QA+ F +R Sbjct: 690 NLSSP--KQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDR-- 745 Query: 283 ASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340 S +L++ L + + SDGR+ T A+ TGR S QN+P R + Sbjct: 746 ---SKLLQVVRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDGARIRE 801 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 I +P +S L+ AD + IE R++A ++G++ + Sbjct: 802 TFIAQMP-----------FVS--------------LMTADYSQIEMRIMAHLSGDEGLIA 836 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++GEDL+ + A F VAP VT QR K L Y G AF +A ++ Sbjct: 837 AFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAY--GLSAF-GLAGQLRISQG 893 Query: 461 TFAHLVKT 468 HL++T Sbjct: 894 EAKHLMET 901 >gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3] gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3] Length = 930 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 629 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 687 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +AS G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 688 RRIRQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 V+ +QR K + L Y G AF Sbjct: 748 EDVSSEQRRRAKAVNFGLIY--GMSAF 772 >gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168] gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168] Length = 870 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 8/125 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376 PP P R H +Q++T +++P+ LQ I + R+ + +E L Sbjct: 580 LPPMINPDTGRLHTSFNQMVTATGRLSSTEPN-LQNIPVRTDEGREIRRAFITENEDWVL 638 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RVLA ++ ++ AF TG+D++ T + F V P +VT + R KV+ Sbjct: 639 LAADYSQIELRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVIN 698 Query: 437 LALGY 441 + Y Sbjct: 699 FGIAY 703 >gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] Length = 931 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 689 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 749 DQVSSEQRRRAKAVNFGLIY--GMSAF 773 >gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121] gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121] Length = 925 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 9/129 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379 P+ + + R H Q +T ++DP+ LQ I +R IA EG KL+ A Sbjct: 643 PEMIQKTGRIHTSYHQAVTATGRLSSTDPN-LQNIPIRTAEGRRIRQAFIAPEGYKLIAA 701 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+++ ++ + L+AF +D++ T A F VA +VT +QR K + L Sbjct: 702 DYSQIELRIMSHLSQDPGLLEAFANNKDVHKATAAEVFEVALDEVTGEQRRRAKAINFGL 761 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 762 IY--GMSAF 768 >gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] Length = 948 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 97/412 (23%), Positives = 170/412 (41%), Gaps = 59/412 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ +++ V VAHN+ F+ VL R+ GLP A L Sbjct: 406 LKDLMQDERVLKVAHNAKFDLEVLT----------RY----------GLPEAHPLYDTML 445 Query: 117 KLSSQKMEEGK---ELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTV 167 ++G EL + +T Y P A R L +Y D V Sbjct: 446 AHYLIDADQGHSLDELAGGLLRYDT--IRYKDLAPQESFALRTDVDPKLLCDYASEDAYV 503 Query: 168 TREIF----KRLEP-----LSSKEQELWYLDQTINDRGYCVDV-ALAHTLNQIVDVERTK 217 T ++ K+L P L+ E L Y+ + RG +D+ AL + ++++ + Sbjct: 504 TLRLYHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLE-SVLR 562 Query: 218 LDQELESLTY-GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP-QAIQ 275 L++E++S + GL +++ LF E + +E +T +++ + L P +++ Sbjct: 563 LEKEIQSYSSRGLNLKVNSPKQIGELLFDELKI-MEKPRKTKTGNYVTNEETLLPLRSLH 621 Query: 276 VFNNRMRASRSAVLKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + R A LNT ++ + DG+L + + TGR S QN+P Sbjct: 622 PVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIPI 680 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE--GKKLVVADLAGIEARVL 389 S L + + +DP +S C E G L+ AD + +E RV+ Sbjct: 681 RSDLGRPLRR-------AFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADYSQVELRVM 733 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A ++ + + +F +G+D++ T A+ F VAP +VT R+ K + Y Sbjct: 734 AHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785 >gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] Length = 929 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 628 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNDEG 686 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA G K++ D + IE R++A ++G+Q L AF+ G+D++ T A Sbjct: 687 RRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTTI 746 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 747 DQVSSEQRRRAKAVNFGLIY--GMSAF 771 >gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont] Length = 929 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T ++DP+ LQ I +R IA K++V Sbjct: 645 PQMINPITGRVHTSYHQAVTATGRLSSNDPN-LQNIPVRNEEGRRIRQAFIAGADKRIVA 703 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ ++ L AF GED++ T + F VA ++V+ +QR K + Sbjct: 704 ADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFG 763 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 764 LIY--GMSAF 771 >gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329] Length = 930 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 629 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 687 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 688 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 748 DQVSSEQRRRAKAVNFGLIY--GMSAF 772 >gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] Length = 830 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P+ +R H +Q T +SDP+ I + +R +A EG +LVV D + I Sbjct: 553 PKTNRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWRLVVLDYSQI 612 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G+D++ T + F V P V R K + + Y Sbjct: 613 ELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLY 669 >gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33] gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33] Length = 912 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 16/244 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387 SR H +QI T +SDP+ P++ +R +A EGK L+ D + +E R Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELR 695 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446 VL M+ ++ ++A++ +DL+ T R FN++ ++ V+++QR I K++ ++ Y G Sbjct: 696 VLTSMSKDENLIEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 F +A + + + +K E++ +F R + E EH ++ T R Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTSFEREVIEFGEEHG----YVKTLFGR- 805 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K+ S+ + ++ + T+ G A K+ V + + KDK ++ L+L Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHD 865 Query: 567 SLVY 570 L++ Sbjct: 866 ELIF 869 >gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 814 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 35/223 (15%) Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 YG++ L ++L+ LF E G+ T+T + + L + F + A Sbjct: 529 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 588 Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L++A+ +DGR+ T Q + A TGR S QN+P Sbjct: 589 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 637 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 I +D +R + +G +L+ AD + IE R++A ++G++ Sbjct: 638 ----------IRTD------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 681 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 682 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 724 >gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70] gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70] Length = 930 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA EG +++ AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++ ++ + AF G+D++ +T A F + AQV+ +QR K + L Y G + Sbjct: 716 IMAHLSQDKGLINAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIY--GMSS 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] Length = 865 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ + +G KL+VAD + IE R+LA M+G++ ++AF GED++ T A V P Sbjct: 626 IRAAFVPRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLM 685 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT + R K + + Y G AF +A+ G+ Sbjct: 686 VTPEARRDAKAVNFGIVY--GISAF-GLAAQLGIG 717 >gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] Length = 948 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 11/175 (6%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-- 361 ++ L F G S+ P Q R H + Q + +++P+ LQ I Sbjct: 643 IQQVLDFRGLSKLKSTYVDALPLQVDESTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIR 701 Query: 362 -----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 ++ V E L+ AD + IE R++A ++ E+ ++AF+ GED++ +T ++ Sbjct: 702 TERGRQVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKNGEDIHASTASKV 761 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 FNV +VT++QR+ K + + Y G AF +++ T L+ + L++T A Sbjct: 762 FNVPITEVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLSRSEAKELIETYYA 813 >gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G S+ P P R H Q + ++DP+ LQ I Sbjct: 611 LEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTGRLSSNDPN-LQNIPIRNAEG 669 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA G +V AD + IE R++A ++ ++ L+AF GED++ T A F VA Sbjct: 670 RRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGEDIHRATAAEIFGVAR 729 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 V+ +QR KV+ L Y G AF Sbjct: 730 GDVSSEQRRYAKVINFGLIY--GMSAF 754 >gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] Length = 896 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------ 360 +L L ++ T + G V P + R H Q + +SDP+ LQ I Sbjct: 600 SLSKLKSTYTDKLPGMVNP-----QTGRVHTSYHQAVAATGRLSSSDPN-LQNIPIRTEE 653 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IA +G ++V AD + IE R++A ++ + L AF+ G+D++ T A F V+ Sbjct: 654 GRRIRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSLLTAFKEGQDVHRATAAEVFEVS 713 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAF 448 +V+ DQR K + L Y G AF Sbjct: 714 LDEVSGDQRRKAKAINFGLIY--GMSAF 739 >gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328] gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328] Length = 875 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 26/160 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ +V+ + DG++ T Q ++TGR S QN+P R+ E Sbjct: 589 IDGMVDLIKKDGKIHTTFQ-QTIAQTGRISSTNPNLQNIP--IRTEE------------- 632 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + SEG L+ AD + IE RVLA +A ++ L AF+ G D++ Sbjct: 633 ----------GRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHR 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 T + F V +VT QR+ K + + Y G + K Sbjct: 683 KTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSLSK 722 >gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1] gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1] Length = 1040 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 134/308 (43%), Gaps = 48/308 (15%) Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV--DVERTKLDQELESLTYGL 229 ++R+ L E L L + + D G VD L +Q + +V+RT+ E++ + Sbjct: 631 YRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEA-AAFEAIGREV 689 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTP----QAIQVFNNRMR 282 SS ++L+ LF + GL T+T T + L P QA+ F +R Sbjct: 690 NLSSP--KQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDR-- 745 Query: 283 ASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340 S +L++ L + + SDGR+ T A+ TGR S QN+P R + Sbjct: 746 ---SKLLQVVRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDGARIRE 801 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 I +P +S L+ AD + IE R++A ++G++ + Sbjct: 802 TFIAQMP-----------FVS--------------LMTADYSQIEMRIMAHLSGDEGLIA 836 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++GEDL+ + A F VAP VT QR K L Y G AF +A ++ Sbjct: 837 AFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAY--GLSAF-GLAGQLRISQG 893 Query: 461 TFAHLVKT 468 HL++T Sbjct: 894 EAKHLMET 901 >gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b] gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b] Length = 928 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R IA K++V AD + Sbjct: 649 PVTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFIAGPDKRIVAADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF GED++ T + F VA ++V+ +QR K + L Y Sbjct: 708 IELRIMAHLSQDKGLLAAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987] gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A] gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85] gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210] gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148] Length = 904 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 35/223 (15%) Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 YG++ L ++L+ LF E G+ T+T + + L + F + A Sbjct: 546 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 605 Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L++A+ +DGR+ T Q + A TGR S QN+P Sbjct: 606 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 654 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 I +D +R + +G +L+ AD + IE R++A ++G++ Sbjct: 655 ----------IRTD------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 698 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 699 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 741 >gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908] gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908] Length = 945 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EGKK++ AD + IE R++A ++ ++ L AF G+D++ T A F V ++ Sbjct: 705 IRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVDFSE 764 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 765 VTTEQRRRAKAVNFGLIY--GMSAF 787 >gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 180 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G K+V AD + IE R++A +A ++ + AF G+D++ T A F +A Q Sbjct: 11 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 70 Query: 424 VTKDQRAIGKVMELALGY 441 VT +QR K + L Y Sbjct: 71 VTSEQRRSAKAINFGLIY 88 >gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1] Length = 897 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 79/316 (25%), Positives = 135/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ TKL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA + Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LKAF D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11] gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11] gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11] Length = 912 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 16/244 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387 SR H +QI T +SDP+ P++ +R +A EGK L+ D + +E R Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELR 695 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446 VL M+ ++ ++A++ +DL+ T R FN++ ++ V+++QR I K++ ++ Y G Sbjct: 696 VLTSMSKDENLIEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 F +A + + + +K E++ +F R + E EH ++ T R Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTSFEREVIEFGEEHG----YVKTLFGR- 805 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K+ S+ + ++ + T+ G A K+ V + + KDK ++ L+L Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHD 865 Query: 567 SLVY 570 L++ Sbjct: 866 ELIF 869 >gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99] gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99] Length = 917 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EGKK++ AD + IE R++A ++ ++ L AF G+D++ T A F+V + Sbjct: 677 IRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGLLTAFAAGKDIHRATAAEVFDVDFDE 736 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 737 VTTEQRRRAKAVNFGLIY--GMSAF 759 >gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87] gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87] Length = 941 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 4/106 (3%) Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 VR I S+ L+ AD + IE R++A ++ E+ +KAF+ GED++ +T ++ FNV Sbjct: 701 VRKAFIPRSDDYVLLAADYSQIELRIIAALSEEETMIKAFKDGEDIHASTASQVFNVPLE 760 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +VT++QR+ K + + Y G AF +++ T L+ + L+ T Sbjct: 761 EVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTSLSRSESKELIDT 803 >gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799] gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799] Length = 922 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379 PQ + R H Q +T +SDP+ LQ I +R IA EG KL+ Sbjct: 639 PQLVKPSGRVHTSYHQAVTATGRLSSSDPN-LQNIPIRTAEGRRIRQAFIAPEGYKLLAI 697 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++ ++ L+AF G+D++ T A F V VT +QR K + L Sbjct: 698 DYSQIELRIMAHLSQDKGLLEAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNFGL 757 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 758 IY--GMSAF 764 >gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1] gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1] Length = 912 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 16/244 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387 SR H +QI T +SDP+ P++ +R +A EGK L+ D + +E R Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELR 695 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446 VL M+ ++ ++A++ +DL+ T R FN++ ++ V+++QR I K++ ++ Y G Sbjct: 696 VLTSMSKDENLIEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 F +A + + + +K E++ +F R + E EH ++ T R Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTSFEREVIEFGEEHG----YVKTLFGR- 805 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K+ S+ + ++ + T+ G A K+ V + + KDK ++ L+L Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHD 865 Query: 567 SLVY 570 L++ Sbjct: 866 ELIF 869 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLA 382 F P P R H QI +P+ QI D R+C A G+KL++AD + Sbjct: 308 FTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNIQQIPRDSEFRACFAAPPGRKLILADYS 367 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RV A ++G+ + A++ GEDL++ T + + +++ +R K + L + Sbjct: 368 QIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFG 427 Query: 443 GGAKAFQKMA 452 GA Q+ A Sbjct: 428 MGAPGLQQYA 437 >gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] Length = 909 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q I ++DP+ I + +R +A +G KLV AD + + Sbjct: 631 PLDGRIHSSFNQAIATTGRISSTDPNMQNIPVRTDLGRQLRRVFVAGQGSKLVDADYSQV 690 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA M+G++ ++AF+ G D++ T ++ F V +V+ + R+ K + + Y Sbjct: 691 ELRVLADMSGDEDMIEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGIIY 747 >gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97] gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11] gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503] gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A] gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85] gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207] gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506] gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475] gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv] gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97] gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11] gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A] gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207] gi|740010|prf||2004291B DNA polymerase I Length = 904 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 35/223 (15%) Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 YG++ L ++L+ LF E G+ T+T + + L + F + A Sbjct: 546 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 605 Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L++A+ +DGR+ T Q + A TGR S QN+P Sbjct: 606 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 654 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 I +D +R + +G +L+ AD + IE R++A ++G++ Sbjct: 655 ----------IRTD------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 698 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 699 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 741 >gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] Length = 897 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 79/316 (25%), Positives = 135/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ TKL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA + Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LKAF D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] Length = 903 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 35/223 (15%) Query: 227 YGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 YG++ L ++L+ LF E G+ T+T + + L + F + A Sbjct: 545 YGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLA 604 Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + ++ L++A+ +DGR+ T Q + A TGR S QN+P Sbjct: 605 HRDVTRLKVTVDGLLQAVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP--------- 653 Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 I +D +R + +G +L+ AD + IE R++A ++G++ Sbjct: 654 ----------IRTD------AGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGL 697 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 698 IEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 740 >gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 882 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 34/211 (16%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+ LF E G+ T+T + + L + F M R A KL T VE Sbjct: 537 KQLQVVLFDELGMPKTKRTKTGYTTDAEALQGLFEKTEHPFLQHMLEHRDAT-KLRTTVE 595 Query: 297 AM----NSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + DGR+ TL Q + A TGR S QN+P R+ E Sbjct: 596 GLIKSVADDGRIHTTLLQTIAA--TGRLSSTEPNLQNIP--VRTEE-------------- 637 Query: 352 SDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + EG +L+ AD + IE R++A ++ ++ ++AF +GEDL+ Sbjct: 638 ---------GRRIRDAFVVGEGFTELMTADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHT 688 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R+F++ P ++T + R K M L Y Sbjct: 689 FVASRAFSMPPEEITPELRYRVKAMSYGLAY 719 >gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] Length = 933 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 21/155 (13%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +++ DGR+ T Q + A+ TGR S QN+P + + + P + D Sbjct: 642 LRKSVADDGRIHTTYQQMIAA-TGRLSSTDPNLQNIPIRTEEGRRIREAFVVGPDAGAGD 700 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +C L+ AD + IE R++A ++G++ + AF +GEDL+ Sbjct: 701 G------YEC------------LLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVG 742 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F VAP VT + RA K M L Y G AF Sbjct: 743 SRVFGVAPVDVTPEMRAKIKAMSYGLAY--GLSAF 775 >gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1] gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1] Length = 932 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 631 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 689 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA G K++ D + IE R++A ++G++ L AF+ G+D++ T A V Sbjct: 690 RRIRQAFIAPHGWKILAVDYSQIELRIMAHLSGDKALLDAFKNGKDIHAATAAEIIGVDI 749 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QVT +QR K + L Y G AF Sbjct: 750 DQVTSEQRRRAKAINFGLIY--GMSAF 774 >gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 914 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 16/251 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380 P + SR H +QI T +SDP+ P++ +R IA EGK L+ D Sbjct: 631 PLLVDENSRIHTSFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFIAGEGKVLMSID 690 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELAL 439 + +E RVL M+ ++ ++A+ +DL+ T R FN+A ++ V+++QR I K++ ++ Sbjct: 691 YSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLADSETVSREQRTIAKIINFSI 750 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G F +A + + + +K E++ F + + E EH ++ Sbjct: 751 IY--GKTPFG-LAKELKIPVKDASEYIK--KYFEQYPRVTTFEKEVIEFGEEHG----YV 801 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T R K+ S+ + ++ + T+ G A K+ V + + KDK ++ Sbjct: 802 KTLFGR-KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIA 860 Query: 560 LMLPSGRSLVY 570 L+L L++ Sbjct: 861 LLLQVHDELIF 871 >gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto str. T04001] gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto str. T04001] Length = 607 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 75/360 (20%), Positives = 137/360 (38%), Gaps = 96/360 (26%) Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR + QN+PRP D D +I R+ + G Sbjct: 317 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 351 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 K L D +G E R++AW +G++ ++ F TG D++ T + + A++ K +R K Sbjct: 352 KILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 411 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + Y G EHA Sbjct: 412 AGNFGISYGG----------------------------------------------TEHA 425 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551 ++ F + K R+ +++ N + A+++ E + I+ AR++ V +Y Sbjct: 426 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 478 Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +LP S RD G+ R NT + + K+ I +++ + Sbjct: 479 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 529 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667 EG+++ A D++ +HDEI+ E D E ++ + +M P +P++AEG Sbjct: 530 -EGVLSHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 586 >gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9] Length = 960 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 56/268 (20%) Query: 201 VALAHTLNQIVDVERTKLDQELESLT-------------YGLVSSSRCLEKLKTWLFLET 247 VAL H + V+R +LD+ LE T G + + ++L LF E Sbjct: 559 VALFHMEHTGASVDRARLDELLEMFTDESNRMEQICYEAAGHEVNLQSPKQLGVVLFEEM 618 Query: 248 GLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLK----------LNTLV 295 GL + T+ T + S+N K T A +R A+L+ + TL+ Sbjct: 619 GL---NPTKKTKRGSYSTNAKALTTLYATSEEGSRPNEFLGALLRHREVNKLRQIVQTLI 675 Query: 296 EAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +A+N DGR+ T A+ TGR S QN+P + + + Sbjct: 676 DAINPRDGRIHTTFTQTVAA-TGRLSSVDPNLQNIPNRNATGRD---------------- 718 Query: 355 DPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +RS + EG L+ AD + +E R++A ++G++ +KAF++G D + Sbjct: 719 ---------IRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADFHRYVA 769 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + +VT DQR K M L Y Sbjct: 770 SMVYGIPVDEVTPDQRNHVKAMSYGLAY 797 >gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] Length = 930 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G K+V AD + IE R++A ++ ++ L AF G+D++ T A F V + Sbjct: 691 IRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGVPLDE 750 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT DQR K + L Y G AF Sbjct: 751 VTSDQRRSAKAINFGLIY--GMSAF 773 >gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] Length = 938 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G K+V AD + IE R++A ++ ++ L AF TG+D++ T + F+V + Sbjct: 698 IRQAFIAQPGYKIVAADYSQIELRIMAHLSQDKGLLDAFSTGKDIHKATASEVFSVPLDE 757 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 758 VTTEQRRSAKAINFGLIY--GMSAF 780 >gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429] gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429] Length = 890 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 +V AD + IE RVLA M+ ++ L AFE D++ T ++ FNV+ VT+D R IGK++ Sbjct: 666 IVGADYSQIELRVLAHMSEDEKLLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMI 725 Query: 436 ELALGYQGGAKAFQKMASTTGLNLN 460 A+ Y G + ++ GLN+N Sbjct: 726 NFAIIY--GISPYG-LSRRIGLNVN 747 >gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] Length = 931 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNDEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA G K++ D + IE R++A ++G++ L AF+ G+D++ T A V Sbjct: 689 RRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIIGVDI 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 749 EQVSAEQRRRAKAVNFGLIY--GMSAF 773 >gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] Length = 932 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G +++ AD + Sbjct: 653 PISGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ +Q L AF G+D++ T A F + +VT DQR K + L Y Sbjct: 712 IELRIMAHLSQDQGLLTAFAAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16] gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16] Length = 938 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G +V AD + IE R++A ++G++ L+AF GED++ T F V Sbjct: 699 IREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREA 758 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 V+ +QR KV+ L Y G AF +A G+ H + Sbjct: 759 VSSEQRRYAKVINFGLIY--GMSAF-GLAGNLGIEREAAKHYI 798 >gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9] gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9] Length = 908 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR +A +G KL+ AD + +E R++A ++ ++ LKAF+ G D++ +T + F V ++ Sbjct: 669 VRQAFVAEDGFKLMSADYSQVELRLMAHISNDEGMLKAFKEGADIHRSTASEVFGVPLSE 728 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 V QR K + L Y GA A +A+ G++ T Sbjct: 729 VDDSQRRAAKAINFGLIYGMGAFA---LANNLGISRET 763 >gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT] gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT] Length = 910 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + +SDP+ LQ I +R IA G ++ AD + Sbjct: 632 PATGRVHTSYSQAVAITGRLASSDPN-LQNIPVRTAEGRRIREAFIAPPGASIISADYSQ 690 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF GED++ T A F V +V+ +QR KV+ L Y Sbjct: 691 IELRIMAHLSQDEGLLSAFAKGEDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIY-- 748 Query: 444 GAKAF 448 G AF Sbjct: 749 GMSAF 753 >gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK] gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK] Length = 922 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 10/159 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T +SDP+ LQ I Sbjct: 621 LEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNAEG 679 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA G K++ D + IE R++A ++G++ L+AF+ G+D++ T A + Sbjct: 680 RRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPI 739 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 VT +QR K + L Y G AF +A G+ N Sbjct: 740 ESVTTEQRRRAKAINFGLIY--GMSAF-GLAKQLGMGRN 775 >gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273] gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272] gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272] gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273] Length = 808 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/360 (20%), Positives = 136/360 (37%), Gaps = 96/360 (26%) Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR + QN+PRP D D +I R+ + G Sbjct: 518 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 552 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 K L D +G E R++AW +G++ ++ F TG D++ T + + A++ K +R K Sbjct: 553 KILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 612 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + Y G EHA Sbjct: 613 AGNFGISYGG----------------------------------------------TEHA 626 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551 ++ F + K R+ +++ N + A+++ E + I+ AR++ V +Y Sbjct: 627 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 679 Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +LP S RD G+ R NT + + K+ I +++ + Sbjct: 680 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 730 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667 EG++ A D++ +HDEI+ E D E ++ + +M P +P++AEG Sbjct: 731 -EGVLAHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 787 >gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 911 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR I + K + D + IE RVLA M+ E +KAF D+++ FN++ Q Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQDADIHLQAAKLIFNLSDDQ 720 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +T +QR I KV + Y G F +A+ +N+N ++K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLANDLNMNVNQAKQMIK 761 >gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 7/127 (5%) Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381 Q+ P R H Q I ++DP+ I + +R IA +G+ ++ AD Sbjct: 644 QSDPATQRVHTSYHQAIAATGRLSSTDPNLQNIPIRGEVGRQIRQAFIAPKGRIILAADY 703 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R++A + ++ LKAF G D++ T A +A VT DQR K + L Y Sbjct: 704 SQIELRLMAHFSQDEALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAINFGLLY 763 Query: 442 QGGAKAF 448 G AF Sbjct: 764 --GMSAF 768 >gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6] gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6] Length = 628 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384 P R H + QI + + P+ QI + +R + GK+ V ADL+ I Sbjct: 332 PLDGRVHPQYFQIPSSTGRISSRHPNAQQIPRRGDDAPAIRRLFRPAAGKRYVKADLSNI 391 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ +AF G DL+ T +R +VT QR K M L Y G Sbjct: 392 ELRIMARISGDEAMQEAFIKGIDLHRLTASRISGTPFEEVTDSQRQAAKAMNFLLIYGGS 451 Query: 445 AKAFQ 449 AK+ Q Sbjct: 452 AKSLQ 456 >gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4] gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4] Length = 930 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG+K++ AD + IE R++A ++ ++ L AF G+D++ T A F+V ++ Sbjct: 690 IRHAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSE 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 750 VTSEQRRRAKAVNFGLIY--GMSAF 772 >gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649] gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649] Length = 889 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + +G + L+ AD + IE R++A ++G++ ++AF TGEDL+ AR F V P Sbjct: 648 IREVFVVGKGYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPE 707 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 VT + R+ K M L Y G AF Sbjct: 708 DVTAEMRSKVKAMSYGLAY--GLSAF 731 >gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 932 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 653 PTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L+AF+ G+D++ T A ++ QVT +QR K + L Y Sbjct: 712 IELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876] gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876] Length = 808 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/360 (20%), Positives = 136/360 (37%), Gaps = 96/360 (26%) Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR + QN+PRP D D +I R+ + G Sbjct: 518 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 552 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 K L D +G E R++AW +G++ ++ F TG D++ T + + A++ K +R K Sbjct: 553 KILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 612 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + Y G EHA Sbjct: 613 AGNFGISYGG----------------------------------------------TEHA 626 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551 ++ F + K R+ +++ N + A+++ E + I+ AR++ V +Y Sbjct: 627 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 679 Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +LP S RD G+ R NT + + K+ I +++ + Sbjct: 680 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 730 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667 EG++ A D++ +HDEI+ E D E ++ + +M P +P++AEG Sbjct: 731 -EGVLAHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 787 >gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] Length = 930 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q+ T ++DP+ LQ I +R + EG L+ AD + Sbjct: 651 PVSGRVHTHYGQVQTATGRLSSNDPN-LQNIPVRSAQGREIRKAFVPREGWTLLAADYSQ 709 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA + ++ L AF G D++ T A+ F V V++DQR+ K++ + Y Sbjct: 710 IELRILAALTADEGLLTAFREGRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPY-- 767 Query: 444 GAKAF 448 G AF Sbjct: 768 GISAF 772 >gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] Length = 930 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR IA E +V AD + IE R++A ++G+ ++AF+ GED++ T A F + P Sbjct: 689 VRRAFIAPENSVIVSADYSQIELRIMAHLSGDATLIEAFKNGEDVHRRTAAEVFGMQPEN 748 Query: 424 VTKDQRAIGKVMELALGY 441 +T +QR K + L Y Sbjct: 749 ITPEQRRYAKTINFGLIY 766 >gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] Length = 920 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H + +Q IT +S+P+ I S +R + EG +LV AD + I Sbjct: 626 PNTGRVHTDFNQAITTTGRLSSSNPNLQNIPTRTAFSRQIRQAFLPKEGWQLVAADYSQI 685 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E +K + ED++ T F+ ++T ++R + KV+ + Y G Sbjct: 686 ELRILAHLSEEPILIKTYREDEDVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMG 745 Query: 445 AKAFQKMASTTGLNLNTF 462 A F + L+ TF Sbjct: 746 AARFAREMDIHRLDAKTF 763 >gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972] gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972] Length = 932 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 653 PTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L+AF+ G+D++ T A ++ QVT +QR K + L Y Sbjct: 712 IELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] Length = 920 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 9/122 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T +SDP+ LQ I VR +A +G K+V AD + IE Sbjct: 645 GRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRKVRQAFVARDGYKIVAADYSQIEL 703 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++ + LKAF G+D++ T A F + QV+ +QR K + L Y G Sbjct: 704 RIMAHLSQDNGLLKAFAEGKDIHQATAAEVFGLELEQVSTEQRRRAKAINFGLIY--GMS 761 Query: 447 AF 448 AF Sbjct: 762 AF 763 >gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 1047 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGKKL+ AD + IE R+LA +A +AFE G D++ T + F VA Q Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +T D R K + + Y G AF +A G+ E+A F + Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D +I T K++ R+K V+ L+ + Sbjct: 905 QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 Y + NN PS R+ V R +N + G + I + Sbjct: 940 ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658 A++R E + A K ++L VHDE+V E PD DE A++ + +M P+ A Sbjct: 974 AMTR---MEDALEAKKLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1026 >gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] Length = 1041 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA L+ AD + IE R+LA + E ++AF GED++ T A F+V + Sbjct: 795 IRRAFIADPSYVLLTADYSQIELRILANITNEPRLVEAFNQGEDIHTITAASLFSVPVEE 854 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 VT+DQR + K + A+ Y G A+ ++ TG+ A +K Sbjct: 855 VTRDQRRLAKTVVYAVLY--GQSAY-GLSQVTGMRPGDAADFIK 895 >gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] Length = 1047 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGKKL+ AD + IE R+LA +A +AFE G D++ T + F VA Q Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +T D R K + + Y G AF +A G+ E+A F + Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D +I T K++ R+K V+ L+ + Sbjct: 905 QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 Y + NN PS R+ V R +N + G + I + Sbjct: 940 ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658 A++R E + A K ++L VHDE+V E PD DE A++ + +M P+ A Sbjct: 974 AMTR---MEDALEAKKLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1026 >gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 933 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 98/418 (23%), Positives = 161/418 (38%), Gaps = 77/418 (18%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110 LK LEN ++ V N ++ ++L D + ++ V ++ N ALK Sbjct: 409 LKPLLENPEIKKVGQNLKYDMSILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALK 468 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +G K +E+ + K T + + + Y D +T Sbjct: 469 YLG-------HKNISFEEIAGKGAKQLTFNQI----------SLEVAAPYAAEDADITLR 511 Query: 171 IFKRLEPLSSKEQELWY--------LDQTIND---RGYCVDVALAHTLNQIVDVERTKLD 219 + + L P KE EL L Q ++D +G +D L ++ E + Sbjct: 512 LHQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSE----ELARTI 567 Query: 220 QELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272 ELE Y + S L ++L+ F + G + T +T + VL P Sbjct: 568 DELEQKAYEIAGESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 627 Query: 273 AIQVFNNRMRASRSAVL--KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + +R A + KL +V A GR+ + A+ TGR S QN+P Sbjct: 628 PKIILQHRSLAKLKSTYTDKLPLMVNAQT--GRVHTSYHQANAA-TGRLSSSEPNLQNIP 684 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R+ E +R IA EG+K++ AD + IE R++A Sbjct: 685 --IRTEE-----------------------GRRIRHAFIAREGRKVLAADYSQIELRIMA 719 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ ++ L AF G+D++ T A F+V +VT +QR K + L Y G AF Sbjct: 720 HLSQDKGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIY--GMSAF 775 >gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B] gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B] Length = 928 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 627 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEAG 685 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 686 RRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 745 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 V+ +QR K + L Y G AF Sbjct: 746 EDVSSEQRRRAKAVNFGLIY--GMSAF 770 >gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2] gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2] Length = 891 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 9/126 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q IT +SDP+ LQ I +R + G LV AD + Sbjct: 613 PETGRIHTSFNQAITATGRLSSSDPN-LQNIPIRTNEGKMIREAFVPEPGHILVAADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA A ++ +++F ED++ T A F P +T+D R K + + Y Sbjct: 672 IELRLLAHFAEDEILIQSFRNDEDIHTRTAAEVFQAFPEFITEDLRRQAKAINFGIMY-- 729 Query: 444 GAKAFQ 449 G AF+ Sbjct: 730 GMSAFK 735 >gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414] gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414] Length = 970 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 104/506 (20%), Positives = 191/506 (37%), Gaps = 119/506 (23%) Query: 158 GEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHT 206 G YC V T ++ ++L L EQ L + + G C++ A H Sbjct: 519 GYYCCLQVHATFQLVQKLREELEKFPALHKLLLEVEQPLEAVLAEMEYTGVCINSAYLHE 578 Query: 207 LNQIVDVERTKLDQELESL---TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 L+Q ++++ KL++ S+ T+ L S ++L LF + GL + Sbjct: 579 LSQQLEIDLAKLEETATSIAGETFNLGSP----KQLSVILFDKLGLSTK----------- 623 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 ++ +++ S + ++ ++ G + +++ S+ Sbjct: 624 -------------YSRKIKTGYSTDVATLEKLQEVDETGFVDAMMEYRTLSKLKSTYVDA 670 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV 378 P P R H +Q +T +S+P+ P++ S +R + G + Sbjct: 671 LPALVRPDTQRLHTNFNQTVTATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGYLMAA 730 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++ E L+A++ ED++ T F + +T D+R I K + Sbjct: 731 ADYSQIELRILAHLSQEPILLQAYQQNEDIHTVTARLVFE--KSDITSDERRIAKTINFG 788 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y G+ F + +TG++ + A F + E +P+ Sbjct: 789 VIYGMGSLRFSR---STGIDKSI----------------ANEFIKRFNERYPQ------- 822 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR-DVPLVYMKKDKNN 557 + E VKK + Q + +T I+ R+R D ++K KN+ Sbjct: 823 VFAYLEGVKK-------------QAISQGYVET------ILGRRRYVDFKNDSLRKLKNS 863 Query: 558 LI--LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + L ++L D G RS N +Q S DI+ M+ Sbjct: 864 KPEDIDLSKLKNLGPEDAGLLRSAANAP------------------IQGSSADIIKIAMI 905 Query: 616 NA----TKAGYDIVLTVHDEIVCETP 637 K ++L VHDE+V E P Sbjct: 906 RMHEVLQKYQARLLLQVHDELVFEVP 931 >gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1] gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1] Length = 1047 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGKKL+ AD + IE R+LA +A +AFE G D++ T + F VA Q Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +T D R K + + Y G AF +A G+ E+A F + Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D +I T K++ R+K V+ L+ + Sbjct: 905 QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 Y + NN PS R+ V R +N + G + I + Sbjct: 940 ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658 A++R E + A K ++L VHDE+V E PD DE A++ + +M P+ A Sbjct: 974 AMTR---MEDALEAKKLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1026 >gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586] gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586] Length = 938 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 659 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775 Query: 444 GAKAF 448 G AF Sbjct: 776 GMSAF 780 >gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603] gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603] Length = 938 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 659 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775 Query: 444 GAKAF 448 G AF Sbjct: 776 GMSAF 780 >gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] Length = 911 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T ++DP+ LQ I +R IA++G K+V AD + I Sbjct: 633 KTQRVHTSYHQAVTATGRLSSTDPN-LQNIPIRSEEGRRIREAFIAADGYKIVAADYSQI 691 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ L AF G D++ T A F V+ +VT D R K + L Y G Sbjct: 692 ELRIMAHLSQDKGLLSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNFGLIY--G 749 Query: 445 AKAF 448 AF Sbjct: 750 MSAF 753 >gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 942 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R I +EG KL+ AD + Sbjct: 664 PKTGRVHTNFSQATAVTGRLASSDPN-LQNIPVRTEEGRRIREAFIPAEGCKLLSADYSQ 722 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A +A ++ L AF G+D++ T A F V V+ +QR KV+ L Y Sbjct: 723 IELRIMAHIAEDENLLTAFRDGKDVHQATAAEIFGVPLDDVSSEQRRYAKVINFGLIY-- 780 Query: 444 GAKAFQKMASTTGL 457 G AF +A G+ Sbjct: 781 GMSAF-GLAGNLGI 793 >gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205] Length = 985 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 10/131 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ I S +R + G L+ AD + IE R Sbjct: 694 GRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEAGWTLISADYSQIELR 753 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++GE+ +KA+++G+D++ T F+ +VT D+R +GK + + Y G Sbjct: 754 ILAHLSGEEVLVKAYQSGDDVHALTARLLFD--KDEVTSDERRLGKTINFGVIYGMG--- 808 Query: 448 FQKMASTTGLN 458 Q+ A TG++ Sbjct: 809 VQRFARETGVS 819 >gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] Length = 875 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 26/160 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ +V+ + DG++ T Q ++TGR S QN+P R+ E Sbjct: 589 IDGMVDLIKEDGKIHTTFQ-QTIAQTGRISSTNPNLQNIP--IRTEE------------- 632 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + SEG L+ AD + IE RVLA +A ++ + AF+ G D++ Sbjct: 633 ----------GRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMIDAFKHGADIHR 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 T + F V +VT QR+ K + + Y G + K Sbjct: 683 KTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSLSK 722 >gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] Length = 937 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 76/308 (24%), Positives = 125/308 (40%), Gaps = 50/308 (16%) Query: 153 AWRLFGEYCKGDVTVTREIFKRL-EPLSSKEQE--LWYLD-------QTINDRGYCVDVA 202 A L +Y D V R ++ L E L ++QE W ++ + + G +DV Sbjct: 498 AEELLVDYAAEDADVVRRLYPLLREKLEQEQQEKLFWEVEMPLVGVLERMEREGVQLDVQ 557 Query: 203 LAHTLNQIVDVERTKLDQELESLTY---GLVSSSRCLEKLKTWLFLETGLHLEDL----- 254 H +++ + T +E E + G + +++ LF E GLH + Sbjct: 558 RLHEVSEKL----TNDLRETEDAIFHWAGHSFNVSSPKQVGVVLFEELGLHAKGKKTKTN 613 Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T +T + VLS P ++ + R L E + DGRLR + + Sbjct: 614 TYSTSEEVLSKCVDQHPIVQKILDYRGLKKLIGTYT-EALPELVYPDGRLRTSYN-QAVT 671 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S QN+P S +E +RS + + Sbjct: 672 VTGRLSSSDPNLQNIPIRSAMGQE-------------------------IRSAFVPRSSE 706 Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 + AD + IE R++A + ++ +KAF GED++ +T AR +NVAP +VT QR+ K Sbjct: 707 FTFLSADYSQIELRLMAHFSQDEHLIKAFVEGEDVHRSTAARIYNVAPEEVTPLQRSHAK 766 Query: 434 VMELALGY 441 + Y Sbjct: 767 TANFGIIY 774 >gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik] gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik] Length = 600 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 112/473 (23%), Positives = 184/473 (38%), Gaps = 85/473 (17%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV--TIVAH 71 +D G+ Y+ L FG D E W D Q+ +E E D IV Sbjct: 40 VDTETTGLDIYSSTFRCRLVQFGTQD---EAWVLPVDESPTQLQQETREALDKLGKIVMQ 96 Query: 72 NSYFERTVLKACFNLDIPIHRW---ICTLVLAR-SNGLPSALKAVGEALK------LSSQ 121 N+ ++ VL CF + + W + T +LA+ + P G +L+ +S Sbjct: 97 NASYDLQVLDHCFGIKME-DLWPKVLDTQILAKLVDPRPYGAGGFGHSLEELIAEFISKD 155 Query: 122 KMEEGKELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---FKRLE 176 + ++ K L+A+ K T ++ H E + Y D T I RL Sbjct: 156 QAKDVKGLMAKLAKEHKTTKAKIWSTIDLFHPE----YLTYAGMDTIFTARICRKLTRLV 211 Query: 177 PLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL-- 229 P S+ E ++ + I+ +G+ +DV A L+ E++ + L + YGL Sbjct: 212 PDVSRGLVPYEHKISEICSYIDRKGFQLDVEYAQELSDRWLYEKSVWEAILFT-EYGLDN 270 Query: 230 -VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-----NKKLTPQAIQVFNNRMRA 283 S+ +C + ++ E G ++ T+T ++V + KK TP+ + A Sbjct: 271 PNSNEQCADVIE-----EAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAALAAMIQEA 325 Query: 284 SRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + + +E +SD R + L A RT R S P Q LP + Sbjct: 326 QKLGKWRNTWVQKFLEVKDSDDRCHTFVNPLQA-RTSRMSITGIPAQTLPAGDWT----- 379 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR C +A G + D E RVLA ++G++ ++ Sbjct: 380 -----------------------VRRCFLAEPGHVMSSIDYQTQELRVLAALSGDKTMIE 416 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 AF+TG DL+ T A + R IGK+ Y GGAK + A+ Sbjct: 417 AFKTGADLHQMT---------ADAAQVPRKIGKMANFLTVYGGGAKTLAEQAN 460 >gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80] gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80] Length = 525 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 246 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 304 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 305 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 362 Query: 444 GAKAF 448 G AF Sbjct: 363 GMSAF 367 >gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 149/356 (41%), Gaps = 56/356 (15%) Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSS 180 +MEE ELI R K + DR E R+ +Y DV T + + L P L + Sbjct: 443 EMEEITELIGRGKK----QLTMDRA-----EIARV-TQYACADVEATYRLVEVLRPQLEA 492 Query: 181 KEQ-------ELWYLDQTIN--DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 Q EL +D I+ G +DV L+ ++D + L++ + L G Sbjct: 493 HNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA-GHPF 551 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L T LF E GL T+T Q VL + + P + R + Sbjct: 552 NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ------L 605 Query: 289 LKL-NTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 LKL +T V+A+ GR+ T+ + TGR S QN+P + EL Sbjct: 606 LKLKSTYVDALPRQVHPQTGRVH-TIFHQTVAATGRLSSSDPNLQNIP----ARGELGLA 660 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + I+D IA E L+ D + IE R++A + + L+AF Sbjct: 661 VRR------------AFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAF 708 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 G+D++ T + F V VT + R I KV+ + Y G +A+ +A TG++ Sbjct: 709 AEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMY--GMQAY-GLARDTGMS 761 >gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] Length = 916 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q IT ++DP+ LQ I +R +A++G K+ AD + IE R Sbjct: 641 RVHTSYHQAITATGRLSSTDPN-LQNIPIRTEEGRKIRQAFVAAKGYKIAAADYSQIELR 699 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++ ++ L AF G D++ T A F V+ A+VT D R K + L Y G A Sbjct: 700 IMAHLSQDKGLLNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIY--GMSA 757 Query: 448 F 448 F Sbjct: 758 F 758 >gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] Length = 896 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P + P+ R H +Q + +SDP+ LQ I +R+ IA EG ++ Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ + L+AF G D++ T + F V+K+QR K + Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF 729 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 L Y G AF +A G+ H + T Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757 >gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] Length = 917 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 149/356 (41%), Gaps = 56/356 (15%) Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSS 180 +MEE ELI R K + DR E R+ +Y DV T + + L P L + Sbjct: 443 EMEEITELIGRGKK----QLTMDRA-----EIARV-TQYACADVEATYRLVEVLRPQLEA 492 Query: 181 KEQ-------ELWYLDQTIN--DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 Q EL +D I+ G +DV L+ ++D + L++ + L G Sbjct: 493 HNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA-GHPF 551 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L T LF E GL T+T Q VL + + P + R + Sbjct: 552 NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ------L 605 Query: 289 LKL-NTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 LKL +T V+A+ GR+ T+ + TGR S QN+P + EL Sbjct: 606 LKLKSTYVDALPRQVHPQTGRVH-TIFHQTVAATGRLSSSDPNLQNIP----ARGELGLA 660 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + I+D IA E L+ D + IE R++A + + L+AF Sbjct: 661 VRR------------AFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAF 708 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 G+D++ T + F V VT + R I KV+ + Y G +A+ +A TG++ Sbjct: 709 AEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMY--GMQAY-GLARDTGMS 761 >gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573] gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573] Length = 938 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 659 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775 Query: 444 GAKAF 448 G AF Sbjct: 776 GMSAF 780 >gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223] gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223] Length = 890 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 611 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 669 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 670 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 727 Query: 444 GAKAF 448 G AF Sbjct: 728 GMSAF 732 >gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52] gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52] Length = 317 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 38 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 96 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 97 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 154 Query: 444 GAKAF 448 G AF Sbjct: 155 GMSAF 159 >gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451] gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451] Length = 938 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 659 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775 Query: 444 GAKAF 448 G AF Sbjct: 776 GMSAF 780 >gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter calcoaceticus PHEA-2] Length = 923 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + ++ + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 149/356 (41%), Gaps = 56/356 (15%) Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSS 180 +MEE ELI R K + DR E R+ +Y DV T + + L P L + Sbjct: 443 EMEEITELIGRGKK----QLTMDRA-----EIARV-TQYACADVEATYRLVEVLRPQLEA 492 Query: 181 KEQ-------ELWYLDQTIN--DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 Q EL +D I+ G +DV L+ ++D + L++ + L G Sbjct: 493 HNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA-GHPL 551 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L T LF E GL T+T Q VL + + P + R + Sbjct: 552 NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ------L 605 Query: 289 LKL-NTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 LKL +T V+A+ GR+ T+ + TGR S QN+P + EL Sbjct: 606 LKLKSTYVDALPRQVHPQTGRVH-TIFHQTVAATGRLSSSDPNLQNIP----ARGELGLA 660 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + I+D IA E L+ D + IE R++A + + L+AF Sbjct: 661 VRR------------AFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAF 708 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 G+D++ T + F V VT + R I KV+ + Y G +A+ +A TG++ Sbjct: 709 AEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMY--GMQAY-GLARDTGMS 761 >gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3] gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3] Length = 948 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/305 (23%), Positives = 136/305 (44%), Gaps = 28/305 (9%) Query: 155 RLFGEYCKGDVTVTREIF----KRLEP-----LSSKEQELWYLDQTINDRGYCVDV-ALA 204 +L +Y D VT ++ K+L P L+ E L Y+ + RG +D+ AL Sbjct: 491 KLLCDYASEDAYVTLRLYQALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQ 550 Query: 205 HTLNQIVDVERTKLDQELESLTY-GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 + ++++ +L++E++S + GL +++ LF E + +E +T + Sbjct: 551 RSRQELLE-SVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELQI-MEKPRKTKTGSYV 608 Query: 264 SSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMN----SDGRLRGTLQFLGASRTGR 318 ++ + L P +++ + R A LNT ++ + DG+L + + TGR Sbjct: 609 TNEETLLPLRSLHPVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAVTATGR 667 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC--VRSCVIASEGKKL 376 S QN+P S L + + +DP +S C V G L Sbjct: 668 LSSSNPNLQNIPIRSDLGRPLRR-------AFVADPYYTPRLSACAPVDHTHEKPIGAVL 720 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + +E RV+A ++ + + +F +G+D++ T A+ F VAP +VT R+ K Sbjct: 721 LSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTAN 780 Query: 437 LALGY 441 + Y Sbjct: 781 FGINY 785 >gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] Length = 877 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 26/148 (17%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L A++ DGR+R T + AS TGR S QNLP I +D Sbjct: 594 LENAIDEDGRIRSTFRQNIAS-TGRLSSQEPNLQNLP-------------------IKTD 633 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R A EGK L+ AD + IE R+LA +A ++ AF G D++ T Sbjct: 634 E------GRAIRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFNRGIDIHTQTA 687 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441 + F+ +VTK QR+ K + + Y Sbjct: 688 SEVFHTPLDEVTKLQRSEAKAVNFGIIY 715 >gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby] gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby] Length = 896 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P + P+ R H +Q + +SDP+ LQ I +R+ IA EG ++ Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ + L+AF G D++ T + F V+K+QR K + Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF 729 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 L Y G AF +A G+ H + T Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757 >gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris] gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris] Length = 896 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P + P+ R H +Q + +SDP+ LQ I +R+ IA EG ++ Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ + L+AF G D++ T + F V+K+QR K + Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF 729 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 L Y G AF +A G+ H + T Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757 >gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489] gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489] Length = 946 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ V E L+ AD + IE R++A ++ E ++AF+ GED++ +T ++ FNV QV Sbjct: 708 KAFVPRDENYTLLAADYSQIELRIIAALSDETTMIEAFKNGEDIHASTASKVFNVPLDQV 767 Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448 T++QR+ K + + Y G AF Sbjct: 768 TREQRSNAKTVNFGIIY--GVSAF 789 >gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3] Length = 857 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 31/181 (17%) Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A KLN+ L++ + DGR+ T A RTGR S QN+P Sbjct: 562 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIP----------- 609 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 I T L + + R+ +A G LV AD + IE R+LA + G++ +A Sbjct: 610 IRTELGSQL--------------RAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQQA 655 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F GED++ +T A+ + + ++VT R+ K + + Y GA + K T + Sbjct: 656 FLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYSLSKDIGVTVKEADA 715 Query: 462 F 462 F Sbjct: 716 F 716 >gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80] gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80] Length = 906 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 627 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743 Query: 444 GAKAF 448 G AF Sbjct: 744 GMSAF 748 >gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25] gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25] gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25] gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25] Length = 928 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 627 LEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEAG 685 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A + Sbjct: 686 RRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGLDI 745 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 746 EQVSSEQRRRAKAVNFGLIY--GMSAF 770 >gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703] Length = 612 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA EG +++ AD + Sbjct: 333 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQ 391 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F ++ +VT +QR K + L Y Sbjct: 392 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIY-- 449 Query: 444 GAKAF 448 G AF Sbjct: 450 GMSAF 454 >gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes HL025PA1] Length = 112 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 11/109 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET SP L K G+ YAE D +++F + D PVE+ D +P + Sbjct: 1 MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLV 98 AL + V AHN+ FER L A P +W CT+V Sbjct: 61 AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMV 109 >gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4] gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4] Length = 808 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 75/360 (20%), Positives = 136/360 (37%), Gaps = 96/360 (26%) Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR + QN+PRP D D +I R+ + G Sbjct: 518 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 552 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 K L D +G E R++AW +G++ + F TG D++ T + + A++ K +R K Sbjct: 553 KILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 612 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + Y G EHA Sbjct: 613 AGNFGISYGG----------------------------------------------TEHA 626 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551 ++ F + K R+ +++ N + A+++ E + I+ AR++ V +Y Sbjct: 627 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 679 Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +LP S RD G+ R NT + + K+ I +++ + Sbjct: 680 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 730 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667 EG+++ A D++ +HDEI+ E D E ++ + +M P +P++AEG Sbjct: 731 -EGVLSHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 787 >gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2] Length = 892 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946] gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946] Length = 846 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/329 (23%), Positives = 127/329 (38%), Gaps = 64/329 (19%) Query: 142 LYDRNKPNHREAWRLFGEYCKGD-----VTVTREIFKRLEPLSSKEQ---ELWYLDQTIN 193 LYD P + E Y GD V+ + + E LS++ Q LW+L + + Sbjct: 393 LYD---PANSEPASTVRRYGAGDLVADPVSHAQAAWLLWETLSARTQGDERLWWLYREVE 449 Query: 194 D-----------RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 RG +DV L++ + E L+ E+ L G + ++L+ Sbjct: 450 KPLAAVLAQMECRGVALDVPYLQELSEELGKELGYLEAEIHRLA-GHPFNVNSRDQLEAI 508 Query: 243 LFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L+ E GL TT +R VL + L P ++ + R A Sbjct: 509 LYDELGLQAGGKKTTTGKRSTAASVLEEMRSLHPIVGKILDYRELA-------------- 554 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 +L+GT +L P P+ R H +Q + +SDP+ Sbjct: 555 -----KLKGT--YLDP----------LPKLIHPKTGRLHTRFNQTVAATGRLSSSDPNLQ 597 Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I + +R +A +G LVVAD + IE R+LA ++G++ K F D++ T Sbjct: 598 NIPVRTEVGRKIRKAFVAEKGYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQT 657 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 A F + P +V R K + + Y Sbjct: 658 AAWMFGLEPEKVDPQHRRAAKTINFGVLY 686 >gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51] gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51] Length = 930 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 651 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 709 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 710 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 767 Query: 444 GAKAF 448 G AF Sbjct: 768 GMSAF 772 >gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 911 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR I + K + D + IE RVLA M+ E + AF D+++ FN++ Q Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +T +QR I KV + Y G F +AS +N+N ++K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNMNVNQAKQMIK 761 >gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15] gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15] Length = 892 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 9/169 (5%) Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V +L L EA + L LQ+ G ++ P P R H +Q +T+ Sbjct: 574 VEELERLAEAGHEIAAL--ILQYRGLAKLKSTYTDALPKLVQPATGRVHTSYNQTVTNTG 631 Query: 348 TSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ LQ I +R IA EG L+ AD + IE RVLA + ++ A Sbjct: 632 RLSSSEPN-LQNIPVRTEEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVFCDA 690 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 F ED++ T A F + P VT + R K + + Y GA + K Sbjct: 691 FAKDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAK 739 >gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33] gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9] gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236] gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9] gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33] gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236] Length = 906 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 627 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743 Query: 444 GAKAF 448 G AF Sbjct: 744 GMSAF 748 >gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395] gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27] gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395] gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395] gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27] Length = 934 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644] gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644] Length = 1040 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 83/327 (25%), Positives = 130/327 (39%), Gaps = 40/327 (12%) Query: 163 GDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 G V R + LE L + E+ L + + + G +D A L++ T L+++ Sbjct: 617 GQVLAQRVAAEGLERLYDTLERPLIEILADMEEAGVALDRARLRQLSRDFSARLTDLERQ 676 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L G + +L+ LF GL T +T Q VL L Q +V Sbjct: 677 AHQLA-GEPFNLSSPPQLRVILFERLGLPPRGKTPKGEASTAQEVLEELAALH-QLPKVL 734 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + L+ L + DGR+R T G + TGR S QN+P R+ E Sbjct: 735 LEHRRIEKLKNTYLDALPNLTHPDGRIRATFN-QGVTATGRLSSSEPNLQNIP--VRTEE 791 Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGE 395 VR +A + + L+ AD + IE RVLA + + Sbjct: 792 -----------------------GRQVRQAFVAGDPARQVLLTADYSQIELRVLAHFSRD 828 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AFE D++ A+ F VA VT DQR + K + + Y A +AS Sbjct: 829 PALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNFGVIYGLSAHG---LASRL 885 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFC 482 G++ + A + N+ +++ E F Sbjct: 886 GISQSEAAAFI--NAYFDQYPHVEAFM 910 >gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] Length = 949 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG K+V AD + IE R++A ++ ++ L AF G+D++ T + F + + Sbjct: 709 IRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLEE 768 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 769 VTSEQRRSAKAINFGLIY--GMSAF 791 >gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385] gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385] Length = 934 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 655 PNTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)] gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)] Length = 906 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 627 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743 Query: 444 GAKAF 448 G AF Sbjct: 744 GMSAF 748 >gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891] gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891] Length = 931 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA G K++ D + IE R++A ++G++ L+AF+ G+D++ T A Sbjct: 689 RRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIMGTTI 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 749 DQVSSEQRRRAKAVNFGLIY--GMSAF 773 >gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] Length = 906 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 627 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743 Query: 444 GAKAF 448 G AF Sbjct: 744 GMSAF 748 >gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] Length = 910 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 669 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 728 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 729 DVSVAQRSKIKAMNYGLAY 747 >gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] Length = 891 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 7/127 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q +T +SDP+ LQ I +R + G+ L+ AD + Sbjct: 613 PDSGRIHTSFNQAVTATGRLSSSDPN-LQNIPIRSEEGRAIREAFVPDAGQVLLAADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RV+A MA E ++F GED++ T + F+V P V + R K + + Y Sbjct: 672 IELRVMAHMADEPILQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAKTINFGVLYGM 731 Query: 444 GAKAFQK 450 GA + K Sbjct: 732 GAFSLAK 738 >gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4] Length = 934 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3] gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4] Length = 892 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] Length = 928 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R +A G ++V AD + IE R Sbjct: 654 RLHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELR 712 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++A ++G++ L AF G D++ T A F VA V+ +QR K + L Y Sbjct: 713 IMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIY 766 >gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1] gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2] gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1] gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1] Length = 892 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10] gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10] Length = 934 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 985 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/317 (23%), Positives = 131/317 (41%), Gaps = 80/317 (25%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ I S +R + E KL+ AD + IE R Sbjct: 694 GRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLISADYSQIELR 753 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++GE+ +A++ G+D++ T + + ++R +GK + + Y GA Sbjct: 754 ILAHLSGEEILQEAYKNGDDVH--TLTAKILLEKESINSNERRLGKTINFGVIYGMGA-- 809 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 Q+ A +TGLN +A++F +E +P+ +F Sbjct: 810 -QRFARSTGLN----------------QSEAKDFLNRFKERYPK-----VF--------- 838 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 ++ + R++ L + + QT ++ R+R Y DKN L +L S Sbjct: 839 -SFLELQERLA-----LSKGYVQT------LLGRRR------YFNFDKNGLGRLLGS--- 877 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMN-ATK---- 619 +N ++ R +L +Q S DI+ M+ ATK Sbjct: 878 ----------DPMNIDLKRARRAGMEAQQLRAAANAPIQGSSADIIKIAMVQLATKLKVS 927 Query: 620 -AGYDIVLTVHDEIVCE 635 +++L VHDE+V E Sbjct: 928 GVAANLLLQVHDELVLE 944 >gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33] gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757] gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33] gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757] Length = 934 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens] gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens] Length = 896 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P + P+ R H +Q + +SDP+ LQ I +R+ IA EG ++ Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ + L+AF G D++ T + F V+K+QR K + Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF 729 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 L Y G AF +A G+ H + T Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757 >gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] Length = 956 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 42/219 (19%) Query: 291 LNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPT 348 ++ L E + DGR+ +Q + A TGR S QN+P R R + Sbjct: 669 VDALPEQVEEDGRVHTDYMQTVAA--TGRLSSNNPNLQNIPIRTERGRQ----------- 715 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 ++ V +E L+ AD + IE R++A ++ E ++AF+ GED+ Sbjct: 716 --------------VRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEAFKNGEDI 761 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T A+ FNV +VT++QR+ K + + Y G AF +++ T L + L+ T Sbjct: 762 HASTAAKVFNVPINEVTREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLTRSESKDLIDT 818 Query: 469 --NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + P+ R N + A ED ++ T R Sbjct: 819 YYKTYPK--------LRNYMSNLVDDAREDGYVSTVLGR 849 >gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] Length = 890 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 611 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 669 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 670 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 727 Query: 444 GAKAF 448 G AF Sbjct: 728 GMSAF 732 >gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] Length = 857 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 31/181 (17%) Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A KLN+ L++ + DGR+ T A RTGR S QN+P Sbjct: 562 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIP----------- 609 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 I T L + + R+ +A G LV AD + IE R+LA + G++ +A Sbjct: 610 IRTELGSQL--------------RAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQQA 655 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F GED++ +T A+ + + ++VT R+ K + + Y GA + K T + Sbjct: 656 FLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYSLSKDIGVTVKEADA 715 Query: 462 F 462 F Sbjct: 716 F 716 >gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341] gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341] Length = 938 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 659 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 717 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 718 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIY-- 775 Query: 444 GAKAF 448 G AF Sbjct: 776 GMSAF 780 >gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21] gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21] Length = 906 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 627 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 685 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 686 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 743 Query: 444 GAKAF 448 G AF Sbjct: 744 GMSAF 748 >gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39] gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39] Length = 934 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 655 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 714 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] Length = 916 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 8/129 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380 P + SR H +QI T +S+P+ P++ +R +A EGK L+ D Sbjct: 633 PNLVDSNSRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSID 692 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELAL 439 + +E RVL M+ ++ ++A+ +DL+ T R FN++ + VT++QR I K++ ++ Sbjct: 693 YSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSI 752 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 753 IY--GKTAF 759 >gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00] gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia intracellularis PHE/MN1-00] Length = 868 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 8/140 (5%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380 P+ + + R H +Q+ T +S+P+ I + +RSC AS+G L+ AD Sbjct: 582 PRLIGKDGRVHTTFNQLATATGRLSSSNPNLQNIPIRGSLGQRMRSCFTASQGNLLISAD 641 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + +E RVLA + + L AF G D++ T + + + +VT D+R K + L Sbjct: 642 YSQVELRVLAHYSKDPTLLTAFLEGADIHTRTASLLYEKSQEEVTADERRNAKTINFGLI 701 Query: 441 YQGGAKAFQKMASTTGLNLN 460 Y G QK+A LN Sbjct: 702 YGMGP---QKLAQELNTTLN 718 >gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51] gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51] Length = 802 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 75/360 (20%), Positives = 136/360 (37%), Gaps = 96/360 (26%) Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR + QN+PRP D D +I R+ + G Sbjct: 512 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 546 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 K L D +G E R++AW +G++ + F TG D++ T + + A++ K +R K Sbjct: 547 KILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAK 606 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + Y G EHA Sbjct: 607 AGNFGISYGG----------------------------------------------TEHA 620 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551 ++ F + K R+ +++ N + A+++ E + I+ AR++ V +Y Sbjct: 621 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 673 Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +LP S RD G+ R NT + + K+ I +++ + Sbjct: 674 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 724 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM---LYHLMTSNPSWAKGLPLKAEG 667 EG+++ A D++ +HDEI+ E D E ++ + +M P +P++AEG Sbjct: 725 -EGVLSHGSA--DMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEG 781 >gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266] Length = 931 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 690 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 749 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 750 DVSVAQRSKIKAMNYGLAY 768 >gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 896 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 10/151 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P + P+ R H +Q + +SDP+ LQ I +R+ IA EG ++ Sbjct: 611 LPKRINPKTHRVHTSYNQAVAATGRLSSSDPN-LQNIPIRSEEGRLIRTAFIAPEGSLIM 669 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ + L+AF G D++ T + F V+K+QR K + Sbjct: 670 AADYSQIELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF 729 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 L Y G AF +A G+ H + T Sbjct: 730 GLIY--GMSAF-GLAKQIGVERQDAQHYIDT 757 >gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31] gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31] Length = 916 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 8/129 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380 P + SR H +QI T +S+P+ P++ +R +A EGK L+ D Sbjct: 633 PNLVDSNSRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSID 692 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELAL 439 + +E RVL M+ ++ ++A+ +DL+ T R FN++ + VT++QR I K++ ++ Sbjct: 693 YSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSI 752 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 753 IY--GKTAF 759 >gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q IT ++DP+ I + +R IA +G+ ++ AD + IE R+ Sbjct: 651 RVHTSYHQAITATGRLSSTDPNLQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A + ++ LKAF G D++ T A +A VT DQR K + L Y G AF Sbjct: 711 MAHFSQDEALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAINFGLLY--GMSAF 768 >gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202] gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202] Length = 931 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 690 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 749 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 750 DVSVAQRSKIKAMNYGLAY 768 >gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] Length = 949 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 10/130 (7%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVV 378 P+ + + R H + Q + +++P+ LQ I ++ V E L+ Sbjct: 666 PEQVAQDGRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTERGRQVRKAFVPRDENHTLLA 724 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ E+ ++AF GED++ +T A+ FNV +VT++QR+ K + Sbjct: 725 ADYSQIELRIIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFG 784 Query: 439 LGYQGGAKAF 448 + Y G AF Sbjct: 785 IIY--GVSAF 792 >gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] Length = 915 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 674 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 733 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 734 DVSVAQRSKIKAMNYGLAY 752 >gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] Length = 931 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 630 LEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNDEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA G K++ D + IE R++A ++G++ L AF+ G+D++ T A Sbjct: 689 RRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIMGTTI 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 749 DQVSSEQRRRAKAVNFGLIY--GMSAF 773 >gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] Length = 984 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 10/141 (7%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P LP R H Q + +++P+ LQ I VR A EG+ +V Sbjct: 699 LPEMILPATGRVHTNYAQAVAITGRLASNNPN-LQNIPIRTEQGRRVRRAFCAPEGQMMV 757 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G+ AF+ ED++ T A F V P +T +QR K + Sbjct: 758 SADYSQIELRIMAHLSGDPTLQAAFQNNEDVHRRTAAEVFGVPPEHITAEQRRYAKTINF 817 Query: 438 ALGYQGGAKAFQKMASTTGLN 458 L Y G +F +A G++ Sbjct: 818 GLIY--GMSSF-GLAKALGID 835 >gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457] gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457] Length = 851 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 572 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 631 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 688 Query: 444 GAKAF 448 G AF Sbjct: 689 GMSAF 693 >gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587] gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2] gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587] gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2] Length = 886 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 607 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 665 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V QV+ +QR K + L Y Sbjct: 666 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIY-- 723 Query: 444 GAKAF 448 G AF Sbjct: 724 GMSAF 728 >gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR] gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR] Length = 921 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 LQ G S+ P P R H Q +T ++DP+ LQ I Sbjct: 619 LQHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQQAVTATGRLSSTDPN-LQNIPIRTAEG 677 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 VR I +G K+V D + IE R++A ++ ++ LKAF G D++ T A F Sbjct: 678 RRVRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESLLKAFAEGLDIHRATAAEVFGCKA 737 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 +V+ DQR K + L Y G AF Sbjct: 738 DEVSNDQRRQAKAVNFGLIY--GMSAF 762 >gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] Length = 949 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 10/130 (7%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVV 378 P+ + + R H + Q + +++P+ LQ I ++ V E L+ Sbjct: 666 PEQVAQDGRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTERGRQVRKAFVPRDENHTLLA 724 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ E+ ++AF GED++ +T A+ FNV +VT++QR+ K + Sbjct: 725 ADYSQIELRIIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFG 784 Query: 439 LGYQGGAKAF 448 + Y G AF Sbjct: 785 IIY--GVSAF 792 >gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6] Length = 576 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%) Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +Q I +R A EGK LV++D + IE R+ + G++ +KAF G+DL+ T + Sbjct: 332 VQNIPRDLRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGKDLHRYTASVL 391 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 ++K++R + K + L Y A+ A + G++L+ Sbjct: 392 LGKKEEDISKEERQLAKAVNFGLIYGISARGLSDYAKSYGIDLSV 436 >gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] Length = 910 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 669 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 728 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 729 DVSVAQRSKIKAMNYGLAY 747 >gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 932 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA EG +++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F ++ +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] Length = 1040 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 133/308 (43%), Gaps = 48/308 (15%) Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV--DVERTKLDQELESLTYGL 229 ++R+ L E L L + + D G VD L +Q + +V+RT+ E++ + Sbjct: 631 YRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTE-TAAFEAIGREV 689 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTP----QAIQVFNNRMR 282 SS ++L+ LF + GL T+T T + L P QA+ F +R Sbjct: 690 NLSSP--KQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDR-- 745 Query: 283 ASRSAVLKL-NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340 S +L++ L + + DGR+ T A+ TGR S QN+P R + Sbjct: 746 ---SKLLQIVRNLGDRIAPDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDGARIRE 801 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 I +P +S L+ AD + IE R++A ++G++ + Sbjct: 802 TFIAQMP-----------FVS--------------LMTADYSQIEMRIMAHLSGDEGLIA 836 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++GEDL+ + A F VAP VT QR K L Y G AF +A ++ Sbjct: 837 AFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAY--GLSAF-GLAGQLRISQG 893 Query: 461 TFAHLVKT 468 HL++T Sbjct: 894 EAKHLMET 901 >gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 31/169 (18%) Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A KLN+ L++ + DGR+ T A RTGR S QN+P Sbjct: 569 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIP----------- 616 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 I T L + + R+ IA G LV AD + IE R+LA + G++ +A Sbjct: 617 IRTELGSQL--------------RAYFIAKPGCVLVDADYSQIELRILAHITGDEHMQQA 662 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 F GED++ +T A+ + + +VT R+ K + + Y GA + K Sbjct: 663 FLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINFGIMYGKGAYSLAK 711 >gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1] Length = 892 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12] gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12] Length = 595 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 112/478 (23%), Positives = 181/478 (37%), Gaps = 102/478 (21%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69 +D G+ Y++ L FG PVEL + P+ + EAL D +V Sbjct: 40 VDTETTGLDIYSDTFRCRLVQFGTQSEAWVLPVELGGGI-----PENVIEALYEVD-KLV 93 Query: 70 AHNSYFERTVLK--ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 N+ ++ VL ++ + + T +LA+ P +A G L + Sbjct: 94 MQNASYDLQVLDQIGYAAMEDLWPKVLDTQILAKLVD-PRPFEAGGFGHSL--------E 144 Query: 128 ELIARFCKGETHEC-------LYDRNKPNHREAWRL-------FGEYCKGDVTVTREIFK 173 ELIA F E E L +K + W + Y D T I Sbjct: 145 ELIAEFIDKEQAENVKGLMTKLAKEHKTTKAKIWSTIDLFHPEYLTYAGMDTIFTARICS 204 Query: 174 RLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L PL E +L + I+ +G+ +DV A L+ E++ D + Sbjct: 205 KLAPLVPDVSRSLVPYEHKLSEICSYIDRKGFLLDVEYAQALSDKWLYEKSVWDA-IAFT 263 Query: 226 TYGLV---SSSRCLEKLKTWLFLETGLHLEDLTETTCQRV-------LSSNKKLTPQAIQ 275 YGL S+ +C + L+ E G+ ++ TE+ ++V LS + IQ Sbjct: 264 EYGLENVNSTDQCADALE-----EMGVKIKGRTESGKRQVNDDLLQSLSDDGNELAAIIQ 318 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +++ V K ++ ++ + LQ +RT R S P Q LP Sbjct: 319 EAKKLGKWNKTWVAKFLSVRDSEDRCHTFVNPLQ----ARTSRMSITGIPAQTLP----- 369 Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 SD VR C +A G+ + D E RVLA ++G Sbjct: 370 ------------------------ASDWIVRRCFVADPGQVMASVDYQTQELRVLAALSG 405 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +Q ++AF+TG DL+ T A ++ R +GK+ Y GGAK + A Sbjct: 406 DQTMIEAFKTGADLHQMT---------ADASQVVRKVGKMANFLTVYGGGAKTLAEQA 454 >gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] Length = 890 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 649 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 708 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 709 DVSVAQRSKIKAMNYGLAY 727 >gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1] gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2] gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1] gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1] gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2] gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1] gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1] Length = 892 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1] gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1] gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2] gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1] gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2] gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1] gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2] gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1] gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1] gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1] gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4] gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1] gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3] gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3] gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1] gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1] gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1] gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2] gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1] gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1] gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2] gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1] gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2] gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3] gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2] gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3] gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1] gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1] gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1] gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2] gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3] gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2] gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2] gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1] gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3] gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2] gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1] gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1] gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2] gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1] Length = 892 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO] gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO] Length = 892 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 11/145 (7%) Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGK-K 375 V P P R H Q T +SDP+ LQ + S +R V+ K Sbjct: 609 VLPKLVHPETGRIHSSFHQTGTATGRLSSSDPN-LQNLPSKQEESREIRKAVVPQRDSWK 667 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 ++ AD + IE RVLA ++ +Q ++AF+ ED++ T +R F V QVT R+IGK++ Sbjct: 668 ILSADYSQIELRVLAHLSNDQNLIEAFKKDEDIHNFTSSRIFQVPENQVTPQMRSIGKMV 727 Query: 436 ELALGYQGGAKAFQKMASTTGLNLN 460 ++ Y G + ++ TGL+ + Sbjct: 728 NFSVIY--GVSPY-GLSQRTGLSYD 749 >gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] Length = 910 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VRS +A +G K++ AD + IE R+L++ A + F GED++ +T A+ F + Q Sbjct: 667 VRSAFVAPQGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQ 726 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT++ R K + + Y G AF Sbjct: 727 VTEEHRRKAKAINFGVIY--GISAF 749 >gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] Length = 930 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R I EG +V AD + IE R Sbjct: 657 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRRIRQAFIPREGFTMVAADYSQIELR 715 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++ +Q + AF G+D++ +T A F + QVT +QR K + L Y G + Sbjct: 716 IMAHLSKDQGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIY--GMSS 773 Query: 448 F 448 F Sbjct: 774 F 774 >gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117] gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117] Length = 870 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 27/152 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L++A + DGR+ T A+ TGR S QN+P RS E Sbjct: 582 VDGLLKATHEDGRIHTTYAQTVAA-TGRLSSLNPNLQNIP--VRSEE------------- 625 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + EG + L+ D + IE R++A ++ ++ ++A++ GEDL+ Sbjct: 626 ----------GRRIRDVFMVGEGYQSLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLH 675 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R FNV P +VT + R+ K M L Y Sbjct: 676 RYVGSRVFNVEPEEVTSEMRSKVKAMSYGLAY 707 >gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 932 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA EG +++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F ++ +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11] Length = 932 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA EG +++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F ++ +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1] Length = 892 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2] gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2] Length = 892 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1] Length = 892 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 894 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +RS + EG + L+ AD + IE R++A ++G+ ++AF GEDL+ +R F V PA Sbjct: 653 IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIFGVEPA 712 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 V+ + R K M L Y G AF Sbjct: 713 DVSAEMRTKVKAMSYGLAY--GLSAF 736 >gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9] gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9] Length = 937 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T +SDP+ LQ I Sbjct: 636 LEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNAEG 694 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA G K++ D + IE R++A ++G++ L+AF+ G+D++ T A + Sbjct: 695 RRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPI 754 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 755 ESVTTEQRRRAKAINFGLIY--GMSAF 779 >gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] Length = 897 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTTILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ TKL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA + Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LK F D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli] gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli] Length = 898 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 107/259 (41%), Gaps = 51/259 (19%) Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L+T LF + GL + + T +T + VL + P + +R R S+ + Sbjct: 554 KQLQTILFDDHGLPILEKTPKGQASTSENVLQALALTFPLPKIILKHR-RLSKLKSTYTD 612 Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E +N GR+ T A TGR S QN+P +R+HE Sbjct: 613 KLPEQINPKTGRVH-TSYHQAAVVTGRLSSSDPNLQNIP--ARTHE-------------- 655 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R IA G ++ AD + IE R++A + ++ LKAF G D++ Sbjct: 656 ---------GRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGLLKAFAQGLDIHQA 706 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A N+ +VT +QR K + L Y G AF +A G++ Sbjct: 707 TAAEVLNIPLERVTHEQRRSAKAINFGLMY--GMSAF-GLARQLGIS------------- 750 Query: 472 PEEWEDAENFCRWMQENHP 490 EDA+N+ + +P Sbjct: 751 ---REDAKNYIERYFDRYP 766 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 102/480 (21%), Positives = 196/480 (40%), Gaps = 47/480 (9%) Query: 1 MATLFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + T + ET + + D+ G+ + ++ +I A + PV L + + L+ Sbjct: 56 LVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAA--PNRPVILIE-FRGITNKETLR 112 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSALKAVGEAL 116 +E+ + V HN FE L ++ WI T+++++ + GLP L+ + Sbjct: 113 RFIEHPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTG 172 Query: 117 KLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L ++ ++ K+L +RN P R+ + + ++ Sbjct: 173 VLPIPDLTRSIKNKKKLKQEL----------NRNLPGSYSLMRVVARELGYSLDKSLQVS 222 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDV--ALAHTL--NQIVDVERTKLDQELESLTYG 228 +PL+ +++L Y ND + + AL + + NQ+ D + +L G Sbjct: 223 DWGKPLT--QEQLQY---AANDAAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMG 277 Query: 229 LVSSSRCLEKLKTW--LFLETGLHLEDLTETTCQRVLSSNKKLT----PQAIQVFNNRMR 282 L+ L++ W L E ED + CQ + + +L +I + +N Sbjct: 278 LMGMGLDLDR---WGELAKEIETRREDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQV 334 Query: 283 ASRSAVLKLNTLVEAMNSDGRLR-------GTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + A L ++T + ++ +L +++ S+ G P P R Sbjct: 335 IAALARLGIHTDSTSKDTLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRI 394 Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 H ++Q+ S+P+ QI + RSC + + G KL++AD + IE R+ A +A Sbjct: 395 HPNVNQMRAASGRFSFSNPNLQQIPRERQYRSCFVPAPGYKLIIADYSQIELRIAAEIAN 454 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + A+ +DL+ T A +VTK +R +GK + L Y GA + A T Sbjct: 455 DSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMGATKLRIYAET 514 >gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] Length = 920 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ H +Q +T +SDP+ LQ I +R C I +G AD + Sbjct: 642 PQTGHIHTSFNQTVTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RV+A ++G++ ++AF+ G D++ T A+ + VT+D+R K + Y Sbjct: 701 IELRVMAHLSGDKHMIEAFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIY 758 >gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421] gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421] Length = 938 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 7/138 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H + +Q +T +S+P+ I S +R + G LV AD + I Sbjct: 664 PRTDRVHTDFNQTVTTTGRLSSSNPNLQNIPVRTSFSRRIRRAFVPEPGWLLVAADYSQI 723 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA + E L+AF+TG D++ T AR + +VT ++R + K++ + Y G Sbjct: 724 ELRILAHLTQEPVLLEAFQTGGDVHTLT-ARLL-LGREEVTSEERRLAKIINYGVVYGMG 781 Query: 445 AKAFQKMASTTGLNLNTF 462 A+ F + + F Sbjct: 782 ARRFARETGVSATEAEDF 799 >gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1] gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1] Length = 927 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + + ++S+ LQ I VR +A G+ + AD + Sbjct: 649 PRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTAEGRRVREAFVAPPGRVIASADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF G D++ T A F VA QV+ +QR KV+ L Y Sbjct: 708 IELRIMAHLSGDDALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIY-- 765 Query: 444 GAKAFQKMASTTGLN 458 G +F +A G++ Sbjct: 766 GMSSF-GLARNLGID 779 >gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU] gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Acinetobacter baumannii ACICU] gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2] gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715] gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058] gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii SDF] gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 485 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 122/308 (39%), Gaps = 78/308 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGKKL+ AD + IE R+LA +A +AFE G D++ T + F V Q Sbjct: 242 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQ 301 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +T D R K + + Y G AF +A G+ E+A F + Sbjct: 302 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 342 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D +I T KK+ R+K V+ L+ + Sbjct: 343 QYFERFP--GIRD-YIDT----TKKSCREK-GYVTTLFGRVCH----------------- 377 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 Y + NN PS R+ V R N G + I + Sbjct: 378 ------YPQIRSNN-----PSERASVERQAINA---------------PIQGTAADIIRR 411 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGL 661 A++R E + A + ++L VHDE+V E PD DE A++ + +M P+ A L Sbjct: 412 AMTR---MEAALEAKRLTARMLLQVHDELVFEVPD-DEVEATIPVIAEVMEQAPAPALTL 467 Query: 662 --PLKAEG 667 PL E Sbjct: 468 SVPLVVEA 475 >gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145] gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145] Length = 920 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H Q +T ++DP+ I I +R +A EG+ L+ AD + I Sbjct: 644 PDTHRVHTSYHQALTATGRLSSTDPNLQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQI 703 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ L AF G+D++ T A +A VT DQR K + L Y Sbjct: 704 ELRLMAHLSQDEALLDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLY 760 >gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda] gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda] Length = 889 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 5/140 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VRS +A G K++ AD + IE R+L++ A + F GED++ +T A+ F + Q Sbjct: 646 VRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQ 705 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT++ R K + + Y G AF LN++ N +E+ + Sbjct: 706 VTEENRRKAKAINFGIIY--GISAF---GLAKQLNISNTEAAQYINHYFQEYPAIRQYMH 760 Query: 484 WMQENHPEHAIEDLFIGTAC 503 ++ EH IG C Sbjct: 761 ETKKFAVEHGYVKNMIGRRC 780 >gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 879 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 607 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 666 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 667 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 719 >gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] Length = 875 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 26/160 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ +V+ + DG++ T Q ++TGR S QN+P R+ E Sbjct: 589 IDGMVDLIKEDGKIHTTFQ-QTIAQTGRISSTNPNLQNIP--IRTEE------------- 632 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + S+G L+ AD + IE RVLA +A ++ + AF+ G D++ Sbjct: 633 ----------GRLIRKAFVPSQGSVLLDADYSQIELRVLADLANDEVMIDAFKNGADIHR 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 T + F V +VT QR+ K + + Y G + K Sbjct: 683 KTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSLSK 722 >gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057] gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056] gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059] gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65] gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65] Length = 916 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R A EG LV AD + I Sbjct: 639 KSQRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEEGRKIRQAFEAPEGYTLVAADYSQI 697 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ L AF+ G+D++ T A V A V +QR K + L Y G Sbjct: 698 ELRIMAHLSGDKGLLDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIY--G 755 Query: 445 AKAF 448 AF Sbjct: 756 MSAF 759 >gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1] gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1] Length = 928 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A++G ++V AD + Sbjct: 649 PLSGRVHTSYHQAVTATGRLSSADPN-LQNIPVRNDEGRRIRQAFVAAKGYRIVAADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF GED++ T + F V +V+ +QR K + L Y Sbjct: 708 IELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVPLDKVSAEQRRSAKAINFGLIY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4] gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1047 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGKKL+ AD + IE R+LA +A +AFE G D++ T + F VA Q Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +T D R K + + Y G AF +A G+ E+A F + Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 904 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D +I T K++ R+K V+ L+ + Sbjct: 905 QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 939 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 Y + NN PS R+ V R +N + G + I + Sbjct: 940 ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 973 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658 A++R E + A + ++L VHDE+V E PD DE A++ + +M P+ A Sbjct: 974 AMTR---MEDALEAKRLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1026 >gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E] gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E] Length = 965 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 326 PQNLPRPS-RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + R + R H Q +T +SDP+ LQ I +R IA +G K++ Sbjct: 683 PQMVNRKTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFIARKGFKVIA 741 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ ++ AF G+D++ +T A F +A VT +QR K + Sbjct: 742 ADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVTAEQRRSAKAINFG 801 Query: 439 LGYQGGAKAF 448 L Y G +F Sbjct: 802 LIY--GMSSF 809 >gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71] gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71] Length = 909 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q +T +SDP+ LQ I +R IA+EG ++V AD + Sbjct: 631 PRTGRIHTSYHQAVTATGRLSSSDPN-LQNIPIRTEEGRRIRQAFIAAEGYQVVAADYSQ 689 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L+AF D++ T A F V+ V+ +QR K + L Y Sbjct: 690 IELRIMAHLSKDAGLLEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINFGLIY-- 747 Query: 444 GAKAF 448 G AF Sbjct: 748 GMSAF 752 >gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024] gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4] gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4] Length = 930 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 629 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 687 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 688 RRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHTATAAEIMGVSI 747 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 V+ +QR K + L Y G AF Sbjct: 748 EDVSSEQRRRAKAVNFGLIY--GMSAF 772 >gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] Length = 897 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ TKL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA + Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LK F D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598] Length = 897 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ TKL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA + Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LK F D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] Length = 923 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 651 RVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRL 710 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 711 MAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 763 >gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116] gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116] Length = 930 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 651 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQ 709 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V+ V+ +QR K + L Y Sbjct: 710 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIY-- 767 Query: 444 GAKAF 448 G AF Sbjct: 768 GMSAF 772 >gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] Length = 914 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +V AD + IE R++A ++G+ L+AF G D++ T A F+ A Sbjct: 675 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDANMLRAFADGIDIHRATAAEIFSTGAAD 734 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR KV+ L Y G AF Sbjct: 735 VTTEQRRYAKVINFGLIY--GMSAF 757 >gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 927 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + +++P+ LQ I VR +A G+ + AD + Sbjct: 649 PRTGRVHTHYAQAVAVTGRLSSNEPN-LQNIPIRTSEGRRVREAFVAPPGRVIASADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ L+AF G D++ T A F VA QV+ +QR KV+ L Y Sbjct: 708 IELRIMAHLSGDDALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIY-- 765 Query: 444 GAKAFQKMASTTGLN 458 G +F +A G++ Sbjct: 766 GMSSF-GLARNLGID 779 >gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1052 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 121/297 (40%), Gaps = 76/297 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGKKL+ AD + IE R+LA +A +AFE G D++ T + F VA Q Sbjct: 809 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 868 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +T D R K + + Y G AF +A G+ E+A F + Sbjct: 869 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIG----------------REEASAFIK 909 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D +I T K++ R+K V+ L+ + Sbjct: 910 QYFERFP--GIRD-YIDT----TKRSCREK-GYVTTLFGRVCH----------------- 944 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 Y + NN PS R+ V R +N + G + I + Sbjct: 945 ------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAADIIRR 978 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWA 658 A++R E + A + ++L VHDE+V E PD DE A++ + +M P+ A Sbjct: 979 AMTR---MEDALEAKRLTARMLLQVHDELVFEVPD-DEVEATIPVIAGVMEEAPAPA 1031 >gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200] Length = 897 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ TKL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA + Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LK F D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18] gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] Length = 897 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLFKL--------YCELEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ TKL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA + Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAED 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LK F D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] Length = 972 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 52/286 (18%) Query: 170 EIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++F RLE PL L ++Q+ G +DV L + + E +++Q++ ++ G Sbjct: 557 DMFYRLEMPLVPV---LVRMEQS----GILLDVPYMRALGERMGRELAQIEQQIFAIA-G 608 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---------VFNN 279 + ++L LF G + +L T +R + LT QA++ + Sbjct: 609 KPFNINSGDQLSEVLF---GPKI-NLPTTGLERTRTGRYSLTAQALEELQASDTTGIIEL 664 Query: 280 RMRASRSAVLK---LNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 +R R + LK ++ L +N + GR+ LGA+ TGR S QN+P +R+ Sbjct: 665 ILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPNLQNIP--TRT 721 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 E + VR IA+ G L+ AD + IE RVLA + G+ Sbjct: 722 EEGRE-----------------------VRRGFIAAPGHVLIAADYSQIELRVLAHITGD 758 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ F G D++ T AR F V V K+QR I K + + Y Sbjct: 759 PNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIY 804 >gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01] gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01] Length = 930 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T ++DP+ LQ I +R +A G K++ D + Sbjct: 651 PSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQ 709 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q L AF G+D++ T A V+ V+ +QR K + L Y Sbjct: 710 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIY-- 767 Query: 444 GAKAF 448 G AF Sbjct: 768 GMSAF 772 >gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes HL030PA1] Length = 112 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 11/109 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET SP L K G+ YAE D +++F + D PVE+ D +P + Sbjct: 1 MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLV 98 AL + V AHN+ FER L A P +W CT+V Sbjct: 61 AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQWRCTMV 109 >gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] Length = 927 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR H +Q +T +SDP+ LQ I +R C I EG + AD + Sbjct: 649 PRTGHIHTSFNQAVTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RV+A ++ + L AF G D++ T A+ ++ ++VT+D+R K + Y Sbjct: 708 IELRVMAHLSQDANMLDAFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGIIY 765 >gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054] Length = 895 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q++ + DP+ LQ I +R + EG + L+ AD + IE Sbjct: 618 GRIHTTFNQMVAATGRLSSQDPN-LQNIPVRTEEGRAIRRAFVVGEGYETLLTADYSQIE 676 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++ ++ ++AF +GEDL+ T ++ F VAPA V + R K M L Y Sbjct: 677 LRIMAHLSEDEALIEAFTSGEDLHTTVASQVFAVAPADVDAEMRRKIKAMSYGLAY 732 >gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107] gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107] Length = 937 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G KLV AD + IE R++A ++ + L AFE G D++ T A F VA Sbjct: 698 IRQAFIAPAGYKLVAADYSQIELRIMAHLSSDSGLLSAFEKGLDVHRATAAEVFGVALDS 757 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT + R K + L Y G AF Sbjct: 758 VTPEMRRSAKAINFGLIY--GMSAF 780 >gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] Length = 914 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q P+ R H Q +T +++P+ LQ I +R IA +G L+ Sbjct: 630 LPQQINPKTGRVHTSYHQAVTTTGRLSSTNPN-LQNIPIRSAEGRRIRQAFIAPKGYCLL 688 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ L A GED++ A F++A +VT +QR K + Sbjct: 689 AADYSQIELRIMAHLSEDEKLLSALTAGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVNF 748 Query: 438 ALGYQGGAKAF 448 L Y G +AF Sbjct: 749 GLMY--GMQAF 757 >gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1] gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1] Length = 941 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 35/195 (17%) Query: 258 TCQRVLS--SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGAS 314 T + +LS +N+ +AI F ++ + V L T++ + G++ T QF+ A Sbjct: 621 TGEEILSKLANEHEIARAILDFRQMVKLKSTYVDALPTMINS--KTGKIHTTYNQFVAA- 677 Query: 315 RTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 TGR S QN+P R R E ++ V E Sbjct: 678 -TGRLSSINPNLQNIPIRTERGRE-------------------------IRKAFVPRDEN 711 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE R++A +G++ ++AF+ G D++ TT A+ F V +VT D R K Sbjct: 712 HILLAADYSQIELRIMAAFSGDESMIEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAK 771 Query: 434 VMELALGYQGGAKAF 448 + Y G AF Sbjct: 772 TANFGIIY--GISAF 784 >gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] Length = 924 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 28/144 (19%) Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPL 357 +S GR+ T +G + TGR S QN+P R + E Sbjct: 646 DSQGRVHTTFHQVGTA-TGRLSSTNPNLQNIPVRTALGRE-------------------- 684 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R+ IA+ G+KL+ AD + IE R++A + + L A+ TG+D++ T + F Sbjct: 685 ------IRAAFIAAPGRKLLSADYSQIELRLMAHFSEDPLLLNAYSTGQDIHTLTASEVF 738 Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441 VAP + K+ R K + + Y Sbjct: 739 GVAPEAMDKETRNRAKAVNFGIVY 762 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 106/485 (21%), Positives = 195/485 (40%), Gaps = 57/485 (11%) Query: 1 MATLFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQ 55 + T + ET + + D+ G+ + ++ +I A + PV E H + Sbjct: 56 LVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAA--PNRPVILIEFRSITHK----E 109 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSALKAVG 113 L+ +E+ + V HN FE L ++ WI T+++A+ + GLP L+ Sbjct: 110 SLRRFIEHHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDI 169 Query: 114 EALKLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +A L +Q ++ K+L +RN P R+ + + Sbjct: 170 KAGVLPIPNLNQSIKNKKKLKQEL----------NRNLPGSYSLMRVAARELGYSLDKSL 219 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL------NQIVDVERTKLDQELE 223 ++ +PL+ +++L Y ND V + L T NQ+ D + +L Sbjct: 220 QVSDWGKPLT--QEQLQY---AANDA--AVVLPLRDTFRSKIIENQLADAIQVELGALAR 272 Query: 224 SLTYGLVSSSRCLEKLKTW--LFLETGLHLEDLTETTCQRVLSSNKKLT----PQAIQVF 277 GL+ L++ W L E ED + C+ + + +L +I + Sbjct: 273 VAQMGLMGMGLDLDR---WGELAKEIETRREDAAKIACEVLKPDHAQLNLFGGEASINLD 329 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLR-------GTLQFLGASRTGRWSGCVFPPQNLP 330 +N + A L ++T + ++ +L +++ S+ G P P Sbjct: 330 SNEQVIAALARLGIHTNSTSKDTLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNP 389 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVL 389 R H ++Q+ S+P+ QI + RSC + + G KL++AD + IE R+ Sbjct: 390 VTHRIHPNVNQMRAASGRFSFSNPNLQQIPRERQYRSCFVPASGYKLIIADYSQIELRIA 449 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A + + A+ +DL+ T A +VTK +R +GK + L Y GA + Sbjct: 450 AEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYGMGATKLR 509 Query: 450 KMAST 454 A T Sbjct: 510 IYAET 514 >gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701] gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701] Length = 997 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H + +Q +T +S+P+ P++ S +R + EG +L+ AD + I Sbjct: 703 PETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWQLISADYSQI 762 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+L ++GE+ ++A+ G+D++ T AR + +VT D+R +GK + + Y G Sbjct: 763 ELRILTHLSGEEVLVEAYANGDDVHALT-ARLL-LDKDEVTADERRLGKTINFGVIYGMG 820 Query: 445 AKAFQKMASTTGLN 458 A Q+ A TG++ Sbjct: 821 A---QRFARETGVS 831 >gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7] gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7] Length = 860 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q +SDP+ LQ I VR+ +AS G ++V AD + Sbjct: 583 PRTGRVHTRYAQAAVITGRLASSDPN-LQNIPVRTPEGRRVRAAFVAS-GGQIVSADYSQ 640 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RV+A ++ ++ +AFE G+D++ T A F A A+V+ +QR K + L Y Sbjct: 641 IELRVMAHVSDDENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAINFGLIYGM 700 Query: 444 G 444 G Sbjct: 701 G 701 >gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] Length = 984 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 109/450 (24%), Positives = 171/450 (38%), Gaps = 80/450 (17%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 PV L D P L+ LE+ VT +A N+ ++ VL Sbjct: 446 EPVNLPPFDSDACAP--LRAMLEDPSVTKIAQNAKYDLLVL------------------- 484 Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGK-----ELIARFCKGET---HECLYDRNK---P 148 RS+G+ A VG L+S ++ G+ +L+A G T ++ L + K P Sbjct: 485 -RSSGVRVA--GVGFDTMLASYVLDPGRRSHGLDLLALEQLGHTMTAYDTLVGKGKTQLP 541 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND-----------RGY 197 +Y DV +T + +LEP+ + E L L Q I G Sbjct: 542 FDVAPVDTARDYSCEDVDITMRLRAKLEPMLA-EHALLSLFQEIEVPLVSVLAEMEWEGI 600 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +D+ +L ER +++Q + + G + KL+ LF + GL ++ T T Sbjct: 601 AIDLDWFASLKARFAAERGRVEQAIYA-EAGEEFNINSNPKLRAILFEKLGLPVKKKTAT 659 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 S ++L A VL TL+ +L GT ++ A Sbjct: 660 GPSTDASVLQEL-------------AEEGHVLP--TLLMEYREIFKLEGT--YIDA---- 698 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE 372 P PR R H Q ++ + DP+ I + +R + E Sbjct: 699 ------LPRLVHPRDRRLHTSYSQTVSATGRLSSHDPNLQNIPIRRELGRDIRRGFVPRE 752 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +L+ AD + IE RVLA ++ + + AF+ G D++ T A F V VT + RA Sbjct: 753 GWRLLSADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARA 812 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTF 462 K + A Y GA A + T F Sbjct: 813 KTINFATIYGQGAHALSRQLRITNAEAKAF 842 >gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp. novicida GA99-3549] gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549] gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] Length = 897 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLYKL--------YCELEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ KL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDAAKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKMGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAEN 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LKAF D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] Length = 976 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 31/159 (19%) Query: 292 NTLVE-AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTS 349 + LVE + + GR+ + +GAS TGR S QN+P R S + Sbjct: 686 DALVECILPATGRVHTSFSMVGAS-TGRLSSSDPNVQNIPIRTSEGRQ------------ 732 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R+ IA+EG KL+ D + IE R++A +AGEQ ++AF+ G D++ Sbjct: 733 --------------IRTAFIAAEGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIH 778 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 T + F + Q+ + R K + + Y G AF Sbjct: 779 ARTASEVFGIPLDQMDSETRRRAKAINFGIIY--GISAF 815 >gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2] gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2] Length = 942 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +S+P+ I + V++ A EG + D + IE R Sbjct: 667 GRVHTTYNQTITATGRLSSSNPNLQNIPTRSELGHTVKTAFSAGEGALFLAVDYSQIELR 726 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++G++ ++AF GED + T AR F V +VT R+ K + + Y G +A Sbjct: 727 LLAHLSGDEHLIRAFREGEDFHAETAARVFGVPVDEVTPRLRSRAKAVNFGIVY--GQQA 784 Query: 448 F 448 F Sbjct: 785 F 785 >gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra magnipapillata] Length = 542 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 11/141 (7%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382 LPR R H Q + ++DP+ LQ I VR +A+ G + AD + Sbjct: 263 LPRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPIRTAEGRRVREAFVAAPGCVIASADYS 321 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ + L+AF G D++ T A F V QV+ +QR KV+ L Y Sbjct: 322 QIELRIMAHISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKVINFGLIY- 380 Query: 443 GGAKAFQKMASTTGLNLNTFA 463 G AF +A G++ NT A Sbjct: 381 -GMSAF-GLARNLGID-NTAA 398 >gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08] Length = 920 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF +G+D + T + F VAP Sbjct: 679 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPE 738 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 739 DVSVAQRSKIKAMNYGLAY 757 >gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] Length = 902 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H +Q + +SDP+ LQ I +RS I + G L+ AD + Sbjct: 623 PRTGRIHTSYNQTVAATGRLSSSDPN-LQNIPIRTEEGRKIRSAFIPAPGWLLLSADYSQ 681 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA + ++ L+AF ED++ T A F V+P +VT + R K + + Y Sbjct: 682 IELRILAHCSKDEHLLEAFRDDEDIHRRTAAEMFGVSPIEVTPEMRRQAKTINFGIIYGM 741 Query: 444 G 444 G Sbjct: 742 G 742 >gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T +SDP+ LQ I +R IA +V Sbjct: 644 PQMINPLSKRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPPDALIVA 702 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A +A + L AF G+D++ T A F ++ +VT+DQR K + Sbjct: 703 ADYSQIELRIMAHLARDPGLLNAFAAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINFG 762 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 763 LIY--GMSAF 770 >gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured Planctomycetales bacterium HF0500_02G17] Length = 987 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q + +SDP+ P++ + +R +A G LV AD + I Sbjct: 698 PRTKRIHASFNQTVAATGRLSSSDPNLQNIPIRTELGREIRKAFVAEPGHLLVAADYSQI 757 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ + ++AF G+D++ A+ +V A+V+++QR K++ + Y G Sbjct: 758 ELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKMVNFGIVY--G 815 Query: 445 AKAF 448 AF Sbjct: 816 VTAF 819 >gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1] Length = 927 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA G + AD + IE R++A ++ + L+AFE G D++ T A F V+P Sbjct: 688 IRAAFIAPPGHVIASADYSQIELRIMAHLSQDPALLRAFEQGLDVHRATAAEVFGVSPEH 747 Query: 424 VTKDQRAIGKVMELALGYQ----GGAKAFQKMASTT 455 VT +QR K + L Y G AKA AS Sbjct: 748 VTPEQRRYAKTINFGLIYGMSPYGLAKALGIDASAA 783 >gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1] gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1] Length = 916 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379 P+ + + R H Q IT ++DP+ LQ I +R IA +G KLV A Sbjct: 634 PEMIQKTGRIHTSYHQAITATGRLSSTDPN-LQNIPIRSAEGRRIRQAFIAPKGYKLVAA 692 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + +E R++A ++ + L AF D++ T A F V+ +VT +QR K + L Sbjct: 693 DYSQVELRIMAHLSQDSGLLDAFTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGL 752 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 753 IY--GMSAF 759 >gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833] gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833] Length = 893 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I +G + L+ AD + IE R++A ++G++ + AF +G D + T AR F + P Sbjct: 654 IRKGFIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAARVFGLPPD 713 Query: 423 QVTKDQRAIGKVMELALGY 441 QVT + RA K M L Y Sbjct: 714 QVTPELRARIKAMNYGLAY 732 >gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212] gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212] Length = 916 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G +++ AD + IE R++A ++ ++ LKAF GED++ T A + Q Sbjct: 677 IREAFIAPAGYRIISADYSQIELRIMAHISQDEGLLKAFAAGEDIHSATAAEILGIPLNQ 736 Query: 424 VTKDQRAIGKVMELALGY 441 V ++QR KV+ L Y Sbjct: 737 VDQEQRRHAKVINFGLIY 754 >gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] Length = 878 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 12/130 (9%) Query: 329 LPR----PSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVV 378 LPR R H +Q +T +SDP+ I +R C + EG V Sbjct: 594 LPRMRADDGRVHTHFNQTVTTTGRLSSSDPNLQNIPVRTDFGRRIRECFVPLHEGDVFVS 653 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++G++ + AF +G D + T AR F+V +VT R+ K + Sbjct: 654 ADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVDEVTPQLRSRAKAVNFG 713 Query: 439 LGYQGGAKAF 448 + Y G +AF Sbjct: 714 IVY--GQQAF 721 >gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] Length = 682 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 4/133 (3%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARV 388 P R H QI S P+ Q+ + R+C A G+ L+ AD + IE R+ Sbjct: 411 PLTGRIHPSWQQIGAESGRMSCSRPNLQQVPREPAYRACFQAPGGRVLIKADYSQIELRL 470 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A +AGE+ L+AFE GEDL+ T AR A+ +++ R + K + L Y G++ Sbjct: 471 AAQIAGEKRMLEAFEQGEDLHTLT-AR-LVTGKAEPSREDRQLAKALNFGLLYGMGSEGL 528 Query: 449 QKMA-STTGLNLN 460 + A + GL L+ Sbjct: 529 RTYARANYGLELS 541 >gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1] Length = 892 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF +G+D + T + F VAP Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPE 710 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112] gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112] gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] Length = 897 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDKVLYKL--------YCELEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ KL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDAAKLIQQSVSLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAEN 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LKAF D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2] gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3] Length = 883 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+Q + AF +G+D + T + F VAP Sbjct: 642 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPE 701 Query: 423 QVTKDQRAIGKVMELALGY 441 V+ QR+ K M L Y Sbjct: 702 DVSVAQRSKIKAMNYGLAY 720 >gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1] gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1] Length = 908 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA +V AD + IE R++A ++ + L++F GED++ T A F + P + Sbjct: 669 IRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAEGEDVHRATAAEIFGMTPGE 728 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQK 450 VT +QR KV+ L Y A K Sbjct: 729 VTSEQRRYAKVINFGLIYGMSAHGLAK 755 >gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63] Length = 854 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 47/266 (17%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTY---GLVSSSRCLEKLKTWLFLETGLHLE 252 G CVD + +++ + +ELE+ Y G + ++L LF GL + Sbjct: 471 GVCVDRQGIESYGEMLSAQI----KELETAIYESAGCEFNINSPKQLGVVLFENLGLPCK 526 Query: 253 DLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT-----LVEAMNSDGRL 304 T++ T VL S + P V R + KLN+ L++ + DGR+ Sbjct: 527 KKTKSGYSTNAEVLESLRYEHPVVEMVLRYR------TLSKLNSTYCEGLLKVIADDGRI 580 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 +RTGR S QN+P + E+ Sbjct: 581 HSNFN-QTETRTGRISSTEPNLQNIPVRTELGREM------------------------- 614 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R A +G LV AD + IE RVLA ++G++ +KAF+ ED++ T ++ FN+ V Sbjct: 615 RKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAITASQVFNMPLDMV 674 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQK 450 T R+ K + + Y GA + K Sbjct: 675 TPIMRSRAKAVNFGIVYGIGAFSLAK 700 >gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279] gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279] Length = 1273 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P+ R H +Q T + DP+ I I +R A+ G +LVVAD + I Sbjct: 566 PKTGRLHTRFNQTGTATGRLSSVDPNLQNIPVRTEIGRRIRKAFRAAPGMRLVVADYSQI 625 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 E RVLA ++G++ + F G D++ T A F + P +V +QR K + Sbjct: 626 ELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVGAEQRRAAKCL 676 >gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 893 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382 P R H +Q +T +SDP+ LQ I VR+ EG L+ AD + Sbjct: 614 PDTGRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFEPGEGYDALLSADYS 672 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA M+G++ + AF G+D++ T + F V A+VT QR K + + Y Sbjct: 673 QIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSAKAVNFGIVY 731 >gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured gamma proteobacterium HF0070_03O15] Length = 454 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 49/261 (18%) Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + SS + LEKL+ L L D + + L + +P + + R R Sbjct: 114 FNIKSSKQLLEKLE--LVLGYTPVNNDGKPSVAKDALKNCAADSPTIQTLMTWKRREKRR 171 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 +++ ++ + M++DG +R + LGA TGR S Q +PR S Sbjct: 172 QMIE--SIQDKMSNDGFVRASYMQLGAD-TGRMSSIKPNNQQIPRDSE------------ 216 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 R CV A +G K+V AD + +E R+ A +A ++ AF+ GE Sbjct: 217 -----------------FRQCVQAPQGWKIVDADFSQMELRLAAALAKDKNMTAAFQRGE 259 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL-NTFAHL 465 DL+ T A+ R I K L Y GA+ +K A ++G+ + N A Sbjct: 260 DLHDYT---------AEQMGCDRQIAKSANFGLLYGAGAEGLRKYAGSSGVIMTNDEAVK 310 Query: 466 VKTN-----SAPEEWEDAENF 481 ++ N S +W+ N+ Sbjct: 311 IRDNWLTTYSGIRDWQREMNY 331 >gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937] gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937] Length = 944 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T +SDP+ LQ I +R IA EG +++ Sbjct: 661 PQMINPLTRRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFIAPEGYRILA 719 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ + L+AF G D++ T A F + +VT +QR K + Sbjct: 720 ADYSQIELRIMAHLSRDAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFG 779 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 780 LIY--GMSAF 787 >gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586] gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586] Length = 929 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T +SDP+ LQ I +R IA +G +++ Sbjct: 646 PQMINPLTKRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFIAPQGYQILA 704 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ + LKAF G D++ T A F + +VT +QR K + Sbjct: 705 ADYSQIELRIMAHLSRDAGLLKAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINFG 764 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 765 LIY--GMSAF 772 >gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] Length = 896 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L+TL +N GR+ + G TGR S QNLP +E Sbjct: 610 LDTLPTLVNPVTGRIHASYHQTGTG-TGRLSSSNPNMQNLPIKGEEGKE----------- 657 Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R CV+ + K++ AD + IE RVLA + ++ + AF+ GED+ Sbjct: 658 --------------IRKCVVPQKSDWKIISADYSQIELRVLAHFSEDERLISAFKNGEDV 703 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + T +R + V+ VT + R +GK++ ++ Y Sbjct: 704 HALTASRLYGVSVKDVTPEMRQVGKMVNFSIIY 736 >gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58] gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58] Length = 878 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 6/134 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR------SCVIASEGKKLV 377 P Q P+ R H +Q+ T DP+ I R + ++ E + Sbjct: 595 LPRQVAPQTQRIHATFEQMGTATGRLACRDPNLQNIPKRSSRGLSLREAFLVPCETVSFL 654 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA ++ ++ L AF GED++ T ++ F+V QVTK QR K + Sbjct: 655 AADYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKTVNF 714 Query: 438 ALGYQGGAKAFQKM 451 + Y A K+ Sbjct: 715 GIIYGQQAYGLSKI 728 >gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 893 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382 P R H +Q +T +SDP+ LQ I VR+ EG L+ AD + Sbjct: 614 PDTGRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFEPGEGYDALLSADYS 672 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA M+G++ + AF G+D++ T + F V A+VT QR K + + Y Sbjct: 673 QIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSAKAVNFGIVY 731 >gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 923 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I +R +A G K++ D + Sbjct: 644 PATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQ 702 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L AF G+D++ T A + QV+ +QR K + L Y Sbjct: 703 IELRIMAHLSGDKALLDAFRHGKDIHAATAAEILGLDIEQVSSEQRRRAKAINFGLIY-- 760 Query: 444 GAKAF 448 G AF Sbjct: 761 GMSAF 765 >gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8] gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8] Length = 949 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q T +SDP+ P++ + +R + +G L+ AD A I Sbjct: 670 PETGRLHTSFNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQI 729 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+LA M+G+ F+ G D++ AR + + P VT +QR+ K + + Y Sbjct: 730 ELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPY 786 >gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 895 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 32/216 (14%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+ LF E G+ T+T +S L ++ F + R A KL +VE Sbjct: 550 KQLQQVLFEELGMPKTRSTKTGYSTDAASLADLQEKSPHPFLGLLLQHRDAT-KLKQIVE 608 Query: 297 ----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 ++ DGR+ T G S TGR S QN+P + E+ Sbjct: 609 TLERSVTGDGRIHTTYDQTGTS-TGRISSNDPNLQNIPIRTEEGREIRS----------- 656 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 S V E + L+ AD + IE R++A ++ + ++AF GEDL+ Sbjct: 657 -------------SFVSGGEDETLLTADYSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFV 703 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F V P +VT R K M L Y G AF Sbjct: 704 GSRVFGVPPEEVTPLMRTKVKAMSYGLAY--GLSAF 737 >gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1] gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1] Length = 904 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q + +SDP+ LQ I +R +AS G +L+ AD + +E Sbjct: 629 GRVHTSYHQAVAATGRLSSSDPN-LQNIPVRTPEGRRIRKAFVASPGHRLITADYSQVEL 687 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++G++ +AFE GED++ T A F A +V +QR K + L Y Sbjct: 688 RIMAHLSGDEGLRRAFEQGEDIHRATAAEVF--AADEVNDEQRRAAKAINFGLIY 740 >gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855] gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855] Length = 926 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q T +SDP+ P++ + +R + +G L+ AD A I Sbjct: 647 PETGRLHTSFNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQI 706 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+LA M+G+ F+ G D++ AR + + P VT +QR+ K + + Y Sbjct: 707 ELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPY 763 >gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4] gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4] Length = 892 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 7/119 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H +Q +T+ +S+P+ LQ I +R IA+EG L+ AD + IE Sbjct: 617 GRVHTSYNQAVTNTGRLSSSEPN-LQNIPIRSEEGRSIRHAFIAAEGCLLLSADYSQIEL 675 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA ++ ++ AF ED++ T A F + P VT++ R K + + Y GA Sbjct: 676 RVLAHLSADRVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTINFGVIYGQGA 734 >gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205] gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205] Length = 921 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T ++DP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 649 RVHTSYHQALTATGRLSSTDPNLQNIPIRTPIGRQIRKAFIAPEGRVLLAADYSQIELRL 708 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A +A VT DQR K + L Y Sbjct: 709 MAHFSQDDALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 761 >gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703] gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703] Length = 931 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I +R IA EG +V AD + Sbjct: 652 PLTKRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEGRRIRQAFIAPEGYCIVAADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + LKAF G D++ T A F + +VT +QR K + L Y Sbjct: 711 IELRIMAHLSCDAGLLKAFSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320] gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320] Length = 932 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G K+V AD + IE R++A ++ ++ L AF G+D++ T + F + + Sbjct: 692 IRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLDE 751 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 752 VTSEQRRSAKAINFGLIY--GMSAF 774 >gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4] gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4] Length = 899 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIEA 386 R H +Q + ++DP+ LQ I +R + EG L+ AD + IE Sbjct: 623 RIHTTFNQTVAATGRLSSTDPN-LQNIPVRTEDGRRIRGSFVVGEGYDCLLTADYSQIEM 681 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RV+A ++G+ ++AF TGEDL+ +R+F V QVT + R K M L Y G Sbjct: 682 RVMAHLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTPELRRRVKAMSYGLAY--GLS 739 Query: 447 AFQKMASTTGLN 458 AF +A+ G++ Sbjct: 740 AF-GLAAQLGIS 750 >gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49] gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49] Length = 949 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 10/148 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS------ 361 L++ G ++ P Q P R H + Q + +++P+ LQ I Sbjct: 648 LEYRGLAKLKSTYVDALPLQVEPATQRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTERG 706 Query: 362 -DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 ++ V E L+ AD + IE R++A ++ E+ ++AF+ GED++ +T ++ F+V Sbjct: 707 RQVRKAFVPRDENYVLLAADYSQIELRIIAALSQEETMMEAFKNGEDIHASTASKVFDVP 766 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAF 448 +VT++QR+ K + + Y G AF Sbjct: 767 LEEVTREQRSNAKTVNFGIIY--GVSAF 792 >gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] Length = 932 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q +T +S+P+ LQ I +R I +G AD + Sbjct: 654 PETGRIHTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCIFFSADYSQ 712 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF+ G+D++ T ++ + V +VT++QR+ K + Y Sbjct: 713 IELRIMAHLSGDPHMIEAFQKGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIY 770 >gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130] gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130] Length = 978 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 78/308 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA++G KLV AD + IE RVLA MA +AF G D++ T + FNV Sbjct: 735 IRTAFIAADGHKLVSADYSQIELRVLAHMADISQLKQAFADGIDIHAMTASEMFNVPVEG 794 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 + R K + + Y G AF +A+ G++ +A ++ + Sbjct: 795 MDPSIRRQAKAINFGIIY--GISAF-GLANNLGIDRG----------------EASDYIK 835 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D T K + ++H V ++ +R Sbjct: 836 MYFERFP--GIRDYMDET------KKFAREHGYVETIFG-------------------RR 868 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 P + K N P R+ N R+ +N + G + I + Sbjct: 869 AHYPEI---KSSN------PQMRAF------NERAAINAPIQ---------GSAADIIRR 904 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSNPSWAKGL 661 A++R EG + A K ++L VHDE++ E PD DE +A++ + +M P A L Sbjct: 905 AMAR---MEGALAAEKLSAQMLLQVHDELIFEVPD-DEVDATIETVVKVMEDAPMPALSL 960 Query: 662 --PLKAEG 667 PL+ + Sbjct: 961 SVPLQVDA 968 >gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] Length = 950 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++A N SDGR+ T + A+ TGR S QN+P Sbjct: 661 VQTLIDATNGSDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP------------------- 700 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 DP +I RS + EG + L+ +D + +E R++A ++G++ ++AF +G D Sbjct: 701 -NRDPAGREI-----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDF 754 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + V ++T DQR+ K M L Y Sbjct: 755 HKYVASLVYGVPVDEITSDQRSHVKAMSYGLAY 787 >gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400] Length = 891 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 7/132 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q +T+ +S+P+ LQ I +R IA EG ++ AD + Sbjct: 613 PASGRVHTSYNQTVTNTGRLSSSEPN-LQNIPVRTDEGRKIRRAFIAEEGHLILSADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA ++ ++ AF ED++ T A F + P VT + R K + + Y Sbjct: 672 IELRVLAHLSEDRVFCDAFARDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQ 731 Query: 444 GAKAFQKMASTT 455 GA + K T Sbjct: 732 GAFSLAKQLGIT 743 >gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101] Length = 1020 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H + +Q +T +S+P+ P++ S +R + G +L+ AD + I Sbjct: 726 PETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPEAGWQLISADYSQI 785 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++GE+ ++A++ G+D++ T AR + +V+ D+R +GK + + Y G Sbjct: 786 ELRILAHLSGEEVLVQAYQQGDDVHALT-ARLL-LEKDEVSADERRLGKTINFGVIYGMG 843 Query: 445 AKAFQKMASTTGLN 458 A Q+ A TG++ Sbjct: 844 A---QRFARETGVS 854 >gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] Length = 933 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I +R IA G ++V AD + Sbjct: 654 PVSGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPAGYRIVAADYSQ 712 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T F + +VT +QR K + L Y Sbjct: 713 IELRIMAHLSQDRGLLNAFAAGKDIHRATAGEVFGLPLDKVTNEQRRSAKAINFGLIY-- 770 Query: 444 GAKAF 448 G AF Sbjct: 771 GMSAF 775 >gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004] gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 932 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T + DP+ LQ I +R IA EG ++ Sbjct: 649 PQMVNPLTKRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNDEGRRIRQAFIAPEGYCIMA 707 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ ++ L+AF G+D++ T A F V +VT +QR K + Sbjct: 708 ADYSQIELRIMAHLSQDKGLLEAFAQGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFG 767 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 768 LIY--GMSAF 775 >gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105] gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105] Length = 927 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 10/133 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q + ++DP+ LQ I VR IA+ G LV AD + I Sbjct: 650 RTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRVREAFIAAPGCVLVSADYSQI 708 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ + AF G D++ T + F V +VT D R KV+ L Y G Sbjct: 709 ELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINFGLIY--G 766 Query: 445 AKAFQKMASTTGL 457 AF +A G+ Sbjct: 767 MSAF-GLAGNLGI 778 >gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 874 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382 P R H +Q +T +SDP+ LQ I VR+ EG L+ AD + Sbjct: 595 PATGRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFTPGEGYDALLSADYS 653 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA M+G+ + AF G+D++ T A F V VT +QR K + + Y Sbjct: 654 QIELRILAHMSGDATLIDAFRQGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVY 712 >gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] Length = 937 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 25/219 (11%) Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 T G+ + ++L+ LF + T+T + S + L Q F + A R Sbjct: 578 TGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHR 637 Query: 286 SAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A T L+E + DGR+ T A+ TGR S QN+P + + + + Sbjct: 638 DATKLRQTVEGLLETVAPDGRIHTTYSQTAAA-TGRLSSLHPNLQNIPVRTEAGRRIRGV 696 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++D V A E L+ AD + IE R++A ++ ++ ++AF Sbjct: 697 F----------------VADEV-----AGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAF 735 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 GEDL+ ++ F V P +VT +QRA K M L Y Sbjct: 736 REGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAY 774 >gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis] Length = 920 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H Q +T ++DP+ I I +R +A EG+ L+ AD + I Sbjct: 644 PDTHRVHTSYHQALTATGRLSSTDPNLQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQI 703 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ L AF G+D++ T A + +VT DQR K + L Y Sbjct: 704 ELRLMAHLSQDEALLDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNFGLLY 760 >gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] Length = 935 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 ++ L F G ++ P PR R H +Q + +++P+ LQ I Sbjct: 629 IQTILNFRGLAKLKSTYVDALPKMVNPRTGRIHSSFNQALAATGRLSSNNPN-LQNIPVR 687 Query: 361 ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + R+ + + L+ AD + IE R++A ++G+ L+AF+ +D++ T A+ Sbjct: 688 TPEGAKVRRAFIPRDDQHTLLSADYSQIELRLIADISGDVAMLEAFQNNQDIHTATAAKV 747 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 FNV VT++QR K + ++ Y GA + S Sbjct: 748 FNVPFDLVTREQRYQAKTVNFSILYGAGATNLSRQLS 784 >gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] Length = 931 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T ++DP+ LQ I +R +A G K++ D + IE Sbjct: 655 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAPHGYKIMAVDYSQIEL 713 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++G+Q L AF+ G+D++ T A QV+ +QR K + L Y G Sbjct: 714 RIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIY--GMS 771 Query: 447 AF 448 AF Sbjct: 772 AF 773 >gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12] gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12] gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12] Length = 894 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 35/268 (13%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L LFL+ L T+T + + L+ Q Q+ +N + + A LK NT V+ Sbjct: 550 KQLGEILFLKLNLPTGKKTKTGFSTDVEVLEHLSSQGFQIASNLLEYRKLAKLK-NTYVD 608 Query: 297 ---AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 M +G T + TGR S QN+P ++ E + Sbjct: 609 PIPKMTGEGDRIHTCYHQIGTVTGRLSSSDPNLQNIP--VKTEEGIR------------- 653 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R IA EG KL+ D + +E RVLA ++ ++ LKA++ +DL+ T Sbjct: 654 ----------IRQGFIAREGWKLLSIDYSQVELRVLASLSKDENLLKAYQEKQDLHSVTA 703 Query: 414 ARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 R F + +V+++QR + K++ ++ Y G F +A G+++ +K A Sbjct: 704 KRIFELQEDEEVSREQRIMAKIINFSIIY--GKTPF-GLAKELGISVKDAGEYIKRYFA- 759 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIG 500 ++ F R + EH + + G Sbjct: 760 -QYPRVAQFERQVITFAEEHGYVETYFG 786 >gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 778 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 26/151 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L +L E ++ DGR+R T + + TGR S QNL P R+ E Sbjct: 492 LESLEECIDGDGRIRSTFK-QNVTATGRLSSTEPNLQNL--PIRTEE------------- 535 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R A K L+ AD + IE RVLA +A ++ +AF D++ Sbjct: 536 ----------GRKIRKAFKADNEKILIDADYSQIELRVLAHLANDKKMQEAFSHDIDIHT 585 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + FN +VTK QR+ K + + Y Sbjct: 586 KTASEVFNTPIDEVTKLQRSEAKAVNFGIIY 616 >gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523] Length = 897 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 131/316 (41%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNHFKALLEQDETLYKL--------YCEIEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ TKL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDATKLIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++ + R+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDVNSRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAEN 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LKAF D++ T A + +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQSLDIHSATAAEVLGIGIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591] gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591] Length = 928 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T +SDP+ LQ I +R IA EG ++ Sbjct: 645 PQMINPLTKRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEQGRRIRQAFIAPEGYHILA 703 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ + L+AF G D++ T A F + +VT +QR K + Sbjct: 704 ADYSQIELRIMAHLSRDAGLLRAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFG 763 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 764 LIY--GMSAF 771 >gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] Length = 926 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A +G +V AD + IE R++A ++G+ AF+ ED++ T A F VAP + Sbjct: 687 VRRAFNAPDGYLIVSADYSQIELRIMAHLSGDATLQAAFQNNEDVHRRTAAEVFGVAPEK 746 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +T +QR K + L Y G +A + G++ + A +K Sbjct: 747 ITLEQRRYAKTINFGLIYGMGEYG---LAKSLGIDNVSAAMFIK 787 >gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] Length = 859 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 31/169 (18%) Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A KLN+ L++ + DGR+ A RTGR S QN+P Sbjct: 564 ACQKLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIP----------- 611 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 I T + + + R+ +A G LV AD + IE R+LA + G+ +A Sbjct: 612 IRTEMGSKL--------------RAYFVAKPGCVLVDADYSQIELRILAHVTGDAHMQEA 657 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 F +G D++ +T A+ +N+ P VT R+ K + + Y GA + K Sbjct: 658 FLSGADIHRSTAAKIYNIRPEDVTPRLRSSAKAINFGIMYGKGAYSLSK 706 >gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] Length = 889 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 31/158 (19%) Query: 289 LKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 +KL +V++++ SDGR+ T + A+ TGR + QN+P +RS + + Sbjct: 595 IKLKQMVDSLSATVASDGRIHTTFSQVAAA-TGRLASSDPNLQNIP--ARSADGM----- 646 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R +A EG + L+ AD + IE R++A ++G++ ++AF Sbjct: 647 ------------------RIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFN 688 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +GEDL+ T + F A+V+ ++R+ K L Y Sbjct: 689 SGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAY 726 >gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1] gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1] Length = 914 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 32/176 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 F + A R A + ++ L++ + DGR+ T A+ TGR S QN+P + Sbjct: 609 FLEHLLAHRDATRLKVTVDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT 667 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392 + + +R + EG L+ AD + IE R++A + Sbjct: 668 DAGRQ-------------------------IRDGFVVGEGYDSLLTADYSQIEMRIMAHV 702 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +G++ ++AF TGEDL+ AR+F V +VT + R K M L Y G AF Sbjct: 703 SGDEGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAY--GLSAF 756 >gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC] gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC] Length = 887 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 36/246 (14%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A TL Q+ + KL +ELE YG L ++L LF + GL + T+T Sbjct: 508 ASTLIQLQNEFTVKL-KELEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 566 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + + L++ + DGR+ LQ L A T Sbjct: 567 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 623 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +++ + + S+PD + SC Sbjct: 624 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 662 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435 D + +E RVLA ++G+Q +AF+TG D++ T + F++ +P QVT R K + Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAV 719 Query: 436 ELALGY 441 + Y Sbjct: 720 NFGIVY 725 >gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3] Length = 829 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 26/157 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + DGR+ T + +RTGR S QN+P + E+ + T Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRTPLGREMRRFFT--------- 595 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 A +G LV AD + IE RVLA ++G++ KAF G D++ T Sbjct: 596 ----------------AKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTA 639 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ FN VT D R+ K + + Y GA + K Sbjct: 640 SQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSK 676 >gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827] gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827] Length = 888 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 27/152 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L++A+ DGR+ T A+ TGR S QN+P I Sbjct: 600 VDGLLKAVADDGRIHTTFHQTIAA-TGRLSSTDPNLQNIP-------------------I 639 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +D +R + G +L+ AD + IE R++A ++G++ ++AF +GEDL+ Sbjct: 640 RTDE------GRRIREGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLH 693 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +++F+V +VT +QR K M L Y Sbjct: 694 TFVASKAFSVPTGEVTAEQRRRVKAMSYGLAY 725 >gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG] gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG] Length = 897 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 61/316 (19%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVALAHTLNQI---- 210 + +Y D +T +F + L +++ L+ L YC +++ L LNQ+ Sbjct: 462 IVAKYAAEDADITFRLFNYFKALLEQDKVLYKL--------YCELEMPLTIILNQMEKTG 513 Query: 211 VDVERTKLDQ----------ELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTET 257 V ++ KL Q ELES Y L L +L+ LF + GL + +T Sbjct: 514 VKIDAAKLIQQSASLETSIKELESKCYNLAGQEFKLSSPVQLREILFEKLGL--PPVKKT 571 Query: 258 TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 +V +S + L A ++ M+ + LK + L + ++++GR+ + G Sbjct: 572 AKGQVSTSEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG 631 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P S P+ +I R IA Sbjct: 632 -TVTGRLSSSDPNLQNIPIKS--------------------PEGRKI-----REAFIAEN 665 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE R++A ++ ++ LKAF D++ T A ++ +V+ +QR Sbjct: 666 GYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKA 725 Query: 433 KVMELALGYQGGAKAF 448 K + L Y G AF Sbjct: 726 KAINFGLIY--GMSAF 739 >gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] Length = 894 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +RS + EG + L+ AD + IE R++A ++G+ ++AFE GEDL+ + F V PA Sbjct: 653 IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIFGVEPA 712 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 V+ R K M L Y G AF Sbjct: 713 DVSPAMRTKVKAMSYGLAY--GLSAF 736 >gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309] gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309] Length = 908 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 31/158 (19%) Query: 289 LKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 +KL +V++++ SDGR+ T + A+ TGR + QN+P +RS + + Sbjct: 614 IKLKQMVDSLSATVASDGRIHTTFSQVAAA-TGRLASSDPNLQNIP--ARSADGM----- 665 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R +A EG + L+ AD + IE R++A ++G++ ++AF Sbjct: 666 ------------------RIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFN 707 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +GEDL+ T + F A+V+ ++R+ K L Y Sbjct: 708 SGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAY 745 >gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656] gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656] Length = 903 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 + H L+Q IT +++P+ P++I + +R + EG V +D + IE R Sbjct: 628 GKIHTTLNQTITATGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELR 687 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA ++G++ ++AF+ G+D++ +T + F+ +VT QR K + + Y G A Sbjct: 688 VLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVY--GISA 745 Query: 448 F 448 F Sbjct: 746 F 746 >gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] Length = 909 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 10/132 (7%) Query: 329 LPRP-----SRSHEELDQIITHLPTSITSDPD--PLQIISD---CVRSCVIASEGKKLVV 378 LPR R H +Q++T +S+P+ + I S+ C+R I +G ++ Sbjct: 625 LPRKIDLNTHRLHTSYNQVVTATGRLSSSNPNLQNIPIFSEQGSCIRGAFITGKGNVIIS 684 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++ ++ +Q L+AF +D++ T + FN+ +VT + R K + Sbjct: 685 ADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETASTMFNIPIDEVTSEYRRRAKAINFG 744 Query: 439 LGYQGGAKAFQK 450 L Y A K Sbjct: 745 LIYGMSAYGLAK 756 >gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a] Length = 829 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 26/157 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + DGR+ T + +RTGR S QN+P + E+ + T Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRTPLGREMRRFFT--------- 595 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 A +G LV AD + IE RVLA ++G++ KAF G D++ T Sbjct: 596 ----------------AKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTA 639 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ FN VT D R+ K + + Y GA + K Sbjct: 640 SQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSK 676 >gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 943 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R I ++G KL+ AD + Sbjct: 665 PKTGRIHTNFSQATAVTGRLASSDPN-LQNIPVRTEEGRRIREAFIPADGCKLLSADYSQ 723 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A +A ++ L AF+ G+D++ T A F + V +QR KV+ L Y Sbjct: 724 IELRIMAHIAEDENLLTAFKEGKDVHQATAAEIFGIPLDDVNSEQRRYAKVINFGLIY-- 781 Query: 444 GAKAFQKMASTTGL 457 G AF +A G+ Sbjct: 782 GMSAF-GLAGNLGI 794 >gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629] gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1] Length = 903 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 + H L+Q IT +++P+ P++I + +R + EG V +D + IE R Sbjct: 628 GKIHTTLNQTITATGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELR 687 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA ++G++ ++AF+ G+D++ +T + F+ +VT QR K + + Y G A Sbjct: 688 VLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVY--GISA 745 Query: 448 F 448 F Sbjct: 746 F 746 >gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] Length = 874 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382 P R H +Q +T +SDP+ LQ I VR+ EG L+ AD + Sbjct: 595 PATGRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFTPGEGYDALLSADYS 653 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA M+G+ + AF G+D++ T A F V VT +QR K + + Y Sbjct: 654 QIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVY 712 >gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118] Length = 886 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 36/246 (14%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A TL Q+ + KL +ELE YG L ++L LF + GL + T+T Sbjct: 507 ASTLIQLQNEFAVKL-KELEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 565 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + + L++ + DGR+ LQ L A T Sbjct: 566 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 622 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +++ + + S+PD + SC Sbjct: 623 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 661 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435 D + +E RVLA ++G+Q +AF+TG D++ T + F++ +P QVT R K + Sbjct: 662 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAV 718 Query: 436 ELALGY 441 + Y Sbjct: 719 NFGIVY 724 >gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] Length = 872 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H +Q++T +++P+ LQ I +R +A E K+L+ D + Sbjct: 591 PKTERIHTSFNQLVTATGRLSSTEPN-LQNIPIRTEEGRRIRKVFVAEERKELLAVDYSQ 649 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA ++ ++ + A+ G+D++ T A F + ++V+ QR K + + Y Sbjct: 650 IELRVLAHISQDENLIAAYREGQDIHTKTAAEVFGLEASEVSYQQRRRAKAINFGIAY 707 >gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] Length = 932 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G +++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPQGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 896 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 109/463 (23%), Positives = 175/463 (37%), Gaps = 113/463 (24%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQV--------LKEALENTDVTIVAHNSYFERTVLKAC 83 L GF HP + W + P+ ++ +K EN+ + HN ++ VL+ Sbjct: 345 LVGIGFGIHPKKAW---YVPLNGKLGKQRVLEGVKPLFENSAIGFYGHNVKYDWHVLQ-- 399 Query: 84 FNLDIPIHRWICTLVLA--------RSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFC 134 N I I +LA R + L AL+ G+ S+ + +GK +++ Sbjct: 400 -NEGIQIQNICFDTILASYILNAHSRQHSLEVLALEYFGKVTIPISELIGKGKNVLSM-- 456 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN- 193 R+ P R EYC DV T + + LE KE++L L I Sbjct: 457 ----------RDVPIER-----VTEYCCEDVDFTCRLKEVLEK-QLKERDLLNLYHQIEL 500 Query: 194 ----------DRGYCVDVALAHTLNQIVDVERTKLDQELESL---TYGLVSSSRCL---E 237 RG VD+ L++ +L QEL++L Y + L + Sbjct: 501 PLLVVLAKMERRGIYVDIPYLEQLSK-------ELTQELKTLQESIYTMAGEEFNLNSPK 553 Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++ LF++ G+ T T T VL K P A ++ R+ Sbjct: 554 QVSELLFIKLGIPAPKKTATGHSTSAEVLEFLKNDYPLAGKILEYRLLE----------- 602 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +LR T ++ A P Q +PR R H +Q + + DP Sbjct: 603 --------KLRST--YVDA----------LPSQVIPRTHRIHSTFNQSVAATGRLSSQDP 642 Query: 355 DPLQI---------ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + I I R EG + AD + IE R+LA ++ + + AF+ Sbjct: 643 NLQNIPIRTEEGRKIRGAFRP---EKEGWSFLSADYSQIELRLLAHLSQDPVLMAAFQNN 699 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ED++ T A F + QV+K+QR K + + Y G +AF Sbjct: 700 EDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGIIY--GQQAF 740 >gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237] gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237] Length = 945 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 LV AD + IE R++A ++ E ++AF+ GED++ +T ++ FNV +VT++QR+ K + Sbjct: 718 LVAADYSQIELRIIAALSEETTMIEAFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTV 777 Query: 436 ELALGYQGGAKAF 448 + Y G AF Sbjct: 778 NFGIIY--GVSAF 788 >gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 937 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR IA G ++ AD + IE R++A ++ + LKAF G D++ T + FNV A+ Sbjct: 698 VREAFIAPPGHVILSADYSQIELRIMAHISEDPGLLKAFAEGLDVHRATASEVFNVPVAE 757 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V+ +QR KV+ L Y G AF +AS G+ Sbjct: 758 VSSEQRRYAKVINFGLIY--GMGAF-GLASNLGI 788 >gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 103 Score = 54.3 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID +T S +++TKCG KYAE + ++LF D PV ++D +P+ + Sbjct: 2 MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61 Query: 59 EALENTDVTIVAHNSYFERTVL 80 AL + +VT A N+ FER L Sbjct: 62 AALSDENVTKWAFNASFERVCL 83 >gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] Length = 932 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 32/210 (15%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L+ LF E GL ++ T+T T Q VL L P ++ R A L++ Sbjct: 588 KQLREVLFDEIGLPVQKRTKTGPSTDQSVLEKLAPLHPLPAKIIEYRQLAKLKGTY-LDS 646 Query: 294 LVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L + +N GR+ + + A+ TGR S QN+P Sbjct: 647 LPKLINQQTGRIHASFNQVVAA-TGRLSSSDPNLQNIP--------------------IR 685 Query: 353 DPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 P+ Q VR I E G +L+ D + IE RVLA +G+ +AF++G+D++ Sbjct: 686 TPEGRQ-----VRKAFIPGEPGWELLCCDYSQIELRVLAHFSGDAALQEAFQSGKDIHTA 740 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A F V A V D R + K + + Y Sbjct: 741 VAAEVFEVDEANVDSDMRRVAKAVNFGVIY 770 >gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] Length = 903 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 15/173 (8%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +SDP+ LQ I +R IA G +LV AD + IE R Sbjct: 629 RVHTSYHQAVTATGRLSSSDPN-LQNIPIRSTEGRRIRQAFIAPPGYRLVAADYSQIELR 687 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++ ++ L AFE ED++ T F VT +QR K + L Y A Sbjct: 688 IMAHLSEDEGLLAAFEAEEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAHG 747 Query: 448 FQKMASTTGLNLNTFAHLVKT--NSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + G+N H ++ P EN C Q+ + +E LF Sbjct: 748 ---LGRQLGINRTAAQHYIERYFQRYPGVKAYMENIC---QQARQKGYVETLF 794 >gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985] gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985] Length = 903 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 29/156 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++A+ DGR+ T + + TGR S QN+P R+ E Sbjct: 618 LIKAVGPDGRIHTTFR-QDVAATGRLSSTDPNLQNIP--VRTEE---------------- 658 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 + +R + EG + L+ AD + IE R++A ++G++ ++AF TGEDL+ Sbjct: 659 -------ARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFV 711 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R+F V QV + R K M L Y G AF Sbjct: 712 ASRAFGVPIDQVGAELRRRVKAMSYGLAY--GLSAF 745 >gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183] gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183] Length = 906 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 11/133 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIE 385 R H +Q++ ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 629 GRIHTTFNQMVAATGRLSSTDPN-LQNIPIRTAEGRQIREGFVVGEGYECLLTADYSQIE 687 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++G++ ++AF +G D + T +R F + P Q+ + RA K M L Y G Sbjct: 688 LRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIKAMNYGLAY--GL 745 Query: 446 KAFQKMASTTGLN 458 F +AS G+ Sbjct: 746 SPF-GLASQLGIT 757 >gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] Length = 921 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ H +Q T +SDP+ LQ I +R C I +EG AD + Sbjct: 643 PKTGNIHTSFNQATTATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPNEGCLFFSADYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G++ ++AF G D++ T A+ + +VT+D+R K + Y Sbjct: 702 IELRIMAHLSGDENMIEAFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIY 759 >gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] Length = 954 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T +SDP+ LQ I +R IA +G ++ AD + IE Sbjct: 680 GRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIEL 738 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A +A + +KAF G+D++ +T A F V VT +QR K + L Y Sbjct: 739 RIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIY 793 >gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071] gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071] Length = 914 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 637 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIE 695 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ + AF +GEDL+ T FNV PA V + R K M L Y G Sbjct: 696 LRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPAAVDAEMRRKIKAMSYGLAY--GL 753 Query: 446 KAF 448 AF Sbjct: 754 SAF 756 >gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165] gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165] Length = 954 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T +SDP+ LQ I +R IA +G ++ AD + IE Sbjct: 680 GRVHTSYHQAVTATGRLSSSDPN-LQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIEL 738 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A +A + +KAF G+D++ +T A F V VT +QR K + L Y Sbjct: 739 RIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIY 793 >gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49] gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49] Length = 704 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 30/186 (16%) Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330 A+Q + +A+++ ++ L E +NS G++ +L GA +GR+S C P Q +P Sbjct: 403 AVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 460 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389 R R C V S +A K ++AD + IE R+ Sbjct: 461 RERR-------------------------FRACFVPSKTVAGRPGKFIIADFSQIELRIA 495 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A ++ ++A+ GEDL+ T + N P+ ++K R + K + L Y A F+ Sbjct: 496 ADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFR 555 Query: 450 KMASTT 455 AS+ Sbjct: 556 GYASSA 561 >gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] Length = 886 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 38/211 (18%) Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF GL T+T T RVL S + P + R L+T Sbjct: 544 QLAVVLFERLGLPAGRKTKTGYSTDARVLESLRDAHPIVAAILRFRELDK-----LLSTF 598 Query: 295 VEAMNS----DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 E + S DGR+ T +RTGR S QN+P R+ E Sbjct: 599 YEGLRSEIGADGRIHATFN-QAVARTGRISSERPNLQNIP--VRTDE------------- 642 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 R +A+EG LV AD + IE RVLA ++G++ ++ D++ Sbjct: 643 ----------GKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHT 692 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 AR F V +VT QR++ K++ L Y Sbjct: 693 LVAARVFGVPAERVTPQQRSVAKMVTYGLSY 723 >gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG] Length = 704 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 30/186 (16%) Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330 A+Q + +A+++ ++ L E +NS G++ +L GA +GR+S C P Q +P Sbjct: 403 AVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 460 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389 R R C V S +A K ++AD + IE R+ Sbjct: 461 RERR-------------------------FRACFVPSKTVAGRPGKFIIADFSQIELRIA 495 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A ++ ++A+ GEDL+ T + N P+ ++K R + K + L Y A F+ Sbjct: 496 ADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFR 555 Query: 450 KMASTT 455 AS+ Sbjct: 556 GYASSA 561 >gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118] gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118] Length = 957 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 45/90 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR +A G + AD + IE R++A ++G+ L AF G D++ T + F V AQ Sbjct: 718 VREAFVAPPGSVIASADYSQIELRIMAHISGDAALLLAFHDGIDVHRATASEIFGVDRAQ 777 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 VT +QR KV+ L Y A K S Sbjct: 778 VTSEQRRYAKVINFGLIYGMSAYGLAKALS 807 >gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 627 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 16/251 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380 P + SR H +QI T +SDP+ P++ +R +A GK L+ D Sbjct: 344 PLLVDENSRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSID 403 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELAL 439 + +E RVL M+ ++ ++A+ +DL+ T R FN++ + V+++QR I K++ ++ Sbjct: 404 YSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDTETVSREQRTIAKIINFSI 463 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G F +A + + + +K E++ +F R + E EH ++ Sbjct: 464 IY--GKTPFG-LAKELKIPVKDASEYIK--KYFEQYPKVTSFEREVIEFGEEHG----YV 514 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T R K+ S+ + ++ + T+ G A K+ V + + KDK ++ Sbjct: 515 KTLFGR-KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIT 573 Query: 560 LMLPSGRSLVY 570 L+L L++ Sbjct: 574 LLLQVHDELIF 584 >gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 911 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR I + K + D + IE RVLA M+ E + AF D+++ FN++ Q Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +T +QR I KV + Y G F +AS +++N ++K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNISVNQAKQMIK 761 >gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1] Length = 704 Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 30/186 (16%) Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330 A+Q + +A+++ ++ L E +NS G++ +L GA +GR+S C P Q +P Sbjct: 403 AVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 460 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389 R R C V S +A K ++AD + IE R+ Sbjct: 461 RERR-------------------------FRACFVPSKTVAGRPGKFIIADFSQIELRIA 495 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A ++ ++A+ GEDL+ T + N P+ ++K R + K + L Y A F+ Sbjct: 496 ADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFR 555 Query: 450 KMASTT 455 AS+ Sbjct: 556 GYASSA 561 >gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684] gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684] Length = 884 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q+ +++P+ P++ + +R+C +A G L+ AD + + Sbjct: 606 PEDHRLHTTFNQVTAATGRLSSTNPNLQNIPIRTPLGREIRACFVAEPGNVLISADYSQV 665 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA +AGE+ + F GED++ T A + P Q+ R+ K++ + Y G Sbjct: 666 ELRVLAHIAGEEVLKEIFRRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVY--G 723 Query: 445 AKAF 448 AF Sbjct: 724 LSAF 727 >gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] Length = 912 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 16/244 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387 SR H +QI T +SDP+ P++ +R +A GK L+ D + +E R Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELR 695 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446 VL M+ ++ ++A+ +DL+ T R FN++ ++ V+++QR I K++ ++ Y G Sbjct: 696 VLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 F +A + + + +K E++ +F R + E EH ++ T R Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPKVTSFEREVIEFGEEHG----YVKTLFGR- 805 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K+ S+ + ++ + T+ G A K+ V + + KDK + L+L Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQVHD 865 Query: 567 SLVY 570 L++ Sbjct: 866 ELIF 869 >gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27] gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27] Length = 912 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 16/244 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387 SR H +QI T +SDP+ P++ +R +A GK L+ D + +E R Sbjct: 636 SRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELR 695 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446 VL M+ ++ ++A+ +DL+ T R FN++ ++ V+++QR I K++ ++ Y G Sbjct: 696 VLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIY--GKT 753 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 F +A + + + +K E++ +F R + E EH ++ T R Sbjct: 754 PFG-LAKELKIPVKDASEYIK--KYFEQYPKVTSFEREVIEFGEEHG----YVKTLFGR- 805 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K+ S+ + ++ + T+ G A K+ V + + KDK + L+L Sbjct: 806 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQVHD 865 Query: 567 SLVY 570 L++ Sbjct: 866 ELIF 869 >gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666] gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666] Length = 944 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H Q + ++DP+ LQ I VR +A G + AD + Sbjct: 666 PRTGRVHTHYAQAVAVTGRLSSNDPN-LQNIPVKTAEGRRVREAFVAPAGSVIASADYSQ 724 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++ ++ L+AF G D++ T A F VA QV+ +QR KV+ L Y Sbjct: 725 IELRIMAHLSEDEALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIY 782 >gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 932 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++A N SDGR+ T + A+ TGR S QN+P Sbjct: 643 VQTLIDATNRSDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP------------------- 682 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 DP +I RS + EG + L+ +D + +E R++A ++G++ ++AF +G D Sbjct: 683 -NRDPAGREI-----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDF 736 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + V ++T DQR+ K M L Y Sbjct: 737 HKYVASLVYGVPVDEITPDQRSHVKAMSYGLAY 769 >gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus] Length = 574 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 36/198 (18%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T +VLSS + P + + +R + K + E + D RL + +GA T Sbjct: 266 STDDKVLSSYAHVEPVRLLL---EIRKLKKLSDKFKEIKENLKGD-RLYPEFKQIGAV-T 320 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+PR R+ A EG Sbjct: 321 GRMSSLKPNVQNVPREERA-------------------------------IFKAPEGNTF 349 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V+AD + IE R+ A E+ ++AF G+DL+ T + ++TK++R + K + Sbjct: 350 VIADFSQIELRIAAEYVNEELMIRAFREGKDLHRYTASLVLGKREEEITKEERQLAKAIN 409 Query: 437 LALGYQGGAKAFQKMAST 454 L Y AK + A T Sbjct: 410 FGLIYGISAKGLAEYART 427 >gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968] gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150] gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968] gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150] Length = 894 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P + P+ +R H +Q +T +S+P+ LQ I +R+ IA E ++ Sbjct: 609 LPKKINPKTNRVHTSYNQAVTATGRLSSSEPN-LQNIPIRSEEGRLIRTAFIAPEDNIIL 667 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ LKAF G D++ T + F + ++ +QR K + Sbjct: 668 AADYSQIELRIMAHLSQDENLLKAFANGWDVHAATASEIFQIPLEEINNEQRRRAKAINF 727 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT--NSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y G +F +A G+ + + T P+ E R Q+ H + +E Sbjct: 728 GLIY--GMSSF-GLAKQIGVERQDAQYYIDTYFQRYPKVL---EYMNRTRQQAHHQGYVE 781 Query: 496 DLF 498 LF Sbjct: 782 TLF 784 >gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4] gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4] Length = 918 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + +SDP+ LQ I +R +A G +V AD + Sbjct: 640 PTTGRVHTSYSQAVAVTGRLSSSDPN-LQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQ 698 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L AF GED++ T A F V V+ +QR KV+ L Y Sbjct: 699 IELRIMAHLSQDDGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIY-- 756 Query: 444 GAKAF 448 G AF Sbjct: 757 GMSAF 761 >gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] Length = 924 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 27/194 (13%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + L E +N + + T L A+ TGR + QN+P S ++ Sbjct: 632 DALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGKD------------- 678 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R IA +G L+ AD IE R+LA +A + KAF ED++ Sbjct: 679 ------------IRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDIHSL 726 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTN 469 T ++ FNV +V +D R K + + Y K + + + F A+ +K Sbjct: 727 TASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNAYFLKFP 786 Query: 470 SAPEEWEDAENFCR 483 ++ FCR Sbjct: 787 EIKIYMDNTIKFCR 800 >gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] Length = 986 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 10/131 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ P++ S +R + E KL+ AD + IE R Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLLSADYSQIELR 754 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +L ++GE+ +AF G+D++ T AR + +V++D+R +GK + + Y GA+ Sbjct: 755 ILTHLSGEEVLQEAFRNGDDVHALT-ARLL-LDKDEVSEDERRLGKTINFGVIYGMGAQR 812 Query: 448 FQKMASTTGLN 458 F + +TGL+ Sbjct: 813 FSR---STGLS 820 >gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 911 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR I + K + D + IE RVLA M+ E + AF D+++ FN++ Q Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +T +QR I KV + Y G F +AS +++N ++K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNISVNQAKQMIK 761 >gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688] gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688] Length = 918 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + +SDP+ LQ I +R +A G +V AD + Sbjct: 640 PTTGRVHTSYSQAVAVTGRLSSSDPN-LQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQ 698 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L AF GED++ T A F V V+ +QR KV+ L Y Sbjct: 699 IELRIMAHLSQDDGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIY-- 756 Query: 444 GAKAF 448 G AF Sbjct: 757 GMSAF 761 >gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152] gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152] Length = 910 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 41/273 (15%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLN-QIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + T+ + G VD L Q D K+ Q E+ YG++ L Sbjct: 507 LTDMELPLLGVLATLEEAGIAVDCEQLEALQRQFAD----KVAQAAEA-AYGVIGKQINL 561 Query: 237 ---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LK 290 ++L+ LF E + T+T + + L + F + A R A + Sbjct: 562 GSPKQLQVVLFDELDMPKTKRTKTGYTTDADALESLFEKTQHPFLEHLLAHRDATRLKVT 621 Query: 291 LNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++ L++++ DGR+ T Q + A TGR S QN+P Sbjct: 622 VDGLLKSVADDGRIHTTFNQTIAA--TGRLSSTEPNLQNIP------------------- 660 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 I +D +R + G +L+ AD + IE R++A ++G++ ++AF +GEDL Sbjct: 661 IRTD------TGRMIRDTFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNSGEDL 714 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + +++F++ A+V+ + R K M L Y Sbjct: 715 HSFVASKAFDIPIAEVSPELRRRIKAMSYGLAY 747 >gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469] gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469] Length = 880 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT ++DP+ I + +R IA EG L+ AD + IE R Sbjct: 605 GRIHGTFNQTITATGRISSTDPNLQNIPVRTELGRLLRKVFIAKEGYVLIDADYSQIELR 664 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA M+G++ + AF D++ T ++ F++ +VT QR K + + Y G A Sbjct: 665 VLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEVTPLQRRNAKAVNFGIVY--GISA 722 Query: 448 F 448 F Sbjct: 723 F 723 >gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1] gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1] Length = 943 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ V E L+ AD + IE R++A ++ E ++AF+ G D++ +T +R FNV +V Sbjct: 705 KAFVPRDENYVLLAADYSQIELRIIAALSKEDTMMQAFKDGADIHASTASRVFNVPLEEV 764 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 T++QR+ K + + Y G AF +++ T L + L+ T Sbjct: 765 TREQRSNAKTVNFGIIY--GVSAF-GLSNQTDLTRSESKELIDT 805 >gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii] Length = 2579 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 30/186 (16%) Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330 A+Q + +A+++ ++ L E +NS G++ +L GA +GR+S C P Q +P Sbjct: 2278 AVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 2335 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389 R R C V S +A K ++AD + IE R+ Sbjct: 2336 RERR-------------------------FRACFVPSKTVAGRPGKFIIADFSQIELRIA 2370 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A ++ ++A+ GEDL+ T + N P+ ++K R + K + L Y A F+ Sbjct: 2371 ADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFR 2430 Query: 450 KMASTT 455 AS+ Sbjct: 2431 GYASSA 2436 >gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155] gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155] Length = 921 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G+K++ AD + IE R++A ++ + LKAF G+D++ T A F + Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763 >gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] Length = 946 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 42/78 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +RS + G + AD A IE VLA + G++ +AF G+D++ T + FNV P Sbjct: 707 IRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREAFLAGQDVHRHTASLIFNVKPED 766 Query: 424 VTKDQRAIGKVMELALGY 441 VT DQR I K + + Y Sbjct: 767 VTPDQRRIAKTINFGVMY 784 >gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223] gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223] Length = 921 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G+K++ AD + IE R++A ++ + LKAF G+D++ T A F + Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763 >gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] Length = 924 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 27/194 (13%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + L E +N + + T L A+ TGR + QN+P S ++ Sbjct: 632 DALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGKD------------- 678 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R IA +G L+ AD IE R+LA +A + KAF ED++ Sbjct: 679 ------------IRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDIHSL 726 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTN 469 T ++ FNV +V +D R K + + Y K + + + F A+ +K Sbjct: 727 TASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNAYFLKFP 786 Query: 470 SAPEEWEDAENFCR 483 ++ FCR Sbjct: 787 EIKIYMDNTIKFCR 800 >gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 933 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG +LV D + IE RVLA ++ + +KAF G D++ T A F V A+ Sbjct: 694 IRRGFVAPEGMQLVTLDYSQIELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAE 753 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR + K + + Y G AF Sbjct: 754 VTSEQRRVAKAVNFGVIY--GQSAF 776 >gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195] gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195] gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678] Length = 921 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G+K++ AD + IE R++A ++ + LKAF G+D++ T A F + Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763 >gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] Length = 918 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 127/311 (40%), Gaps = 54/311 (17%) Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWY--------LDQTIND---RGYCVDVALAHT 206 G Y D +T + + L P KE EL L + ++D +G +D L Sbjct: 484 GPYAAEDADITLRLHQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSML--- 540 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTE----TTC 259 L+Q KLD +LE+ Y + L ++L+T F + G ++ T +T Sbjct: 541 LSQQSGELAKKLD-DLENKAYEIAEEKFNLASPKQLQTLFFEKLGYPIKKKTPKGAPSTA 599 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVL--KLNTLVEAMNSDGRLRGTLQFLGASRTG 317 + VL P + +R A + KL +V A + GR+ + A+ TG Sbjct: 600 EDVLIELALDYPLPKVILEHRSLAKLKSTYTDKLPLMVNA--TTGRVHTSYHQANAA-TG 656 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P R+ E +R IA G+K++ Sbjct: 657 RLSSSEPNLQNIP--IRTEE-----------------------GRRIRQAFIAPAGRKIL 691 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ + L AF G+D++ T A F V +VT +QR K + Sbjct: 692 AADYSQIELRIMAHLSQDAGLLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNF 751 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 752 GLIY--GMSAF 760 >gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] Length = 932 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G +++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDEGLLAAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] Length = 990 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H + +Q +T +S+P+ P++ S +R + EG L+ AD + I Sbjct: 696 PETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWSLISADYSQI 755 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+L + GE+ ++A+ G+D++ T AR + VT D+R +GK + + Y G Sbjct: 756 ELRILTHLCGEEVLVEAYRNGDDVHALT-ARLL-LDKEAVTPDERRLGKTINFGVIYGMG 813 Query: 445 AKAFQKMASTTGLN 458 A Q+ A TG++ Sbjct: 814 A---QRFARETGVS 824 >gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185] gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185] Length = 935 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G+K++ AD + IE R++A ++ + LKAF G+D++ T A F + Sbjct: 695 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 754 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 755 VTTEQRRRAKAVNFGLIY--GMSAF 777 >gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183] gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175] gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183] gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175] Length = 921 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G+K++ AD + IE R++A ++ + LKAF G+D++ T A F + Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763 >gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 911 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 16/244 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387 SR H +QI T +S+P+ P++ +R IA EGK L+ D + +E R Sbjct: 635 SRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELR 694 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446 VL M+ ++ ++A+ +DL+ T R FN+ ++ V+++QR I K++ ++ Y G Sbjct: 695 VLTSMSKDENLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIY--GKT 752 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 F +A + + + +K E++ F + + E EH ++ T R Sbjct: 753 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTTFEKEVIEFGEEHG----YVKTLFGR- 804 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K+ S+ + ++ + T+ G A K+ V + + KDK ++ L+L Sbjct: 805 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHD 864 Query: 567 SLVY 570 L++ Sbjct: 865 ELIF 868 >gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] Length = 829 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 26/157 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + DGR+ T + +RTGR S QN+P + E+ + T Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRTPLGREMRRFFT--------- 595 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 A +G LV AD + IE RVLA ++G++ KAF G D++ T Sbjct: 596 ----------------AKDGCLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTA 639 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ FN VT D R+ K + + Y GA + K Sbjct: 640 SQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSK 676 >gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z] gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z] Length = 956 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q +T ++DP+ LQ I +R +A +G +++ Sbjct: 674 PQMINPHTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVARDGYRIIA 732 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ AF G D++ +T + F + V+ +QR K + Sbjct: 733 ADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQRRSAKAINFG 792 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 793 LIY--GMSAF 800 >gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478] Length = 900 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 32/210 (15%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNT 293 ++L+ LF E G+ T+T + + L + F + A R + ++ Sbjct: 555 KQLQVVLFDELGMPKTKRTKTGYTTDADAVQGLFEKTGHPFLQHLLAHRDVTRLKVTVDG 614 Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L+ ++ +DGR+ T Q + A TGR S QN+P I + Sbjct: 615 LLNSVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIP-------------------IRT 653 Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 D +R + G +L+ AD + IE R++A ++G++ ++AF TGEDL+ Sbjct: 654 DA------GRQIRDAFVVGAGYSELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSF 707 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R+F V +VT + R K M L Y Sbjct: 708 VASRAFGVPIDEVTGELRRRVKAMSYGLAY 737 >gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3] gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3] Length = 932 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T ++DP+ LQ I +R +A G K++ D + IE Sbjct: 656 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIEL 714 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++G++ L+AF+ G+D++ T A V VT +QR K + L Y G Sbjct: 715 RIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNFGLIY--GMS 772 Query: 447 AFQKMASTTGLNLNTFAHLVKT 468 AF +A G+ H + T Sbjct: 773 AF-GLAKQLGIPRGEAQHYMDT 793 >gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580] gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580] Length = 951 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A++G KL+ AD A IE +LA + ++ +KAF G D++ T A FNV Sbjct: 712 IRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAFRQGTDVHAATAALIFNVPVEN 771 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449 V D R I KV+ + Y G AF+ Sbjct: 772 VVPDMRRIAKVINFGVMY--GMSAFR 795 >gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 899 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 31/158 (19%) Query: 289 LKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 +KL VE + +DGR+ T Q A+ TGR S QN+P +R+ E + Sbjct: 605 IKLRQTVEGLRKAVLADGRIHTTFQQTVAA-TGRLSSTDPNLQNIP--ARTEEGMR---- 657 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R +G++ L+ AD + IE R++A ++G+Q + AF Sbjct: 658 -------------------IREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFR 698 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +GEDL+ A + A VT +QR+ K M L Y Sbjct: 699 SGEDLHRYVAAMVHGIDVADVTAEQRSHVKAMSYGLAY 736 >gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 911 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 16/244 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVADLAGIEAR 387 SR H +QI T +S+P+ P++ +R IA EGK L+ D + +E R Sbjct: 635 SRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELR 694 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446 VL M+ ++ ++A+ +DL+ T R FN+ ++ V+++QR I K++ ++ Y G Sbjct: 695 VLTSMSKDENLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIY--GKT 752 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 F +A + + + +K E++ F + + E EH ++ T R Sbjct: 753 PFG-LAKELKIPVKDASEYIK--KYFEQYPRVTTFEKEVIEFGEEHG----YVKTLFGR- 804 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K+ S+ + ++ + T+ G A K+ V + + KDK ++ L+L Sbjct: 805 KRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHD 864 Query: 567 SLVY 570 L++ Sbjct: 865 ELIF 868 >gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8] gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8] Length = 942 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 9/122 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H +Q + +SDP+ LQ I +R IA G +V AD + IE Sbjct: 667 GRVHTNYNQAVAITGRLASSDPN-LQNIPVRTAEGRRIREAFIAPPGSHIVSADYSQIEL 725 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++ + L+AF ED++ T A F V + V +QR KV+ L Y G Sbjct: 726 RIMAHLSKDAGMLQAFANNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIY--GMS 783 Query: 447 AF 448 AF Sbjct: 784 AF 785 >gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107] gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107] Length = 998 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 12/132 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I S +R + EG L+ AD + IE Sbjct: 707 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIEL 765 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ TG+D++ T AR + +V+ DQR +GK + + Y GA Sbjct: 766 RILTHLSGEEVLQEAYRTGDDVHALT-ARLL-LDKDEVSADQRRLGKTINFGVIYGMGA- 822 Query: 447 AFQKMASTTGLN 458 Q+ A TG++ Sbjct: 823 --QRFARETGVS 832 >gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14] gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14] Length = 923 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T +SDP+ LQ I Sbjct: 622 LEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEG 680 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G++ L AF G+D++ T A ++ Sbjct: 681 RRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDI 740 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 +V+ +QR K + L Y G AF Sbjct: 741 EEVSSEQRRRAKAINFGLIY--GMSAF 765 >gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] Length = 896 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L++L E +N GR+ + G TGR S QNLP +E Sbjct: 611 LDSLPELVNKVTGRIHTSYHQTGTG-TGRLSSSNPNMQNLPIRDEEGKE----------- 658 Query: 350 ITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R CVI + G K+V AD + IE R+LA ++ ++ L AF+ +D+ Sbjct: 659 --------------IRKCVIPQKKGWKIVSADYSQIELRILAHLSQDKQLLDAFKNDKDV 704 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + T + + + ++V+++QR IGK++ ++ Y Sbjct: 705 HSLTASNLYGIKESEVSEEQRRIGKMINFSIIY 737 >gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] Length = 848 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 C+ A G V AD + IE RVLA ++GE+ + FE G D++ T A + VTK Sbjct: 615 CLTAGPGGVFVAADYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMILGIPADSVTK 674 Query: 427 DQRAIGKVMELALGYQGGAKAF 448 +QR + K + L Y G AF Sbjct: 675 EQRRMAKTVTFGLLY--GMSAF 694 >gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802] gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802] Length = 972 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 16/181 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q +T +S+P+ I S +R I E LV AD + I Sbjct: 680 PDTQRVHTNFNQTVTATGRLSSSNPNLQNIPIRTEFSRKIRQAFIPQENWLLVSADYSQI 739 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E L+A+ +D++ T F+ +T +R +GK + + Y G Sbjct: 740 ELRILAHLSQEVVLLEAYRNNQDVHSVTAKLLFD--KETITPQERNLGKTINFGVIYGMG 797 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A+ F + A + TF N + + ++ M+ + AI D F+ T Sbjct: 798 AQRFAREAGVSAAEGKTF-----INKYRQRYAKVFDYLERMK----KEAIADGFVTTILG 848 Query: 505 R 505 R Sbjct: 849 R 849 >gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328] gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328] Length = 945 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 10/131 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q IT +S P+ I S +R I G LV AD + IE R+ Sbjct: 671 RIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRI 730 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ E+ ++A+ T +D++ T F+ ++T D+R +GK++ + Y G++ F Sbjct: 731 LAHLSQEKMLIEAYNTNQDVHSLTAQLLFD--KDEITADERRLGKIINFGVIYGMGSQRF 788 Query: 449 QK---MASTTG 456 + +++T G Sbjct: 789 AREVGVSATAG 799 >gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] Length = 931 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 10/133 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ P++ S +R I EG L AD + IE R Sbjct: 660 GRVHTDFNQTVTATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQEGWLLTAADYSQIELR 719 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++ E L+ F +GED++ T AR + ++T ++R + K + + Y GA Sbjct: 720 ILAHLSQEPALLEGFRSGEDVHTLT-ARLL-LEKQEITSEERRLAKTINYGVIYGMGA-- 775 Query: 448 FQKMASTTGLNLN 460 Q+ A T G++L+ Sbjct: 776 -QRFARTAGVSLS 787 >gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] Length = 891 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H +Q + +++P+ LQ I VR I++ G KL+ AD + Sbjct: 614 PKDGRVHTTFEQAVAVTGRLSSTNPN-LQNIPIRTEEGRKVREAFISASGCKLISADYSQ 672 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++ ++ ++AF+ ED++ T A F +VT + R I KV+ L Y Sbjct: 673 IELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMY 730 >gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] Length = 857 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 26/157 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 +++ + DGR+ +RTGR S QN+P + EL Sbjct: 573 MLKVIGPDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRTELGREL-------------- 617 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 R +A EG LV AD + IE RVLA +A ++ +KAF+ ED++ T Sbjct: 618 -----------RKFFLAKEGWVLVDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITA 666 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ F + P VT R+ K + + Y GA + K Sbjct: 667 SQVFGMPPEMVTPLMRSRAKAVNFGIVYGIGAFSLSK 703 >gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231] gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002] Length = 886 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++A+ SDGR+ T AS TGR S QN+P ++ Sbjct: 598 LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTQDGRR------------ 644 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 645 -------------IRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLH 691 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F V QVT + R K M L Y G AF Sbjct: 692 NYVGSRVFEVPVDQVTPELRRRVKAMSYGLVY--GLSAF 728 >gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] Length = 923 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ LQ I +R IA +G K++ D + Sbjct: 644 PATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPQGYKVLAIDYSQ 702 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ L AF G+D++ T A + QV+ +QR K + L Y Sbjct: 703 IELRIMAHLSGDKALLDAFCHGKDIHAATAAEILGLPLDQVSSEQRRRAKAINFGLIY-- 760 Query: 444 GAKAF 448 G AF Sbjct: 761 GMSAF 765 >gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6] Length = 861 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 31/169 (18%) Query: 287 AVLKLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A KLN+ L++ + DGR+ A RTGR S QN+P Sbjct: 566 AYQKLNSTYVEGLLKVIAEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIP----------- 613 Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 I T L + + R+ +A G LV AD + IE R+LA + G++ +A Sbjct: 614 IRTELGSQL--------------RAYFVARPGCVLVDADYSQIELRILAHVTGDEHMQQA 659 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 F TGED++ +T A+ + + QVT R+ K + + Y GA + K Sbjct: 660 FLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAINFGIMYGKGAYSLSK 708 >gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046] gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046] Length = 921 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T ++DP+ I I +R IA +G+ L+ AD + IE R+ Sbjct: 649 RVHTSYHQALTATGRLSSTDPNLQNIPVREEIGRQIRKAFIAPQGRVLLAADYSQIELRL 708 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + ++ + AF+ G+D++ T A VA VT DQR K + L Y Sbjct: 709 MAHFSQDEALVDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQAKAVNFGLLY 761 >gi|227489383|ref|ZP_03919699.1| hypothetical protein HMPREF0294_2533 [Corynebacterium glucuronolyticum ATCC 51867] gi|227090561|gb|EEI25873.1| hypothetical protein HMPREF0294_2533 [Corynebacterium glucuronolyticum ATCC 51867] Length = 60 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 26/47 (55%), Positives = 32/47 (68%) Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + R TYGGKL ENIVQAV+RD+L M +AG+ IV+ V DE V Sbjct: 2 IPRLETYGGKLVENIVQAVARDLLVRAMTLVAQAGHKIVMHVRDEPV 48 >gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] Length = 950 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H +Q + +++P+ LQ I VR I++ G KL+ AD + Sbjct: 673 PKDGRVHTTFEQAVAVTGRLSSTNPN-LQNIPIRTEEGRKVREAFISASGCKLISADYSQ 731 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++ ++ ++AF+ ED++ T A F +VT + R I KV+ L Y Sbjct: 732 IELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMY 789 >gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] Length = 932 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G +++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] Length = 875 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 26/160 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ +V+ + DG++ T Q ++TGR S QN+P R+ E Sbjct: 589 IDGMVDLIKKDGKIHTTFQ-QTIAQTGRISSTNPNLQNIP--IRTEE------------- 632 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + S G L+ AD + IE RVLA +A ++ + AF+ G D++ Sbjct: 633 ----------GRLIRKAFVPSGGNVLLDADYSQIELRVLADLANDEVMIDAFKHGADIHR 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 T + F V +VT QR+ K + + Y G + K Sbjct: 683 KTASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIGDYSLSK 722 >gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152] gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152] Length = 945 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 3/104 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ V E L+ AD + IE R++A ++ E+ + AF+ GED++ +T A+ F V V Sbjct: 707 KAFVPKDENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDIHASTAAKVFGVDINDV 766 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 T++QR+ K + + Y G AF +++ T L+ L+ T Sbjct: 767 TREQRSNAKTVNFGIVY--GVSAF-GLSNQTDLSRGEAKELIDT 807 >gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3] gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3] Length = 922 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G+K++ AD + IE R++A ++ + LKAF G+D++ T A F Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 742 VTSEQRRRAKAVNFGLIY--GMSAF 764 >gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061] gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 10/130 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P +R H Q +T + DP+ LQ I +R IA G +++ Sbjct: 647 PQMVNPLTNRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPTGYRIMA 705 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++ ++ L AF G+D++ T A F V VT +QR K + Sbjct: 706 ADYSQIELRIMAHLSQDKGLLAAFAQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFG 765 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 766 LIY--GMSAF 773 >gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963] Length = 915 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 101/460 (21%), Positives = 166/460 (36%), Gaps = 128/460 (27%) Query: 192 INDRGYCVDVALAHTL-----NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 I G VD A H L +Q+ D + + + + G ++L+ LF E Sbjct: 526 IEATGIVVDSAHLHDLQSRFASQVADAANSAYEVIDKQINLG------SPKQLQVVLFEE 579 Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGR 303 + T+T + + L + F + A R A + ++ L++A+ DGR Sbjct: 580 LDMPKTKKTKTGYSTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVTVDGLLKAVAEDGR 639 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + T A+ TGR S QN+P + + E Sbjct: 640 IHTTFNQTVAA-TGRLSSTDPNLQNIPVRNDAGRE------------------------- 673 Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + +G L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V Sbjct: 674 IRDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIE 733 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT + R K M L Y GL+ A +K ++ Sbjct: 734 EVTPELRRRVKAMSYGLAY--------------GLSAYGLASQLKIST------------ 767 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIAR 541 E K+ +R + + LH EQ ++G + + Sbjct: 768 ---------------------EEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLYG 806 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 +RR +P LN+ RQ RE L I Sbjct: 807 RRRYLP-------------------------------DLNSDNRQ-RREVAERAALNAPI 834 Query: 602 VQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635 Q + DI+ M+N KA D ++L VHDE+V E Sbjct: 835 -QGTAADIIKVAMINVQKALADAGLKSRMLLQVHDELVLE 873 >gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301] gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301] Length = 928 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 9/122 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H +Q + +SDP+ LQ I +R IA +G +V AD + IE Sbjct: 653 GRVHTSYNQAVAITGRLASSDPN-LQNIPVRSAEGRRIREAFIAPKGSHIVSADYSQIEL 711 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++ ++ L AF ED++ T A F V V +QR KV+ L Y G Sbjct: 712 RIMAHLSKDEGMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIY--GMS 769 Query: 447 AF 448 AF Sbjct: 770 AF 771 >gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8] gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth polymerase 1 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8] Length = 834 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R +A G LV D + I Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G+D++ T + F V P V R K + + Y Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673 >gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium pseudotuberculosis I19] Length = 886 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++A+ SDGR+ T AS TGR S QN+P ++ Sbjct: 598 LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTQDGRR------------ 644 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 645 -------------IRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLH 691 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F V QVT + R K M L Y G AF Sbjct: 692 NYVGSRVFEVPVDQVTPELRRRVKAMSYGLVY--GLSAF 728 >gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164] gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164] Length = 919 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I I +R IA G+ L+ AD + IE R+ Sbjct: 647 RVHTSYHQALTATGRLSSSDPNLQNIPIRGEIGRQIRKAFIAPAGRVLLAADYSQIELRL 706 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + L AF G+D++ T A +A VT DQR K + L Y Sbjct: 707 MAHFSQDDALLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLY 759 >gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus] Length = 834 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R +A G LV D + I Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G+D++ T + F V P V R K + + Y Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673 >gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] Length = 954 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ H +Q +T +S+P+ LQ I +R I EG + AD + Sbjct: 676 PKTGHIHTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRRAFIPDEGCEFFSADYSQ 734 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF+ G+D++ T A+ + VT++QR+ K + Y Sbjct: 735 IELRIMAHLSGDPHMIEAFQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIY 792 >gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 934 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R +A G+KL+ D + Sbjct: 656 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQ 714 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ + AFE+G D++ T A F V+ D+R K + L Y Sbjct: 715 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMY-- 772 Query: 444 GAKAF 448 G AF Sbjct: 773 GMSAF 777 >gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1] Length = 962 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 74/320 (23%), Positives = 119/320 (37%), Gaps = 77/320 (24%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV----- 213 EY D +T ++ PL KEQ V+ A N +V V Sbjct: 527 EYAAEDADITLQLKNVFLPLIKKEQ---------------VEKVFAEVENPLVKVLTNME 571 Query: 214 -ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 E ++D++ Y +V +E + ++ + G+ + VL KL P+ Sbjct: 572 FEGIRIDEQFLK-DYSIVLQKDAME-FEQSVYEQAGVKFNLASPKQLGEVLFDKMKLDPK 629 Query: 273 AIQVFNNRMRASRSAVLKL--------------------NTLVEAM-----NSDGRLRGT 307 A + + + KL NT V+A+ + GR+ T Sbjct: 630 AKKTKTGQYATGEDVLAKLANQHKICNDILSFRELTKLKNTYVDALPQLINSKTGRVH-T 688 Query: 308 LQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366 + TGR S QN+P R R E +R Sbjct: 689 SYAQAVAVTGRLSSTNPNLQNIPVRTERGRE--------------------------IRK 722 Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 I E LV AD + IE R++A ++ + +AF+TG+D++ T A+ FNV ++VT Sbjct: 723 AFIPRDENHVLVSADYSQIELRIVAAISADVNMCEAFKTGKDIHTATAAKVFNVEESEVT 782 Query: 426 KDQRAIGKVMELALGYQGGA 445 K+ R K + + Y GA Sbjct: 783 KEMRYKAKSVNFGIIYGQGA 802 >gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7] gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7] Length = 922 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G+K++ AD + IE R++A ++ + LKAF G+D++ T A F Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 742 VTSEQRRRAKAVNFGLIY--GMSAF 764 >gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] Length = 912 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G ++ AD + IE R++A ++G+ + AF G+D++ T A F V Q Sbjct: 673 IREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLIHAFSEGQDIHRATAAEVFGVPVEQ 732 Query: 424 VTKDQRAIGKVMELALGY 441 V +QR KV+ L Y Sbjct: 733 VNPEQRRYAKVINFGLIY 750 >gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 933 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 28/215 (13%) Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300 +R+L++ +K T A + FN +++A LKL +V EA+ Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIAD 624 Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L R L++ G ++ P P+ R H Q +SDP+ LQ Sbjct: 625 QHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683 Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R +A G+KL+ D + IE R++A ++G+ + AFE+G D++ T Sbjct: 684 IPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATA 743 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A F V+ D+R K + L Y G AF Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776 >gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27] gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27] Length = 834 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R +A G LV D + I Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G+D++ T + F V P V R K + + Y Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673 >gi|1097211|prf||2113329A DNA polymerase Length = 834 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R +A G LV D + I Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G+D++ T + F V P V R K + + Y Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673 >gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus] gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB] Length = 834 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R +A G LV D + I Sbjct: 557 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G+D++ T + F V P V R K + + Y Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673 >gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469] gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469] Length = 912 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H L+Q +T +SDP+ I + VR+ EG + D + IE R+ Sbjct: 638 RIHTTLNQTVTATGRLSSSDPNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRL 697 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ ++ + AF +G D + T AR F V +VT R+ K + + Y G +AF Sbjct: 698 LAHLSADEHLVAAFNSGADFHAATAARVFGVPVEEVTPALRSRAKAVNFGIVY--GQQAF 755 >gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 934 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R +A G+KL+ D + Sbjct: 656 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQ 714 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ + AFE+G D++ T A F V+ D+R K + L Y Sbjct: 715 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMY-- 772 Query: 444 GAKAF 448 G AF Sbjct: 773 GMSAF 777 >gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236] gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236] Length = 932 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G +++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4] gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4] Length = 922 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G+K++ AD + IE R++A ++ + LKAF G+D++ T A F Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 742 VTSEQRRRAKAVNFGLIY--GMSAF 764 >gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] Length = 882 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T + TGR S QN+P + + + Sbjct: 596 LEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEAGRQ------------ 642 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS I EG ++L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 643 -------------IRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDLH 689 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F+V QVT + R K M L Y G AF Sbjct: 690 NFVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 726 >gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] Length = 904 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 30/166 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++A+ DGR+ T + + TGR S QN+P R+ E Sbjct: 619 LIKAIGPDGRIHTTFR-QDVAATGRLSSTDPNLQNIP--VRTDE---------------- 659 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 + +R + EG + L+ AD + IE R++A ++G+ ++AF TGEDL+ Sbjct: 660 -------ARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDDGLIEAFRTGEDLHNFV 712 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +R+F V +V + R K M L Y G AF +AS G++ Sbjct: 713 ASRAFGVPIDEVGAELRRRVKAMSYGLAY--GLSAF-GLASQLGVS 755 >gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium] Length = 898 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382 P + H +Q +T +++P+ LQ I + ++ + +SE V AD + Sbjct: 619 PVTGKIHSSFNQTVTATGRISSTEPN-LQNIPVRHEMGREIRKAFIPSSENAVFVDADYS 677 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA + G++ + AF GED++ T + F+VAP VT + R K + + Y Sbjct: 678 QIELRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELRRKAKAVNFGIVY 736 >gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10] gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10] Length = 896 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 45/332 (13%) Query: 140 ECLYDRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPL--SSKEQELWY-----LDQT 191 E LYD++ + + E C V + ++L P+ + + EL+Y L + Sbjct: 446 EILYDKHGKRLEQGQDVSSSEVCAAAVNAIYGLTQKLRPIIRDNGQDELYYKIELPLVEV 505 Query: 192 IND---RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + + RG+ VDV ++ +D L+ E+ + G + ++L LF + G Sbjct: 506 LANMELRGFKVDVENLKAYSKELDSRLVILENEI-YMQAGETFNINSPKQLGVILFEKLG 564 Query: 249 LHLEDLTET---TCQRVLS--SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L + T+T T VL S K + I + M+ + + L+ + DG+ Sbjct: 565 LPVGKKTKTGYSTSAEVLEQLSYKHEIVERILEYRQLMKLKSTYA---DGLLSVLEQDGK 621 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + + TGR S QN+P ++ ++ +PT+ SD Sbjct: 622 IHSNFN-QTVTATGRISSTEPNLQNIPVKLEMGRKIRKVF--IPTN-----------SDY 667 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 V L+ AD + IE RVLA + G+ ++AF ED++ TT ++ F + P + Sbjct: 668 V-----------LLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVFGIPPEE 716 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 V+ R+ K + + Y G + K T Sbjct: 717 VSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVT 748 >gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] Length = 885 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 8/125 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383 P+ + + +Q +T +SDP+ I + +R + S G +++V AD + Sbjct: 606 PKTHKIYSTFNQTVTATGRLSSSDPNLQNIPVKTEMGREIRKVFVPSAGDRVLVDADYSQ 665 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA ++G++ + F +D++ T + FNV V+++QR+ K + L Y Sbjct: 666 IELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFNVPMDAVSREQRSHAKAINFGLIY-- 723 Query: 444 GAKAF 448 G +AF Sbjct: 724 GKQAF 728 >gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13] gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13] Length = 901 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 3/103 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR IA+ ++V D + IE R++A ++ + L AF ED++ +T + FN A Sbjct: 662 VREAFIANTDSQIVSCDYSQIELRIMAHLSKDPGLLDAFNQNEDIHRSTASAIFNTNDAS 721 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 V+ +QR KV+ L Y G AF ++ T ++ N+ + + Sbjct: 722 VSSEQRRFAKVINFGLIY--GMSAF-GLSQTLNIDRNSAKNFI 761 >gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] Length = 926 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R +A G+KL+ D + Sbjct: 648 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQ 706 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ + AFE+G D++ T A F V+ D+R K + L Y Sbjct: 707 IELRIMAHLSGDPGLVSAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 764 Query: 444 GAKAF 448 G AF Sbjct: 765 GMSAF 769 >gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896] Length = 872 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q +T + +P+ I + +R +A EG LV AD + I Sbjct: 594 PTSKRIHSTFNQTLTTTGRISSLEPNLQNIPVRTEMGRELRKVFVAKEGYVLVDADYSQI 653 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA MA E+ ++ F D++ T + F+V +VTK+ R+ K + + Y Sbjct: 654 ELRVLAHMAQEKKMIEGFHGSMDIHTKTASEVFSVPVEEVTKELRSAAKAVNFGIVY 710 >gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] Length = 885 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 27/158 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++A+ DGR+ T Q S TGR S QN+P + + +++ T Sbjct: 597 LEGLIKAVGDDGRIHTTFQQTMTS-TGRLSSTDPNLQNIPIRTPAGKKIRSAFT------ 649 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + + + L+ AD + IE RV+A ++ + + A+ GEDL+ Sbjct: 650 ------------------VGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNGEDLHN 691 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A+ F+V P+ VT + R KV L+ G G AF Sbjct: 692 YVGAKVFDVPPSGVTPELRR--KVKALSYGLVYGLSAF 727 >gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] Length = 882 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T S TGR S QN+P + + + Sbjct: 596 LEGLIKTVQPDGRIHTTFNQTVTS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 642 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS I EG ++L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 643 -------------IRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDLH 689 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F+V QVT + R K M L Y G AF Sbjct: 690 NFVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 726 >gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] Length = 845 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380 P+ + R H +Q+ T +S+P+ I +R+C S+GK LV AD Sbjct: 562 PRKVDVGGRLHTTFNQLATATGRLSSSNPNLQNIPIKGEFGPRMRACFKPSKGKLLVAAD 621 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA M+ + L+AF ED++ T F+ +V++D+R K + L Sbjct: 622 YSQIELRILAHMSMDPNLLQAFGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTINFGLL 681 Query: 441 YQGGAKAFQKMASTT 455 Y G + + S + Sbjct: 682 YGMGPQKLSRELSIS 696 >gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32] gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32] Length = 933 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T ++DP+ LQ I +R +A G K++ D + IE Sbjct: 657 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIEL 715 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++G++ L+AF+ G+D++ T A V VT +QR K + L Y G Sbjct: 716 RIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIY--GMS 773 Query: 447 AFQKMASTTGLNLNTFAHLVKT 468 AF +A G+ H + T Sbjct: 774 AF-GLAKQLGIPRGEAQHYMDT 794 >gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118] gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118] Length = 933 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R +A G+KL+ D + Sbjct: 655 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ + AFE+G D++ T A F V+ D+R K + L Y Sbjct: 714 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] Length = 907 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 116/287 (40%), Gaps = 68/287 (23%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLKL 291 ++L LF E GL + T+T T Q VL +KL QA I + N + ++ + Sbjct: 564 KQLGVILFEEMGLPVIKKTKTGYSTAQDVL---EKLAGQAPIIDLILNYRQLNKLQSTYV 620 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L E ++ DG++ Q S TGR S QN+P RS E Sbjct: 621 EGLQEFIHEDGKIHSRFQQTLTS-TGRLSSADPNLQNIP--IRSEE-------------- 663 Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + S E + +D + IE RVLA ++G++ +AF ED++ Sbjct: 664 ---------GRSIRKAFVPSHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHT 714 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL--NLNTFAHLVKT 468 +T + +NV +VT + R K + + Y S GL NLN Sbjct: 715 STAMKVYNVPKEEVTSNMRRNAKAVNFGIVYG---------ISDYGLSQNLNI------- 758 Query: 469 NSAPEEWEDAENFCRWMQENHP----------EHAIEDLFIGTACER 505 S PE A+NF EN+P E A ED ++ T R Sbjct: 759 -SRPE----AKNFIDTYLENYPGVQAYMKDVVEKAKEDGYVETLFNR 800 >gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] Length = 934 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R +A G+KL+ D + Sbjct: 656 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQ 714 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ + AFE+G D++ T A F V+ D+R K + L Y Sbjct: 715 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMY-- 772 Query: 444 GAKAF 448 G AF Sbjct: 773 GMSAF 777 >gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222] gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222] Length = 933 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T ++DP+ LQ I +R +A G K++ D + IE Sbjct: 657 GRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIEL 715 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++G++ L+AF+ G+D++ T A V VT +QR K + L Y G Sbjct: 716 RIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIY--GMS 773 Query: 447 AFQKMASTTGLNLNTFAHLVKT 468 AF +A G+ H + T Sbjct: 774 AF-GLAKQLGIPRGEAQHYMDT 794 >gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] Length = 901 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 25/148 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++++ DGR+ T Q A+ TGR S QN+P + + + Sbjct: 616 LLKSVADDGRIHTTFQQTIAA-TGRLSSTEPNLQNIPIRTEAGRRIR------------- 661 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 R+ V+ + L+ AD + IE R++A ++G++ ++AF TGEDL+ Sbjct: 662 -----------RAFVVGDGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVG 710 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R F V + VT R+ K M L Y Sbjct: 711 SRVFQVETSAVTPAMRSKIKAMSYGLAY 738 >gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] Length = 940 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 10/135 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H +Q T +SDP+ LQ I +R IA +G LV AD + I Sbjct: 662 RTGRIHTSFNQAGTTTGRLSSSDPN-LQNIPARTHEGKLIRKAFIAPQGYTLVSADYSQI 720 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +A + +KAF+ G D++ T A +VT ++R+ K L Y G Sbjct: 721 ELRLIAHIAKDPNLIKAFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLMYGMG 780 Query: 445 AKAFQKMASTTGLNL 459 A +++ TGL+ Sbjct: 781 AHG---LSAQTGLSF 792 >gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2] gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2] Length = 940 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 9/122 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q +T +S+P+ LQ I +R +A G KL+ AD + IE Sbjct: 666 GRVHSAFHQAVTATGRLSSSNPN-LQNIPIRSEEGRRIRQAFVADPGCKLISADYSQIEL 724 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++ ++ AF GED++ T A F V +V+ +QR K + L Y G Sbjct: 725 RIMAHLSEDERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINFGLIY--GMS 782 Query: 447 AF 448 AF Sbjct: 783 AF 784 >gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2] gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2] Length = 604 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%) Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 IT +P D L VR C +A EG+ + D E RVLA ++G++ ++AF Sbjct: 360 ITGIPAQTLPSGDWL------VRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAF 413 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + G DL++ T ++ ++TKD +R K + Y GGAK +A TGL++ Sbjct: 414 KDGADLHLMTARAAW--PDREITKDSPERKYAKTVNFGRVYGGGAKT---VAEQTGLDME 468 Query: 461 TFAHLV 466 +V Sbjct: 469 AAKQVV 474 >gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583] gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583] Length = 968 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 8/150 (5%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVV 378 P P+ R H T +S+P+ P++ I +R+ IASEG L+ Sbjct: 680 LPSYISPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLS 739 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA +A +AF G+D++ T ++ F VA +++ D R K + Sbjct: 740 ADYSQIELRLLAHIADITALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFG 799 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + Y G AF +A+ G++ +H ++ Sbjct: 800 IIY--GISAF-GLANQLGISREEASHYIRV 826 >gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511] gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511] Length = 904 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 109/454 (24%), Positives = 177/454 (38%), Gaps = 73/454 (16%) Query: 30 VILFAFGFDDHPVELWDCVHD--PVMPQV----LKEALEN-TDVTIVAHNSYFERTVLKA 82 ++ F+F F++ H V PQV K+A+E IV N F+ ++L + Sbjct: 352 MVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEAAKKAIEKLMRHRIVGQNLKFDLSLLYS 411 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++ PI T++LA S + A K +M+ KE + KGE + Sbjct: 412 HLEME-PIEPEADTMILAWLLDPGSRVGLDILAQKFLGYQMKSFKETVK---KGEDFSSV 467 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-----------SSKEQELWYLDQT 191 A Y D TR+++ RL L +KE E +++ Sbjct: 468 ----------ALEEAAFYAAEDAWATRQLYFRLTELFKKGGLEHLLKEAKEVEFPFINVL 517 Query: 192 I--NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 I G VD +L + + E +L QE+ +L G + + ++L LF GL Sbjct: 518 IAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLA-GTEFNIKSTQQLGNVLFGTLGL 576 Query: 250 HLEDLTET---TCQRVLSSNKKLTP--QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 T+T T + VL + P + I + + + V L L E + +GR+ Sbjct: 577 KGGKKTKTGYSTNESVLRNLIGEHPIVEKILEYREHQKMLSTYVDPLLKLAEK-DPEGRI 635 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364 T G + TGR + QN+P S + V Sbjct: 636 HTTFVQTGTA-TGRLASKDPNLQNIPVRSE-------------------------LGRRV 669 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R +A EG +L D + IE R+LA +G+ +AFE GED+++ T + F A Sbjct: 670 RRAFVAQEGFRLASIDYSQIELRLLAHFSGDAALREAFEKGEDIHMATAIKLFGPEEAAA 729 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +R K + L Y G++ K+A G+ Sbjct: 730 ---KRNFAKSINFGLLYGMGSR---KLADELGIT 757 >gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015] gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015] Length = 900 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G K++ AD + IE R++A ++G++ ++AF+ G D++ T + F V + Sbjct: 661 IREAFVAEPGHKILAADYSQIELRIMAHLSGDETLIRAFKEGRDIHQATASEVFGVPLDE 720 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V +QR K + L Y G AF +A G++ Sbjct: 721 VESEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIS 752 >gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36] gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36] Length = 931 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T +SDP+ LQ I +R I G K V D + I Sbjct: 653 KTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRAGEGRRIRQAFIPETGYKYVAVDYSQI 711 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ L AF G+D++ T A F+V VT DQR K + L Y G Sbjct: 712 ELRIMAHLSQDKGLLTAFSEGKDIHRATAAEVFSVELDDVTSDQRRSAKAINFGLIY--G 769 Query: 445 AKAF 448 AF Sbjct: 770 MSAF 773 >gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] Length = 971 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T +S+P+ LQ I +R I +G + AD + IE R++ Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A ++G+ ++AF+ G+D++ T A+ + ++ +VT++QR+ K + Y Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809 >gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4] gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4] Length = 971 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T +S+P+ LQ I +R I +G + AD + IE R++ Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A ++G+ ++AF+ G+D++ T A+ + ++ +VT++QR+ K + Y Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809 >gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463] Length = 650 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 36/246 (14%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A TL Q+ + KL +ELE YG L ++L LF + GL + T+T Sbjct: 271 ASTLIQLQNEFAVKL-KELEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 329 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + + L++ + DGR+ LQ L A T Sbjct: 330 TAVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 386 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P +R+ EE QI + S+PD + SC Sbjct: 387 GRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VPSEPDG------YIFSC--------- 425 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435 D + +E RVLA ++G+Q +AF+TG D++ T + F++ +P +VT R K + Sbjct: 426 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAV 482 Query: 436 ELALGY 441 + Y Sbjct: 483 NFGIVY 488 >gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 933 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R +A G+KL+ D + Sbjct: 655 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ + AFE+G D++ T A F V+ D+R K + L Y Sbjct: 714 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942] gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942] Length = 953 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 7/128 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ P++ S +R + EG L AD + IE R Sbjct: 664 GRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADYSQIELR 723 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++ E L+A+ G+D++ T + F+ ++T ++R IGK++ + Y GA+ Sbjct: 724 ILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR--EEITSEERRIGKIINFGVIYGMGAQR 781 Query: 448 FQKMASTT 455 F + ++ Sbjct: 782 FARETGSS 789 >gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] Length = 971 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T +S+P+ LQ I +R I +G + AD + IE R++ Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A ++G+ ++AF+ G+D++ T A+ + ++ +VT++QR+ K + Y Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809 >gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] Length = 971 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T +S+P+ LQ I +R I +G + AD + IE R++ Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A ++G+ ++AF+ G+D++ T A+ + ++ +VT++QR+ K + Y Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809 >gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] Length = 933 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 28/215 (13%) Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300 +R+L++ +K T A + FN +++A LKL +V EA+ Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIAD 624 Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L R L++ G ++ P P+ R H Q +SDP+ LQ Sbjct: 625 QHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683 Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R +A G+KL+ D + IE R++A ++G+ + AFE+G D++ T Sbjct: 684 IPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATA 743 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A F V+ D+R K + L Y G AF Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776 >gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301] gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301] Length = 964 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 7/128 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ P++ S +R + EG L AD + IE R Sbjct: 675 GRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADYSQIELR 734 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++ E L+A+ G+D++ T + F+ ++T ++R IGK++ + Y GA+ Sbjct: 735 ILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR--EEITSEERRIGKIINFGVIYGMGAQR 792 Query: 448 FQKMASTT 455 F + ++ Sbjct: 793 FARETGSS 800 >gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] Length = 985 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 74/327 (22%), Positives = 132/327 (40%), Gaps = 71/327 (21%) Query: 160 YCKGDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 YC DV +TR+++ K +E L EQ L + + RG +D+ L Sbjct: 536 YCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKEL 595 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDL--------TE 256 + +E K + +E Y + + L ++L LF + GL + T+ Sbjct: 596 S----IELNKALKNIEKSAYKIAKTDFNLSSPKQLGEVLFEQLGLDKKKSRRTKTGWSTD 651 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 L + + P I+ R+ L+T VEA+ L ++T Sbjct: 652 ANVLERLQGDNPIVPLVIE--------HRTLSKLLSTYVEALPQ----------LVEAQT 693 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS 371 GR H + +Q +T +S+P+ I S +R + Sbjct: 694 GRV----------------HTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPR 737 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 EG +L+ AD + IE R+LA ++GE +A+ G+D++ T + +T ++R + Sbjct: 738 EGWQLLSADYSQIELRILAHLSGEASLQEAYRNGDDVHALTAKILLD--KESITSNERRL 795 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLN 458 GK + + Y G Q+ A +TG++ Sbjct: 796 GKTINFGVIYGMGV---QRFARSTGVS 819 >gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906] gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906] Length = 949 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R I +G K+V AD + IE R++A ++ ++ L AF G+D++ T + F + + Sbjct: 709 IRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLDE 768 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 769 VTAEQRRSAKAINFGLIY--GMSAF 791 >gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7] gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7] Length = 856 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 26/160 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L++ + SDGR+ + +RTGR S QN+P Sbjct: 569 VDGLLKEVESDGRVHSVFK-QTETRTGRISSTEPNMQNIPVRKE---------------- 611 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R +A EG L+ AD + IE RVLA + G++ K FE G D++ Sbjct: 612 ---------IGRNMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHA 662 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 T ++ F + V + R+ K + + Y GA + K Sbjct: 663 MTASQVFGIPADMVLPEMRSAAKAVNFGIIYGIGAFSLSK 702 >gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4] gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4] Length = 914 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 32/176 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 F + A R A + ++ L++ + DGR+ T A+ TGR S QN+P + Sbjct: 609 FLEHLLAHRDATRLKVTVDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT 667 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392 + + +R + EG L+ AD + IE R++A + Sbjct: 668 DAGRQ-------------------------IRDGFVVGEGYDSLLTADYSQIEMRIMAHV 702 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +G+ ++AF TGEDL+ AR+F V +VT + R K M L Y G AF Sbjct: 703 SGDAGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAY--GLSAF 756 >gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1] gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1] Length = 928 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ LKAF G+D++ T A F + V+ +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLKAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1] gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1] Length = 949 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++A N DGR+ T + A+ TGR S QN+P + + E Sbjct: 660 VQTLIDATNPRDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE----------- 707 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +RS + EG + L+ +D + +E R++A ++G++ ++AF +G D Sbjct: 708 --------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDF 753 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + + ++T DQR+ K M L Y Sbjct: 754 HKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 786 >gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 928 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT++QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] Length = 927 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R +A G+KL+ D + Sbjct: 649 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ + AFE+G D++ T A F V+ D+R K + L Y Sbjct: 708 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] Length = 971 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T +S+P+ LQ I +R I +G + AD + IE R++ Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A ++G+ ++AF+ G+D++ T A+ + ++ +VT++QR+ K + Y Sbjct: 758 AHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809 >gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 437 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 231 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 289 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 290 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 347 Query: 444 GAKAF 448 G AF Sbjct: 348 GMSAF 352 >gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium] Length = 942 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 8/122 (6%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAG 383 + R H +Q++ + ++SD LQ I +R I + L+ AD + Sbjct: 664 KTKRIHTSFNQVVA-VTGRLSSDNPNLQNIPIRTERGRQIRKAFIPRDSDHVLLSADYSQ 722 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G++ +AF+ G+D++ T A+ F VA A VTK+ R K + + Y Sbjct: 723 IELRIVASISGDKNMCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVNFGIIYGQ 782 Query: 444 GA 445 GA Sbjct: 783 GA 784 >gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34] gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34] Length = 923 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T +SDP+ LQ I Sbjct: 622 LEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNEEG 680 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G++ L AF G+D++ T A ++ Sbjct: 681 RRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDI 740 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 V+ +QR K + L Y G AF Sbjct: 741 ENVSSEQRRRAKAINFGLIY--GMSAF 765 >gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100] gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris] Length = 927 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +SDP+ LQ I +R +A G+KL+ D + Sbjct: 649 PQSGRVHTSYHQAGAATGRLSSSDPN-LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ + AFE+G D++ T A F V+ D+R K + L Y Sbjct: 708 IELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v] Length = 605 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443 Query: 444 GAKAF 448 G AF Sbjct: 444 GMSAF 448 >gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] Length = 971 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T +S+P+ LQ I +R I +G + AD + IE R++ Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A ++G+ ++AF+ G+D++ T A+ + ++ +VT++QR+ K + Y Sbjct: 758 AHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809 >gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4] gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4] Length = 915 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 30/169 (17%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 F + A R A + ++ L++A+ DGR+ T A+ TGR S QN+P + Sbjct: 610 FLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRN 668 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392 + E +R + +G L+ AD + IE R++A + Sbjct: 669 DAGRE-------------------------IRDGFVVGQGFDVLLTADYSQIEMRIMAHV 703 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +G++ ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 704 SGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY 752 >gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1] gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1] Length = 922 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG+K++ AD + IE R++A ++ + L AF G+D++ T A F Sbjct: 682 IRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAFAEGKDIHRATAAEVFGTDFDS 741 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 742 VTSEQRRRAKAVNFGLIY--GMSAF 764 >gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna Polymerase I Complexed With DTMP gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna Polymerase I Complexed With Deoxynucleoside Triphosphate And Pyrophosphate Length = 605 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443 Query: 444 GAKAF 448 G AF Sbjct: 444 GMSAF 448 >gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] Length = 913 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 31/158 (19%) Query: 289 LKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 +KL VE A+ SDGR+ T Q A+ TGR S QN+P +R+ E + Sbjct: 619 IKLRQTVEGLRKAIQSDGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARNEEGM----- 670 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403 +R EG + L+ AD + IE R++A ++G+Q ++AF Sbjct: 671 ------------------RIRQAFTVGEGYECLMTADYSQIEMRIMAHLSGDQALIEAFR 712 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +GEDL+ A + VT QR+ K M L Y Sbjct: 713 SGEDLHRYVAALVHGIDVDDVTAQQRSHVKAMSYGLAY 750 >gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Manganese gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc Only gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And Manganese gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate And Europium (Iii) Ion gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Short Dna Fragment Carrying 2'-0- Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3' gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Tetramer Carrying 2'-O-(3-Aminopropyl)- Rna Modification 5'-D(Tt)-Ap(U)-D(T)-3' gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431] gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G] gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180] gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357] gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74] Length = 605 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443 Query: 444 GAKAF 448 G AF Sbjct: 444 GMSAF 448 >gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227] Length = 605 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443 Query: 444 GAKAF 448 G AF Sbjct: 444 GMSAF 448 >gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] Length = 894 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 21/138 (15%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII---SDC---VRSCVIASEGKKLVVADLAGI 384 R R H Q + +SDP+ LQ I SD +R +A G L+ AD + I Sbjct: 615 RTGRVHTHYHQAVAATGRLSSSDPN-LQNIPVRSDLGRRIRQAFVAEPGHLLISADYSQI 673 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY--- 441 E R++A ++G+ +AF G D++ T A F + QVT +QR K + L Y Sbjct: 674 ELRIMAHLSGDAGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQT 733 Query: 442 -----------QGGAKAF 448 QG AKA+ Sbjct: 734 PYGLAQQLGVGQGEAKAY 751 >gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A] gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A] Length = 971 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 336 HEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T +S+P+ LQ I +R I +G + AD + IE R++ Sbjct: 699 HTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIM 757 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A ++G+ ++AF+ G+D++ T A+ + ++ +VT++QR+ K + Y Sbjct: 758 AHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIY 809 >gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex Length = 605 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443 Query: 444 GAKAF 448 G AF Sbjct: 444 GMSAF 448 >gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM 22836] Length = 933 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 P+ + H +Q +T +++P+ I I D +R IA EG AD + I Sbjct: 655 PKDGKIHTSFNQTVTATGRLSSTNPNLQNIPIRDAQGREIRKSFIADEGCLFFSADYSQI 714 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ + ++AF +GED++ T A+ + + +VT D R K + Y Sbjct: 715 ELRIMAHLSQDPSMVEAFNSGEDIHAATAAKIYKLKIDEVTSDMRRKAKTANFGIIY 771 >gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74] Length = 605 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443 Query: 444 GAKAF 448 G AF Sbjct: 444 GMSAF 448 >gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] Length = 912 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 31/158 (19%) Query: 289 LKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 +KL VE A+ +DGR+ T Q A+ TGR S QN+P HEE +I Sbjct: 618 IKLRQTVEGLRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIPA---RHEEGMRI-- 671 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403 R EG L+ AD + IE R++A ++G+Q ++AF Sbjct: 672 --------------------REAFTVGEGYDCLMTADYSQIEMRIMAHLSGDQALIEAFR 711 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +GEDL+ A + VT QR+ K M L Y Sbjct: 712 SGEDLHRYVAALVHGIEVGDVTAQQRSHVKAMSYGLAY 749 >gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12] Length = 297 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISD------CVRSCVIASEG-KKLVVADLA 382 PR R H Q + + DP+ LQ I + +RS + EG L+ AD + Sbjct: 17 PRDGRIHTTFTQTVAATGRLSSVDPN-LQNIPNRNATGRDIRSAFVPGEGFADLLSADYS 75 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E R++A ++G++ +KAF++G D + + + + +VT DQR K M L Y Sbjct: 76 QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAY 134 >gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654] gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654] Length = 932 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGK LV D + IE R+LA +AG + +AF GED++ T + F+V + Sbjct: 692 IREAFVAPEGKVLVSLDYSQIELRILAHVAGIESMKQAFRDGEDIHAATASEMFDVPLDE 751 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 752 MTPDVRRQAKAINFGVIY 769 >gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] Length = 950 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++A N DGR+ T + A+ TGR S QN+P + + E Sbjct: 661 VQTLIDATNPRDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE----------- 708 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +RS + EG + L+ +D + +E R++A ++G++ ++AF +G D Sbjct: 709 --------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDF 754 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + + ++T DQR+ K M L Y Sbjct: 755 HKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 787 >gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909] gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909] Length = 932 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G +++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T] gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6] Length = 605 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443 Query: 444 GAKAF 448 G AF Sbjct: 444 GMSAF 448 >gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] Length = 887 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 84/370 (22%), Positives = 135/370 (36%), Gaps = 117/370 (31%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 F + A R A + ++ L++A+ DGR+ T A+ TGR S QN+P + Sbjct: 582 FLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRN 640 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392 + E +R + +G L+ AD + IE R++A + Sbjct: 641 DAGRE-------------------------IRDGFVVGQGFDVLLTADYSQIEMRIMAHV 675 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 676 SGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY----------- 724 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 GL+ A +K ++ E K+ Sbjct: 725 ---GLSAYGLASQLKIST---------------------------------EEAKQQMDA 748 Query: 513 KHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +R + + LH EQ ++G + + +RR +P Sbjct: 749 YFARFGGVRDYLHAVVEQARKDGYTSTLYGRRRYLP------------------------ 784 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IV 625 LN+ RQ RE L I Q + DI+ M+N KA D ++ Sbjct: 785 -------DLNSDNRQ-RREVAERAALNAPI-QGTAADIIKVAMINVQKALADAGLKSRML 835 Query: 626 LTVHDEIVCE 635 L VHDE+V E Sbjct: 836 LQVHDELVLE 845 >gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 919 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 736 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIE 794 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ + AF +GEDL+ T FNV P V + R K M L Y G Sbjct: 795 LRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAY--GL 852 Query: 446 KAF 448 AF Sbjct: 853 SAF 855 >gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 327 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 385 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 386 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 443 Query: 444 GAKAF 448 G AF Sbjct: 444 GMSAF 448 >gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] Length = 838 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 9/131 (6%) Query: 319 WSGCVFPPQNL--PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIA 370 +G + P ++ P R H + Q + ++S+P+ LQ I ++ +R I Sbjct: 550 LTGYLIPLRDYINPETKRIHTKWSQTVAGTGRIVSSEPN-LQNIPVKGEWAEFLREVFIP 608 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G + AD + IE R+LA M+ + +KAF G+D++ T + F++ VT + R Sbjct: 609 ENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHTATASEIFSIPENAVTDEHRR 668 Query: 431 IGKVMELALGY 441 I K + + Y Sbjct: 669 IAKTVNFGISY 679 >gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894] gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894] Length = 927 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 LQ+ G ++ P P+ R H Q +T ++DP+ LQ I Sbjct: 627 LQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEG 685 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 686 RRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPL 745 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 V+ +QR K + L Y G AF Sbjct: 746 ESVSNEQRRSAKAINFGLIY--GMSAF 770 >gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] Length = 891 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 10/134 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q +T +SDP+ LQ I +R + +EG L+ AD + Sbjct: 613 PDTGRIHTSFNQAVTATGRLSSSDPN-LQNIPIRTEEGRRIREAFVPAEGNLLLAADYSQ 671 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E R+LA MA E ++F GED++ T + F V VT + R K + + Y Sbjct: 672 VELRILAHMADEPALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTINFGVLY-- 729 Query: 444 GAKAFQKMASTTGL 457 G AF +A + G+ Sbjct: 730 GMSAF-GLAKSLGI 742 >gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149] gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149] Length = 902 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 105/238 (44%), Gaps = 39/238 (16%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLK--LNT 293 ++L+ LF E GL +T + + L Q + V + +R A LK ++ Sbjct: 557 KQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEHLLRHRDVAKLKTTVDG 616 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+++++ DGR+ T + A+ TGR S QN+P R+ E Sbjct: 617 LLKSVSEDGRIHTTFKQTVAA-TGRLSSTDPNLQNIP--IRTEE---------------- 657 Query: 354 PDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + +G + L+ AD + IE R++A ++ + ++AF +G D + T Sbjct: 658 -------GRRIRRAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGHDFHAAT 710 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---QKMASTT----GLNLNTFA 463 + F V A+VT DQR K M L Y G AF Q++ T GL N FA Sbjct: 711 ASSVFGVPVAEVTADQRRKIKAMNYGLAY--GLSAFGLSQQLGITAEEARGLMDNYFA 766 >gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata] gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata] Length = 1786 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R C +A +G K V+AD + IE R+ A +A + ++A++ DL+ T + N + +V Sbjct: 1553 RECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQNVDLHSLTASILKNKSINEV 1612 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 K++R + K + L + G + +M + TG NL Sbjct: 1613 NKEERQLAKAVNFGLIF-GMSINGLRMYAETGYNL 1646 >gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] Length = 937 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G +++ AD + IE R++A ++ + +KAF +D++ T A FNV+ Sbjct: 681 IRQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIKAFTADKDIHRATAAEVFNVSVET 740 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 T +QR K + L Y G AF Sbjct: 741 ATDEQRRSAKAINFGLIY--GMSAF 763 >gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665] gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 937 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 25/219 (11%) Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 T G+ + ++L+ LF + T+T + S + L Q F + A R Sbjct: 578 TGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHR 637 Query: 286 SAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A T L+E + D R+ T A+ TGR S QN+P + + + ++ Sbjct: 638 DATKLRQTVEGLLETVAPDDRIHTTYSQTAAA-TGRLSSLHPNLQNIPVRTEAGRRIREV 696 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++D V A E L+ AD + IE R++A ++ ++ ++AF Sbjct: 697 F----------------VADEV-----AGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAF 735 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 GEDL+ ++ F V P +VT +QRA K M L Y Sbjct: 736 REGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAY 774 >gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 751 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 2/114 (1%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 P L R H +Q+ T + +P+ LQ + R ++A +G L+ D + IE Sbjct: 426 PHQLKADGRIHGSFNQVATVTGRFASREPN-LQNLPPRARRLIVAPKGWLLLGIDFSQIE 484 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 R+LA M+G+ + + GEDLY T AR F V P D K+M++ L Sbjct: 485 PRILAHMSGDPHFREPYLKGEDLYSTLAARVFKV-PLSECGDGSKYRKMMKIGL 537 >gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] Length = 895 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 + V+ + L+ AD + IE R++A ++ ++ ++AF +G D + T AR F V P V Sbjct: 656 KGFVVGGGFESLMTADYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAV 715 Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448 + +QRA K M L Y G AF Sbjct: 716 SVEQRAKIKAMNYGLAY--GLSAF 737 >gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium] Length = 916 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 58/311 (18%) Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLN 208 Y DV VT E+ K L+ + +L L Q + G +D L + Sbjct: 485 YACEDVIVTHELNKVLDEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGLLNA-- 542 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLE---KLKTWLFLETGLHLEDLTETTCQRVLSS 265 Q +DV K E++S + L + LE +++ LF E GL LE + T + S+ Sbjct: 543 QQLDV--VKQMNEIQSQAFELAGDAFNLESPKQIQQILFSEEGLGLE-AKKKTPKGAPST 599 Query: 266 NKKLTPQAIQVFNN---RMRASRSAVLKLN-TLVEAMNSDGRLRG----TLQFLGASRTG 317 N+ +A+++ ++ + S + KLN T +EA+ L T + TG Sbjct: 600 NE----EALKLLDHPLVDLILSYRTLTKLNSTYLEALPKQIDLNTKRLHTSYHQAVTATG 655 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P I T L I R IA +G ++ Sbjct: 656 RLSSSNPNLQNIP-----------IRTELGARI--------------RGAFIAGKGNVII 690 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ ++ ++AF D++ T + FNV +V KD R K + Sbjct: 691 AADYSQIELRIMAHISQDKSLIEAFNNDVDVHSATASMMFNVPIEEVNKDHRRNAKAINF 750 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 751 GLIY--GMSAF 759 >gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] Length = 864 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T AS TGR S QN+P + S Sbjct: 578 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTESGR------------- 623 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS I EG + L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 624 ------------TIRSAFIVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYKEGEDLH 671 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F+V +VT + R K M L Y G AF Sbjct: 672 NYVGSRVFDVPVDKVTSELRRRVKAMSYGLVY--GLSAF 708 >gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] Length = 942 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 11/152 (7%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIA-SEGKKL 376 P Q P R H + Q + +++P+ LQ I +R I S +L Sbjct: 657 LPQQVAPSTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIRTERGRQIRKAFIPRSPEYQL 715 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++ E +++F+ GED++ T A+ F V +VT++QR+ K + Sbjct: 716 LAADYSQIELRIIAALSEEDTMIESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVN 775 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + Y G AF +++ T L+ L+ T Sbjct: 776 FGIIY--GVSAF-GLSNQTNLSRTEAKELIDT 804 >gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis] Length = 1711 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-ETGEDLYVTTYARSFNV 419 S C+R+ +A GK L+ AD + IE R+LA ++G++ + AF +G D++ + A ++ Sbjct: 1445 SFCLRNIFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSGVDIFKSIAAMFYSE 1504 Query: 420 APA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN--------LNTFAHL---- 465 + VT QR K + Y GA+ + +T+ + +N++ + Sbjct: 1505 ISSIDDVTDKQRDTTKQTCYGILYGMGAQTLAQQMNTSETDAQNAMDSFMNSYPMVKVYF 1564 Query: 466 ------------VKTNSAPEEWEDAENFCRWMQENHPE-HAIEDLFIGTACERVKKAWRQ 512 ++T S + R +H E A+ G+A + VK A + Sbjct: 1565 NRLVAQCKEKGYIETISGRRRYLPEIKSVRLKMRSHAERQAVNSTIQGSAADIVKMATYK 1624 Query: 513 KHSRVSEL-WNELHQ 526 H V+ L WN LHQ Sbjct: 1625 IHCAVASLGWNTLHQ 1639 >gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 815 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 25/219 (11%) Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 T G+ + ++L+ LF + T+T + S + L Q F + A R Sbjct: 578 TGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHR 637 Query: 286 SAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A T L+E + D R+ T A+ TGR S QN+P + + + ++ Sbjct: 638 DATKLRQTVEGLLETVAPDDRIHTTYSQTAAA-TGRLSSLHPNLQNIPVRTEAGRRIREV 696 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++D V A E L+ AD + IE R++A ++ ++ ++AF Sbjct: 697 F----------------VADEV-----AGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAF 735 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 GEDL+ ++ F V P +VT +QRA K M L Y Sbjct: 736 REGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAY 774 >gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H] gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H] Length = 936 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + +R H Q +T ++DP+ LQ I +R IA + K+V D + I Sbjct: 658 KTNRLHTSYHQAVTATGRLSSTDPN-LQNIPIRSEQGRKIRQAFIAPKDHKIVAIDYSQI 716 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ + AF G+D++ T A F V +VT DQR K + L Y G Sbjct: 717 ELRIMAHLSNDKGLVTAFSEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIY--G 774 Query: 445 AKAF 448 AF Sbjct: 775 MSAF 778 >gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 976 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q T +S+P+ I S +R + +G KL+ AD + IE Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYSQIE 742 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A E+ + AF +D++ T F + D+R +GK + + Y G Sbjct: 743 LRILAHLANEEILINAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFGVIYGMGI 800 Query: 446 KAFQKMASTTGLN 458 K F A +TG++ Sbjct: 801 KKF---ARSTGVS 810 >gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032] gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032] Length = 966 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 LQ+ G ++ P P+ R H Q +T ++DP+ LQ I Sbjct: 666 LQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEG 724 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 725 RRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPL 784 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 V+ +QR K + L Y G AF Sbjct: 785 ESVSNEQRRSAKAINFGLIY--GMSAF 809 >gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] Length = 885 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H +Q +T +++P+ LQ I +R +++SEG LV +D + I Sbjct: 608 KTGRIHSRFNQTVTSTGRISSTEPN-LQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQI 666 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++ + + + AF G D++ T + F+ +V+ + R++ K + + Y Sbjct: 667 ELRVLASLSNDTYMINAFADGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVY 723 >gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] Length = 908 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 28/168 (16%) Query: 277 FNNRMRASRSAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 F + A R A+ T L+ ++ DGR+R T Q A+ TGR S QN+P + Sbjct: 597 FLEHLLAHRDAIRLRQTVEGLLRSVADDGRIRTTFQQTIAA-TGRLSSADPNLQNIPIRT 655 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + ++ R+ V+ L+ AD + IE R++A ++ Sbjct: 656 DAGRQIR------------------------RAFVVGPGYATLLTADYSQIEMRIMAHLS 691 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 G++ + AF +GEDL+ +R F V +VT R+ K M L Y Sbjct: 692 GDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAMSYGLAY 739 >gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29] gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29] Length = 607 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 349 SITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 SIT P SD VR C +A G + D E RVLA ++G++ ++AF+ G D Sbjct: 363 SITGIPAQTLPASDWTVRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQAFKDGAD 422 Query: 408 LYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 L++ T +F +TKD +R K + Y GGA +A TG+++ T + Sbjct: 423 LHLMTARAAFG---DHITKDDPERKYAKTVNFGRVYGGGANT---VAEQTGISIETAKQV 476 Query: 466 V 466 V Sbjct: 477 V 477 >gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32] gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32] Length = 891 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 9/155 (5%) Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360 GRL LQ+ S+ P R H +Q +T+ +S+P+ LQ I Sbjct: 587 GRL--ILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYNQAVTNTGRLSSSEPN-LQNIP 643 Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R IA EG ++ AD + IE RVLA ++ ++ AF ED++ T A Sbjct: 644 IRSEEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDRVFCDAFAKDEDIHTRTAAE 703 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 F + P VT + R K + + Y G + K Sbjct: 704 VFGLFPGMVTPEMRRQAKTINFGVIYGQGPFSLAK 738 >gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555] gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016] gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555] gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 880 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 25/148 (16%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DG++ + TGR S QN+P +E+ +I PD Sbjct: 599 VIEEDGKIHSNFN-QTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKIFI---------PDN 648 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 R CVI S AD + IE RVLA ++G++ + AF D++ T + Sbjct: 649 --------RDCVILS-------ADYSQIELRVLAHISGDENLINAFINHNDIHTKTASEV 693 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGG 444 FNV +VT QR+ K + + Y G Sbjct: 694 FNVPLGEVTSTQRSNAKAVNFGIVYGIG 721 >gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] Length = 880 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q IT +++P+ P ++ + +R + EG V AD + IE RV Sbjct: 606 RIHGKFNQTITATGRISSTEPNLQNIPARVELGRAIRKVFLPEEGYTFVDADYSQIELRV 665 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++G++ + A+E +D++ T + F V QV+ QR K + + Y G AF Sbjct: 666 LAHLSGDKNLIHAYEMEQDIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVY--GLSAF 723 >gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084] gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084] Length = 922 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 8/162 (4%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 TL + DGR+R L + ++ + + P ++ R R H L+Q + + Sbjct: 607 KTLEDLAQQDGRVRMILDYRERAKI-KSTYLDALPADIRRDGRIHTTLNQTVAATGRLSS 665 Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S P+ I + VR+ EG + D + IE R+LA ++ + + AF +G Sbjct: 666 SAPNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGA 725 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 D + T AR F V +VT R+ K + + Y G +AF Sbjct: 726 DFHAATAARVFGVPVEEVTPQLRSRAKAVNFGIVY--GQQAF 765 >gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043] gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043] Length = 891 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 113/281 (40%), Gaps = 34/281 (12%) Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 E LS E L ++ + G VDV TL + + T+ Q+ G + Sbjct: 485 ELLSDIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVTQAQQDCWDAIGGDQINLGS 544 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 ++L+ LF G+ T+T + +L + F + R A KL V Sbjct: 545 PKQLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHPFLEALLRHRDAA-KLRVTV 603 Query: 296 EAM----NSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 E + + DGR+ T LQ + A TGR S QN+P R+ E Sbjct: 604 EGLQKSVSDDGRIHTTYLQTIAA--TGRLSSTEPNLQNVP--IRTEE------------- 646 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + +G L+ AD + IE RV+A ++G+ ++AF +GEDL+ Sbjct: 647 ----------GRRIRELFVVGDGYDALMSADYSQIEMRVMAHLSGDSGLIEAFRSGEDLH 696 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ F VAP VT R+ K M L Y A K Sbjct: 697 RFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYGLSAYGLSK 737 >gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] Length = 888 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 611 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 669 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ ++AF +GEDL+ T ++ F V P V + R K M L Y G Sbjct: 670 LRVMAHLSEDEGLIEAFTSGEDLHTTAASQVFAVEPTAVDAEMRRKIKAMSYGLAY--GL 727 Query: 446 KAF 448 AF Sbjct: 728 SAF 730 >gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 885 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H +Q +T +++P+ LQ I +R +++SEG LV +D + I Sbjct: 608 KTGRIHSRFNQTVTSTGRISSTEPN-LQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQI 666 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++ + + + AF G D++ T + F+ +V+ + R++ K + + Y Sbjct: 667 ELRVLASLSNDTYMINAFADGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVY 723 >gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14] Length = 928 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F++ VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] Length = 910 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 32/216 (14%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT--- 293 ++L+ LF + G+ T+T + L + F + A R A+ T Sbjct: 565 KQLQEVLFDDLGMPKTRRTKTGYTTDADALADLYVKTEHPFLEHLLAHREAIRLRQTVEG 624 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ ++ DGR+ T Q A+ TGR S QN+P R+ E Sbjct: 625 LLRSVAPDGRIHTTFQQTIAA-TGRLSSADPNLQNIP--IRTEEGY-------------- 667 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ AD + IE R++A ++G++ ++AF +GEDL+ Sbjct: 668 ---------RIREGFVVGEGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYV 718 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F V +VT R+ K M L Y G AF Sbjct: 719 GSRVFGVPTDEVTSAMRSKIKAMSYGLAY--GLSAF 752 >gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4] gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4] Length = 934 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-----VRSCVIASEGKKLVVAD 380 PQ R R H +Q+ T +++P+ I + +R+ I +EG L+ AD Sbjct: 652 PQLADREGRVHTTFNQVGTATGRLSSTNPNLQNIPTRTALGREIRAAFIPAEGNVLLSAD 711 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R++A + + L A+ TG+D++ T A F V P + K+ R K + + Sbjct: 712 YSQIELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIV 771 Query: 441 Y 441 Y Sbjct: 772 Y 772 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+C IA G +++ AD + IE R++A ++G+ L A+ GEDL+ T + + Sbjct: 361 MRACFIAPPGYQIIKADYSQIELRIVAEISGDAKMLDAYVKGEDLHTLTASLITGKLLEE 420 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMA 452 VT + R I K + L Y GA Q A Sbjct: 421 VTTEDRRIAKSVNFGLIYGMGAAKLQAYA 449 >gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] Length = 976 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q T +S+P+ I S +R + +G KL+ AD + IE Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYSQIE 742 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A E+ + AF +D++ T F + D+R +GK + + Y G Sbjct: 743 LRILAHLANEEILITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINFGVIYGMGI 800 Query: 446 KAFQKMASTTGLN 458 K F A +TG++ Sbjct: 801 KKF---ARSTGVS 810 >gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] Length = 953 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 16/191 (8%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 +R L++ G ++ P Q R H + Q + +++P+ LQ I Sbjct: 648 IRNILEYRGLAKLKSTYVDALPLQVEESTGRVHTDYMQTVAATGRLSSNNPN-LQNIPIR 706 Query: 361 ---SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 VR I ++ L+ AD + IE R++A ++ E+ ++AF+ GED++ +T ++ Sbjct: 707 TERGRQVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIEAFKNGEDIHASTASKV 766 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V +VT+ QR+ K + + Y G AF +++ T L+ L+ T +E Sbjct: 767 FGVPIEEVTRAQRSNAKTVNFGIIY--GVSAF-GLSNQTDLSRGEAKELIDTY-----YE 818 Query: 477 DAENFCRWMQE 487 ++M E Sbjct: 819 TYPKLKKYMSE 829 >gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG] gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF] Length = 914 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 637 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIE 695 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ + AF +GEDL+ T FNV P V + R K M L Y G Sbjct: 696 LRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAY--GL 753 Query: 446 KAF 448 AF Sbjct: 754 SAF 756 >gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82] gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82] Length = 930 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAG 383 + + R H +Q IT +++P+ P++I + +R + EG + + AD + Sbjct: 651 IAKDGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA M+G++ ++A+ +D++ T ++ F++ +VT QR K + + Y Sbjct: 711 IELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVY 768 >gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] Length = 878 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT ++DP+ P+++ + +R I +G V AD + IE R Sbjct: 603 GRIHGTFNQTITATGRISSTDPNLQNIPMKLELGRLIRKAFIPEDGYVFVDADYSQIELR 662 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA ++ +Q AF D++ TT + F+V QVT QR K + + Y G A Sbjct: 663 VLAHLSEDQVMQNAFLNHVDIHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVY--GISA 720 Query: 448 F 448 F Sbjct: 721 F 721 >gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 920 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R + EG V AD + IE R Sbjct: 645 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGREIRKVFVPKEGCVFVDADYSQIELR 704 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA M+G++ ++A+ + +D++ T + F+V +VT QR K + + Y G A Sbjct: 705 ILAHMSGDERLIEAYRSAQDIHAITASEVFHVPLGEVTPLQRRNAKAVNFGIVY--GISA 762 Query: 448 F 448 F Sbjct: 763 F 763 >gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] Length = 939 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 25/171 (14%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +TL +N+ + T L A+ TGR + QN+P + +E Sbjct: 649 DTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQNIPIKNIEGKE------------- 695 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +RS ++ + KL+ AD + IE R+LA M + KAF ED++ Sbjct: 696 ------------IRSAFVSDKNSKLISADYSQIEMRILAHMGDVKELKKAFLNKEDIHTL 743 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 T ++ F+V+ +V +D R K + + Y + K S + F Sbjct: 744 TASQIFDVSLKKVDEDMRRKAKAINFGIIYGISSYGLAKQISVSNSEAENF 794 >gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4] Length = 930 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAG 383 + + R H +Q IT +++P+ P++I + +R + EG + + AD + Sbjct: 651 IAKDGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA M+G++ ++A+ +D++ T ++ F++ +VT QR K + + Y Sbjct: 711 IELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVY 768 >gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] Length = 931 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q +T +S+P+ LQ I +R I EG + AD + Sbjct: 653 PATGRIHTSFNQTVTATGRLSSSNPN-LQNIPIRNEDGKEIRKAFIPDEGCEFFSADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++ + ++AF+ +D++ T A+ + V +VT++QR+ K + Y Sbjct: 712 IELRIMAHLSNDPHMIEAFQKDQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGIIY 769 >gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653] gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653] Length = 477 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 11/143 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 200 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 258 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ + ++AF +GEDL+ T ++ F VA ++V + R K M L Y G Sbjct: 259 LRVMAHLSEDDGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMSYGLAY--GL 316 Query: 446 KAFQKMASTTGLNLNTFAHLVKT 468 AF ++ G+ + L+ T Sbjct: 317 SAF-GLSGQLGIGADEARRLMDT 338 >gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 921 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T ++DP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 649 RVHTSYHQALTATGRLSSTDPNLQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRL 708 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A + VT DQR K + L Y Sbjct: 709 MAHFSQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY 761 >gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1] Length = 926 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAG 383 + + R H +Q IT +++P+ P++I + +R + EG + + AD + Sbjct: 647 IAKDGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQ 706 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA M+G++ ++A+ +D++ T ++ F++ +VT QR K + + Y Sbjct: 707 IELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVY 764 >gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380] gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380] Length = 932 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G +++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424] gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424] Length = 966 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 10/135 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P+ R H + +Q +T +S+P+ I S +R I + LV AD + I Sbjct: 674 PQTGRVHTDFNQAVTTTGRLSSSNPNLQNIPIRTEFSRQIRKAFITQDDWLLVSADYSQI 733 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E L+A++ +D++ T F+ +T ++R+IGK + + Y G Sbjct: 734 ELRILAHLSQEPVLLEAYQNYQDVHRVTAQLLFD--KEVITSEERSIGKTINFGVIYGMG 791 Query: 445 AKAFQKMASTTGLNL 459 A Q+ A + GL+ Sbjct: 792 A---QRFARSMGLSF 803 >gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201] gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201] Length = 960 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 21/148 (14%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +A+ DGR+ T Q A+ TGR S QN+P + + + + + D Sbjct: 671 LRDAIAEDGRIHTTYQQTVAA-TGRLSSTGPNLQNIPVRTEQGQRIRDVFV-----VGED 724 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 Q +C L+ AD + IE R++A ++G++ ++AF GEDL+ Sbjct: 725 ---TQGPFEC------------LMTADYSQIEMRIMAHLSGDEGLIEAFRGGEDLHRFVG 769 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R F+VAP VT R+ K M L Y Sbjct: 770 SRVFDVAPEDVTPQMRSKVKAMSYGLVY 797 >gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] Length = 976 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q T +S+P+ I S +R + + KL+ AD + IE Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNCKLLSADYSQIE 742 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A E+ + AF +D++ T F Q++ D+R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFGVIYGMGI 800 Query: 446 KAFQKMASTTGLN 458 K F A +TG++ Sbjct: 801 KKF---ARSTGVS 810 >gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 462 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P R H Q +SDP+ LQ I +R +A G+KL+ Sbjct: 176 LPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN-LQNIPIRTDDGRRIRRAFVAPSGRKLI 234 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D + IE R++A ++G+ + AFE+G D++ A F +VT ++R K + Sbjct: 235 ACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF 294 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 295 GLIY--GMSAF 303 >gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 894 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADL 381 Q + R H +Q IT +++P+ P+++ + +R + +G + AD Sbjct: 613 QYISEDGRIHGTFNQTITATGRISSTEPNLQNIPIRMEMGKAIRKVFVPKDGFVFLDADY 672 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA M+G++ ++A+ + D++ T A+ F V +VT +QR K + + Y Sbjct: 673 SQIELRILAHMSGDEKLIEAYNSSADIHRATAAQVFGVPLEEVTDEQRRNAKAVNFGIIY 732 Query: 442 QGGAKAF 448 G +F Sbjct: 733 --GMSSF 737 >gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] Length = 921 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T ++DP+ I I +R IA EG+ L+ AD + IE R+ Sbjct: 649 RVHTSYHQALTATGRLSSTDPNLQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRL 708 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A + + + AF+ G+D++ T A + VT DQR K + L Y Sbjct: 709 MAHFSQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY 761 >gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] Length = 884 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382 P R H +Q++T +SDP+ LQ I +R+ EG LV AD + Sbjct: 605 PETHRIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGEGFDTLVSADYS 663 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Y Sbjct: 664 QIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIY 722 >gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] Length = 895 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++A N DGR+ T + A+ TGR S QN+P Sbjct: 606 VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP------------------- 645 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 DP +I RS + EG + L+ +D + +E R++A ++G++ ++AF +G+D Sbjct: 646 -NRDPAGREI-----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDF 699 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + + +T DQR+ K M L Y Sbjct: 700 HKYVASLVYGIPVDDITSDQRSHVKAMSYGLAY 732 >gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB] gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB] Length = 901 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGIE 385 R R H +Q + +S+P+ P++ + +R IA G +V AD + IE Sbjct: 623 RTGRIHTSYNQTVAATGRLSSSNPNLQNIPIRTLEGKRIRQAFIAPPGWAIVSADYSQIE 682 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA ++ + + AF GED++ T A F V P + + R KV+ + Y G Sbjct: 683 LRVLAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPEMINAEMRRQAKVINFGVLY--GM 740 Query: 446 KAF 448 AF Sbjct: 741 SAF 743 >gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder] Length = 604 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%) Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 IT +P D L VR C +A EG+ + D E RVLA ++G++ ++AF Sbjct: 360 ITGIPAQTLPSGDWL------VRRCFLADEGELMASVDYQAQELRVLAALSGDRTMIQAF 413 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 G DL++ T ++ ++TKD +R K + Y GGAK +A TGL++ Sbjct: 414 RDGADLHLMTARAAW--PDREITKDSPERKYAKTVNFGRVYGGGAKT---VAEQTGLDME 468 Query: 461 TFAHLV 466 +V Sbjct: 469 AAKQVV 474 >gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] Length = 884 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382 P R H +Q++T +SDP+ LQ I +R+ EG LV AD + Sbjct: 605 PETHRIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGEGFDTLVSADYS 663 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Y Sbjct: 664 QIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIY 722 >gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354] gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299] gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120] Length = 810 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 532 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 590 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 591 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 648 Query: 444 GAKAF 448 G AF Sbjct: 649 GMSAF 653 >gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185] gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91] gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91] Length = 906 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G ++ AD + IE R++A ++ + ++AF G+D++ T A F ++ Q Sbjct: 667 IREAFIAPSGWYIISADYSQIELRIMAHISQDAGLIRAFLGGQDIHSATAAEVFGISVGQ 726 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V +QR KV+ L Y G F +A+ G++ Sbjct: 727 VNAEQRRYAKVINFGLIY--GMSEF-GLATQLGID 758 >gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75] gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5' exonuclease [Escherichia coli O127:H6 str. E2348/69] gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012] gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Shigella flexneri 2930-71] Length = 884 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 606 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 664 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 722 Query: 444 GAKAF 448 G AF Sbjct: 723 GMSAF 727 >gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101] gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469] gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia fergusonii ATCC 35469] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus] Length = 889 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T AS TGR S QN+P + + + Sbjct: 603 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 649 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS I +G +L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 650 -------------IRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLH 696 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F+V QVT + R K M L Y G AF Sbjct: 697 NYVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 733 >gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301] gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a str. 301] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536] gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11] gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536] gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11] gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2] gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70] gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101] Length = 916 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 638 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 696 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 697 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 754 Query: 444 GAKAF 448 G AF Sbjct: 755 GMSAF 759 >gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143] gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972] gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972] gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972] gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5] gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605] gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86] gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89] gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1] gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88] gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89] gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1] gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli S88] gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034] gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146] gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3] gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197] gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617] gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197] gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933] gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933] gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli] gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli] gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli] gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli] gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli] gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407] gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212] gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89] gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520] gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044] gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125] gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046] gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K-12 substr. W3110] gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A] gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638] gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A] gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22] gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019] gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171] gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1] gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11] gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1] gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989] gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952] gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606] gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9] gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B] gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088] gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736] gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli] gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli] gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046] gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K12 substr. W3110] gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A] gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638] gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A] gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22] gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019] gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171] gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1] gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11] gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli 55989] gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI1] gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952] gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Escherichia coli BL21(DE3)] gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606] gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)] gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1] gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088] gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1] gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112] gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010] gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68] gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1] gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482] gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489] gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007] gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3] gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327] Length = 884 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 606 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 664 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 722 Query: 444 GAKAF 448 G AF Sbjct: 723 GMSAF 727 >gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206] gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3] gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] Length = 920 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H +Q +T +S+P+ LQ I +R I EG AD + I Sbjct: 643 RTGRIHTSFNQTVTATGRLSSSEPN-LQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQI 701 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RV+A ++G+ ++AF G D++ T A+ + A VT+D+R K + Y Sbjct: 702 ELRVMAHLSGDAHMIEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIY 758 >gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] Length = 879 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T AS TGR S QN+P + + + Sbjct: 593 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 639 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS I +G +L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 640 -------------IRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLH 686 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F+V QVT + R K M L Y G AF Sbjct: 687 NYVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 723 >gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a] gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli ED1a] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39] gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI39] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217] gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217] Length = 921 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G+K++ AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 681 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGAHFEE 740 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 741 VTTEQRRRAKAVNFGLIY--GMSAF 763 >gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] Length = 885 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAG 383 PR H +Q +T +S+P+ L++ ++ V G+ L+ AD + Sbjct: 602 PRTGSLHTSFNQTVTATGRLSSSEPNLQNIPVRLELGRRLRKAFVPHGPGRLLLAADYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++G++ + AF GED++ T A F V +VT R K + + Y Sbjct: 662 IELRILAHISGDEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNFGIVY 719 >gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401] gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease [Shigella flexneri 2002017] gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671] gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71] gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82] gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024] Length = 881 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227] gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W] gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W] gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W] gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 7/122 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q +T +S+P+ LQ I +R I +G ++ AD + Sbjct: 611 PETGRVHTSFNQNVTATGRLSSSNPN-LQNIPIRTPEGKRIREAFIPRKGWEMFCADYSQ 669 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA ++ +++ ++ F++GED++ T + F + P VT + R K + + Y Sbjct: 670 IELRILAHLSQDEFLIELFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAINFGIIYGM 729 Query: 444 GA 445 GA Sbjct: 730 GA 731 >gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1] Length = 912 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ + +R + EG + L+ AD + IE Sbjct: 635 GRIHTTFNQTVAATGRLSSTDPN-LQNVHVRTEEGRAIRRGFVVGEGFESLLTADYSQIE 693 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ ++AF +GEDL+ T ++ F VA ++V + R K M L Y G Sbjct: 694 LRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMSYGLAY--GL 751 Query: 446 KAF 448 AF Sbjct: 752 SAF 754 >gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905] Length = 884 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 606 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 664 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 722 Query: 444 GAKAF 448 G AF Sbjct: 723 GMSAF 727 >gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] Length = 911 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 7/125 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISD----CVRSCVIASEGKKLVVADLAGI 384 P R H +L Q T + DP+ I I D +RS + +EG + AD + I Sbjct: 633 PETGRIHTQLIQTGTATGRLSSKDPNLQNIPIRDEDGRRIRSAFVPAEGNLFISADYSQI 692 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E VLA ++ + +AF +G D++ T + F+V+ A V+ +QR I K + + Y G Sbjct: 693 ELVVLAHLSEDPELSQAFRSGGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMY--G 750 Query: 445 AKAFQ 449 AF+ Sbjct: 751 MSAFR 755 >gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46] gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46] Length = 881 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 32/216 (14%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L+ LF + G+ T+T T + + K+ P + + R S+ + Sbjct: 536 KQLQEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYLLKFRESQKMKSTVEG 595 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++A+ DGR+ T A+ TGR S QN+P + Sbjct: 596 LIKAVADDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTE------------------- 635 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG +L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 636 ------FGRRIREAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEAYRQGEDLHNYV 689 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F V +VT + R K M L Y G AF Sbjct: 690 GSKVFGVGIDEVTPELRRRVKAMSYGLAY--GLSAF 723 >gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] Length = 905 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G +++ AD + IE R++A ++ + LKAF GED++ T + F V Sbjct: 666 IREAFIAPSGYRIISADYSQIELRIMAHISQDAGLLKAFAQGEDIHRATGSEIFGVPLET 725 Query: 424 VTKDQRAIGKVMELALGY 441 V +QR K++ L Y Sbjct: 726 VNSEQRRYAKIINFGLIY 743 >gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] Length = 948 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++A N DGR+ T + A+ TGR S QN+P Sbjct: 659 VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP------------------- 698 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 DP +I RS + EG + L+ +D + +E R++A ++G++ ++AF +G+D Sbjct: 699 -NRDPAGREI-----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDF 752 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + + +T DQR+ K M L Y Sbjct: 753 HKYVASLVYGIPVDDITSDQRSHVKAMSYGLAY 785 >gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] Length = 882 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T AS TGR S QN+P + + + Sbjct: 596 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 642 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS I +G +L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 643 -------------IRSVFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLH 689 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F+V QVT + R K M L Y G AF Sbjct: 690 NYVGSRVFDVPVDQVTPELRRRVKAMSYGLVY--GLSAF 726 >gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEG-KKLVVADLAGIEA 386 R H +Q + ++DP+ I + +R + EG ++L+ AD + IE Sbjct: 651 GRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDVGRRIRRAFVVGEGYEELLTADYSQIEL 710 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++GEQ + AF +G D + A+ F+V QV + R+ K M L Y Sbjct: 711 RIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSYGLAY 765 >gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] Length = 915 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 46/82 (56%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR +A G ++ AD + IE R++A ++ ++ L+AF G D++ T A F + A+ Sbjct: 676 VRRAFVAPPGHVILSADYSQIELRIMAHISEDEGLLRAFSEGLDVHRATAAEVFGMPLAE 735 Query: 424 VTKDQRAIGKVMELALGYQGGA 445 VT +QR KV+ L Y GA Sbjct: 736 VTSEQRRYAKVINFGLIYGMGA 757 >gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602] gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602] Length = 934 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T +SDP+ LQ I +R IA + ++ AD + Sbjct: 655 PQSGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRNDEGRRIRQAFIAPKDYIILAADYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ LKAF G+D++ T A F +V+ +QR K + L Y Sbjct: 714 IELRIMAHLSKDEGLLKAFAEGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c] gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c] Length = 971 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 R H +Q+I ++DP+ LQ I R+ V+ + L+ AD + IE Sbjct: 694 GRIHTTFNQMIAATGRLSSTDPN-LQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIE 752 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++G+ ++AF +GEDL+ A++FN+ A+V + R K M L Y Sbjct: 753 MRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYGLAY 808 >gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 933 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 28/215 (13%) Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300 +R+L++ +K T A + FN +++A LKL +V EA+ Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIAD 624 Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L R L++ G S+ P P+ R H Q +SDP+ LQ Sbjct: 625 QHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683 Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T Sbjct: 684 IPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATA 743 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A F V+ D+R K + L Y G AF Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776 >gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1] gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1] Length = 908 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 32/170 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 F + A R A + ++ L+ A+ SDGR+ T Q + A TGR S QN+P Sbjct: 603 FLQHLLAHRDATRLKVTVDGLLNAVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 660 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 + + +R + +G +L+ AD + IE R++A Sbjct: 661 TEAGRR-------------------------IRDAFVVGDGYGELMTADYSQIEMRIMAH 695 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ ++ ++AF TGEDL+ +R+F+V +VT + R K M L Y Sbjct: 696 LSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAY 745 >gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] Length = 890 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 43/268 (16%) Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL------VSSSRCLEKLKTWLFL 245 + + G+ VDVA T +++ VE ++ QE+ YG ++S+R +L LF Sbjct: 503 MENEGFQVDVAGVRTFGEMLQVEIERITQEI----YGYAGEEFNINSTR---ELGAILFD 555 Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + GL T+T + +KL P+ A V R + ++ + + L++ D Sbjct: 556 KLGLPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYR-KLTKLSSTYVTGLLKVTGPDQ 614 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 R+ + +RTGR S QN+P I T L + + Sbjct: 615 RVHSVFR-QTETRTGRISSTEPNMQNIP-----------IRTELGSQM------------ 650 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 R +A G L+ AD + IE R+LA ++ + + AF G D++ T ++ F V Sbjct: 651 --RKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQVFGVPAE 708 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQK 450 + + R K + + Y GA + + Sbjct: 709 VLPAELRRRAKAINFGIVYGIGAYSLSQ 736 >gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083] gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083] Length = 945 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 27/151 (17%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + +N D GR+ + GAS TGR + QN+P RS E Sbjct: 658 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 701 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R IA EGK LV D + IE R+LA +AG +AF G D++ Sbjct: 702 ----------GRRIREAFIAEEGKVLVALDYSQIELRILAHVAGIDSLKQAFRDGHDIHA 751 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F+V ++T D R K + + Y Sbjct: 752 MTASEMFDVPLDEMTADVRRQAKAINFGVIY 782 >gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 772 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 494 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 552 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 553 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 610 Query: 444 GAKAF 448 G AF Sbjct: 611 GMSAF 615 >gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 913 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 29/156 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DGR+ T A+ TGR S QN+P R+ E Sbjct: 628 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 668 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T Sbjct: 669 -------GRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTV 721 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F VA ++V + R K M L Y G AF Sbjct: 722 ASQVFGVATSEVDAEMRRKIKAMSYGLAY--GLSAF 755 >gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno] gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno] Length = 928 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 6/138 (4%) Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 VR IA + L+ AD + IE R++A ++ E +++F GED++ T A+ FNV Sbjct: 688 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIESFLHGEDIHRATAAKVFNVPLE 747 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT++QR+ K + + Y G AF +++ T L+ + L+ T A + + N+ Sbjct: 748 EVTREQRSHAKTVNFGIIY--GVSAF-GLSAQTDLSRSESKELIDTYYA--TYPNLRNYI 802 Query: 483 RWMQENHPEHAIEDLFIG 500 E EH + +G Sbjct: 803 NRQIEFAREHGYVETILG 820 >gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 928 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKSGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] Length = 908 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 32/170 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 F + A R A + ++ L+ A+ SDGR+ T Q + A TGR S QN+P Sbjct: 603 FLQHLLAHRDATRLKVTVDGLLNAVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 660 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 + + +R + +G +L+ AD + IE R++A Sbjct: 661 TEAGRR-------------------------IRDAFVVGDGYGELMTADYSQIEMRIMAH 695 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ ++ ++AF TGEDL+ +R+F+V +VT + R K M L Y Sbjct: 696 LSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAY 745 >gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 1009 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 7/126 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H + +Q T +S+P+ I S +R + EG +V AD + I Sbjct: 715 PDTGRVHTDFNQAATGTGRLSSSNPNLQNIPIRTEFSRQIRKAFLPKEGWLMVSADYSQI 774 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA + E ++A++T +D++ T F VT D+R +GK + + Y G Sbjct: 775 ELRILAHLTQEPVLVEAYKTNQDVHTVTAKLLFE--KETVTPDERRLGKTINFGVIYGMG 832 Query: 445 AKAFQK 450 A+ F + Sbjct: 833 AQRFAR 838 >gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297] gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297] Length = 933 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 45/268 (16%) Query: 192 INDRGYCVDVALAHTLN-----QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 I + G +DV H L+ + D+ER D L + + L S ++L LF Sbjct: 543 IEENGVKLDVEFVHELSTRFKRDLEDIERQAHD--LAGVEFNLDSP----KQLADVLFER 596 Query: 247 TGLHLEDLTET----TCQRVLS--SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 GL ++ T + T + VL+ + + P+ I + + L T+ + Sbjct: 597 MGLPVKSKTASGAPSTNEEVLTELAAEHELPRLILQSRRLRKLVGTYTDPLPTMTIDHDG 656 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 D RL T GA +TGR + QN+P RS E Sbjct: 657 DQRLHTTYNQTGA-QTGRLNSNDPNLQNIP--VRSEE----------------------- 690 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R +A +G ++V AD + IE R++ ++ + ++AF G+D++ T A + Sbjct: 691 GRSIRKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIE 750 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAF 448 QV+ +QR K + L Y G AF Sbjct: 751 EEQVSAEQRRSAKAINFGLIY--GMSAF 776 >gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1] gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1] Length = 922 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G+K++ AD + IE R++A ++ + LKAF G+D++ T A F Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 742 VTTEQRRRAKAVNFGLIY--GMSAF 764 >gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484] gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484] Length = 915 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 35/252 (13%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLE 252 G D A +L + D + Q+ + Y ++ L ++L+ LF + G+ Sbjct: 524 GIATDGAYLSSLEKSFDAQV----QDAAAEAYAVIGREVNLGSPKQLQEVLFDQLGMPKT 579 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT---LVEAMNSDGRLRGTLQ 309 +T +S L + F + A R A+ T L+ ++ DGR+ T Q Sbjct: 580 KKIKTGYTTDAASLTDLFARTQHPFLEHLLAHRDAIRLRQTVEGLLRSVAPDGRIHTTFQ 639 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369 A+ TGR S QN+P + + ++ R+ V+ Sbjct: 640 QTIAA-TGRLSSADPNLQNIPIRTEAGRQIR------------------------RAFVV 674 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 + L+ AD + IE R++A ++G++ + AF +GEDL+ +R F V +VT R Sbjct: 675 GDGYETLLTADYSQIEMRIMAHLSGDEGLIDAFRSGEDLHSYVGSRVFGVPTDEVTPAMR 734 Query: 430 AIGKVMELALGY 441 + K M L Y Sbjct: 735 SKIKAMSYGLAY 746 >gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6] Length = 857 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGI 384 P R H Q I+++PD P++ +R I + G +++ AD + I Sbjct: 579 PVTGRVHPTFQQTYAATGRLISTNPDIQKTPVRTPEGKRIRRAFIPAPGWRIISADWSQI 638 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA + + L+AF ED++ T A F P VT QR++ K + A Y G Sbjct: 639 ELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDAQRSVAKTVNFATIYGQG 698 Query: 445 AKAF 448 A A Sbjct: 699 ATAL 702 >gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407] gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407] gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 808 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 74/360 (20%), Positives = 132/360 (36%), Gaps = 96/360 (26%) Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373 + TGR + QN+PRP D D +I R+ + G Sbjct: 518 TETGRLNSFNPNGQNVPRP--------------------DNDEFKI-----RNFFVPKPG 552 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 K L D +G E R++AW +G++ + F TG D++ T + ++ K +R K Sbjct: 553 KILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKPEDEIVKKERTDAK 612 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + Y G EHA Sbjct: 613 AGNFGISYGGT----------------------------------------------EHA 626 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII--ARKRRDVPLVYM 551 ++ F + K R+ +++ N + A+++ E + I+ AR++ V +Y Sbjct: 627 LQFTF------KTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIY- 679 Query: 552 KKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + +LP S RD G+ R NT + + K+ I +++ + Sbjct: 680 -----GYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIM--KKVQNEIYESIGKQ-- 730 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS---MLYHLMTSNPSWAKGLPLKAEG 667 EG++ A D++ +HDEI+ E D E + + +M P +P++AEG Sbjct: 731 -EGVLAHGSA--DMIAQIHDEIIFEIDDDPEIVVAAEKQIKQVMEQPPVPGFPVPIEAEG 787 >gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] Length = 961 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +L+Q++T +++P+ P+++ + +R + EG V AD + IE R+ Sbjct: 687 RIHCKLNQLVTATGRLSSTEPNLQNIPIRMELGKRIRKAFVPKEGYVFVDADYSQIELRI 746 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +A ++G++ +KA++ ED++ T + F V +VT QR K + + Y Sbjct: 747 MAHLSGDEELIKAYQGEEDIHRITASHVFGVPLDEVTDLQRRNAKAVNFGIIY 799 >gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1] gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1] Length = 923 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G+KL+ D + IE R++A ++G+ + AFE+G D++ A F + Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT ++R K + L Y G AF Sbjct: 742 VTPNERRAAKAINFGLIY--GMSAF 764 >gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 308 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 T ++ +R TYG KL ENIV+A SRD+LAE M IV+ +HD V + P Sbjct: 4 NTVKKWSRIETYGAKLVENIVKAASRDLLAEAMRRLEATSNSIVMHIHDFAVIDAP 59 >gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] Length = 1042 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 8/118 (6%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIASEG-KKLVVADLAG 383 R SR H +Q + ++DP+ LQ I + +R +AS+G + L+ +D + Sbjct: 763 RDSRIHTTFEQTVAATGRLSSTDPN-LQNIPNRNVEGREIRGAFVASDGFESLLSSDYSQ 821 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E R++A ++G++ ++AF +G D + + + + Q++ DQR+ K M L Y Sbjct: 822 VELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPIDQISSDQRSHIKAMSYGLAY 879 >gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 905 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 29/156 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DGR+ T A+ TGR S QN+P R+ E Sbjct: 620 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 660 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T Sbjct: 661 -------GRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTV 713 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F VA ++V + R K M L Y G AF Sbjct: 714 ASQVFGVATSEVDAEMRRKIKAMSYGLAY--GLSAF 747 >gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200] Length = 922 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G+K++ AD + IE R++A ++ + LKAF G+D++ T A F Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 742 VTTEQRRRAKAVNFGLIY--GMSAF 764 >gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS] gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS] Length = 928 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTRRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12] gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12] Length = 859 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 29/153 (18%) Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R+ IA + ++ AD + IE R++A ++ ++ L AF G D++ T A F++A Sbjct: 618 LIRTAFIAPPEQVILAADYSQIELRIMAHLSQDENLLTAFANGWDIHTATAAEIFHIARE 677 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT +QR K + L Y G AF +A G+ E +DA+N+ Sbjct: 678 EVTSEQRRRAKAVNFGLIY--GMSAF-GLAKQIGV----------------ERQDAQNYI 718 Query: 483 RWMQENHP----------EHAIEDLFIGTACER 505 + +P + A E ++ T C R Sbjct: 719 DTYFQRYPKVLEYMNRTRQQAHEQGYVETLCGR 751 >gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 933 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 28/215 (13%) Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300 +R+L++ +K T A + FN +++A LKL +V EA+ Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIAD 624 Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L R L++ G S+ P P+ R H Q +SDP+ LQ Sbjct: 625 QHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683 Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T Sbjct: 684 IPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATA 743 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A F V+ D+R K + L Y G AF Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776 >gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74] Length = 918 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 641 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFEALMTADYSQIE 699 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ + AF +GEDL+ T F V PA V + R K M L Y G Sbjct: 700 LRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFGVEPAAVDAEMRRKIKAMSYGLAY--GL 757 Query: 446 KAF 448 AF Sbjct: 758 SAF 760 >gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23] gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23] gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 923 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P R H Q +SDP+ LQ I +R +A G+KL+ Sbjct: 637 LPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN-LQNIPIRTDDGRRIRRAFVAPSGRKLI 695 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D + IE R++A ++G+ + AFE+G D++ A F +VT ++R K + Sbjct: 696 ACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF 755 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 756 GLIY--GMSAF 764 >gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32] gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32] Length = 922 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G+K++ AD + IE R++A ++ + LKAF G+D++ T A F Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 742 VTTEQRRRAKAVNFGLIY--GMSAF 764 >gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673] gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673] Length = 890 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ P+++ + +R + EG L+ AD + IE R Sbjct: 615 GRIHGTFNQTITATGRISSTEPNLQNIPVRMELGREIRKVFVPQEGCVLLDADYSQIELR 674 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA M+G++ + A+ ED++ T + F+V +VT QR K + + Y G A Sbjct: 675 VLAHMSGDERLIDAYRMAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVY--GISA 732 Query: 448 F 448 F Sbjct: 733 F 733 >gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] Length = 986 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 10/131 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ P++ S +R + E +L+ AD + IE R Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWQLLSADYSQIELR 754 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +L ++GE+ +AF G+D++ T AR + +V+ D+R +GK + + Y GA Sbjct: 755 ILTHLSGEEVLQEAFRNGDDVHALT-ARLL-LDKDEVSSDERRLGKTINFGVIYGMGA-- 810 Query: 448 FQKMASTTGLN 458 Q+ A +TG++ Sbjct: 811 -QRFARSTGVS 820 >gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi] gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] Length = 912 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+ ++AF TGEDL+ +R+F V Sbjct: 671 IRDGFVVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIE 730 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 +VT + R K M L Y G AF Sbjct: 731 EVTPELRRRVKAMSYGLAY--GLSAF 754 >gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4] Length = 877 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ P+++ + +R + G + AD + IE R Sbjct: 602 GRIHSRFNQTITATGRISSTEPNLQNIPIRMELGREIRKVFVPRNGFLFLDADYSQIELR 661 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA M+G++ ++A++T +D++ T ++ F++ +VT QR K + + Y G A Sbjct: 662 VLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTPLQRRNAKAVNFGIVY--GISA 719 Query: 448 F 448 F Sbjct: 720 F 720 >gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901] gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901] Length = 908 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD--PLQIISD---CVRSCVIASEGKKLVVADLAGIE 385 + R H Q + +SDP+ + I +D +R IA G K+V AD + IE Sbjct: 631 KTGRVHTSYHQAVAATGRLSSSDPNLQNIPIKTDEGRRIRQAFIAPAGYKMVAADYSQIE 690 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++ + KAF G D++ +T A F A V+ +QR K + L Y G Sbjct: 691 LRIMAHLSNDPGLQKAFAEGLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIY--GM 748 Query: 446 KAF 448 AF Sbjct: 749 SAF 751 >gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] Length = 930 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R + EG V AD + IE R Sbjct: 655 GRIHGKFNQTITATGRISSTEPNLQNIPVRMALGREIRKVFVPKEGCVFVDADYSQIELR 714 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA M+G++ ++A+ + +D++ T ++ F+V +VT QR K + + Y G A Sbjct: 715 ILAHMSGDERLIEAYRSAQDIHAITASQVFHVPLDEVTPLQRRNAKAVNFGIVY--GISA 772 Query: 448 F 448 F Sbjct: 773 F 773 >gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 884 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 29/156 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DGR+ T A+ TGR S QN+P R+ E Sbjct: 599 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 639 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T Sbjct: 640 -------GRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTV 692 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F VA ++V + R K M L Y G AF Sbjct: 693 ASQVFGVATSEVDAEMRRKIKAMSYGLAY--GLSAF 726 >gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12] gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 923 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P R H Q +SDP+ LQ I +R +A G+KL+ Sbjct: 637 LPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN-LQNIPIRTDDGRRIRRAFVAPSGRKLI 695 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D + IE R++A ++G+ + AFE+G D++ A F +VT ++R K + Sbjct: 696 ACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF 755 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 756 GLIY--GMSAF 764 >gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis] gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis] Length = 267 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +V AD + IE R++A ++ + L AF ED++ T A F V A Sbjct: 28 IREAFVAPPGSHIVSADYSQIELRIMAHLSQDAGMLSAFANNEDIHRATAAEIFGVERAA 87 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 V +QR KV+ L Y G AF Sbjct: 88 VDSEQRRYAKVINFGLIY--GMSAF 110 >gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] Length = 867 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q++T ++DP+ P++ + R I EG + AD + +E R Sbjct: 592 GRIHGHFNQMVTATGRISSTDPNLQNIPIRTEMGRRFRRVFIPKEGSIFIDADYSQVELR 651 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++G++ ++A++ +D++ T + F+V ++VT R K + + Y G A Sbjct: 652 ILAALSGDEKLIRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVY--GISA 709 Query: 448 F 448 F Sbjct: 710 F 710 >gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 884 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 606 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 664 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 722 Query: 444 GAKAF 448 G AF Sbjct: 723 GMSAF 727 >gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 884 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 35/236 (14%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L LFL+ L T+T + + L+ Q Q+ N + + A LK NT V+ Sbjct: 540 KQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYRKLAKLK-NTYVD 598 Query: 297 AM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + D R+ +G + TGR S QN+P ++ E + Sbjct: 599 PIPKMVKFDDRIHTCYHQIG-TVTGRLSSSDPNLQNIP--VKTEEGIR------------ 643 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R IA +G KL+ D + +E RVLA ++ ++ +KA++ +DL+ T Sbjct: 644 -----------IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVT 692 Query: 413 YARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + F + +V+++QR + K++ ++ Y G F +A G+++ A +K Sbjct: 693 AKKIFELEEKEEVSREQRTMAKIINFSIIY--GKTPFG-LAKELGISVKDAAEYIK 745 >gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] Length = 844 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 ++ R C++ + K + + AD + IE RVLA + GE ++AFE G D++ T + + V Sbjct: 602 AEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETASWVYGV 661 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF-QKMA 452 A +V+ +QR KV+ L Y A Q+M Sbjct: 662 AAEEVSAEQRRFAKVVNFGLLYGMSAHGLAQRMG 695 >gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] Length = 932 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +S+P+ I + V+ EG V D + IE R Sbjct: 659 GRVHTTYNQTITATGRLSSSNPNLQNIPTRSELGHAVKKAFSVEEGSVFVAIDYSQIELR 718 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++G++ + AF GED + T AR F V +VT R+ K + + Y G +A Sbjct: 719 LLAHLSGDEHLVGAFNEGEDFHAETAARVFGVPVEEVTPQLRSRAKAVNFGIVY--GQQA 776 Query: 448 F 448 + Sbjct: 777 Y 777 >gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S] gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S] Length = 912 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG + L+ AD + IE R++A ++G+ ++AF TGEDL+ +R+F V Sbjct: 671 IRDGFVVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIE 730 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 +VT + R K M L Y G AF Sbjct: 731 EVTPELRRRVKAMSYGLAY--GLSAF 754 >gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] Length = 917 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 7/136 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H +Q IT +SDP+ LQ I +R IA EG L+ AD + IE Sbjct: 640 GRVHTSFNQAITTTGRLSSSDPN-LQNIPIRSAEGREIRKAFIAEEGHTLLAADYSQIEL 698 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A +G+ AF GED++ T A +A V+ + R K + + Y A Sbjct: 699 RLMAHFSGDAALCAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSAF 758 Query: 447 AFQKMASTTGLNLNTF 462 K + + TF Sbjct: 759 GLAKQLNISRGEAQTF 774 >gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 882 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 35/236 (14%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L LFL+ L T+T + + L+ Q Q+ N + + A LK NT V+ Sbjct: 538 KQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYRKLAKLK-NTYVD 596 Query: 297 AM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + D R+ +G + TGR S QN+P ++ E + Sbjct: 597 PIPKMVKFDDRIHTCYHQIG-TVTGRLSSSDPNLQNIP--VKTEEGIR------------ 641 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R IA +G KL+ D + +E RVLA ++ ++ +KA++ +DL+ T Sbjct: 642 -----------IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVT 690 Query: 413 YARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + F + +V+++QR + K++ ++ Y G F +A G+++ A +K Sbjct: 691 AKKIFELEEKEEVSREQRTMAKIINFSIIY--GKTPFG-LAKELGISVKDAAEYIK 743 >gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 870 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 10/131 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q +T +S+P+ I S +R + EG L AD + IE R+ Sbjct: 658 RVHTSFNQTVTATGRLSSSNPNLQNIPIRSEFSRRIRQAFVPQEGWLLASADYSQIELRI 717 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ E ++ F +GED++ T F +VT ++R + K + + Y GA Sbjct: 718 LAHLSQEPTLIECFRSGEDVHTLTARLLFE--KQEVTSEERRLAKTINYGVIYGMGA--- 772 Query: 449 QKMASTTGLNL 459 Q+ A T G++L Sbjct: 773 QRFARTAGVSL 783 >gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] Length = 920 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR H +Q IT +SDP+ LQ I +R C I G AD + Sbjct: 642 PRTGHIHTSFNQAITATGRLSSSDPN-LQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RV+A ++ ++ ++AF G D++ T A+ + +VT+D+R K + Y Sbjct: 701 IELRVMAHLSSDKNMIEAFMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIY 758 >gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] Length = 945 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 7/145 (4%) Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLV 377 V P P R H E +Q +T +S P+ P++ S +R I G LV Sbjct: 643 VLPTLVRPDTGRVHTEFNQAVTATGRLSSSSPNLQNIPIRTEFSRQIRRAFIPEAGWLLV 702 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA ++ E L A++ G D++ T F + ++ +R +GK++ Sbjct: 703 AADYSQIELRILAHLSQEPALLAAYQEGADVHRLT--AQFLLEKTDISSSERRLGKMINF 760 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTF 462 + Y G + F + A + F Sbjct: 761 GVIYGMGPQRFAREAGVSVAEAKVF 785 >gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 887 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 36/246 (14%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A TL Q+ + KL +ELE Y L ++L LF + GL + T+T Sbjct: 508 ASTLIQLQNEFAVKL-KELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 566 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + + L++ + DGR+ LQ L A T Sbjct: 567 TSVEVLDQLKMQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 623 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +++ + + S+PD + SC Sbjct: 624 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 662 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435 D + +E RVLA ++G+Q +AF+TG D++ T + F++ +P QVT R K + Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAV 719 Query: 436 ELALGY 441 + Y Sbjct: 720 NFGIVY 725 >gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627] gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627] Length = 928 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA + +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPQDHVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 929 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 13/178 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIA-SEGKKLVVADLA 382 PR R H Q + +++P+ LQ I VR IA ++ L+ AD + Sbjct: 650 PRTGRVHTTYMQTVAATGRLSSNNPN-LQNIPIRTERGQRVRKAFIARNDDYILLSADYS 708 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ E +++F GED++ T A+ FNV VT++QR+ K + + Y Sbjct: 709 QIELRIIAALSEEHNMIESFLHGEDIHRATAAKVFNVPLEAVTREQRSHAKTVNFGIIY- 767 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 G AF +++ T L+ + L+ T A + + N+ + EH + +G Sbjct: 768 -GVSAF-GLSAQTDLSRSQSKELIDTYYA--TYPNLRNYIQKQIHFAQEHGYVETVLG 821 >gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1] gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1] Length = 850 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q IT +++P+ P+++ + +R + EG + AD + IE RV Sbjct: 576 RIHGTFNQTITATGRISSTEPNLQNIPVRMELGREIRKVFVPQEGCVFIDADYSQIELRV 635 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 LA M+G+Q + A++ ED++ T ++ F+V +VT QR K + + Y Sbjct: 636 LAHMSGDQRLIGAYKQAEDIHAITASQVFHVPLHEVTPLQRRNAKAVNFGIVY 688 >gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] Length = 905 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 68/156 (43%), Gaps = 11/156 (7%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G S+ P P R H Q +SDP+ LQ I Sbjct: 606 LEYRGLSKLKSTYTDKLPRMINPATGRVHTRYSQAAVITGRLASSDPN-LQNIPVRTEAG 664 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 VR IA +G L+ AD + IE R++A ++ + AF GED++ T A F VA Sbjct: 665 RRVREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQSAFAAGEDIHRATAAEVFGVAL 723 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 A V+ DQR K + L Y G F +AS G+ Sbjct: 724 ADVSTDQRRAAKAINFGLIY--GMGVF-GLASNLGI 756 >gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches] gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches] Length = 608 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 9/121 (7%) Query: 349 SITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 SIT P L +R C +A EG ++ D E RVLA ++ +Q ++AF D Sbjct: 359 SITGIPAQTLPAGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDAD 418 Query: 408 LYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 L++ T +F + KD +R KV+ Y GGAK +A TGL++ T + Sbjct: 419 LHLMTARAAFG---EHIQKDDPERKYAKVVNFGRVYGGGAKT---VAEQTGLDMATAQKV 472 Query: 466 V 466 V Sbjct: 473 V 473 >gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle] Length = 608 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 9/121 (7%) Query: 349 SITSDP-DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 SIT P L +R C +A EG ++ D E RVLA ++ +Q ++AF D Sbjct: 359 SITGIPAQTLPAGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDAD 418 Query: 408 LYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 L++ T +F + KD +R KV+ Y GGAK +A TGL++ T + Sbjct: 419 LHLMTARAAFG---EHIQKDDPERKYAKVVNFGRVYGGGAKT---VAEQTGLDMATAQKV 472 Query: 466 V 466 V Sbjct: 473 V 473 >gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] Length = 859 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L+EA+ DGR+ T GA+ TGR S QN+P + + + Sbjct: 571 IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTDAGRK------------ 617 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R+ EG + L+ AD + IE RV+A ++ + ++A+ +GEDL+ Sbjct: 618 -------------IRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLH 664 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F+V +VT + R +V L+ G G AF Sbjct: 665 NYVGSRVFDVPVDEVTPELRR--RVKALSYGLVYGLSAF 701 >gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] Length = 952 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 PR R H +Q +T +S+P+ I I D +R I +G + AD + I Sbjct: 674 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQI 733 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ + AF +G D++ T A+ + V ++VT D R K + Y Sbjct: 734 ELRIMAHLSQDRNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIY 790 >gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] Length = 952 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 PR R H +Q +T +S+P+ I I D +R I +G + AD + I Sbjct: 674 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQI 733 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ + AF +G D++ T A+ + V ++VT D R K + Y Sbjct: 734 ELRIMAHLSQDRNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIY 790 >gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132] gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132] Length = 888 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 99/246 (40%), Gaps = 42/246 (17%) Query: 218 LDQELESLTYGLVSSS------RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267 ++ +L+ LT ++ + R ++L LF + G+ T T T +VL + Sbjct: 520 VNAQLDELTRSIIGYAGEEFNIRSSQQLAVVLFDQLGIKAGSKTSTGLRSTANQVLEKIR 579 Query: 268 KLTPQAIQVFNNRMRAS-RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P V RM RS L+ L + + DGRL L ++ TGR S Sbjct: 580 DQHPIVDAVLEFRMLEKLRSTYLE--PLPKMVGEDGRLHTHFNQL-STATGRLSSSQPNL 636 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN+P H P +R+C A+EG L AD + IE Sbjct: 637 QNIPIRG----------VHGPR---------------MRACFNAAEGNMLAAADYSQIEL 671 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA + + + AF ED++ T A + + VT D+R K + L Y G Sbjct: 672 RVLAHFSKDPELIDAFRHDEDIHARTAALIHDKDISAVTPDERRGAKTINFGLIYGMGV- 730 Query: 447 AFQKMA 452 QK+A Sbjct: 731 --QKLA 734 >gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] Length = 924 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 27/194 (13%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++L E +N + + T L A+ TGR + QN+P S + Sbjct: 632 DSLPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGRD------------- 678 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + + L+ AD IE R+LA +A + KAF+ ED++ Sbjct: 679 ------------IRKAFTSRKNHLLISADYNQIEMRILADLADVKELKKAFKNDEDIHSL 726 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTN 469 T ++ FNV +V +DQR K + + Y K + + F A+ K Sbjct: 727 TASQIFNVDIKKVDQDQRRKAKAINFGIIYGISQYGLAKQINVSNYEAEEFLDAYFAKFP 786 Query: 470 SAPEEWEDAENFCR 483 D FCR Sbjct: 787 EIKIYMNDTIKFCR 800 >gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114] gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114] Length = 925 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 27/194 (13%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++L E ++ + + T L A+ TGR + QN+P S+ + Sbjct: 635 DSLPEYIDKNTKRIHTSFLLAATSTGRLASADPNLQNIPIKSKEGK-------------- 680 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +RS ++ +G ++ AD + IE RVLA +A + KAF+ ED++ Sbjct: 681 -----------LIRSAFVSEKGSSIISADYSQIEMRVLAHVADVKELKKAFKNNEDIHNI 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT--FAHLVKTN 469 T ++ F ++ +D R K + + Y + K S + F++ K Sbjct: 730 TASQIFECDIKKINEDMRRKAKAINFGIIYGISSYGLAKQISVSNPEAEQFLFSYFKKFP 789 Query: 470 SAPEEWEDAENFCR 483 + ++ FCR Sbjct: 790 EIRDYMQETLEFCR 803 >gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411] gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411] Length = 859 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L+EA+ DGR+ T GA+ TGR S QN+P + + + Sbjct: 571 IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTDAGRK------------ 617 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R+ EG + L+ AD + IE RV+A ++ + ++A+ +GEDL+ Sbjct: 618 -------------IRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLH 664 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +R F+V +VT + R +V L+ G G AF Sbjct: 665 NYVGSRVFDVPVDEVTPELRR--RVKALSYGLVYGLSAF 701 >gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] Length = 931 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +S P+ I + V+ EG V D + IE R Sbjct: 658 GRVHTTYNQTITATGRLSSSSPNLQNIPTRSELGHAVKRAFSVEEGSVFVAIDYSQIELR 717 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA ++G++ + AF GED + T AR F V +VT R+ K + + Y G +A Sbjct: 718 LLAHLSGDEHLVSAFNEGEDFHAETAARVFGVPVDEVTPQLRSRAKAVNFGIVY--GQQA 775 Query: 448 F 448 + Sbjct: 776 Y 776 >gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] Length = 875 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV-VADLAGIEA 386 + H +Q+I + DP+ LQ I +R + SE ++ AD + IE Sbjct: 600 KIHTRFNQVIAQTGRLSSIDPN-LQNIPVRLDEGRKIRKAFVPSEPNSVIFAADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA + G++ L+AF G D++ T + FNV +VT D R K + + Y Sbjct: 659 RVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNFGIVY 713 >gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626] gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626] Length = 903 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q + +SDP+ I + VR+ G + D + IE R+ Sbjct: 629 RIHTTFNQTVAATGRLSSSDPNLQNIPTRSELGHRVRTAFTVPSGHVFLACDYSQIELRL 688 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++G++ + AF++G D + T +R+F V +VT + R+ K + + Y G +A+ Sbjct: 689 LAHLSGDEHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGIVY--GQQAY 746 >gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] Length = 888 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 26/151 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L+ ++E + DGR+R + + + + TGR S QN+P RS E Sbjct: 602 LDGILEYIMDDGRVRTSFKQM-ITATGRLSSVDPNLQNIP--IRSEE------------- 645 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R +A + K + AD + IE RVLA ++ + + +F+ D++ Sbjct: 646 ----------GKNIRKVFVADKNKVFIDADYSQIELRVLAHLSKDSVMIDSFKNDLDIHY 695 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F V +VT +QR K + + Y Sbjct: 696 KTASEVFGVPINEVTDNQRRSAKAVNFGIVY 726 >gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1] Length = 832 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 555 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 614 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 615 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671 >gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] Length = 959 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 8/125 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383 P + H +Q +T +++P+ I + +R I S+ + L++ AD + Sbjct: 680 PVTGKIHTSFNQAVTATGRLSSTNPNLQNIPVRDELGRRIRKAFIPSDDEHLLLSADYSQ 739 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 +E R++A ++G++ + AFE GED++ T AR F A+V D+R K + Y Sbjct: 740 VELRLMAHLSGDESLIAAFEHGEDVHAATAARLFGKEVAEVDSDERRKAKTANFGIIY-- 797 Query: 444 GAKAF 448 G AF Sbjct: 798 GISAF 802 >gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 885 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T ++DP+ LQ I +R +ASEG LV AD + I Sbjct: 608 KTKRIHSRFMQTVTATGRISSTDPN-LQNIPIKTEEGRLIRKAFLASEGGVLVDADYSQI 666 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++ ++ L AF+ G D++ T + F+V +V QR K + + Y Sbjct: 667 ELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDRQRYEAKAVNFGIVY 723 >gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29] Length = 478 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 66/269 (24%), Positives = 110/269 (40%), Gaps = 51/269 (18%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++LK+ L G+ LE +++ LS P +Q++ N +A + + + ++ E Sbjct: 144 QQLKSKLSAVLGVKLESVSKN----ALSEFAGHHP-VVQMYLNWKKAEKRRQM-ITSIQE 197 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 M DG ++ + LGA TGR + F P N P Sbjct: 198 KMRPDGFVKASYMQLGAE-TGRMT--CFNPNNQQIPKDKQ-------------------- 234 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 R CV A +G +V AD +E R+ A +A ++ ++AF+ GEDL+ T Sbjct: 235 -------FRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFKDGEDLHTVT---- 283 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW- 475 A+ R I K L Y GAK + A+ + +++ T K S +W Sbjct: 284 -----AEAIGCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM-TLEEAQKVRS---DWF 334 Query: 476 EDAENFCRW-MQENHPEHAIEDLFIGTAC 503 ++ E +W +EN + F G C Sbjct: 335 QEFEGIAKWHKKENDKANNPNPRFKGKKC 363 >gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18] gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18] Length = 920 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 7/144 (4%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 +R L + G + P PR H +Q +T +SDP+ LQ I Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLSSSDPN-LQNIPVR 674 Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R C I EG AD + IE R++A ++ ++ ++AF G D++ T A+ + Sbjct: 675 TDDGKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAFREGHDIHRATAAKIW 734 Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441 +V +VT QR K + Y Sbjct: 735 HVDIDKVTDAQRKKAKQANFGIIY 758 >gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977] gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus] Length = 902 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 29/155 (18%) Query: 289 LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + ++ L++++ +DGR+ T Q + A TGR S QN+P + + E Sbjct: 612 VTVDGLLKSVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIPVRTEAGRE--------- 660 Query: 348 TSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +R + G ++L+ D + IE R++A ++ ++ ++AF TGE Sbjct: 661 ----------------IRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGE 704 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 DL+ AR+F V +VT + R K M L Y Sbjct: 705 DLHSFVAARAFGVPIDEVTAELRRRVKAMSYGLAY 739 >gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 892 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 29/153 (18%) Query: 291 LNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++TL+++ + DGR+ T +Q + TGR S QN+P Sbjct: 604 IDTLIKSTSDDGRIHTTYVQTVAG--TGRLSSTDPNLQNIP------------------- 642 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 P+ +I R + EG + L+ AD + IE RV+A +G++ + AF +G D Sbjct: 643 -IRTPEGRRI-----RDAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADF 696 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + T + F+V QVT QR+ K M L Y Sbjct: 697 HSMTASHVFDVPVEQVTPAQRSSVKQMNYGLAY 729 >gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254] gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254] Length = 370 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 6/139 (4%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY-VTTYARSFNVAPA 422 +R+ +A EG L+ D + IE RVLA ++ ++ +KA++ +DL+ +T F Sbjct: 130 IRTGFVAKEGHSLISFDYSQIELRVLAELSKDRHLVKAYQDNQDLHDLTARKIFFKTEED 189 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 ++++ +R+I KV+ ++ Y G F ++ G+ + + + T EE+ F Sbjct: 190 EISRHERSIAKVINFSILY--GKTPF-GLSKELGITVQEASQYITT--YFEEYPRVRKFL 244 Query: 483 RWMQENHPEHAIEDLFIGT 501 + E H + F GT Sbjct: 245 DIVTETAKLHGFVETFYGT 263 >gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2] gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2] Length = 956 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 10/133 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q +T +SDP+ LQ I +R +A +GKK+V D + I Sbjct: 679 RTGRVHTSYHQAVTATGRLSSSDPN-LQNIPVRSEEGRKIRQAFLAPKGKKIVACDYSQI 737 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ AFE G D++ T A + +V+ + R K + L Y G Sbjct: 738 ELRIMAHLSGDKGLTDAFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIY--G 795 Query: 445 AKAFQKMASTTGL 457 AF +A GL Sbjct: 796 MSAF-GLAKQLGL 807 >gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902] gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902] Length = 998 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 12/132 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I S +R + EG L+ AD + IE Sbjct: 707 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIEL 765 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ TG+D++ T AR + V+ D+R +GK + + Y GA Sbjct: 766 RILTHLSGEEVLQEAYSTGDDVHALT-ARLL-LDKDDVSADERRLGKTINFGVIYGMGA- 822 Query: 447 AFQKMASTTGLN 458 Q+ A TG++ Sbjct: 823 --QRFARETGVS 832 >gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304] gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304] Length = 976 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++++N SDGR+ T + A+ TGR S QN+P + E Sbjct: 687 VQTLMDSVNTSDGRIHTTFEQTVAA-TGRLSSTDPNLQNIPNRNVEGRE----------- 734 Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R+ + S+G L+ +D + +E R++A ++G++ ++AF +G D Sbjct: 735 --------------IRAAFVPSDGYLSLLSSDYSQVELRLMAHLSGDEALIEAFRSGADF 780 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + V Q+T DQR+ K M L Y Sbjct: 781 HKYVASLVYQVPLDQITPDQRSHIKAMSYGLAY 813 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H +Q +T +SDP+ LQ I +R IA G ++ AD + I Sbjct: 611 RQGRVHTSYNQAVTATGRLSSSDPN-LQNIPIRTDEGRRIREAFIAPPGCVILAADYSQI 669 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA ++ + AF ED++ T + F + P VT + R K + + Y G Sbjct: 670 ELRVLAHLSQDPVFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQG 729 Query: 445 AKAFQK 450 A + K Sbjct: 730 AFSLAK 735 >gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 964 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 PR R H +Q +T +S+P+ I I D +R I +G AD + I Sbjct: 686 PRTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 745 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ + AF +G D++ T A+ + V +VT D R K + Y Sbjct: 746 ELRIMAHLSKDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 802 >gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45] gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45] Length = 935 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGK +V D + IE R+LA MAG +AF G+D++ T + FNV + Sbjct: 695 IREAFVAPEGKTIVSLDYSQIELRILAHMAGIDALKEAFREGQDIHAMTASEMFNVPMEE 754 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 755 MTPEIRRQAKAINFGVIY 772 >gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205] gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205] Length = 899 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 32/216 (14%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLK--LNT 293 ++L+ LF+E GL +T + + L Q V + +R A LK ++ Sbjct: 554 KQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLGHLLRHRDVAKLKTTVDG 613 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+++++ DGR+ T A+ TGR S QN+P R+ E Sbjct: 614 LLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP--IRTEE---------------- 654 Query: 354 PDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ AD + IE R++A ++ + + AF +G D + T Sbjct: 655 -------GRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSADDVLIDAFNSGRDFHAAT 707 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + F V +VT DQR K M L Y G AF Sbjct: 708 ASSVFQVPVEEVTTDQRRKIKAMNYGLAY--GLSAF 741 >gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1] gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1] Length = 829 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 28/151 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ ++ GR+ G G + TGR S QNLP Sbjct: 550 VKALLKRIDETGRVHGNFIQTGTA-TGRLSSAEPNLQNLP-------------------- 588 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 SDP +S VR V A EG LV AD + +E R+LA ++ ++ ++AF GED++ Sbjct: 589 VSDP-----LSLRVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHT 643 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T F+ Q+T +R + K + + Y Sbjct: 644 ETAKHLFHT--RQITDRERRVAKTVNFGIIY 672 >gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS] gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS] Length = 920 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 32/170 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 F + A R A + ++ L+ ++ SDGR+ T Q + A TGR S QN+P Sbjct: 615 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 672 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 + + +R + +G +++ AD + IE R++A Sbjct: 673 TEAGRR-------------------------IRDAFVVGDGYTEVMTADYSQIEMRIMAH 707 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ + ++AF TGEDL+ +R+F+V +VT D R K M L Y Sbjct: 708 LSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAY 757 >gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] Length = 896 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 77/332 (23%), Positives = 136/332 (40%), Gaps = 45/332 (13%) Query: 140 ECLYDRN-KPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--SSKEQELWY-----LDQT 191 E LYD++ K +E E C V + ++L P+ + + EL+Y L + Sbjct: 446 EILYDKHGKRLQQEQDISSSEVCAAAVNAIYVLIQKLRPIIRDNGQDELYYEIELPLVEV 505 Query: 192 IND---RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + D RG+ VDV ++ +D L+ E+ + G + ++L LF + G Sbjct: 506 LADMELRGFKVDVEGLQAYSKEMDSRLVILENEI-YMQAGETFNINSPKQLGVILFEKLG 564 Query: 249 LHLEDLTET---TCQRVLS--SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L + T+T T VL S K + I + M+ + + L+ + DG+ Sbjct: 565 LPVGKKTKTGYSTNAEVLEQLSYKHEIVERILEYRQLMKLKSTYA---DGLLSVLEQDGK 621 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363 + + TGR S QN+P ++ ++ +PT+ D Sbjct: 622 IHSNFN-QTVTATGRISSTEPNLQNIPVKLEMGRKIRKVF--IPTN-----------QDY 667 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 V L+ AD + IE RVLA + + ++AF ED++ TT ++ F + P + Sbjct: 668 V-----------LLDADYSQIELRVLAHITDDSNMIEAFLKNEDIHTTTASKVFGIPPEE 716 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 V+ R+ K + + Y G + K T Sbjct: 717 VSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVT 748 >gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 833 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 556 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 615 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 616 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 672 >gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct] gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct] Length = 829 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 552 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 611 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 612 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 668 >gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] Length = 878 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 + H Q +T +SDP+ P+++ + +R + G V AD + IE R Sbjct: 603 GKIHSIFHQKVTATGRLSSSDPNLQNIPIRMPLGRAIRKVFVPDSGYVFVSADYSQIELR 662 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA MAG++ + A+ GED++ T ++ F V +VT R K + + Y G A Sbjct: 663 VLAHMAGDEHLIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNFGIVY--GISA 720 Query: 448 F 448 F Sbjct: 721 F 721 >gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] Length = 897 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGK-KLVVADLAG 383 P + H +Q +T +++P+ P+++ + +R + +G KLV AD + Sbjct: 618 PHTGKIHSSFNQTVTVTGRISSTEPNLQNIPIKLEMGRNIRKAFVPCDGNYKLVDADYSQ 677 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA + ++ + AF ED++ +T ++ F V +VT R+ K + + Y Sbjct: 678 IELRVLAHITDDENMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAVNFGIVYGI 737 Query: 444 GAKAFQK 450 G + K Sbjct: 738 GDFSLSK 744 >gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109] gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109] Length = 986 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 12/132 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I S +R + EG L+ AD + IE Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIEL 753 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ +G+D++ T AR + +V+ D+R +GK + + Y GA Sbjct: 754 RILTHLSGEEVLQEAYRSGDDVHALT-ARLL-LDKNEVSPDERRLGKTINFGVIYGMGA- 810 Query: 447 AFQKMASTTGLN 458 Q+ A TG++ Sbjct: 811 --QRFARETGVS 820 >gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] Length = 905 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 11/133 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEG-KKLVVADLAGIEA 386 +R H +Q+I + DP+ P++ + +R IA G + L+ AD + IE Sbjct: 628 TRIHTTYNQMIAATGRLSSVDPNLQNIPIRTLEGQQIRKAFIAGPGYESLMTADYSQIEM 687 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++ + ++AF +GEDL+ T A+ F+V V + R K M L Y G Sbjct: 688 RIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAVEPEHRRRIKAMSYGLAY--GLS 745 Query: 447 AF---QKMASTTG 456 AF Q++ TG Sbjct: 746 AFGLSQQLGIETG 758 >gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6] gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6] Length = 936 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG L+ D + IE R+LA MAG +AF G+D++ T + F+V A+ Sbjct: 696 IREAFVAGEGNVLLSLDYSQIELRILAHMAGIDALKQAFAEGQDIHAMTASEMFDVPMAE 755 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 756 MTPDIRRQAKAINFGVIY 773 >gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018] gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018] Length = 896 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 33/173 (19%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R I +G KLV D + IE R+LA + ++ ++AFE D++ T + F A Sbjct: 662 IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDLDIHYQTAVKIFGEENA- 720 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL------------------------NL 459 K++R I K + L Y G+K K+ T G+ ++ Sbjct: 721 --KEKRGIAKSINFGLLYGMGSK---KLGETLGIPSKEAKQYIDSYFEAFKSVKDYLKSI 775 Query: 460 NTFAHL---VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 FAH+ VKT + D + M+ + A+ LF G+A + +K A Sbjct: 776 EDFAHINGYVKTLLNRKRLFDFNSANAMMKAAYLREAVNTLFQGSAADLIKLA 828 >gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 908 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 32/170 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 F + A R A + ++ L+ ++ SDGR+ T Q + A TGR S QN+P Sbjct: 603 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 660 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 + + +R + EG +L+ AD + IE R++A Sbjct: 661 TEAGRR-------------------------IRDAFVVGEGYAELMTADYSQIEMRIMAH 695 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ + ++AF TGEDL+ +R+F+V +VT + R K M L Y Sbjct: 696 LSRDAGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGLAY 745 >gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus] Length = 832 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 555 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 614 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 615 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671 >gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca] Length = 750 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q IT +S P+ I S +R I G LV AD + IE R+ Sbjct: 476 RIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRI 535 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ E+ ++A+ T +D++ T F+ +T ++R +GK++ + Y GA+ F Sbjct: 536 LAHLSQEKVLIEAYNTNQDVHSLTAKLLFD--RDGITPEERRLGKIINFGVIYGMGAQRF 593 Query: 449 QK---MASTTG 456 + +++T G Sbjct: 594 AREVGVSATAG 604 >gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 538 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 261 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 320 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 321 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 377 >gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq polymerase 1 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New Orientation For The Structure-Specific Nuclease Domain gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus] Length = 832 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 555 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 614 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 615 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671 >gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 900 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G +V AD + IE RVLA ++ + + AF TG+D++V T F V A Sbjct: 664 IRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDVHVRTAMEIFGVDQAG 723 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQK 450 VT + R K + + Y G A K Sbjct: 724 VTAEMRRRSKTINFGVIYGMGESALAK 750 >gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55] gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55] Length = 930 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + V+ +QR K + L Y Sbjct: 711 IELRIMAHLSRDKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M] gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M] Length = 899 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 32/210 (15%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNT 293 ++L+ LF E G+ T+T + + L + F + A R + ++ Sbjct: 554 KQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDG 613 Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L+ ++ DGR+ T Q + A TGR S QN+P + + + Sbjct: 614 LLNSVADDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIRTDAGRQ-------------- 657 Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R + +G +L+ AD + IE R++A ++ ++ ++AF TGEDL+ Sbjct: 658 -----------IRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSF 706 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R+F V +VT + R K M L Y Sbjct: 707 VASRAFGVPIDEVTGELRRRVKAMSYGLAY 736 >gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c] gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c] Length = 923 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P P R H Q +SDP+ LQ I +R +A G+KL+ Sbjct: 637 LPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN-LQNIPIRTDDGRRIRRAFVAPSGRKLI 695 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D + IE R++A ++G+ + AFE+G D++ A F +VT ++R K + Sbjct: 696 ACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINF 755 Query: 438 ALGYQGGAKAF 448 L Y G AF Sbjct: 756 GLIY--GMSAF 764 >gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 906 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 29/155 (18%) Query: 289 LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + ++ L+ ++ SDGR+ T Q + A TGR S QN+P + + Sbjct: 616 VTVDGLLASVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIRTEAGRR--------- 664 Query: 348 TSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +R + +G +L+ AD + IE R++A ++ ++ ++AF TGE Sbjct: 665 ----------------IRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGE 708 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 DL+ +R+F V +VT + R K M L Y Sbjct: 709 DLHSFVASRAFGVPIGEVTAELRRRVKAMSYGLAY 743 >gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 887 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 36/246 (14%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A TL Q+ + KL ++LE YG L ++L LF + GL + T+T Sbjct: 508 ASTLIQLQNEFAVKL-KKLEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 566 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + + L++ + DGR+ LQ L A T Sbjct: 567 TSVEVLDQLKTQSPIVSKILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 623 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +++ + + S+PD + SC Sbjct: 624 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 662 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435 D + +E RVLA ++G+Q +AF+TG D++ T + F++ +P +VT R K + Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAV 719 Query: 436 ELALGY 441 + Y Sbjct: 720 NFGIVY 725 >gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex Wi Abasic Site gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna Pol In Complex With A Blunt-Ended Dna And Ddatp gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Ethylated Dttp gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Methylated Dttp gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidines gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidies Length = 540 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 263 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 322 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 323 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379 >gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 263 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 322 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 323 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379 >gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I From T. Aquaticus Bound To A PrimerTEMPLATE DNA Length = 539 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 262 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 321 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 322 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 378 >gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950] Length = 908 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 32/170 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 F + A R A + ++ L+ ++ SDGR+ T Q + A TGR S QN+P Sbjct: 603 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 660 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 + + +R + +G +L+ AD + IE R++A Sbjct: 661 TEAGRR-------------------------IRDAFVVGDGYSELMTADYSQIEMRIMAH 695 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ ++ ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 696 LSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAELRRRVKAMSYGLAY 745 >gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1] gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1] Length = 869 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 47/235 (20%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T Q +L + L P + RM S+ + L E + +DG++ T+ ++T Sbjct: 551 STSQDILEKIEGLHPIIPLIQKYRMLTKLSSTY-VKGLQEQVFADGKIH-TIYNQALTQT 608 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P R E +R I S L Sbjct: 609 GRLSSIEPNLQNIP--VRQEE-----------------------GKLIRKAFIPSHDY-L 642 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V D + IE R+LA +AG Q ++AF +D++ T A F V +VT + R K + Sbjct: 643 VTFDYSQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRRQAKAVN 702 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 + Y G F K++ G++L ++A+ F R E +PE Sbjct: 703 FGIIY--GMGEF-KLSQQIGVSL----------------KEAKEFIRRYFEEYPE 738 >gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] Length = 877 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 +R H + +Q IT +++P+ P+++ + +R I EG + AD + IE R Sbjct: 602 NRIHGKFNQTITATGRISSTEPNLQNIPVRMPLGREIRKVFIPKEGCVFIDADYSQIELR 661 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA M+ ++ + A+ +D++ T + F+V +VTK+QR+ K + + Y G + Sbjct: 662 ILAHMSDDKNLIDAYNHSKDIHAATASLVFHVPLEEVTKEQRSNAKAVNFGIVY--GISS 719 Query: 448 F 448 F Sbjct: 720 F 720 >gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] Length = 952 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 37/251 (14%) Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLT 255 + + +A +Q+ D+ R +DQ E + + L ++L+T LF E L Sbjct: 568 IGIDMARMDDQLADLARV-IDQAQEQ-AFAAIGHEVNLGSPKQLQTVLFEELQLPKTKKI 625 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS----DGRLRGTLQFL 311 ++ +S K L + F ++ A R A KL ++E++ DGR+ T Sbjct: 626 KSGYTTDAASLKNLLEKTGHEFLVQLMAHREAA-KLRQMLESLKKSVAEDGRIHTTYA-Q 683 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 + TGR S QN+P RS E VR + Sbjct: 684 NVAATGRISSNNPNLQNIP--IRSEE-----------------------GRRVRGIFVVG 718 Query: 372 EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 EG + L+ AD + IE R++A ++G+Q ++A++ GEDL+ + F+V +VT R+ Sbjct: 719 EGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSAMRS 778 Query: 431 IGKVMELALGY 441 K M L Y Sbjct: 779 KVKAMSYGLAY 789 >gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493] gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493] Length = 902 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q P R H +Q +T +++P+ LQ I +R IA G ++V Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736 Query: 438 ALGYQGGAKAF 448 L Y G +F Sbjct: 737 GLLY--GMSSF 745 >gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase Length = 543 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 266 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 325 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 326 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 382 >gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC polymerase 1 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus] Length = 834 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q T +SDP+ I + +R +A G LV D + I Sbjct: 557 PNTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQI 616 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G+D++ T + F V P V R K + + Y Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673 >gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a] gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a] Length = 924 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG +L+ AD + IE R++A ++ + ++AFE G D++ T A F + Sbjct: 685 IRRAFVAPEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEE 744 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT ++R K + L Y G AF +A G++ Sbjct: 745 VTPNERRAAKAINFGLMY--GMSAF-GLARNLGID 776 >gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331] gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331] Length = 902 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q P R H +Q +T +++P+ LQ I +R IA G ++V Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736 Query: 438 ALGYQGGAKAF 448 L Y G +F Sbjct: 737 GLLY--GMSSF 745 >gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 263 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 322 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 323 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379 >gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] Length = 902 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q P R H +Q +T +++P+ LQ I +R IA G ++V Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736 Query: 438 ALGYQGGAKAF 448 L Y G +F Sbjct: 737 GLLY--GMSSF 745 >gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 930 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + V+ +QR K + L Y Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638] gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638] Length = 930 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 LQ+ G ++ P P+ SR H Q + +++P+ LQ I Sbjct: 630 LQYRGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATGRLSSTEPN-LQNIPVRNEEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA + +V AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 689 RRIRQAFIAPKDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 VT DQR K + L Y G AF Sbjct: 749 DSVTNDQRRSAKAINFGLIY--GMSAF 773 >gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026] gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli UMN026] gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] Length = 928 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R I E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1] Length = 831 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R +A EG LV D + I Sbjct: 554 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGFLLVALDYSQI 613 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F G+D++ T + F V V R K + + Y Sbjct: 614 ELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAAKTVNFGVLY 670 >gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54] gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54] Length = 889 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLVVADLAGI 384 P R + +Q IT +S+P+ P+++ + +R + GK + AD + I Sbjct: 613 PETGRIYTSFNQTITATGRLSSSNPNMQNIPIRMEEGNRIRRAFVPEAGKVFLAADYSQI 672 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + RVLA +G+ +AF G+D++ T A F+V+ V + R + K + + Y G Sbjct: 673 DLRVLAHYSGDDALTRAFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVY--G 730 Query: 445 AKAF 448 AF Sbjct: 731 MSAF 734 >gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] Length = 930 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + V+ +QR K + L Y Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] Length = 902 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q P R H +Q +T +++P+ LQ I +R IA G ++V Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736 Query: 438 ALGYQGGAKAF 448 L Y G +F Sbjct: 737 GLLY--GMSSF 745 >gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 933 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 28/215 (13%) Query: 259 CQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------EAMNS 300 +R+L++ +K T A + FN +++A LKL +V EA+ Sbjct: 565 SKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIAD 624 Query: 301 DGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L R L++ G ++ P P+ R H Q +SDP+ LQ Sbjct: 625 QHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN-LQN 683 Query: 360 I------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T Sbjct: 684 IPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATA 743 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A F V+ D+R K + L Y G AF Sbjct: 744 AEVFGRTIDTVSGDERRAAKAINFGLMY--GMSAF 776 >gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1] gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1] Length = 929 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 27/151 (17%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + +N+D GR+ + GA+ TGR + QN+P RS E Sbjct: 642 DALQDHINADTGRVHTSYSIAGAN-TGRLASTDPNLQNIP--IRSEE------------- 685 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R +A GK LV D + IE R+LA +AG AF+ G+D++ Sbjct: 686 ----------GRRIREAFVAEPGKVLVALDYSQIELRILAHIAGIDALKDAFKDGQDIHA 735 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + FNV ++T D R K + + Y Sbjct: 736 ATASEMFNVPLEEMTPDVRRQAKAINFGVIY 766 >gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 927 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 649 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 707 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + V+ +QR K + L Y Sbjct: 708 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 765 Query: 444 GAKAF 448 G AF Sbjct: 766 GMSAF 770 >gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] Length = 976 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q T +S+P+ I S +R + + KL+ AD + IE Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIE 742 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A E+ + AF +D++ T F +++ D+R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGI 800 Query: 446 KAFQKMASTTGLN 458 K F A +TG++ Sbjct: 801 KKF---ARSTGVS 810 >gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916] gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916] Length = 1007 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 10/131 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ I S +R + EG +L+ AD + IE R Sbjct: 716 GRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQEGWQLLSADYSQIELR 775 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +L ++GE+ +A+ G+D++ T AR + +V+ D+R +GK + + Y GA Sbjct: 776 ILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LEKDEVSADERRLGKTINFGVIYGMGA-- 831 Query: 448 FQKMASTTGLN 458 Q+ A TG++ Sbjct: 832 -QRFARETGVS 841 >gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] Length = 882 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASE-GKKLVVADLAG 383 P+ R H Q +T +++P+ P+++ S +R + + G ++ AD + Sbjct: 601 PQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVFVPRQKGNLILTADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA M+ + L+AF G+D++ T A F V +VT D R+ K + + Y Sbjct: 661 IELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVNFGIVY 718 >gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] Length = 876 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLA 382 P R + +Q +T +SDP+ LQ I VR+ EG L+ AD + Sbjct: 597 PETGRVYTNFNQTVTATGRLSSSDPN-LQNIPVRTEEGRAVRALFEPGEGYDVLLSADYS 655 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA M+G+ + AF G+D++ T A F V VT +QR K + + Y Sbjct: 656 QIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNFGIVY 714 >gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] Length = 854 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 361 SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 SD ++S +I E G+ V AD + +E RVLA ++GE+ F +G D++ T + F V Sbjct: 613 SDRIKSSLIPREKGRCFVAADYSQVELRVLAHISGEKRLADIFRSGRDIHTETASMVFGV 672 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448 + VTK+ R K++ L Y G AF Sbjct: 673 DSSMVTKELRRSAKMVTFGLLY--GMSAF 699 >gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] Length = 871 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R I EG + V AD + IE R Sbjct: 596 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEEGYRFVDADYSQIELR 655 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA +G++ ++A++ D++ T ++ F++ +VT QR K + + Y Sbjct: 656 VLAHCSGDEHLIQAYKEQSDIHRITASQVFHIPFDEVTPQQRRNAKAVNFGIVY 709 >gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 694 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 417 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 475 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ + ++AF +GEDL+ T ++ F V P V + R K M L Y G Sbjct: 476 LRVMAHLSEDAGLIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGLAY--GL 533 Query: 446 KAF 448 AF Sbjct: 534 SAF 536 >gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 930 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + V+ +QR K + L Y Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7] Length = 877 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H + +Q IT +++P+ P+++ + +R + E V AD + I Sbjct: 599 PDDQRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPKEDCIFVNADYSQI 658 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA MAG++ ++A++ +D++ T ++ F+ +VT QR+ K + + Y Sbjct: 659 ELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVFHTPFDEVTPAQRSNAKAVNFGIVY 715 >gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042] Length = 928 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R I E +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22] gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22] Length = 930 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA E +V AD + Sbjct: 652 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + V+ +QR K + L Y Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12] gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 941 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 PR R H +Q +T +S+P+ I I D +R I +G AD + I Sbjct: 663 PRTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 722 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ + AF +G D++ T A+ + V +VT D R K + Y Sbjct: 723 ELRIMAHLSKDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 779 >gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] Length = 887 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 36/246 (14%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A TL Q+ + KL +ELE Y L ++L LF + GL T+T Sbjct: 508 ASTLIQLQNEFAVKL-KELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 566 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + + L++ + SDGR+ LQ L A T Sbjct: 567 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQSDGRVHTRYLQTLTA--T 623 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P +R+ EE QI + S+PD + SC Sbjct: 624 GRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VPSEPDG------YIFSC--------- 662 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435 D + +E RVLA ++G+Q +AF+TG D++ T + F++ +P +VT R K + Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAV 719 Query: 436 ELALGY 441 + Y Sbjct: 720 NFGIVY 725 >gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01] gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01] Length = 682 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 1/127 (0%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARV 388 P R H QI P+ Q+ D +R EG+ ++ AD + IE R+ Sbjct: 410 PATGRIHPSWQQIGAETGRMACRKPNLQQVPRDPALRRAFRPKEGRVMLKADFSQIELRI 469 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A +A E L+AF G+DL+ T + +V K+ R + K + L Y GA+ Sbjct: 470 AAAIAKEGRMLRAFREGKDLHALTASLVLGKPLEEVGKEDRQLAKALNFGLLYGLGAEGL 529 Query: 449 QKMASTT 455 ++ A T Sbjct: 530 RRYALTA 536 >gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] Length = 931 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 8/133 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCVIASEGKKLVVADLA 382 PR R H Q +T ++ P+ LQ I S ++ V E L+ AD + Sbjct: 652 PRTGRIHTTFMQAVTATGRLSSNQPN-LQNIPIRTPRGSQIRKAFVPRDENYTLLSADYS 710 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ E ++AF G+D++ +T A+ F V VTK+QR+ K + + Y Sbjct: 711 QIELRIIAALSEETHMIEAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYG 770 Query: 443 GGAKAFQKMASTT 455 A + S + Sbjct: 771 VSAIGLSQQTSLS 783 >gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus] Length = 554 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T +SDP+ I + +R IA EG LV D + I Sbjct: 277 PRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQI 336 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 337 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRTAKTINYGVLY 393 >gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] Length = 861 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 31/170 (18%) Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++ +GR+ T G + TGR S QN+P +R++E Sbjct: 584 LSINGRIHTTYNQTGTA-TGRLSSSNPNLQNIP--TRTYE-------------------- 620 Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R IAS+G KLV D + IE RVLA ++ ++ + A++ DL+ T + F Sbjct: 621 ---GTKIREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARKIF 677 Query: 418 NVA-PAQVTKDQRAIGKVMELALGYQ----GGAKAFQKMASTTGLNLNTF 462 + +V+K QR I KV+ ++ Y G +K + S L +NT+ Sbjct: 678 MLKDDEKVSKTQRNIAKVINFSVLYGKTPFGLSKELKITVSDAKLYINTY 727 >gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] Length = 902 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P Q P R H +Q +T +++P+ LQ I +R IA G ++V Sbjct: 618 LPVQVHPASRRIHTSYNQTVTSTGRLSSNNPN-LQNIPIRTEEGRKIRRAFIAPPGFQMV 676 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 677 AADYSQVELRIIAHVSKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736 Query: 438 ALGYQGGAKAF 448 L Y G +F Sbjct: 737 GLLY--GMSSF 745 >gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC BAA-286] Length = 931 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 P + H +Q +T +S+P+ I I D +R IA E AD + I Sbjct: 653 PLDDKLHTSYNQTVTATGRLSSSNPNLQNIPIRDAQGKEIRKAFIADEACIFFSADYSQI 712 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ + + AF +GED++ T A+ + + ++VT D R K + Y Sbjct: 713 ELRIMAHLSQDPTMIDAFNSGEDIHAATAAKIYKIPISEVTGDMRRKAKTANFGIIY 769 >gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505] gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505] Length = 946 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 31/159 (19%) Query: 288 VLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 +KL VE A+ +DGR+ T Q A+ TGR S QN+P HEE +I Sbjct: 651 AIKLRQTVEGLRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIPA---RHEEGMRI- 705 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF 402 R EG + L+ AD + IE R++A ++ +Q ++AF Sbjct: 706 ---------------------REAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAF 744 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +GEDL+ A + VT QR+ K M L Y Sbjct: 745 RSGEDLHRYVAALVHGIEVEDVTAQQRSHVKAMSYGLAY 783 >gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] Length = 887 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 36/246 (14%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A TL Q+ + KL +ELE Y L ++L LF + GL T+T Sbjct: 508 ASTLIQLQNEFAVKL-KELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 566 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + + L++ + SDGR+ LQ L A T Sbjct: 567 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQSDGRVHTRYLQTLTA--T 623 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P +R+ EE QI + S+PD + SC Sbjct: 624 GRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VPSEPDG------YIFSC--------- 662 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435 D + +E RVLA ++G+Q +AF+TG D++ T + F++ +P +VT R K + Sbjct: 663 ---DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAV 719 Query: 436 ELALGY 441 + Y Sbjct: 720 NFGIVY 725 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 9/130 (6%) Query: 326 PQNLPRPS-RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV- 378 PQ + R + R H +Q +T +++P+ I + +R I S+ L++ Sbjct: 674 PQLVNRSTGRIHTSFNQAVTATGRLSSTNPNLQNIPVRDDMGRRIRKAFIPSDDDHLLLS 733 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + +E R++A ++G++ + AFE GED++ T A+ FN +VT ++R K Sbjct: 734 ADYSQVELRLMAHLSGDESLIAAFEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFG 793 Query: 439 LGYQGGAKAF 448 + Y G AF Sbjct: 794 IIY--GISAF 801 >gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1] gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1] Length = 906 Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H QI+ ++DP+ LQ + +R + EG + L+ AD + IE Sbjct: 629 GRVHTSFSQIVAATGRLSSTDPN-LQNVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 687 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ ++AF +GEDL+ T ++ F V +V + R K M L Y G Sbjct: 688 LRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERGEVDPEMRRKIKAMSYGLAY--GL 745 Query: 446 KAF 448 AF Sbjct: 746 SAF 748 >gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a] gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a] Length = 884 Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 11/132 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 R H +Q+I ++DP+ LQ I R+ V+ + L+ AD + IE Sbjct: 607 GRIHTTFNQMIAATGRLSSTDPN-LQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIE 665 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++G++ ++AF +GEDL+ A +F + ++V + R K M L Y G Sbjct: 666 MRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAMSYGLAY--GL 723 Query: 446 KAFQKMASTTGL 457 AF +AS G+ Sbjct: 724 SAF-GLASQLGI 734 >gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] Length = 976 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q T +S+P+ I S +R + + KL+ AD + IE Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIE 742 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A E+ + AF +D++ T F +++ D+R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGI 800 Query: 446 KAFQKMASTTGLN 458 K F A +TG++ Sbjct: 801 KKF---ARSTGVS 810 >gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708] gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708] Length = 982 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 7/173 (4%) Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ +++ G + +++ +S+ P P+ R H + +Q T +S+P Sbjct: 654 LQEVDNTGFVDAIIEYRTSSKLKSTYVDALPALVHPQSQRLHTDFNQTATSTGRLSSSNP 713 Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I S +R + G +V AD + IE R+LA ++ E ++A++ ED++ Sbjct: 714 NLQNIPIRTAFSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPVLVQAYKQNEDIH 773 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 T F +VT ++R K + + Y G+ F + N N F Sbjct: 774 TVTAKLVFE--KDEVTSEERRFAKTINFGVIYGMGSLKFARSTGVDKANANEF 824 >gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga] gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva] Length = 1786 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R C +A +G K V+AD + IE R+ A +A + ++A++ DL+ T + N V Sbjct: 1553 RECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQKVDLHSLTASILKNKNINDV 1612 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 K++R + K + L + G + +M + TG NL Sbjct: 1613 NKEERQLAKAVNFGLIF-GMSINGLRMYAETGYNL 1646 >gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39] Length = 959 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q IT +S P+ I S +R I G LV AD + IE R+ Sbjct: 685 RIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRI 744 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ E+ ++A+ T +D++ T F+ +T ++R +GK++ + Y GA+ F Sbjct: 745 LAHLSQEKVLIEAYNTNQDVHSLTAKLLFD--RDGITPEERRLGKIINFGVIYGMGAQRF 802 Query: 449 QK---MASTTG 456 + +++T G Sbjct: 803 AREVGVSATAG 813 >gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] Length = 932 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 R H +Q+I ++DP+ LQ I R+ V+ + + L+ AD + IE Sbjct: 655 GRVHTTFNQMIAATGRLSSADPN-LQNIPVRTAEGRQIRRAFVVGAGYESLLTADYSQIE 713 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++G++ + AF +GEDL+ A++F + +V + R K M L Y G Sbjct: 714 MRIMAHLSGDKGLIGAFASGEDLHTFVAAQAFGIPVDEVDPELRRRIKAMSYGLAY--GL 771 Query: 446 KAF 448 AF Sbjct: 772 SAF 774 >gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470] gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470] Length = 858 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLA 382 P R H +Q +T +SDP+ LQ I +RS + G + +D + Sbjct: 579 PETGRIHTSFNQTVTATGRLSSSDPN-LQNIPVRTAEGRQIRSLFVPGPGYDCFISSDYS 637 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E RVLA M+G++ ++AF ED++ T A + +VT +QR+ K + + Y Sbjct: 638 QVELRVLAHMSGDESLIRAFRNKEDIHRRTAAEVLGIPFEEVTSEQRSHAKAVNFGIIY 696 >gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] Length = 887 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 27/152 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L+ ++ DGR+ T + AS TGR S QN+P + + ++ Sbjct: 601 LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTDAGKK------------ 647 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 648 -------------IRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLH 694 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ F+V +VT + R K M L Y Sbjct: 695 NYVGSKVFDVGIDEVTPELRRRVKAMSYGLAY 726 >gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] Length = 864 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ I I +R +A S L+ D + IE R Sbjct: 589 RIHSNFNQTITATGRISSTEPNLQNIPVKTDIGRKIRGVFVAESPEHVLLSGDYSQIELR 648 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA ++G++ ++AF GED++ T + F V P QVT R K + + Y Sbjct: 649 VLAHLSGDEGLIEAFIKGEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNFGIIY 702 >gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603] gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603] Length = 893 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 29/156 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++++ DGR+ T Q A+ TGR S QN+P + + Sbjct: 608 LLKSVADDGRVHTTFQQTVAA-TGRLSSTDPNLQNIPIRTETGRR--------------- 651 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG L+ AD + IE R++A ++ + + AF+ GEDL+ Sbjct: 652 ----------IRQGFVVGEGLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGEDLHNFV 701 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 AR F V+ +VT R+ K M L Y G AF Sbjct: 702 GARVFGVSIDEVTPQMRSKVKAMSYGLAY--GLSAF 735 >gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] Length = 924 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG +L+ AD + IE R++A ++ + ++AFE G D++ T A F + Sbjct: 685 IRRAFVAPEGCQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEE 744 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT ++R K + L Y G AF +A G++ Sbjct: 745 VTPNERRAAKAINFGLMY--GMSAF-GLARNLGID 776 >gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 887 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 27/152 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L+ ++ DGR+ T + AS TGR S QN+P + + ++ Sbjct: 601 LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTDAGKK------------ 647 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 648 -------------IRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLH 694 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ F+V +VT + R K M L Y Sbjct: 695 NYVGSKVFDVGIDEVTPELRRRVKAMSYGLAY 726 >gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] Length = 908 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 37/197 (18%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQFLG 312 +T + VL +KL +++ + + + A LK NT V+A+ +S RL T +G Sbjct: 587 STDEEVL---EKLKSDGVEIASYILEYRKYAKLK-NTYVDALPKLVDSKDRLHTTFNQIG 642 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P ++ E + +R IA Sbjct: 643 TT-TGRLSSSNPNLQNIP--VKTDEGMK-----------------------IRQGFIADS 676 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAI 431 G L+ D + IE RVLA ++ ++ + A++ EDL+ T + F + +V+++QR I Sbjct: 677 GNVLMGIDYSQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIFELGEGEEVSREQRII 736 Query: 432 GKVMELALGYQGGAKAF 448 K + ++ Y G AF Sbjct: 737 AKTINFSIIY--GKTAF 751 >gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC 35316] gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316] Length = 930 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 LQ+ G ++ P P+ R H Q + ++DP+ LQ I Sbjct: 630 LQYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAATGRLSSTDPN-LQNIPVRNEEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA + +V AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 689 RRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGQDIHRATAAEVFGLPL 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 749 ESVTNEQRRSAKAINFGLIY--GMSAF 773 >gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8] gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8] Length = 857 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 26/160 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +++L++ + +DGR+R + +RTGR S QN+P Sbjct: 570 VDSLLKEVEADGRVRSVFK-QTETRTGRISSTEPNMQNIPVRKE---------------- 612 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R +A +G + AD + IE RVLA + G++ K F G D++ Sbjct: 613 ---------IGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIHT 663 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 T ++ F + V + R+ K + + Y GA + K Sbjct: 664 MTASQVFGIPADAVLPEMRSAAKAVNFGIIYGIGAFSLSK 703 >gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] Length = 899 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 36/181 (19%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L+++++ DGR+ T A+ TGR S QN+P R+ E Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP--IRTEE------------- 654 Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + EG + L+ AD + IE R++A ++ + ++AF +G D + Sbjct: 655 ----------GRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFH 704 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---QKMASTT----GLNLNTF 462 T + F V VT DQR K M L Y G AF Q++ + GL N F Sbjct: 705 AATASSVFTVEVGDVTADQRRKIKAMNYGLAY--GLSAFGLSQQLGISAEEARGLMENYF 762 Query: 463 A 463 A Sbjct: 763 A 763 >gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2] gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2] Length = 888 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 11/125 (8%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG+ L+ D + IE R+LA + + L+AF+ G D+++ T + F A Sbjct: 653 IRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQKGRDIHMETAIKLFGKEHA- 711 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP-----EEWEDA 478 K++R I K + L Y G++ K+A T G++ ++++ A E Sbjct: 712 --KEKRNIAKSINFGLIYGMGSR---KLAETLGISTKEAKAIIESYFASFPTVKSYLESV 766 Query: 479 ENFCR 483 ENF + Sbjct: 767 ENFAK 771 >gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] Length = 976 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q T +S+P+ I S +R + + KL+ AD + IE Sbjct: 683 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIE 742 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A E+ + AF +D++ T F +++ D+R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGI 800 Query: 446 KAFQKMASTTGLN 458 K F A +TG++ Sbjct: 801 KKF---ARSTGVS 810 >gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)] Length = 1018 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T ++DP+ LQ I +R IA EG+ L+ AD + IE R Sbjct: 735 RVHTSYHQALTSTGRLSSTDPN-LQNIPIRTKTGRLIRQAFIAPEGRVLLAADYSQIELR 793 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A +G+ KAF G D++ T A + +VT +R K + L Y G A Sbjct: 794 LMAHFSGDANLTKAFNEGLDIHTATAAEVLGKSVDEVTPTERRNAKAINFGLLY--GMSA 851 Query: 448 F 448 F Sbjct: 852 F 852 >gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] Length = 924 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG +L+ AD + IE R++A ++ + + AFE G D++ T A F + Sbjct: 685 IRRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLVGAFEQGADVHRATAAEVFGRTLEE 744 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT ++R K + L Y G AF +A G++ Sbjct: 745 VTPNERRAAKAINFGLMY--GMSAF-GLARNLGID 776 >gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489] gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489] Length = 929 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +RS A G L+ AD + IE VLA ++G++ AF G D++ +T A + ++P Q Sbjct: 690 IRSAFTAVPGTVLISADYSQIELVVLAHLSGDKNLCSAFINGIDVHKSTAALIYGISPEQ 749 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449 V +QR K + + Y G AF+ Sbjct: 750 VKPEQRRFAKTVNFGVMY--GMSAFR 773 >gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] Length = 911 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIAS-EGKKLVVADLA 382 P S+ H Q +T + DP+ +Q I D +R + S EG ++ +D + Sbjct: 631 PDDSKIHTRYLQTLTQTGRLSSVDPN-MQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYS 689 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 IE RVLA + G++ KAFE+GED++ T F ++ Q +T DQR K + + Y Sbjct: 690 QIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 749 >gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5] gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5] Length = 909 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 36/181 (19%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L+++++ DGR+ T A+ TGR S QN+P R+ E Sbjct: 621 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP--IRTEE------------- 664 Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R + EG + L+ AD + IE R++A ++ + ++AF +G D + Sbjct: 665 ----------GRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFH 714 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---QKMASTT----GLNLNTF 462 T + F V VT DQR K M L Y G AF Q++ + GL N F Sbjct: 715 AATASSVFTVEVGDVTADQRRKIKAMNYGLAY--GLSAFGLSQQLGISAEEARGLMENYF 772 Query: 463 A 463 A Sbjct: 773 A 773 >gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] Length = 893 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 36/223 (16%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD--PLQIISDC---VRSCVIASEGKKLVVADLAGI 384 P R H +Q + +SDP+ + I D +R +A GK LV AD + I Sbjct: 615 PETKRVHTSFNQTVAATGRLSSSDPNLQNIPIRGDAGKNIRKGFMAGSGKILVAADYSQI 674 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY--- 441 E RV A + + + AF+ +D++ T +VT + R I K + + Y Sbjct: 675 ELRVFAHYSQDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFGIIYGMG 734 Query: 442 -------------------------QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 G K F++ A T L L + Sbjct: 735 PQKLSEELSISKEAAQDYINAYYDRYKGVKRFKEKAIETALEKGYVTTLFNRRRYLPDIS 794 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 N R E A+ GTA + +KKA + H+R++E Sbjct: 795 HNNNRIRSEAE---RMAVNTPIQGTAADLIKKAMIEIHNRLTE 834 >gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N] gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N] Length = 904 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC 363 L++ G S+ P P R H Q +SDP+ P++ ++ Sbjct: 604 LEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTLAGR 663 Query: 364 -VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 VR +A LV AD + IE R++A ++ + +AF GED++ T A F V Sbjct: 664 RVREAFVADGDGLLVSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATAAEVFGVPLP 723 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +VT +QR K + L Y G F +AS G+ Sbjct: 724 EVTSEQRRAAKAINFGLIY--GMGVF-GLASNLGIT 756 >gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] Length = 912 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 34/213 (15%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT--- 293 ++L+T LF E G+ +T + LT + F +++A R A T Sbjct: 563 KQLQTVLFDELGMPKTKKIKTGFSTDAEALADLTTKHPHPFLLQLQAYRDATKLRQTVEG 622 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++++ SD R+ T + TGR S QN+P RS E Sbjct: 623 LIKSIGSDTRVHTTYA-QNVAATGRLSSNNPNLQNIP--IRSEE---------------- 663 Query: 354 PDPLQIISDCVRSCVIASEG-----KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R + + + L+ AD + IE R++A ++G++ ++AF+ GEDL Sbjct: 664 -------GRRIRGAFVVGQKSTKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDL 716 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + FNV P +VT R+ K M L Y Sbjct: 717 HRFVGSHIFNVEPQEVTSAMRSKVKAMSYGLVY 749 >gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C] gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C] Length = 483 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 29/180 (16%) Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 T + V R R + + LV+++ +DGR+ + A+ TGR S QN+ Sbjct: 174 TDHELPVIMLRHREQAKLRVTVEGLVKSIAADGRVHTSFSQTTAA-TGRLSSTDPNLQNV 232 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388 P R+ E +R + EG + L+ AD + IE RV Sbjct: 233 P--VRTDE-----------------------GRAIRRGFVVGEGYESLMTADYSQIELRV 267 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ ++AF +GEDL+ T ++ F V +QV + R K M L Y G AF Sbjct: 268 MAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERSQVDAEMRRKIKAMSYGLAY--GLSAF 325 >gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] Length = 887 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 35/230 (15%) Query: 220 QELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA 273 ++LE YG L ++L LF + GL + T+T T VL K +P Sbjct: 523 KKLEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIV 582 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + R A + + L++ + DGR+ LQ L A TGR S QN+P Sbjct: 583 SKILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--TGRLSSVDPNLQNIPTR 639 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +++ + + S+PD + SC D + +E RVLA + Sbjct: 640 TEEGKQIRKAF------VPSEPDG------YIFSC------------DYSQVELRVLAHV 675 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 +G+Q +AF+TG D++ T + F++ +P +VT R K + + Y Sbjct: 676 SGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVY 725 >gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] Length = 798 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 38/214 (17%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP---------QAIQVFNNRMRASRSA 287 ++L+ +LF E G+ T+T S + + P + I V+ + + Sbjct: 452 KQLQVFLFEELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLSTY 511 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 L L V A DGR+ + + G + TGR S QN+P + +L Sbjct: 512 ALPLKDYVLA---DGRIHSSFRQTGTA-TGRLSSVNPNMQNIPMKGKWGVKL-------- 559 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 R I EG V D + IE R+LA + G++ +A+ ED Sbjct: 560 -----------------REAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNED 602 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ T + F VAP +V R + K + + Y Sbjct: 603 IHTKTASGIFGVAPEKVDSGMRRLAKAVNFGILY 636 >gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] Length = 911 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIAS-EGKKLVVADLA 382 P S+ H Q +T + DP+ +Q I D +R + S EG ++ +D + Sbjct: 631 PDDSKIHTRYLQTLTQTGRLSSVDPN-MQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYS 689 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 IE RVLA + G++ KAFE+GED++ T F ++ Q +T DQR K + + Y Sbjct: 690 QIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 749 >gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1] gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1] Length = 903 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIAS-EGKKLVVADLA 382 P S+ H Q +T + DP+ +Q I D +R + S EG ++ +D + Sbjct: 623 PDDSKIHTRYLQTLTQTGRLSSVDPN-MQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYS 681 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 IE RVLA + G++ KAFE+GED++ T F ++ Q +T DQR K + + Y Sbjct: 682 QIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 741 >gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] Length = 925 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 30/209 (14%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR---SAVLKLNT 293 ++L+ LF + L T+T + ++L + F + + A R V L+ Sbjct: 580 KQLQEVLFDKLELSKTKKTKTGYSTAAKAIERLAEKHPHPFLDHLLAHREYQKRVSTLDG 639 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++A+ SDGR+ T A+ TGR S QN+P + EE QI Sbjct: 640 LIKAIASDGRIHTTFN-QTATATGRLSSTDPNLQNIPVRT---EEGRQI----------- 684 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 R+ + EG + L+ AD + IE RV+A + ++ ++A+ +GEDL+ Sbjct: 685 -----------RAAFVPGEGYEALLTADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHNFV 733 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ F+V +VT + R K + L Y Sbjct: 734 GSQVFDVPVNEVTPELRRRVKALSYGLVY 762 >gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035] gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035] Length = 934 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A+ G +LV D + IE R+LA +AG + +AF G D++ T + FNV A+ Sbjct: 694 IREAFVAAPGNRLVSLDYSQIELRILAHVAGIETLKQAFRDGHDIHAMTASEMFNVPLAE 753 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 754 MTPEIRRQAKAINFGVIY 771 >gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6] gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6] Length = 885 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q IT +++P+ P +I + +R C + +G V AD + IE R Sbjct: 610 GRIHTTFKQTITATGRISSTEPNLQNIPTRIELGRQIRKCFVPQDGFVFVDADYSQIELR 669 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA ++G++ ++A+ ED++ T ++ F+V ++VT R K + + Y Sbjct: 670 VLASLSGDEKLIEAYRDAEDIHAITASQVFHVPLSEVTPLMRRNAKAVNFGIVY 723 >gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612] Length = 421 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 10/134 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q T +S+P+ I S +R + + KL+ AD + IE Sbjct: 128 KTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIE 187 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A E+ + AF +D++ T F ++ D+R +GK + + Y G Sbjct: 188 LRILAHLADEEILINAFHKNDDIHSLTAKLIFE--KEVISSDERRVGKTINFGVIYGMGI 245 Query: 446 KAFQKMASTTGLNL 459 K F A +TG+++ Sbjct: 246 KKF---ARSTGVSI 256 >gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 932 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++G++ L AF +GEDL+ + A + V P +VT QR+ K Sbjct: 704 LMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKAT 763 Query: 436 ELALGY 441 L Y Sbjct: 764 SYGLAY 769 >gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] Length = 945 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVI-ASEGKKLVVADLA 382 PR R H + Q++T + DP+ LQ I +R+ + ASE ++ AD + Sbjct: 667 PRDGRIHTQFHQMLTATGRLASQDPN-LQNIPVRTEQGRLIRTAFVPASEKYTMLSADYS 725 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G+ AF G D++ T AR + + QV R K + + Y Sbjct: 726 QIELRIMAALSGDPAMCGAFREGRDIHTETAARVYGIPRDQVDAVMRRAAKTVNFGIIY- 784 Query: 443 GGAKAF 448 G AF Sbjct: 785 -GISAF 789 >gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22] Length = 908 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 32/216 (14%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L+ LF E GL T+T T L+ T + V R R + + Sbjct: 563 KQLQEVLFGELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTVEG 622 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DGR+ + A+ TGR S QN+P R+ E Sbjct: 623 LIKTIAADGRIHTSFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 663 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T Sbjct: 664 -------GRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTA 716 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A+ F V + V + R K M L Y G AF Sbjct: 717 AAQVFGVEQSAVDAEMRRKIKAMSYGLAY--GLSAF 750 >gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium] Length = 283 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 46/81 (56%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ V E L+ AD + IE R++A ++G+ +AF+ G+D++ T A+ +N+ A V Sbjct: 43 KAFVPRDENHLLISADYSQIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNIEEADV 102 Query: 425 TKDQRAIGKVMELALGYQGGA 445 TK+ R K + + Y GA Sbjct: 103 TKEMRYKAKSVNFGIIYGQGA 123 >gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 893 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 27/149 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ A+ +DGR+ T Q A+ TGR S QN+P +R+ E + Sbjct: 608 LISAVGADGRIHTTFQQTVAA-TGRLSSTEPNLQNIP--ARTAEGMR------------- 651 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + G L+ AD + IE R++A M+ ++ ++AF++GEDL+ T Sbjct: 652 ----------IRGAFVPGTGFDYLLTADYSQIEMRLMAHMSKDEALIEAFKSGEDLHRTM 701 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 A F V +VT R+ K L Y Sbjct: 702 AAMVFAVPVEEVTPALRSQIKATSYGLAY 730 >gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] Length = 930 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/312 (20%), Positives = 131/312 (41%), Gaps = 28/312 (8%) Query: 145 RNKPNHREA-WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 + + N R+ L EY D +T ++ ++ EPL + L + V+ L Sbjct: 482 KKQGNMRDVEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQE--------VEFPL 533 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 + L++I E+ + +++ L+ + + L+ ++ + G+ + VL Sbjct: 534 VYVLSEI---EKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVL 590 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 +L P+A + + + +L L + + R LQ L ++ G + Sbjct: 591 FDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDILDFR-QLQKLKSTYVDALPGLI 649 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376 P L H +Q + +++P+ LQ I + ++ + SE + Sbjct: 650 NPTTGL-----IHTSYNQAVAATGRLSSTNPN-LQNIPIRTERGREVRKAFIPRSENNVI 703 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++ + L+AF+ G D++ T A+ + + +V+ DQR K + Sbjct: 704 LSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVN 763 Query: 437 LALGYQGGAKAF 448 + Y G AF Sbjct: 764 FGIIY--GQSAF 773 >gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 942 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISD----CVRSCVIASEGKKLVVADLAGI 384 P+ R H +Q I +++P+ I I D +R IA +G +++ D + I Sbjct: 664 PKTKRIHTSYNQTIAATGRLSSTNPNLQNIPIKDEEGRLLRKGFIAKKGYEILSLDYSQI 723 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A + + + A+ +G D++ T A F V QVT D R KV+ ++ Y G Sbjct: 724 ELRIMAHFSNDPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIY--G 781 Query: 445 AKAF 448 +F Sbjct: 782 VTSF 785 >gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 885 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 5/111 (4%) Query: 336 HEELDQIITHLPTSITSDPD--PLQIISD---CVRSCVIASEGKKLVVADLAGIEARVLA 390 H +Q IT +++P+ + I +D +R ++SEG LV AD + IE RVLA Sbjct: 613 HSHFNQTITSTGRISSTNPNLQNIPIKTDEGKLIRKAFLSSEGCVLVDADYSQIELRVLA 672 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ ++ + AFE +D++ T A+ F V VT R+ K + + Y Sbjct: 673 DISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFGIVY 723 >gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] Length = 932 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++G++ L AF +GEDL+ + A + V P +VT QR+ K Sbjct: 704 LMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKAT 763 Query: 436 ELALGY 441 L Y Sbjct: 764 SYGLAY 769 >gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] Length = 921 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ H +Q +T +S+P+ LQ I +R I G AD + Sbjct: 643 PQTGHLHTTFNQAVTSTGRLSSSNPN-LQNIPVRGEDGREIRKAFIPEAGDVFFSADYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + ++AF+ GED++ T AR F ++V++D+R K + Y Sbjct: 702 IELRIMAHLSKDPHLIEAFKKGEDIHAATAARIFKKDLSEVSRDERRKAKTANFGIIY-- 759 Query: 444 GAKAF 448 G AF Sbjct: 760 GISAF 764 >gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] Length = 885 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R C I + L V AD + IE R+LA ++G+ + AF +G D + T AR F V Sbjct: 645 IRECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFHSATAARVFGVPVE 704 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 +VT + R+ K + + Y G +AF Sbjct: 705 EVTPELRSRAKAVNFGIVY--GQQAF 728 >gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] Length = 934 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 633 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNKEG 691 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++ ++ L+AF G+D++ T A V+ Sbjct: 692 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAFSAGKDIHAATAAEVKGVSI 751 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 +VT + R K + L Y G AF Sbjct: 752 EEVTSEDRRRAKAINFGLIY--GMSAF 776 >gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1] gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1] Length = 898 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 99/429 (23%), Positives = 167/429 (38%), Gaps = 50/429 (11%) Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 IV N F+ ++L + ++ + + T+++A S + A K M+ K Sbjct: 391 IVGQNLKFDLSLLYNQYGME-EVLPFADTMIMAWLTDPGSRVGLDSLAQKFFKYDMKPFK 449 Query: 128 ELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-SKEQE 184 E++ KGE +H + D +AW F Y G + E+ L +K+ E Sbjct: 450 EMVK---KGENFSHVNIADATFYAAEDAWMTFLLY--GAIKKKMELSSLTHLLKEAKDVE 504 Query: 185 LWYLDQTINDR--GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 +++ I G VD TL + + + +L E+ L+ G + R ++L Sbjct: 505 YPFINVLIRMERLGIKVDQVKLETLKKTLSEDLHRLTSEIHELS-GSEFNIRSTQQLGVV 563 Query: 243 LFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF GL T+T T + VL S K P ++ R + + L++ Sbjct: 564 LFQHLGLKGGKKTKTGYSTNEAVLQSLKHEHPVIGKILEYR-EYHKMLSTYVEPLLKLAK 622 Query: 300 SDGRLRGTLQFL-GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 D + R F+ + TGR S QN+P S Sbjct: 623 KDEKSRIYTSFIQTGTATGRLSSKDPNLQNIPVRS------------------------- 657 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + VR +A EG KLV D + IE R+LA + + ++AF G D+++ T + F Sbjct: 658 TLGRSVREAFVAKEGYKLVSIDYSQIELRLLAHFSKDAALMEAFNKGTDIHMATAVKLFG 717 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 A K +R K + L Y G K K++ G+ ++ A + Sbjct: 718 EEEA---KAKRNFAKSVNFGLLYGMGPK---KLSDELGITSAEAKEIIANYFAS--FPTV 769 Query: 479 ENFCRWMQE 487 +NF +QE Sbjct: 770 KNFLEGIQE 778 >gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] Length = 870 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 41/309 (13%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQEL-ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G+ VD A + + + ++QE+ +++ Y +S ++L LF++ GL Sbjct: 487 GFLVDAAGIAAYGETLGKKLAAIEQEIVDAVGYPFNLNSP--KQLGEALFVKLGLPHGKK 544 Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+T T VL + P AI + S+ + L++ + DGR+ + + Sbjct: 545 TKTGWSTSADVLDKLRGAHP-AIDALLGYRKLSKLKSTYTDGLLKVIAPDGRIHSSFNQV 603 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 +RTGR S QN+P S EL R +A Sbjct: 604 -ETRTGRISSTEPNLQNIPVRSAEGREL-------------------------RRFFVAR 637 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 G LV AD + IE R+LA +A + + AF ED++ T ++ F + P VT R+ Sbjct: 638 PGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQVFGMPPEYVTPIMRSR 697 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTF--AHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y GA + + + +++ +L K + + E R ++E H Sbjct: 698 AKAVNFGIVYGIGAFSLSQDIGVSVKEADSYIKGYLQKFSGVRDYME------RVIREAH 751 Query: 490 PEHAIEDLF 498 + +E LF Sbjct: 752 EKGYVETLF 760 >gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] Length = 920 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 7/144 (4%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 +R L + G + P PR H +Q +T +SDP+ LQ I Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLSSSDPN-LQNIPVR 674 Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R C I +G AD + IE R++A ++ ++ ++AF G D++ T A+ + Sbjct: 675 TDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAFREGHDIHRATAAKIW 734 Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441 +V +VT QR K + Y Sbjct: 735 HVDIDKVTDAQRKKAKQANFGIIY 758 >gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108] gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108] Length = 850 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 16/169 (9%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q T +SDP+ LQ I +R + EG L+ AD + Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY-- 441 IE R+LA ++ ++ + AF+ D++ T A F V A VT + R+ K + + Y Sbjct: 631 IELRILAHISEDERLINAFKNNIDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGI 690 Query: 442 --QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 G A+ + +N + P+ E +N R+ +EN Sbjct: 691 SDYGLARDIKISRKEAAEFINKYFE-----RYPKVKEYLDNIVRFAREN 734 >gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC] gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC] Length = 868 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 8/135 (5%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----L 376 P Q R H +Q+ T DP+ LQ I S+ RS A KK Sbjct: 585 LPKQINAGTQRIHPTFNQVGTVTGRLSCQDPN-LQNIPVRSERGRSLREAFRVKKDNDYF 643 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R LA ++ ++ +AF +GED++ T ++ FNV QVTK QR K + Sbjct: 644 LAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN 703 Query: 437 LALGYQGGAKAFQKM 451 L Y A K+ Sbjct: 704 FGLVYGQQAYGLSKI 718 >gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish] gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish] Length = 605 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 155/677 (22%), Positives = 235/677 (34%), Gaps = 185/677 (27%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAHN 72 D+ G+ + E CV FA+ +DD + L D V + + Q + E + TI+ HN Sbjct: 40 DIETPGLDRAFEINCVT-FAWRWDDGSIHSVLLDPVGNTLHRQACIDLYERAE-TIILHN 97 Query: 73 SYFERTVLK--ACFNL--DIPIHRWICTLVLARSNGLPSALKAVGEALK------LSSQK 122 + F+ L+ F +I I++ + TL+LAR LP V ++L L Sbjct: 98 APFDIPALRHAGLFGTSPNIAINKVVDTLLLARF-ALPDV--TVSKSLTALSIRYLGLSD 154 Query: 123 MEEGKELIARFCKGETHECLYDR---NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 ++G ++ +T + Y+ P +R D T +LEPL Sbjct: 155 FKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVG-------AMADTIATL----KLEPLL 203 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK- 238 W LD D G D L V R L + + L +R E+ Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263 Query: 239 ---------LKTWLFLETGL--------HLEDLTETTCQ--RVLSSNKKLTPQAIQVFNN 279 L LE G +LE + + R + K T + F++ Sbjct: 264 DAERIQHEALLAAHGLEGGAGKGKKIVEYLESIGQLPANWPRTPTGGLKATKDLLDGFDH 323 Query: 280 ------RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 R A VL T VE S GR + LGAS TGR + + Q P+ Sbjct: 324 PLTTAQRKLAEIDKVLGYLTKVERQASVTGRCHPQVGVLGASATGRMAYSMPELQQFPKD 383 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R +I +G+ L D + IE +A M Sbjct: 384 ARP--------------------------------IITDDGQGLTSIDWSQIEPVTMANM 411 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 AG+ L FE GEDLY RS + +TK+ R I KV+ LA Y Sbjct: 412 AGDVGFLIPFEAGEDLY-EPIQRSCGLP---MTKEGRDIAKVVLLATMY----------- 456 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ +N A +K N E A+ R M PE A W Sbjct: 457 ---GMGVNGLA--LKIN---HTVESAQQIRRQMLAAMPESA---------------KWMA 493 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +++ + G+ I A R +LP V+R Sbjct: 494 RVQGIAD-------------QYGRIITAAGR-----------------ILPVDDGGVFRA 523 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHD 630 V YT VQ + D+L + ++ +AG ++ + +HD Sbjct: 524 V----------------NYT---------VQGSALDVLHDTIVRMERAGLADELHVAMHD 558 Query: 631 EIVCETPDTDEFNASML 647 E++ TP DE ML Sbjct: 559 ELIVSTPVADEVQQIML 575 >gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276] gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s] gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768] gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222] gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074] gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301] Length = 866 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 8/135 (5%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----L 376 P Q R H +Q+ T DP+ LQ I S+ RS A KK Sbjct: 583 LPKQINAGTQRIHPTFNQVGTVTGRLSCQDPN-LQNIPVRSERGRSLREAFRVKKDNDYF 641 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R LA ++ ++ +AF +GED++ T ++ FNV QVTK QR K + Sbjct: 642 LAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN 701 Query: 437 LALGYQGGAKAFQKM 451 L Y A K+ Sbjct: 702 FGLVYGQQAYGLSKI 716 >gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038] Length = 750 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G ++ AD + Sbjct: 471 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 529 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L AF G+D++ T A F +VT +QR K + L Y Sbjct: 530 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 587 Query: 444 GAKAF 448 G AF Sbjct: 588 GMSAF 592 >gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1] gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1] Length = 883 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASE-GKKLVVADLAG 383 P+ R H Q +T +++P+ P+++ +R I + G ++ AD + Sbjct: 602 PQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLETGRKIRKVFIPRQRGNLILTADYSQ 661 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA M+ ++ L AF G+D++ T + F V QVT + R+ K + + Y Sbjct: 662 IELRVLAHMSQDESFLDAFRQGQDIHTRTASEVFGVPMDQVTSEMRSRAKAVNFGIVY 719 >gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS] gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS] Length = 929 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 29/213 (13%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNT 293 ++L+ LF E + T+T + + L + F + A R A + ++ Sbjct: 575 KQLQAVLFDELAMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDG 634 Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L+ ++ SDGR+ T Q + A TGR S QN+P + + + Sbjct: 635 LLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIRTEAGRRIRDAF--------- 683 Query: 353 DPDPLQIISDCVRSCVIASEG----KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 V S S G +L+ AD + IE R++A ++ + ++AF TGEDL Sbjct: 684 ----------VVESRPPGSGGGAVFTELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDL 733 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + +R+F+V +VT D R K M L Y Sbjct: 734 HSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAY 766 >gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 537 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H Q + + DP+ P++ + +R +A G +V AD + I Sbjct: 365 PGTGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQI 424 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA ++ + + AF G+D++V T F V A VT + R K + + Y G Sbjct: 425 ELRVLAHLSKDPVLVDAFRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMG 484 Query: 445 AKAFQK 450 A K Sbjct: 485 ESALAK 490 >gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] Length = 927 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G+KLV D + IE R++A ++ + L AF +G D++ T A F + Sbjct: 688 IRRAFVAPPGRKLVACDYSQIELRIMAHLSQDPGLLGAFASGADIHRATAAEVFGRPLEE 747 Query: 424 VTKDQRAIGKVMELALGYQGGA 445 VT ++R K + L Y GA Sbjct: 748 VTVNERRAAKAINFGLMYGMGA 769 >gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] Length = 920 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 SR H +Q + ++DP+ LQ I +R + +G + L+ AD + IE Sbjct: 643 SRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGDGFESLMTADYSQIE 701 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ ++AF +GEDL+ T ++ F+V + V + R K M L Y G Sbjct: 702 LRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEMRRKIKAMSYGLAY--GL 759 Query: 446 KAF 448 AF Sbjct: 760 SAF 762 >gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605] gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605] Length = 986 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 12/132 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I S +R + EG L+ AD + IE Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIEL 753 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ G+D++ T AR + +V+ D+R +GK + + Y GA Sbjct: 754 RILTHLSGEKVLQEAYRGGDDVHALT-ARLL-LDKDEVSPDERRLGKTINFGVIYGMGA- 810 Query: 447 AFQKMASTTGLN 458 Q+ A TG++ Sbjct: 811 --QRFARETGVS 820 >gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 317 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++G++ L AF +GEDL+ + A + V P +VT QR+ K Sbjct: 89 LMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKAT 148 Query: 436 ELALGY 441 L Y Sbjct: 149 SYGLAY 154 >gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953] gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] Length = 932 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G ++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L AF G+D++ T A F +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] Length = 941 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EGK LV D + IE R+LA +A +AF G D++ T + FNV + Sbjct: 701 IREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDE 760 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 761 MTPDVRRQAKAINFGVIY 778 >gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142] gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142] Length = 970 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 74/323 (22%), Positives = 124/323 (38%), Gaps = 80/323 (24%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q +T +S+P+ I S +R I + LV AD + IE Sbjct: 679 KTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYSQIE 738 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++ E L A++ ED++ T F ++T +R +GK + + Y G+ Sbjct: 739 LRILAHLSQESVLLNAYQNAEDVHTVTAKLLFE--KEEITPQERNLGKTINFGVIYGMGS 796 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + F + A SA E E FI Sbjct: 797 QRFAREAGV---------------SATEGKE---------------------FIN----- 815 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILMLP 563 +RQ++++V E + + + I NG I+ R+R Y +NL Sbjct: 816 ---KYRQRYAKVFEYLENMKK---EAIANGYVTTILGRRR------YFNFFDDNLYRF-- 861 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNA 617 R + + N+ +N QL R +Q S DI+ M +N Sbjct: 862 --RGHDPQTIDLNKLNINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILNY 913 Query: 618 TKAGYDIVLTVHDEIVCETPDTD 640 +A +++L VHDE+V E P+ + Sbjct: 914 YQA--NLLLQVHDELVFEIPEKE 934 >gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10] gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua] gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516] gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92] gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516] gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003] gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10] gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516] gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua] gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92] gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516] gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004] gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003] gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 932 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G ++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L AF G+D++ T A F +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] Length = 932 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G ++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L AF G+D++ T A F +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1] gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1] Length = 910 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 16/182 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q +T +S+P+ LQ I +R+ +A+ G + AD + Sbjct: 631 PADGRVHTTFNQTVTATGRLSSSNPN-LQNIPIRTPEGRRLRAAFVAAAGHLFLAADYSQ 689 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 I+ RVLA +G+ +AF +D++ T A F V V+ D R + K + + Y Sbjct: 690 IDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGM 749 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A + + TF +E + R+MQE E A D ++GT Sbjct: 750 SAFGLAEQLRCSRKEAQTFID--------RYFELYQGVLRFMQEIV-EQARRDGWVGTLL 800 Query: 504 ER 505 R Sbjct: 801 NR 802 >gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238] gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238] Length = 928 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EGK LV D + IE R+LA +A +AF G D++ T + FNV + Sbjct: 688 IREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDE 747 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 748 MTSDVRRQAKAINFGVIY 765 >gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] Length = 1024 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG KL+ AD + IE R+LA +A +AF G D++ T + F V Q Sbjct: 781 IRQAFVADEGHKLISADYSQIELRLLAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQ 840 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +T D R K + + Y G AF +A G+ A +K Sbjct: 841 MTPDLRRRAKTINFGIIY--GISAF-GLADRLGIPQGEAAAFIK 881 >gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16] gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16] Length = 877 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386 + H +Q +T ++DP+ P+++ +R +AS EG K+V AD + IE Sbjct: 601 GKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVASKEGWKIVAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ +AF TG D++ T F+V +VT R K + + Y Sbjct: 661 RVLAHISGDERMKEAFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIVY 715 >gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola] gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A] gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola] gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A] Length = 932 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G ++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L AF G+D++ T A F +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B] Length = 850 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q T +SDP+ LQ I +R + EG L+ AD + Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ ++ + AF+ D++ T A F V A VT + R+ K + + Y Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVY 688 >gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] Length = 932 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA +G ++ AD + Sbjct: 653 PVSGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQ 711 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L AF G+D++ T A F +VT +QR K + L Y Sbjct: 712 IELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIY-- 769 Query: 444 GAKAF 448 G AF Sbjct: 770 GMSAF 774 >gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] Length = 920 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 +R L + G + P PR H +Q T +SDP+ LQ I Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQTSTGRLSSSDPN-LQNIPVR 674 Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R C I +G AD + IE R++A ++G++ ++AF G D++ T A+ + Sbjct: 675 TDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIW 734 Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441 + +VT QR K + Y Sbjct: 735 HEDIEKVTDAQRKKAKQANFGIIY 758 >gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3] Length = 925 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P LP+ R H T +S+P+ LQ I +R+ IAS+G L+ Sbjct: 637 LPSYILPKTGRVHTNYSLATTSTGRLSSSEPN-LQNIPVRTAEGRKIRTAFIASKGYLLL 695 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA A +AF G+D++ T A+ F VA ++ + R K + Sbjct: 696 SADYSQIELRVLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINF 755 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + Y G F +A+ G++ +H ++ Sbjct: 756 GIIY--GISPF-GLANQLGISRKEASHYIQ 782 >gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233] gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233] Length = 902 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 30/209 (14%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+ LF E G+ T+T + L Q F + R V +L VE Sbjct: 557 KQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHRD-VTRLKVTVE 615 Query: 297 AM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + DGR+ T Q A+ TGR S QN+P I + Sbjct: 616 GLRKSVGDDGRIHTTFQQTVAA-TGRLSSTEPNLQNIP-------------------IRT 655 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 D L R+ V + L+ AD + IE R++A ++ ++ ++AF +GEDL+ Sbjct: 656 DEGRL-----IRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEGLIEAFRSGEDLHTFV 710 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++F + QVT + R K M L Y Sbjct: 711 AMKAFGLPAEQVTPELRRRIKAMSYGLAY 739 >gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114] gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Vibrio fischeri ES114] Length = 932 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 631 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 689 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++ ++ L AF G+D++ T A V+ Sbjct: 690 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSI 749 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 +VT + R K + L Y G AF Sbjct: 750 EEVTSEDRRRAKAINFGLIY--GMSAF 774 >gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19] gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19] Length = 959 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA G KL+ AD + IE R+LA + + KAF G+D++ T + F V A Sbjct: 716 IRTAFIAKPGCKLISADYSQIELRLLAHIGDIEQLKKAFSDGQDIHAMTASEMFGVPMAD 775 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +T + R K + + Y G F +A+ G++ + +KT Sbjct: 776 MTSEIRRRAKAINFGIIY--GISGF-GLANQLGIDQGEASRYIKT 817 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 9/133 (6%) Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKL 376 V P P R H Q+ T + DP+ LQ I +R + G Sbjct: 612 VLPGLVNPETGRLHTWFSQVGTATGRLSSKDPN-LQNIPIKTEEGRRIREAFVPQRGWWF 670 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE +LA ++G+ +AF GED++ T + F V P VT +QR I K + Sbjct: 671 LSADYSQIELVILAHLSGDPALCRAFREGEDVHRATGSLLFGVPPETVTPEQRRIAKTIN 730 Query: 437 LALGYQGGAKAFQ 449 + Y G AF+ Sbjct: 731 FGVIY--GMSAFR 741 >gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper] gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper] Length = 609 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 110/479 (22%), Positives = 175/479 (36%), Gaps = 93/479 (19%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAH 71 +D G+ Y +D + L FG +P E W V AL+ V H Sbjct: 40 LDTETTGLNIYQDDFGIRLIQFG---NPWESWVLPVERGGVFVGAAATALQKVQ-RFVIH 95 Query: 72 NSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL--PSALKAVGEALKLSS-------- 120 N+ F+ V++ L +P+ + W + L P A K G KL Sbjct: 96 NAAFDLQVIERT--LGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDP 153 Query: 121 QKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 EE K +AR K L D + P++ Y D + + ++ Sbjct: 154 VTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYEL-------YAGMDTILVSRLLGKV 206 Query: 176 EPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 PL + E +L + + G+ +DV + L++ + + + + + Y Sbjct: 207 APLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSEDM-LRKAEHYTAVARYAY 265 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G V S EKL L TG+ ++ T T ++V N +L + N +A+ A Sbjct: 266 G-VDSVNSTEKLADGL-ERTGVKIKGRTATNKRQV---NAELLEALAEEGNALAKAAIEA 320 Query: 288 V-------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +E +++ R+ + L A RTGR S QNLP Sbjct: 321 KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW------ 373 Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 VR C +A G+ + D E RVLA ++G+Q L+ Sbjct: 374 ----------------------MVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTMLR 411 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AFE DL+ T A R IGK+ + Y GGA K+A+ G+ Sbjct: 412 AFEEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAG---KLATNAGITF 458 >gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110] gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110] Length = 583 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 7/131 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 + R H +Q +T +S+P+ I S +R I + LV AD + IE Sbjct: 292 KTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYSQIE 351 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++ E L A++ ED++ T F ++T +R +GK + + Y G+ Sbjct: 352 LRILAHLSQEPVLLNAYQNTEDVHTVTAKLLFE--KEKITSQERNLGKTINFGVIYGMGS 409 Query: 446 KAFQKMASTTG 456 + F + A T Sbjct: 410 QRFAREAGVTA 420 >gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] Length = 888 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIAS-EGKKLVVADLAGIE 385 ++ H +Q IT +S+P+ LQ I +R I+S E LV AD + IE Sbjct: 612 NKIHSTFNQTITTTGRISSSNPN-LQNIPVRTEEGRIIRKVFISSSENNVLVDADYSQIE 670 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++ ++ + +F+ ED++ T + FNV +VT + R+ K + + Y Sbjct: 671 LRVLAHISKDEKLINSFKNNEDIHTRTASEVFNVPIDEVTSEMRSSAKAVNFGIVY 726 >gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145] gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145] Length = 924 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR +A EG +V D + IE R++A ++ + L+AF G+D++ T + F + + Sbjct: 683 VRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDASLLRAFAQGQDIHRATASEVFGCSLEE 742 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 743 VTDEQRRRAKAVNFGLIY--GMSAF 765 >gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 908 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 631 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIE 689 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ ++AF +GEDL+ T A+ F V + V + R K M L Y G Sbjct: 690 LRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAMSYGLAY--GL 747 Query: 446 KAF 448 AF Sbjct: 748 SAF 750 >gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] Length = 850 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q T +SDP+ LQ I +R + EG L+ AD + Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ ++ + AF+ D++ T A F V A VT + R+ K + + Y Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVY 688 >gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11] gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11] Length = 932 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 9/147 (6%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G ++ P P R H Q +T ++DP+ LQ I Sbjct: 631 LEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPN-LQNIPIRNEEG 689 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++ ++ L AF G+D++ T A V+ Sbjct: 690 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSI 749 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF 448 +VT + R K + L Y G AF Sbjct: 750 EEVTSEDRRRAKAINFGLIY--GMSAF 774 >gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 907 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 630 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 688 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ ++ ++AF +GEDL+ T ++ F V + V + R K M L Y G Sbjct: 689 LRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAY--GL 746 Query: 446 KAF 448 AF Sbjct: 747 SAF 749 >gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] Length = 894 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 32/210 (15%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+T LF E L ++ +S K L + F ++ A R A KL ++E Sbjct: 549 KQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLEKTGHEFLVQLMAHREAA-KLRQMIE 607 Query: 297 AMNS----DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 ++ DGR+ T + TGR S QN+P RS E Sbjct: 608 SLKKSVAEDGRIHTTYA-QNVAATGRISSNNPNLQNIP--IRSEE--------------- 649 Query: 353 DPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 VR + S+G + L+ AD + IE R++A ++G+ ++A++ GEDL+ Sbjct: 650 --------GRRVRGIFVVSDGYECLLSADYSQIEMRIMAHLSGDAGLIQAYKDGEDLHRF 701 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + F+V QVT R+ K M L Y Sbjct: 702 VGSNIFHVPTDQVTSAMRSKVKAMSYGLAY 731 >gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516] gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516] Length = 933 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A GK LV D + IE R+LA +AG +AF +G+D++ T + FNV + Sbjct: 693 IREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHAATASEMFNVPLEE 752 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 753 MTPDVRRQAKAINFGVIY 770 >gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B] gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B] Length = 910 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q++ + DP+ LQ I +R + +G + L+ AD + IE Sbjct: 633 GRIHTTFNQMVAATGRLSSQDPN-LQNIPIRTAEGRRIRQAFVVGKGYEALLTADYSQIE 691 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++ +Q ++AF +G D + T A F V P QV + R K M L Y Sbjct: 692 MRIMAHLSQDQALIEAFRSGFDFHAATAASVFGVRPEQVDAEMRRRVKAMNYGLAY 747 >gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN] Length = 870 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 79/353 (22%), Positives = 140/353 (39%), Gaps = 56/353 (15%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 LS E L + ++ G +DV L + + E L +E+ L+ G + + + Sbjct: 473 LSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELAVLTEEIYDLS-GRPFNIKSPK 531 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L L+ E GL D ++T VL + + P ++ A R+ L+T V+A Sbjct: 532 QLSDILYNELGLRPIDKAKSTRAEVLEALRSEHP-----IIEKLLAFRTIEKLLSTYVKA 586 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + P Q R H DQ T DP+ Sbjct: 587 L--------------------------PKQVDSHTQRIHPSFDQTGTVTGRLACRDPNLQ 620 Query: 358 QIISDCVRSCVI------ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I R ++ + + + AD + IE R LA ++ ++ AFE+GED++ Sbjct: 621 NIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAF 680 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T ++ F+V QV+K+QR K + + Y G +AF +A +++ L++ + Sbjct: 681 TASQVFHVPLEQVSKEQRMQAKTVNFGIVY--GQQAF-GLAKVLKISVGEAQELIQAYFS 737 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + +F E + A +DL + T R R+ + WNE Sbjct: 738 --RYPEIAHFV----EETIQQAAKDLRVTTMLGR---------ERIIDSWNEF 775 >gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L] gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L] Length = 996 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q +T +S P+ P++ S +R I G LV AD + IE R+ Sbjct: 707 RVHTDFNQTVTTTGRLSSSSPNLQNIPIRTDFSRQIRKGFIPESGWLLVSADYSQIELRI 766 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ E ++A++T D++ T F+ +T ++R +GK++ + Y GA+ F Sbjct: 767 LAHLSQEPVLVEAYQTQADVHTLTAQMLFD--KEDITAEERRLGKIINFGVIYGMGAQRF 824 Query: 449 QKMASTT 455 + A + Sbjct: 825 AREAKVS 831 >gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4] Length = 901 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 32/215 (14%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + G+ T+T T VL P + R A + + Sbjct: 559 KQLGVILFEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQLAKLKSTYA-DG 617 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L ++ DGR+R T + TGR S QN+P E+ ++ P Sbjct: 618 LAACVDEDGRIRSTF-MQTVTATGRISSTEPNLQNIPIRMELGREIRKVF--YPKK---- 670 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 DCV + AD + IE RVLA M+G++ + AF+ G+D++ +T Sbjct: 671 --------DCV-----------FLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTA 711 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + FN +VT QR K + + Y G AF Sbjct: 712 SLVFNTPFDEVTDLQRRRAKAVNFGIVY--GISAF 744 >gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104] gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104] Length = 913 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 32/170 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 F + A R A + ++ L+ ++ SDGR+ T Q + A TGR S QN+P Sbjct: 608 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 665 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 + + +R + +G +L+ AD + IE R++A Sbjct: 666 TEAGRR-------------------------IRDAFVVGDGYAELMTADYSQIEMRIMAH 700 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ + ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 701 LSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAY 750 >gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3] gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3] Length = 945 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 R H +Q I ++DP+ LQ I R+ V+ + + L+ AD + IE Sbjct: 668 GRIHTTFNQTIAATGRLSSADPN-LQNIPIRTAEGRQIRRAFVVGAGYETLLTADYSQIE 726 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++G++ ++AF +GEDL+ A +F + ++V + R K M L Y G Sbjct: 727 MRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAMSYGLAY--GL 784 Query: 446 KAF 448 AF Sbjct: 785 SAF 787 >gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E] gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii] gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii] gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii] gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii] gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22] Length = 867 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF ED++ T + FN+ + Sbjct: 630 IREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQIFNLKKHE 689 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 +T + R K + + Y G AF Sbjct: 690 LTSEHRRKAKAINFGIIY--GISAF 712 >gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f] gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f] Length = 891 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 R H +Q+I ++DP+ LQ I R+ V+ + L+ AD + IE Sbjct: 614 GRIHTTFNQMIAATGRLSSTDPN-LQNIPIRTPQGRQIRRAFVVGPGYETLLTADYSQIE 672 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++G+ ++AF +GEDL+ A++F++ ++V + R K M L Y G Sbjct: 673 MRLMAHLSGDAGLIEAFASGEDLHTFVAAQAFDLPVSEVDPELRRRIKAMSYGLAY--GL 730 Query: 446 KAF 448 AF Sbjct: 731 SAF 733 >gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73] gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans] Length = 922 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 28/219 (12%) Query: 255 TETTCQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLV--------------E 296 ++ QR+L++ +K A + FN +++A LKL L+ E Sbjct: 550 SQVLSQRMLAAQQKAVALAGRSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEEALE 609 Query: 297 AMNSDGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 A+ L R L++ G ++ P P R H Q +SDP+ Sbjct: 610 AIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAATGRLSSSDPN 669 Query: 356 PLQII------SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 LQ I +R +A G+KL+ D + IE R++A ++ + L+AF G D++ Sbjct: 670 -LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSEDPGLLRAFSQGVDVH 728 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 T A F QV+ ++R K + L Y G AF Sbjct: 729 RATAAEVFGRTLEQVSANERRAAKAINFGLMY--GMSAF 765 >gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C] Length = 968 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 81/352 (23%), Positives = 136/352 (38%), Gaps = 83/352 (23%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P LP R H + T L ++S LQ I +R+ +AS+G L+ Sbjct: 680 LPSYILPTTGRVHTNYS-LATTLTGRLSSSEPNLQNIPVRTAEGRKIRAAFVASKGHLLL 738 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA +A +AF G+D++ T ++ F VA +T + R K + Sbjct: 739 SADYSQIELRILAHVADITALKEAFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINF 798 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y G F +AS G++ ++A ++ + E P IED Sbjct: 799 GIIY--GISPF-GLASQLGIS----------------RKEASDYIQLYFERFP--GIEDY 837 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 ER K R H + +TI R + +K DK Sbjct: 838 M-----ERTKIFAR-------------HYGYVETIFG---------RRIHYPEIKTDK-- 868 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 P RS N R+ +N + G + I +A+ I E + Sbjct: 869 -----PQIRSF------NERAAINAPIQ---------GSAADIIRRAM---IQMENALEK 905 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN---PSWAKGLPLKAE 666 + ++L VHDE++ E P ++ ++L + N P+ + +PL+ + Sbjct: 906 ERLSAKMLLQVHDELIFEVPKSESKKTTILIKKVMENATMPALSLSVPLEVK 957 >gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102] gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102] Length = 978 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 10/143 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H + +Q T +S+P+ P++ S +R + G +V AD + I Sbjct: 685 PDTQRVHTDFNQAATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPEAGWLMVAADYSQI 744 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E ++A++ ED++ T F ++T ++R I K + + Y G Sbjct: 745 ELRILAHLSQEPILVQAYQQNEDVHTVTGRLVFE--KEKITSEERGIAKTINFGVIYGMG 802 Query: 445 AKAFQKMASTTGLNLNTFAHLVK 467 + F + +TG++ N +K Sbjct: 803 SLRFSR---STGIDKNIANEFIK 822 >gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895] Length = 928 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R IA + + AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPQDYVIASADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLESVTAEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823] gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823] Length = 951 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 10/132 (7%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCVIASEGKKL 376 P P R H Q +T +++P+ LQ I + R+ + S+ +L Sbjct: 666 LPTMKDPVDGRVHTSYMQTVTATGRLSSNNPN-LQNIPIRSERGKEIRRAFIARSKDFQL 724 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A +A + ++AF+ D++ T A+ F+V VTKDQR+ K + Sbjct: 725 MSADYSQIELRIIAALADDTNMIQAFKDKVDIHRATAAKVFHVELDDVTKDQRSAAKAVN 784 Query: 437 LALGYQGGAKAF 448 + Y G AF Sbjct: 785 FGIIY--GQSAF 794 >gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476] gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476] Length = 968 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 10/141 (7%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P LP+ R H IT +S+P+ LQ I +R+ IA +G L+ Sbjct: 680 LPSYILPKTGRVHTNYSLAITSTGRLSSSEPN-LQNIPVRTAEGRKIRTAFIAPKGHVLL 738 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA +A + +AF G D++ T ++ F VA + D R K + Sbjct: 739 SADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINF 798 Query: 438 ALGYQGGAKAFQKMASTTGLN 458 + Y G AF +A+ G++ Sbjct: 799 GIIY--GISAF-GLANQLGIS 816 >gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] Length = 957 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCVIASEGKKLVVADLA 382 P+ R H +Q++ +SDP+ LQ I S R+ V +LV AD + Sbjct: 676 PQSGRIHTSFNQVVAATGRLSSSDPN-LQNIPIRTPEGSRIRRAFVSCDPEWRLVCADYS 734 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA + + + AFE GED++ A+ VA VT D R I K + + Y Sbjct: 735 QIELRMLAHFSQDPALVSAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMY 793 >gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70] gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s] gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923] gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2] gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150] gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023] Length = 866 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 8/135 (5%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----L 376 P Q R H +Q+ T DP+ LQ I S+ RS A KK Sbjct: 583 LPKQINAGTQRIHPTFNQVGTVTGRLSCQDPN-LQNIPVRSERGRSLREAFRVKKDNDYF 641 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R LA ++ ++ +AF +GED++ T ++ FNV QVTK QR K + Sbjct: 642 LAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN 701 Query: 437 LALGYQGGAKAFQKM 451 L Y A K+ Sbjct: 702 FGLVYGQQAYGLSKI 716 >gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] Length = 934 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T + DP+ LQ I +R IA G ++ AD + Sbjct: 655 PISGRVHTSYHQAVTATGRLSSRDPN-LQNIPVRNEEGRRIRQAFIAPAGYCILAADYSQ 713 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 714 IELRIMAHLSQDKGLLAAFAEGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIY-- 771 Query: 444 GAKAF 448 G AF Sbjct: 772 GMSAF 776 >gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 919 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 32/170 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 F + A R A + ++ L+ ++ SDGR+ T Q + A TGR S QN+P Sbjct: 614 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 671 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 + + +R + +G +L+ AD + IE R++A Sbjct: 672 TEAGRR-------------------------IRDAFVVGDGYAELMTADYSQIEMRIMAH 706 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ + ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 707 LSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAY 756 >gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse] gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse] Length = 968 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P L + R H IT +S+P+ LQ I +R+ IA +G L+ Sbjct: 680 LPSYILSKTGRIHTNYSLAITSTGRLSSSEPN-LQNIPVRTTEGRKIRTAFIAPKGHMLL 738 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA +A +AF G+D++ T ++ F VA + D R K + Sbjct: 739 SADYSQIELRILAHIADIIALKEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAINF 798 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + Y G AF +A+ GL+ +H ++ Sbjct: 799 GIIY--GISAF-GLANQLGLSRQEASHYIQ 825 >gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] Length = 897 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q +T +++P+ P+++ + +R +A+E + + AD + + Sbjct: 619 PETGRIHSNFNQTVTTTGRISSTEPNLQNIPIKLEMGRRLRKVFVANENHQFIDADYSQV 678 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA + ++ L AF +D++ T A F+V +VT R+ K + + Y Sbjct: 679 ELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDSMRSSAKAVNFGIVY 735 >gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183] gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183] Length = 870 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 108/488 (22%), Positives = 185/488 (37%), Gaps = 79/488 (16%) Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSAL 109 ++P +LK+ D+T +N +R A N I I L LA +NG Sbjct: 352 ILP-ILKDFFLREDLTFYGYN--LKRDC-HALLNAGIVIREISYDLALAEHLTNG----- 402 Query: 110 KAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 G + S + G E RF K + L P E + FGE+ + Sbjct: 403 ---GGKISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQY--FGEFVAYLPIIK 457 Query: 169 REIFKRL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 I + + LS E L + ++ G +DV L + + E L +E+ Sbjct: 458 DAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEI 517 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 L+ G + + ++L L+ E GL D ++T VL + + P ++ Sbjct: 518 YDLSGGPFNI-KSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHP-----IIEKLL 571 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A R+ L+T V+A+ P Q R H DQ Sbjct: 572 AFRTIEKLLSTYVKAL--------------------------PKQVDSHTQRIHPSFDQT 605 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLVVADLAGIEARVLAWMAGEQ 396 DP+ I R ++ + + + AD + IE R LA ++ ++ Sbjct: 606 GAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQDK 665 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 AFE+GED++ T ++ F+V QV+K+QR K + + Y G +AF +A Sbjct: 666 SLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVY--GQQAF-GLAKVLK 722 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 +++ L++ + + + +F E + A +DL + T R R Sbjct: 723 ISIGEAQELIQAYFS--RYPEIAHFV----EETIQQAAKDLRVTTMLGR---------ER 767 Query: 517 VSELWNEL 524 + + WNE Sbjct: 768 IIDSWNEF 775 >gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool] Length = 2215 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 30/186 (16%) Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330 A+Q + +A+++ ++ L + +NS G++ +L GA +GR+S C P Q +P Sbjct: 1914 AVQALRDYRKAAKAITTFVDKLPQHINSVTGKIHCSLHQCGAG-SGRFS-CDSPNLQQIP 1971 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVL 389 R R C V S +A K ++AD + IE R+ Sbjct: 1972 RERR-------------------------FRACFVPSAKVAGRPGKFIIADFSQIELRIA 2006 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A ++ ++A++ GEDL+ T + N + ++K R + K + L Y A F+ Sbjct: 2007 ADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQLAKAVNFGLIYGMSADRFR 2066 Query: 450 KMASTT 455 AS+ Sbjct: 2067 GYASSA 2072 >gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330] Length = 925 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 7/119 (5%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382 LP+ R H Q + +++P+ LQ I VR A + +V AD + Sbjct: 644 LPQTGRVHTNYAQAVAITGRLASNNPN-LQNIPIRTEQGRRVRRAFTAPQNCVIVSADYS 702 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ AF ED++ T A F +AP +T +QR K + L Y Sbjct: 703 QIELRIMAHLSGDTTLQAAFHNNEDVHRRTAAEVFGMAPEHITSEQRRYAKTINFGLIY 761 >gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2] gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2] Length = 928 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T ++DP+ LQ I +R IA E +V AD + I Sbjct: 651 KTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQI 709 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y G Sbjct: 710 ELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIY--G 767 Query: 445 AKAF 448 AF Sbjct: 768 MSAF 771 >gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] Length = 942 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A +GK L+ AD A IE +LA ++ ++ ++AF+ G D++ T A F + + Sbjct: 703 IRKAFQAEKGKNLISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFGMPIGE 762 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449 V D R I K + + Y G AF+ Sbjct: 763 VLPDMRRIAKTINFGVMY--GMSAFR 786 >gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] Length = 949 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG L+ D + IE R+LA +AG +AF G+D++ T + FNV ++ Sbjct: 709 IREAFVAEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSE 768 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 769 MTPDIRRQAKAINFGVIY 786 >gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] Length = 811 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ P+++ + +R + +G + AD + IE R Sbjct: 536 GRIHSTFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPEDGYVFLDADYSQIELR 595 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA M+G++ ++A+ ED++ T ++ F+V +VT QR K + + Y Sbjct: 596 VLAHMSGDEKLIQAYREAEDIHRLTASQVFHVPFDEVTDLQRRNAKAVNFGIVY 649 >gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21] gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21] Length = 944 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H + ++DP+ P++ I +R +A EG L+ AD + I Sbjct: 665 PRSGRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDAFVAEEGNVLLAADYSQI 724 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+ A MA +AF GED++ T F +VT+D RA K + A+ Y Sbjct: 725 ELRLAAHMADVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILY 777 >gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 849 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ P+++ + +R + EG + AD + IE R Sbjct: 574 GRIHSTFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPEEGYVFLDADYSQIELR 633 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA M+G++ ++A++ +D++ T + F+V +VT QR K + + Y Sbjct: 634 VLAHMSGDEKLIQAYKEAQDIHRHTASEVFHVPFDEVTDLQRRNAKAVNFGIVY 687 >gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601] gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601] Length = 935 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 27/151 (17%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L E +N D GR+ + GA+ TGR S QN+P RS E Sbjct: 648 DALQEHINKDTGRVHTSYVISGAN-TGRLSSTDPNLQNIP--VRSEE------------- 691 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R +A EGK +V D + IE R+LA MA +AF G+D++ Sbjct: 692 ----------GRRIREAFVAPEGKTIVALDYSQIELRILAHMAEIDALKQAFRDGQDIHA 741 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + FNV ++T + R K + + Y Sbjct: 742 MTASEMFNVPMDEMTSEIRRQAKAINFGVIY 772 >gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917] gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917] Length = 996 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ I S +R + G +L+ AD + IE R Sbjct: 705 GRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQAGWQLLSADYSQIELR 764 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +L ++GE+ +A+ G+D++ T AR + VT D+R +GK + + Y GA Sbjct: 765 ILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LEKKAVTADERRLGKTINFGVIYGMGA-- 820 Query: 448 FQKMASTTGLN 458 Q+ A TG++ Sbjct: 821 -QRFARETGVS 830 >gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS] Length = 904 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 11/157 (7%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G S+ P P R H Q +SDP+ LQ I Sbjct: 605 LEYRGLSKLKSTYTDKLPRMISPATGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAG 663 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 VR IA +GK L+ AD + IE R++A ++ + +AF GED++ T + F V Sbjct: 664 RRVREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPL 722 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 A+V +QR K + L Y G F +AS G+ Sbjct: 723 AEVGAEQRRAAKAINFGLIY--GMGVF-GLASNLGIT 756 >gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074] Length = 897 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 29/180 (16%) Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 T + V R R + + L++++ +DGR+ T A+ TGR S QN+ Sbjct: 588 TDHELPVIMLRHREQAKLRVTVEGLIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNI 646 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388 P R+ E +R + EG + L+ AD + IE RV Sbjct: 647 P--VRTDE-----------------------GRAIRRGFVVGEGYESLMTADYSQIELRV 681 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ ++AF +GEDL+ T ++ F V V + R K M L Y G AF Sbjct: 682 MAHLSQDEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAY--GLSAF 739 >gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810] gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810] Length = 904 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +A EG + L+ AD + IE R++A ++ + ++AF +GEDL+ +R F V+P Sbjct: 663 IRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDLHNFVASRVFGVSPD 722 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 V R+ K + L Y G AF Sbjct: 723 AVDPAMRSKTKAVSYGLAY--GLSAF 746 >gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] Length = 863 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T AS TGR S QN+P + + + Sbjct: 577 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 623 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS I EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 624 -------------IRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLH 670 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F+V +VT + R K M L Y G AF Sbjct: 671 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLVY--GLSAF 707 >gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074] gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074] Length = 908 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 29/180 (16%) Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 T + V R R + + L++++ +DGR+ T A+ TGR S QN+ Sbjct: 599 TDHELPVIMLRHREQAKLRVTVEGLIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNI 657 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388 P R+ E +R + EG + L+ AD + IE RV Sbjct: 658 P--VRTDE-----------------------GRAIRRGFVVGEGYESLMTADYSQIELRV 692 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ ++AF +GEDL+ T ++ F V V + R K M L Y G AF Sbjct: 693 MAHLSQDEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAY--GLSAF 750 >gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] Length = 1046 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 112/253 (44%), Gaps = 39/253 (15%) Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQF 310 T ++++N++LT ++ ++ R+ L+T +E + + + R+ T Sbjct: 720 TNVEVLEMIANNRELTEDK-RMIGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHTTFNQ 778 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 G S TGR S QN+P + +D D ++I R+ ++ Sbjct: 779 NGTS-TGRLSSANPNLQNIP-------------------VRTD-DGIRI-----RTGFVS 812 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS--FNVAPAQVTKDQ 428 EG L+ D + IE RVLA ++ ++ ++A++ +DL+ T AR F ++++ + Sbjct: 813 KEGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLT-ARKIFFKTEEDEISRHE 871 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R+I KV+ ++ Y G F ++ G+ + + + T EE+ F + E Sbjct: 872 RSIAKVINFSILY--GKTPFG-LSKELGITVQEASQYITT--YFEEYPRVRKFLDIVTET 926 Query: 489 HPEHAIEDLFIGT 501 H + F GT Sbjct: 927 AKLHGFVETFYGT 939 >gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17] gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17] Length = 920 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H +Q +T +SDP+ LQ I +R C I G AD + Sbjct: 642 PRTGRIHTSFNQTVTATGRLSSSDPN-LQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++ ++ ++AF G D++ T AR ++ +VT +R K + Y Sbjct: 701 IELRIMAHLSEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIY 758 >gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99] gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99] Length = 899 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD--PLQIISDC---VRSCVIASEG-KKLVVADLAGIEA 386 R H +Q I +++P+ + I +D +R + +G +L+ AD + IE Sbjct: 622 GRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVGDGYSELMTADYSQIEM 681 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++ ++ ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 682 RIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAY 736 >gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] Length = 420 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q IT +++P+ P ++ + +R + EG V AD + IE RV Sbjct: 146 RIHGKFNQTITATGRISSTEPNLQNIPARVELGRAIRKVFLPEEGYTFVDADYSQIELRV 205 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ ++ + A+E +D++ T + F V QV+ QR K + + Y G AF Sbjct: 206 LAHLSRDKNLIHAYEMEQDIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVY--GLSAF 263 >gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289] gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289] Length = 920 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 +R L + G + P PR H +Q T +SDP+ LQ I Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLSSSDPN-LQNIPVR 674 Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R C I +G AD + IE R++A ++G++ ++AF G D++ T A+ + Sbjct: 675 TDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIW 734 Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441 + +VT QR K + Y Sbjct: 735 HEDIDKVTDAQRKKAKQANFGIIY 758 >gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10] Length = 887 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 36/246 (14%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A TL Q+ + KL Q+LE Y L ++L LF + GL + T+T Sbjct: 508 ASTLIQLQNEFAVKL-QDLEKKIYQQAGEEFNLNSPKQLGHILFEKLGLPVLKKTKTGYS 566 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + + L++ + DGR+ LQ L A T Sbjct: 567 TSVEVLDQLKTQSPIVKEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 623 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +++ + + SDPD + SC Sbjct: 624 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSDPDG------YIFSC--------- 662 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435 D + +E RVLA ++G+ +AF+TG D++ T + F++ +P +VT R K + Sbjct: 663 ---DYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAMKIFHLDSPDKVTPLMRRHAKAV 719 Query: 436 ELALGY 441 + Y Sbjct: 720 NFGIVY 725 >gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A] gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A] Length = 986 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 10/131 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q +T +S+P+ I S +R + + KL+ AD + IE R+ Sbjct: 696 RVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQKDWKLLSADYSQIELRI 755 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 L ++GE+ A+ ED++ T F + D+R IGK + + Y GA Sbjct: 756 LTHLSGEEVLKNAYLKNEDVHSLTAKLLFE--KDAIDADERRIGKTINFGVIYGMGA--- 810 Query: 449 QKMASTTGLNL 459 Q+ A +TG++L Sbjct: 811 QRFARSTGVSL 821 >gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] Length = 896 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + S G + D + IE R+LA + + L+AF+ GED++ T A F + P Sbjct: 653 LRQAFLPSSGYIFISGDYSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPEL 712 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 V+++ R KV+ + Y G AF Sbjct: 713 VSREMRRQAKVINFGIIY--GMSAF 735 >gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] Length = 892 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLA 382 LP R H +Q T ++DP+ LQ I +R + G V AD + Sbjct: 613 LPETGRIHTSFNQTATATGRLSSTDPN-LQNIPIRTEEGRQIRKAFVPRPGWTFVSADYS 671 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E R+LA + + ++AFE ED++ T + F + P +T+D R K + + Y Sbjct: 672 QVELRILAHYSQDPILIEAFENDEDIHTRTASEVFQLFPEMITEDVRRQAKAINFGIVY 730 >gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029] gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138] gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029] gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138] Length = 870 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 108/488 (22%), Positives = 185/488 (37%), Gaps = 79/488 (16%) Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSAL 109 ++P +LK+ D+T +N +R A N I I L LA +NG Sbjct: 352 ILP-ILKDFFLREDLTFYGYN--LKRDC-HALLNAGIVIREISYDLALAEHLTNG----- 402 Query: 110 KAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 G + S + G E RF K + L P E + FGE+ + Sbjct: 403 ---GGKISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQY--FGEFVAYLPIIK 457 Query: 169 REIFKRL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 I + + LS E L + ++ G +DV L + + E L +E+ Sbjct: 458 DAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEI 517 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 L+ G + + ++L L+ E GL D ++T VL + + P ++ Sbjct: 518 YDLS-GRPFNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHP-----IIEKLL 571 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A R+ L+T V+A+ P Q R H DQ Sbjct: 572 AFRTIEKLLSTYVKAL--------------------------PKQVDSHTQRIHPSFDQT 605 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLVVADLAGIEARVLAWMAGEQ 396 DP+ I R ++ + + + AD + IE R LA ++ ++ Sbjct: 606 GAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQDK 665 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 AFE+GED++ T ++ F+V QV+K+QR K + + Y G +AF +A Sbjct: 666 SLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVY--GQQAF-GLAKVLK 722 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 +++ L++ + + + +F E + A +DL + T R R Sbjct: 723 ISIGEAQELIQAYFS--RYPEIAHFV----EETIQQAAKDLRVTTMLGR---------ER 767 Query: 517 VSELWNEL 524 + + WNE Sbjct: 768 IIDSWNEF 775 >gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068] gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068] Length = 966 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 11/160 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS------EGKKLVVADLAG 383 P R H L Q + + DP+ I I S EG KL+ AD + Sbjct: 679 PVTGRVHTSLKQDVAATGRLSSQDPNLQNIPVRTAEGRAIRSAFQPGIEGWKLMAADYSQ 738 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA +G+ +AF + D++ ++ + VAP VT + R K + + Y Sbjct: 739 IELRVLAHFSGDAALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSAKAINFGVIY-- 796 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 G F +A + G+ + A + A ++ ++F R Sbjct: 797 GQSPF-GLARSLGIENDEAAAFISAYFA--QYPGVDDFMR 833 >gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] Length = 920 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H +Q +T +SDP+ LQ I +R C I G AD + Sbjct: 642 PRTGRIHTSFNQTVTATGRLSSSDPN-LQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++ ++ ++AF G D++ T AR ++ +VT +R K + Y Sbjct: 701 IELRIMAHLSEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIY 758 >gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415] gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415] Length = 886 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF+ GED++ T R FN+A P VT + R Sbjct: 654 EDSVLLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRR 713 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 714 NAKAVNFGVVY 724 >gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168] gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168] Length = 928 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q +T ++DP+ LQ I +R I + +V AD + Sbjct: 650 PKTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIPPKDHVIVSADYSQ 708 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 709 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIY-- 766 Query: 444 GAKAF 448 G AF Sbjct: 767 GMSAF 771 >gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46] gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46] Length = 935 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 P+ R H +Q +T +S+P+ I I D +R I +G AD + I Sbjct: 657 PKTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 716 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ + AF +G D++ T A+ + V +VT D R K + Y Sbjct: 717 ELRIMAHLSEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 773 >gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16] gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16] Length = 941 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 P+ R H +Q +T +S+P+ I I D +R I +G AD + I Sbjct: 663 PKTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 722 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ + AF +G D++ T A+ + V +VT D R K + Y Sbjct: 723 ELRIMAHLSEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 779 >gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20] Length = 945 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 67/158 (42%), Gaps = 31/158 (19%) Query: 289 LKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 +KL VE A+ DGR+ T Q A+ TGR S QN+P HEE +I Sbjct: 651 IKLRQTVEGLRKAIQPDGRIHTTFQQTIAA-TGRLSSTDPNLQNIPA---RHEEGMRI-- 704 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403 R EG + L+ AD + IE R++A ++ +Q + AF Sbjct: 705 --------------------REAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIDAFR 744 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +GEDL+ A + VT QR+ K M L Y Sbjct: 745 SGEDLHRYVAALVHGIDVEDVTAQQRSHVKAMSYGLAY 782 >gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5] Length = 958 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 8/124 (6%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAGI 384 R R H +Q +T +++P+ I + +R I S+ + L++ AD + + Sbjct: 680 RTGRIHTSFNQAVTATGRLSSTNPNLQNIPVREEMGRRIRRAFIPSDEEHLLLSADYSQV 739 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G++ + AF GED++ T A+ FN +VT ++R K + Y G Sbjct: 740 ELRLMAHLSGDESLIAAFAHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIY--G 797 Query: 445 AKAF 448 AF Sbjct: 798 ISAF 801 >gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] Length = 923 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P H +Q IT +S+P+ LQ I +R I G + AD + Sbjct: 645 PETGHIHTSFNQTITTTGRLSSSNPN-LQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQ 703 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF G D++ T A+ + +VT+++R+ K + Y Sbjct: 704 IELRIMAHLSGDPHMIEAFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANFGIIY 761 >gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] Length = 920 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 +R L + G + P PR H +Q T +SDP+ LQ I Sbjct: 616 VRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLSSSDPN-LQNIPVR 674 Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R C I +G AD + IE R++A ++G++ ++AF G D++ T A+ + Sbjct: 675 TDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIW 734 Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441 + +VT QR K + Y Sbjct: 735 HEDIDKVTDAQRKKAKQANFGIIY 758 >gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] Length = 971 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 28/157 (17%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +TL M+ +GR+ + + ++ TGR S QN+P R+ E Sbjct: 682 DTLPHHMDENGRIHTSFS-MASTTTGRLSSSEPNLQNIP--VRTEE-------------- 724 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R+ +A +GKKL+ AD + IE R+LA +A AF+ G D++ Sbjct: 725 ---------GRAIRTAFVAPKGKKLLSADYSQIELRILAHIADIPQLKDAFQNGVDIHAM 775 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 T + FNV + R K + + Y G AF Sbjct: 776 TASEMFNVPVEGMEPSVRRRAKAINFGIIY--GISAF 810 >gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311] gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311] Length = 994 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 12/132 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I S +R + +G L+ AD + IE Sbjct: 703 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQDGWTLLSADYSQIEL 761 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ G+D++ T AR + +V+ D+R +GK + + Y GA Sbjct: 762 RILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LDKDEVSPDERRLGKTINFGVIYGMGA- 818 Query: 447 AFQKMASTTGLN 458 Q+ A TG++ Sbjct: 819 --QRFARETGVS 828 >gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R] Length = 941 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 P+ R H +Q +T +S+P+ I I D +R I +G AD + I Sbjct: 663 PKTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQI 722 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ + AF +G D++ T A+ + V +VT D R K + Y Sbjct: 723 ELRIMAHLSEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIY 779 >gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4] gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4] Length = 868 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 364 VRSCVIASEGKKLVV--ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A EG V+ AD + IE RVLA ++ + +AF GED++ T A F V+P Sbjct: 623 IRQAFVA-EGPDYVLLSADYSQIELRVLAHLSEDPGLCEAFVKGEDIHARTAAEIFGVSP 681 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT + RA KV+ + Y Sbjct: 682 QEVTPEMRAKAKVVNFGIVY 701 >gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali] Length = 875 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF---QKMASTTG 456 +T + R K + + Y G AF +++ +T G Sbjct: 698 LTSEHRRKAKAINFGIIY--GISAFGLAKQLNATNG 731 >gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] Length = 909 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 32/170 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 F + A R A + ++ L+ ++ +DGR+ T Q + A TGR S QN+P Sbjct: 604 FLQHLLAHRDATRLKVTVDGLLNSVAADGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 661 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 + + +R + EG L+ AD + IE R++A Sbjct: 662 TEAGRR-------------------------IRDGFVVGEGYADLMTADYSQIEMRIMAH 696 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ + ++AF TGEDL+ +R+F+V +VT + R K M L Y Sbjct: 697 LSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYGLAY 746 >gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220] gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220] Length = 928 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 9/124 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 + R H Q +T ++DP+ LQ I +R IA E +V AD + I Sbjct: 651 KTGRVHTSYHQAVTATGRLSSTDPN-LQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQI 709 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y G Sbjct: 710 ELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIY--G 767 Query: 445 AKAF 448 AF Sbjct: 768 MSAF 771 >gi|226323296|ref|ZP_03798814.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758] gi|225208486|gb|EEG90840.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758] Length = 162 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ---VTKDQRAIGKVMELALGYQG 443 RV+A +A E W+ + F+ G D+Y T+ ++ F+V P + + R GK+ +LALGY G Sbjct: 35 RVIAHLARESWRAEVFKNGGDIYCTSASQMFHV-PVEKHGINGHLRQKGKIADLALGYGG 93 Query: 444 GAKAFQKMAS 453 A + M + Sbjct: 94 SVGALKAMGA 103 >gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] Length = 886 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 14/188 (7%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT ++DP+ P+++ + +R I +G V AD + +E R Sbjct: 611 GRIHGTFNQTITATGRISSTDPNLQNIPMRMELGRLIRKAFIPQDGFVFVDADYSQVELR 670 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA ++ + AF+ D++ TT + F V +VT QR K + + Y G A Sbjct: 671 VLAHLSDDSVMKNAFQNNIDIHSTTASEVFGVPIDEVTPLQRRHAKAVNFGIVY--GISA 728 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 F ++ G++ + + E++ D + + + A E+ ++ T R++ Sbjct: 729 F-GLSEDLGISRKEASDFI------EKYYDTYKSIKTYLDGQVKFAKENGYVKTMFGRIR 781 Query: 508 KAWRQKHS 515 K S Sbjct: 782 PIPELKSS 789 >gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120] gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120] Length = 977 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 10/143 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 P R H + +Q T +S+P+ I S +R + G + AD + I Sbjct: 684 PDTQRVHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMAAADYSQI 743 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E ++A++ ED++ T F V D+R I K + + Y G Sbjct: 744 ELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVFE--KEDVNSDERRIAKTINFGVIYGMG 801 Query: 445 AKAFQKMASTTGLNLNTFAHLVK 467 + F + +TG++ N +K Sbjct: 802 SLKFSR---STGIDKNVANEFIK 821 >gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] Length = 923 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P H +Q +T +S+P+ LQ I +R I EG + AD + Sbjct: 645 PETGHIHTSFNQTVTATGRLSSSNPN-LQNIPVRNEDGKEIRKAFIPDEGCEFFSADYSQ 703 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF +D++ T A+ + VT++QR+ K + Y Sbjct: 704 IELRIMAHLSGDPHMIEAFRANQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIY 761 >gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 950 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++G++ ++AF +G D + Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYV 758 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787 >gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50] gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50] Length = 904 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 11/157 (7%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G S+ P P R H Q +SDP+ LQ I Sbjct: 605 LEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAG 663 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 VR IA +GK L+ AD + IE R++A ++ + +AF GED++ T + F V Sbjct: 664 RRVREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPL 722 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 A+V +QR K + L Y G F +AS G+ Sbjct: 723 AEVGAEQRRAAKAINFGLIY--GMGVF-GLASNLGIT 756 >gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 374 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Query: 334 RSHEELDQIITHLPTSITSDPDP-LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 R H + QI PT S P LQ I +R S+G ++VAD + IE R+ A Sbjct: 110 RIHSQFRQI--GAPTGRMSSSKPNLQNIPPELRVLFRPSKGYSMIVADYSQIELRIAAEY 167 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ + AF+ G+DL+ T + + ++TK++R + K + L Y Sbjct: 168 TNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQLAKAINFGLIY 216 >gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] Length = 861 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS------DCVRSCVIASEGKKLVVAD 380 +++ + + H +QI T +S+P+ LQ IS +R +AS L+ AD Sbjct: 580 KHILKDGKIHTIFNQIQTQTGRLSSSEPN-LQNISVRDEEGKVIRKAFVASPQHTLMSAD 638 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA MA E+ ++AF G D++ T + F+V V + R K + + Sbjct: 639 YSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNMRRSAKTVNFGIV 698 Query: 441 Y 441 Y Sbjct: 699 Y 699 >gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822] gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis] Length = 904 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 11/135 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +SDP+ LQ I VR IA +GK L+ AD + Sbjct: 627 PATGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAGRRVREAFIAEQGK-LLSADYSQ 684 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + +AF GED++ T + F V A+V +QR K + L Y Sbjct: 685 IELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIY-- 742 Query: 444 GAKAFQKMASTTGLN 458 G F +AS G+ Sbjct: 743 GMGVF-GLASNLGIT 756 >gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24] gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24] gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24] Length = 907 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 630 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 688 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ + +AF +GEDL+ T A+ F+V + V + R K M L Y G Sbjct: 689 LRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAY--GL 746 Query: 446 KAF 448 AF Sbjct: 747 SAF 749 >gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36] gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36] Length = 951 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 PR R H +Q +T +S+P+ I I D +R I G + AD + I Sbjct: 673 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQI 732 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ ++AF +G D++ T A+ + + VT D R K + Y Sbjct: 733 ELRIMAHLSEDKNMIEAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIY 789 >gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366] gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366] Length = 939 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382 P+ R H +Q + +++P+ LQ I + ++ + E L+ AD + Sbjct: 660 PKTGRVHTSFNQAVAATGRLSSNNPN-LQNIPIRTERGREVRKAFIPRDENHILLSADYS 718 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ E+ L AF+ G D++ T AR + +A +VT QR K + + Y Sbjct: 719 QIELRIIADISKEENMLDAFKNGIDIHTATAARVYGIAIEEVTPTQRRNAKAVNFGIIY- 777 Query: 443 GGAKAF 448 G AF Sbjct: 778 -GQSAF 782 >gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 930 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H Q + ++DP+ LQ I +R IA + +V AD + Sbjct: 652 PKTGRVHTSYHQAVAATGRLSSTDPN-LQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Y Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINFGLIY-- 768 Query: 444 GAKAF 448 G AF Sbjct: 769 GMSAF 773 >gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] Length = 986 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 10/131 (7%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q +T +S+P+ I S +R + + KL+ AD + IE R+ Sbjct: 696 RVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQKDWKLLSADYSQIELRI 755 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 L ++GE+ A+ ED++ T F + D+R IGK + + Y GA Sbjct: 756 LTHLSGEEVLKNAYLKNEDVHSLTAKILFE--KDAIDADERRIGKTINFGVIYGMGA--- 810 Query: 449 QKMASTTGLNL 459 Q+ A +TG++L Sbjct: 811 QRFARSTGVSL 821 >gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 880 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T + TGR S QN+P + + + Sbjct: 594 LEGLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEAGRQ------------ 640 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 641 -------------IRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLH 687 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F+V +VT + R K M L Y G AF Sbjct: 688 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLVY--GLSAF 724 >gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] Length = 896 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 32/157 (20%) Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 D R+ + G + TGR S QN+P S S+ + Sbjct: 625 DNRIHTSFLHTGTA-TGRLSSKNPNLQNIPTKSDSNIQ---------------------- 661 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I +G KLV D + IE R+LA + ++ ++AFE D++ T + F Sbjct: 662 ---IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDLDIHYQTAVKIFGEE 718 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 A K++R I K + L Y G+K K+ T G+ Sbjct: 719 NA---KEKRGIAKSINFGLLYGMGSK---KLGETLGI 749 >gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 835 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L++ + DGR+ T S TGR S QN+P + + + Sbjct: 549 LEGLIKTIQPDGRIHTTFNQTVTS-TGRLSSTEPNLQNIPVRTEAGRQ------------ 595 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 596 -------------IRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLH 642 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F+V +VT + R K M L Y G AF Sbjct: 643 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLVY--GLSAF 679 >gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39] gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39] Length = 937 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382 P+ R H +Q + +++P+ LQ I + R+ + E L+ AD + Sbjct: 658 PKTGRVHTSYNQAVAATGRLSSNNPN-LQNIPIRTERGREVRRAFIPRDENHVLLSADYS 716 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ E+ L+AF G D++ T A+ + VA +VT QR K + + Y Sbjct: 717 QIELRIIADISKEENMLQAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKAVNFGIIY- 775 Query: 443 GGAKAF 448 G AF Sbjct: 776 -GQSAF 780 >gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2] Length = 888 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 27/170 (15%) Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 Q + + + + ++ V L T+ E DGR+ T Q A+ TGR S QN+P Sbjct: 585 QHLLAYRDSTKLKQTVVGLLKTVAE----DGRIHTTYQQTVAA-TGRLSSLDPNLQNIPV 639 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + S + +I +DP + D +L+ AD + IE R++A Sbjct: 640 RTESGRRIREIFI-------ADPH----VDDA-----------RLLTADYSQIEMRIMAH 677 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++G+ ++AF+ GEDL+ ++ F V +V R+ K M L Y Sbjct: 678 LSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVY 727 >gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 955 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++G++ ++AF +G D + Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYV 763 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792 >gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 929 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCVIASEGKKLVVADLA 382 P R H Q +T ++ P+ LQ I S ++ V +E L+ AD + Sbjct: 650 PHTGRIHTTFMQAVTATGRLSSNQPN-LQNIPIRTPRGSQIRKAFVPRNEDYTLLSADYS 708 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ E ++AF G+D++ +T A+ F V VTK+QR+ K + + Y Sbjct: 709 QIELRIIAALSEEDHMIEAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYG 768 Query: 443 GGAKAFQKMASTT 455 A + S + Sbjct: 769 VSAIGLSQQTSLS 781 >gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] Length = 886 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 36/246 (14%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A TL Q+ + KL +ELE Y L ++L LF + GL + T+T Sbjct: 507 ASTLIQLQNEFAVKL-KELEDKIYEQAGERFNLNSPKQLGHILFEKLGLPVLKKTKTGYS 565 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + + L++ + DGR+ LQ L A T Sbjct: 566 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--T 622 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P + +++ + + S+PD + SC Sbjct: 623 GRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPDG------YIFSC--------- 661 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVM 435 D + +E RVLA ++G+ +AF+TG D++ T + F++ +P QVT R K + Sbjct: 662 ---DYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAV 718 Query: 436 ELALGY 441 + Y Sbjct: 719 NFGIVY 724 >gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213] gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213] Length = 951 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++A N +D R+ T + A+ TGR S QN+P + E Sbjct: 662 VQTLIDATNKADERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAVGRE----------- 709 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +RS + EG + L+ D + +E R++A ++G++ ++AF +G D Sbjct: 710 --------------IRSVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADF 755 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + V Q+T DQR+ K M L Y Sbjct: 756 HKYVASMVYGVPVDQITGDQRSHVKAMSYGLAY 788 >gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] Length = 909 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q IT +++P+ P+++ + +R + EG + AD + IE RV Sbjct: 635 RIHGKFNQTITATGRISSTEPNLQNIPIRMELGRAIRKVFLPEEGYIFLDADYSQIELRV 694 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ ++ + A+E +D++ T + F + +VT QR K + + Y G AF Sbjct: 695 LAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRRDAKAVNFGIIY--GLSAF 752 >gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1] Length = 850 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 + V EG V AD + IE RVLA M+ E ++AF G D++ T + F++AP V Sbjct: 617 QGLVPVREGNVFVAADYSQIELRVLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFV 676 Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448 T + R + K++ L Y G AF Sbjct: 677 TPELRRVAKMINFGLLY--GMSAF 698 >gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] Length = 882 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 10/128 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDP-LQII------SDCVRSCVIASEG-KKLVVADLA 382 R R H Q T T S DP LQ I +R+ + EG + ++ AD + Sbjct: 605 RDGRIHTTFQQ--TAAATGRLSSTDPNLQNIHARTAEGRSIRAAFVPGEGYESIMTADYS 662 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G+ ++AF G DL+ +R + V +VT D R+ K M L Y Sbjct: 663 QIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVPEEKVTADDRSHIKAMSYGLAYG 722 Query: 443 GGAKAFQK 450 A K Sbjct: 723 LSAYGLSK 730 >gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington] gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi] gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 872 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G KL+ AD + IE R+L+ +A +AF ED++ T + FN+ + Sbjct: 635 IRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQIFNLQKHE 694 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 +T + R K + + Y G AF Sbjct: 695 LTSEHRRKAKAINFGIIY--GISAF 717 >gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 888 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 611 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIE 669 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ + +AF +GEDL+ T A+ F+V + V + R K M L Y G Sbjct: 670 LRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAY--GL 727 Query: 446 KAF 448 AF Sbjct: 728 SAF 730 >gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole] Length = 609 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 14/128 (10%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAW 391 R H ++ + TS+P + S VR C +A G+ + D E RVLA Sbjct: 343 RVHPGINPLQARTGRMSTSNPSAQNLPSGDWMVRRCFLADPGQIIASVDYRAQELRVLAA 402 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G+Q L+AFE DL+ T A R IGK+ + Y GGA K+ Sbjct: 403 LSGDQTMLRAFEEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAG---KL 450 Query: 452 ASTTGLNL 459 A+ G+ Sbjct: 451 ATNAGITF 458 >gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102] gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102] Length = 981 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 12/132 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I S +R + G L+ AD + IE Sbjct: 690 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQAGWTLLSADYSQIEL 748 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ +G+D++ T AR + +V+ D+R +GK + + Y GA Sbjct: 749 RILTHLSGEEVLQEAYRSGDDVHALT-ARLL-LDKDEVSADERRLGKTINFGVIYGMGA- 805 Query: 447 AFQKMASTTGLN 458 Q+ A TG++ Sbjct: 806 --QRFARETGVS 815 >gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] Length = 897 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 14/126 (11%) Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P E + I H + P P+ + S + E + Sbjct: 623 TGRLSSTDPNLQNIP----VRTEAGRQIRH---AFVVAPGPVAVGSGNI-------EFES 668 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++ ++ ++AF TGEDL+ +R+F V QV R+ K M Sbjct: 669 LMTADYSQIEMRIMAHLSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAM 728 Query: 436 ELALGY 441 L Y Sbjct: 729 SYGLAY 734 >gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] Length = 887 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 35/230 (15%) Query: 220 QELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA 273 +ELE Y L ++L LF + GL + T+T T VL K +P Sbjct: 523 KELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIV 582 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRP 332 ++ + R A + + L++ + DGR+ LQ L A TGR S QN+P Sbjct: 583 SEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA--TGRLSSVDPNLQNIP-- 637 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R+ EE QI + S+PD + SC D + +E RVLA + Sbjct: 638 TRT-EEGKQIRKAF---VPSEPDG------YIFSC------------DYSQVELRVLAHV 675 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 +G+Q +AF+TG D++ T + F++ +P VT R K + + Y Sbjct: 676 SGDQNMQEAFKTGYDIHSHTAMKIFHLDSPKDVTPLMRRHAKAVNFGIVY 725 >gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] Length = 997 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 70/312 (22%), Positives = 115/312 (36%), Gaps = 88/312 (28%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA +G +LV AD + IE RVLA +A +AF G D++ T + FNV Sbjct: 754 IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 813 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 + + R K + + Y G AF L S P E+A N+ + Sbjct: 814 MPSEVRRRAKAINFGIIY--GISAF---------------GLANQLSIPR--EEASNYIK 854 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D T KA+ ++H V ++ Sbjct: 855 KYFERFP--GIRDYIEET------KAYAREHGFVETIF---------------------- 884 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 GR + Y D+ ++ N + R + +L Q Sbjct: 885 ---------------------GRRIHYPDIRSS----NPSIRAFNERASINARL-----Q 914 Query: 604 AVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSN 654 + DI+ M + K ++L VHDE++ ET D + E ++ H+M + Sbjct: 915 GTAADIIRRAMVRMDEALEKAKLSARMLLQVHDELIFETVDAEVEATIPIVRHVMENAAM 974 Query: 655 PSWAKGLPLKAE 666 P+ + +PL + Sbjct: 975 PAVSMSVPLHVD 986 >gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] Length = 932 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGK LV D + IE R+LA +A +AFE G+D++ T + F+V Q Sbjct: 692 IREAFVAPEGKVLVALDYSQIELRILAHIAQIDALKEAFERGDDIHAMTASEMFDVPMDQ 751 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 752 MTPEIRRNAKAINFGVIY 769 >gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168] gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168] Length = 926 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 3/104 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A G +L+ AD + IE +LA ++G+ AF G D++ T A F V P Sbjct: 687 IRLAFTAEPGCQLISADYSQIELVILAHLSGDPNLCAAFSGGTDVHRATAALIFGVQPDA 746 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 VT D R K + + Y G AF ++A G+ A ++ Sbjct: 747 VTPDMRRTAKTINFGVMY--GMSAF-RLAGALGIPRTQAAEFIE 787 >gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus] gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus] Length = 605 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 153/677 (22%), Positives = 235/677 (34%), Gaps = 185/677 (27%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAHN 72 D+ G+ + E CV FA+ +DD + L D V + + Q + E + TI+ HN Sbjct: 40 DIETPGLDRAFEINCVT-FAWRWDDGSIHSVLLDPVGNTLHRQACIDLYERAE-TIILHN 97 Query: 73 SYFERTVLK--ACFNL--DIPIHRWICTLVLARSNGLPSALKAVGEALK------LSSQK 122 + F+ L+ F +I I++ + TL+LAR + LP V ++L L Sbjct: 98 APFDIPALRHAGLFGTSPNIAINKVVDTLLLARFS-LPDV--TVSKSLTALSIRYLGLSD 154 Query: 123 MEEGKELIARFCKGETHECLYDR---NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 ++G ++ +T + Y+ P +R D T +LEPL Sbjct: 155 FKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVG-------AMADTIATL----KLEPLL 203 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK- 238 W LD D G D L V R L + + L +R E+ Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263 Query: 239 ---------LKTWLFLETGL--------HLEDLTETTCQ--RVLSSNKKLTPQAIQVFNN 279 L LE G +L ++ + R + K T + F++ Sbjct: 264 DAERIQHEALLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGFDH 323 Query: 280 ------RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 R A VL T VE + GR + LGAS TGR + + Q P+ Sbjct: 324 PLTIAQRKLAEVDKVLGYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPELQQFPKD 383 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R +I +G+ L D + IE +A M Sbjct: 384 ARP--------------------------------IITDDGQGLTSIDWSQIEPVTMANM 411 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 AG+ L FE GEDLY RS + +TK+ R I KV+ LA Y Sbjct: 412 AGDVGFLIPFEAGEDLY-EPIQRSCGL---PMTKEGRDIAKVVLLATMY----------- 456 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ +N A +K E A+ R M PE A W Sbjct: 457 ---GMGVNGLALKIKHTV-----ESAQQIRRQMLAAMPESA---------------KWMA 493 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + +++ + G+ I A R +LP V+R Sbjct: 494 RVQGIAD-------------QYGRIITAAGR-----------------ILPVDDGGVFRA 523 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHD 630 V YT VQ + D+LA ++ +AG + L +HD Sbjct: 524 V----------------NYT---------VQGSAYDVLASTIVRMERAGLGDHLQLAMHD 558 Query: 631 EIVCETPDTDEFNASML 647 E++ +T +DE ML Sbjct: 559 ELIVDTEVSDEVQQIML 575 >gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] Length = 886 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 29/187 (15%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASR 315 +T VL K +P ++ + R A + + L++ + DGR+ LQ L A Sbjct: 565 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQRDGRVHTRYLQTLTA-- 621 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + +++ + + S+PD + SC Sbjct: 622 TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VPSEPD------GYIFSC-------- 661 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 D + +E RVLA ++G+Q +AF+TG D++ T R F++ +P +VT R K Sbjct: 662 ----DYSQVELRVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKA 717 Query: 435 MELALGY 441 + + Y Sbjct: 718 VNFGIVY 724 >gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 923 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P H +Q IT +S+P+ LQ I +R I G + AD + Sbjct: 645 PETGHIHTSFNQTITTTGRLSSSNPN-LQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQ 703 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF G D++ T A+ + +VT+++R+ K + Y Sbjct: 704 IELRIMAHLSGDPHMIEAFREGHDIHAATAAKIYKKPLEEVTREERSKAKTANFGIIY 761 >gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56] Length = 877 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 112/290 (38%), Gaps = 88/290 (30%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + S+ L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + A+ Sbjct: 637 IRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAE 696 Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R K + + Y G F +A G+ +DA+N+ Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E +P I T E + + R K F +T ++ + Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ R R+ +N+ + Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP--DTDEFNA 644 Q + DIL M+N KA ++L VHDEI+ + P + DE A Sbjct: 798 QGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKA 847 >gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725] gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725] Length = 907 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 37/197 (18%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQFLG 312 +T + VL +KL +++ + + + A LK NT V+A+ +S RL T +G Sbjct: 586 STDEEVL---EKLKNDGVEIASYILEYRKYAKLK-NTYVDALPKLADSRDRLHTTFNQIG 641 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P ++ E + +R IA Sbjct: 642 TT-TGRLSSSNPNLQNIP--VKTDEGMK-----------------------IRQGFIADN 675 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAI 431 G L+ D + IE RVLA ++ ++ + A++ EDL+ T + F + +V+++QR I Sbjct: 676 GNVLMGIDYSQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIFELEDGEEVSREQRII 735 Query: 432 GKVMELALGYQGGAKAF 448 K + ++ Y G AF Sbjct: 736 AKTINFSIIY--GKTAF 750 >gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413] gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413] Length = 977 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 60/294 (20%), Positives = 117/294 (39%), Gaps = 41/294 (13%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ---ELESLTYGLVSSSRCLEK 238 EQ L + T+ G +D A H L+Q ++++ KL + EL + L S ++ Sbjct: 561 EQPLESVLATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQATELAGEKFNLGSP----KQ 616 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L LF + GL + ++ +++ S ++ + Sbjct: 617 LSYILFEKLGLSTK------------------------YSRKIQTGYSTDAATLEKLQEV 652 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD--- 355 + G + ++ S+ P P R H + +Q T +S+P+ Sbjct: 653 DETGFVNAITEYRTLSKLKSTYVDALPALVRPDTQRVHTDFNQTATSTGRLSSSNPNLQN 712 Query: 356 -PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 P++ S +R + G + AD + IE R+LA ++ E ++A++ ED++ T Sbjct: 713 IPIRTAFSRQIRKAFLPKSGWLMAAADYSQIELRILAHLSQEPLLVQAYQQNEDIHTVTA 772 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 F + D+R I K + + Y G+ F + +TG++ N +K Sbjct: 773 KLVFE--KDDINSDERRIAKTINFGVIYGMGSLKFSR---STGIDKNVANEFIK 821 >gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 956 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 518 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 577 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 578 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 637 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 638 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 693 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 694 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 728 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 729 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 786 Query: 445 AKAF 448 AF Sbjct: 787 MSAF 790 >gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] Length = 877 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 112/290 (38%), Gaps = 88/290 (30%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + S+ L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + A+ Sbjct: 637 IRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAE 696 Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R K + + Y G F +A G+ +DA+N+ Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E +P I T E + + R K F +T ++ + Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ R R+ +N+ + Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP--DTDEFNA 644 Q + DIL M+N KA ++L VHDEI+ + P + DE A Sbjct: 798 QGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKA 847 >gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 244 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 27/143 (18%) Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 SDGR+ T + A+ TGR S QN+P DP +I Sbjct: 13 SDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP--------------------NRDPAGREI 51 Query: 360 ISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 RS + EG + L+ +D + +E R++A ++G++ ++AF +G D + + + Sbjct: 52 -----RSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYG 106 Query: 419 VAPAQVTKDQRAIGKVMELALGY 441 V ++T DQR+ K M L Y Sbjct: 107 VPVDEITPDQRSHVKAMSYGLAY 129 >gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 242 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F+V Sbjct: 1 IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60 Query: 423 QVTKDQRAIGKVMELALGY 441 +VT + R K M L Y Sbjct: 61 EVTPELRRRVKAMSYGLAY 79 >gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17] gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17] Length = 943 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 41/218 (18%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLK----- 290 ++L+ LF + GL + +T ++ L A++ V N R +A+L+ Sbjct: 591 KQLQAVLFDDMGL--KPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETN 648 Query: 291 -----LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + +L++A+N DGR+ T + A+ TGR S QN+P + E Sbjct: 649 KLKQIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGRE------ 701 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +RS + EG + L+ +D + +E R++A ++G+ ++AF Sbjct: 702 -------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFR 742 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +G D + + + + +T DQR K M L Y Sbjct: 743 SGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 780 >gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] Length = 955 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++G++ ++AF +G D + Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYV 763 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792 >gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95] gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95] Length = 896 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +RS V A + L+ AD + IE RVLA + ++ + AF GED++ T A F V Sbjct: 665 IRSTVKAQKDDYVLLSADYSQIELRVLAHLTNDETLINAFNNGEDIHALTAAAIFGVKID 724 Query: 423 QVTKDQRAIGKVMELALGY 441 V + R +GKV+ +L Y Sbjct: 725 DVDYNMRRVGKVVNFSLVY 743 >gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis] Length = 875 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 +T + R K + + Y G AF Sbjct: 698 LTSEHRRKAKAINFGIIY--GISAF 720 >gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] Length = 883 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 9/151 (5%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCV-IASEGKKLV 377 P + P+ R H +Q + DP+ QI + VR +G + Sbjct: 599 LPKEINPKTGRIHPTFNQSVAATGRLSCQDPNLQQIPIRTPLGREVRKAFRPEKQGWSYL 658 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA + + + AFE ED++ T A N+ QVTK+QR K + Sbjct: 659 SADYSQIELRLLAHFSEDPTLISAFENNEDIHTHTAATVLNIPLEQVTKEQRRQAKAVNF 718 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + Y G +A+ ++ G++L + +KT Sbjct: 719 GILY--GQQAW-GLSKELGISLEEASAFIKT 746 >gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 951 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 PR R H +Q +T +S+P+ I I D +R I G + AD + I Sbjct: 673 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQI 732 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ + AF +G D++ T A+ + + VT D R K + Y Sbjct: 733 ELRIMAHLSEDKNMIDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIY 789 >gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24] gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24] Length = 955 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 VR + SEG + L+ AD + IE R++A ++G+ ++A+ GEDL+ + F+V Sbjct: 714 VRGIFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTD 773 Query: 423 QVTKDQRAIGKVMELALGY 441 QVT R+ K M L Y Sbjct: 774 QVTSAMRSKVKAMSYGLAY 792 >gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10] gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10] Length = 878 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382 P+ + H +Q +T +++P+ LQ I R+ V + G KL AD + Sbjct: 599 PKTGKIHTIFNQAVTQTGRLSSTEPN-LQNIPVRLEEGRKIRRAFVPSKPGSKLFAADYS 657 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA ++ ++ + AF+ G D++ T + F V +VT + R K + + Y Sbjct: 658 QIELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAVNFGIVY 716 >gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4] gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4] Length = 959 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 580 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789 Query: 445 AKAF 448 AF Sbjct: 790 MSAF 793 >gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] Length = 755 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 PQ + + H +Q+ T + +P+ LQ + R ++A E ++ D + IE Sbjct: 431 PQLIKKDGLLHGSFNQVATVTGRFASREPN-LQNLPPRARRLIVAPEDSLILGVDFSQIE 489 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGY 441 RVLA M+G+ + + G+DLY T +R F V+ + D R + KV LA+ Y Sbjct: 490 PRVLAHMSGDPHLQEPYLKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMY 547 >gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 896 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379 P+ L R H +Q T +SDP+ LQ I +R IA + +V A Sbjct: 613 PKMLDVNGRVHTSYNQTGTVTGRLSSSDPN-LQNIPIKSPEGRKIRQAFIAEQEFCVVAA 671 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++ ++ LKAF G D++ T A ++ VT +QR K + L Sbjct: 672 DYSQIELRIMAHLSKDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGL 731 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 732 IY--GMSAF 738 >gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] Length = 953 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGIE 385 R R H +Q +T +S+P+ I I D +R I +G + AD + IE Sbjct: 676 RTGRIHTSFNQAVTSTGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIE 735 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++ ++ + AF +G D++ T A+ + + +VT D R K + Y Sbjct: 736 LRIMAHLSEDKNMIDAFLSGHDIHAATAAKIYKIDIEEVTSDMRRKAKTANFGIIY 791 >gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010] gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010] Length = 944 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 41/218 (18%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLK----- 290 ++L+ LF + GL + +T ++ L A++ V N R +A+L+ Sbjct: 592 KQLQAVLFDDMGL--KPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETN 649 Query: 291 -----LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + +L++A+N DGR+ T + A+ TGR S QN+P + E Sbjct: 650 KLKQIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGRE------ 702 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +RS + EG + L+ +D + +E R++A ++G+ ++AF Sbjct: 703 -------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFR 743 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +G D + + + + +T DQR K M L Y Sbjct: 744 SGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 781 >gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] Length = 958 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGI 384 PR R H +Q +T +S+P+ I I D +R I G + AD + I Sbjct: 680 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQI 739 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ + AF +G D++ T A+ + + VT D R K + Y Sbjct: 740 ELRIMAHLSEDKNMIDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIY 796 >gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec] gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec] Length = 911 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q+I ++DP+ LQ I +R + +G + L+ AD + IE Sbjct: 634 GRIHTTFNQMIAATGRLSSTDPN-LQNIPIRTPQGRQIRQAFVVGQGYETLLTADYSQIE 692 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++G+ ++AF +GEDL+ A++F + ++V + R K M L Y G Sbjct: 693 MRLMAHLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLAY--GL 750 Query: 446 KAF 448 AF Sbjct: 751 SAF 753 >gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1] Length = 959 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 71/310 (22%), Positives = 117/310 (37%), Gaps = 45/310 (14%) Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDV 201 A + Y D +T +F R +++ Q L++L+ + G +D Sbjct: 515 AMDVASHYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574 Query: 202 ALAHTLNQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 L+ D + L E E + + L S + E L L + G + T Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 + VLS K+ I V S+ +TL A + GR+ T + TGR Sbjct: 635 SEAVLS---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGR 690 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 S QN+P I +D L +R IA +G+ ++ Sbjct: 691 LSSSDPNLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILA 725 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A +G++ ++AF D++ T A ++VT +R K + Sbjct: 726 ADYSQIELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFG 785 Query: 439 LGYQGGAKAF 448 L Y G AF Sbjct: 786 LLY--GMSAF 793 >gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8] Length = 956 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 518 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 577 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 578 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 637 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 638 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 693 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 694 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 728 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 729 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 786 Query: 445 AKAF 448 AF Sbjct: 787 MSAF 790 >gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] Length = 882 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 37/237 (15%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L LFL+ L T+T + + L+ Q Q+ N + + A LK NT V+ Sbjct: 538 KQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYRKLAKLK-NTYVD 596 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + P+ + R H QI T +SDP+ Sbjct: 597 PI---------------------------PKMVKFGDRIHTCYHQIGTVTGRLSSSDPNL 629 Query: 357 LQIISDC-----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R IA +G KL+ D + +E RVLA ++ ++ +KA++ +DL+ Sbjct: 630 QNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSV 689 Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 T + F + +V+++QR + K++ ++ Y G F +A G+++ A +K Sbjct: 690 TAKKIFELEEKEEVSREQRTMAKIINFSIIY--GKTPF-GLAKELGISVKDAAEYIK 743 >gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331] Length = 903 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 626 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIE 684 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ + ++AF +GEDL+ T ++ F V + V + R K M L Y G Sbjct: 685 LRVMAHLSEDAGLIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAY--GL 742 Query: 446 KAF 448 AF Sbjct: 743 SAF 745 >gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50] Length = 263 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 24 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 83 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 84 VTSEQRRSAKAINFGLIY--GMSAF 106 >gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] Length = 982 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVIASEG-KKLVVADLA 382 P R H +Q + + DP+ LQ I + +RS + EG + L+ D + Sbjct: 702 PADERIHTTFEQTVAATGRLSSVDPN-LQNIPNRNAAGREIRSAFVPGEGFESLMSCDYS 760 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E R++A ++G++ ++AF++G D + + V Q+T DQR+ K M L Y Sbjct: 761 QVELRIMAHLSGDESLIEAFKSGADFHKYVASLVHGVPVDQITPDQRSHVKAMSYGLAY 819 >gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 959 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 580 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789 Query: 445 AKAF 448 AF Sbjct: 790 MSAF 793 >gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic] gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic] Length = 875 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +T + R K + + Y A K + T Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729 >gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7] Length = 956 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 518 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 577 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 578 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 637 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 638 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 693 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 694 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 728 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 729 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 786 Query: 445 AKAF 448 AF Sbjct: 787 MSAF 790 >gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] Length = 968 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G L+ AD + IE R+LA +A AF GED++ T A F +AP + Sbjct: 729 IRRAFVAEPGHVLLAADYSQIELRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDK 788 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 V K+ R K + + Y G AF +A+ G+ Sbjct: 789 VDKEARRRAKTINFGIIY--GMSAF-GLAARLGIG 820 >gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] Length = 903 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 29/180 (16%) Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 T + V R R + + L++ + +DGR+ T A+ TGR S QN+ Sbjct: 594 TEHELPVLMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNI 652 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388 P R+ E +R + EG + L+ AD + IE RV Sbjct: 653 P--VRTDE-----------------------GRAIRRGFVVGEGFETLMTADYSQIELRV 687 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ + ++AF +GEDL+ T ++ F V V + R K M L Y G AF Sbjct: 688 MAHLSEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAY--GLSAF 745 >gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169] Length = 956 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 518 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 577 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 578 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 637 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 638 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 693 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 694 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 728 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 729 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 786 Query: 445 AKAF 448 AF Sbjct: 787 MSAF 790 >gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] Length = 878 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA-DLA 382 P+ R H Q +T ++DP+ LQ I S +R + G L+++ D + Sbjct: 599 PKTGRIHTHFQQTVTVTGRLSSTDPN-LQNIPARTEESRQIRRIFVPGAGYDLLMSCDYS 657 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E R+LA +A ++ L+AF G+D++ T A F V +VT R+ K + + Y Sbjct: 658 QVELRILACIAQDELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRSRAKAVNFGIVY 716 >gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5] gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5] Length = 875 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +T + R K + + Y A K + T Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729 >gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 906 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 629 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIE 687 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ + ++AF +GEDL+ T ++ F V + V + R K M L Y G Sbjct: 688 LRVMAHLSEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAY--GL 745 Query: 446 KAF 448 AF Sbjct: 746 SAF 748 >gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE] gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE] Length = 903 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 626 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIE 684 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ + ++AF +GEDL+ T ++ F V + V + R K M L Y G Sbjct: 685 LRVMAHLSEDAGLIEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAY--GL 742 Query: 446 KAF 448 AF Sbjct: 743 SAF 745 >gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614] gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614] Length = 889 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 364 VRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + G + L+ AD + IE R++A ++ + ++AF++G D + T AR F+V Sbjct: 648 IREGFVVGPGYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFHSITAARVFDVPAD 707 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 VT + RA K M L Y G AF Sbjct: 708 DVTVEMRAKIKAMNYGLAY--GLSAF 731 >gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1] Length = 959 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLD-------QTINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQL 580 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789 Query: 445 AKAF 448 AF Sbjct: 790 MSAF 793 >gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54] Length = 948 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 11/157 (7%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G S+ P P R H Q +SDP+ LQ I Sbjct: 649 LEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAG 707 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 VR IA +G L+ AD + IE R++A ++ + +AF GED++ T + F VA Sbjct: 708 RRVREAFIAEQGL-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVAL 766 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 A V+ +QR K + L Y G F +AS G+ Sbjct: 767 ADVSSEQRRAAKAINFGLIY--GMGVF-GLASNLGIT 800 >gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] Length = 907 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ P++I + +R + ++G + AD + IE R Sbjct: 632 GRIHTSFNQTITVTGRLSSTEPNLQNIPMRIELGRLIRKAFLPAKGCVFMDADYSQIELR 691 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA M+G++ ++A+ +D++ T ++ F++ +VT QR K + + Y Sbjct: 692 VLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVY 745 >gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405] gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405] Length = 936 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A +G+ L+ AD + IE +LA ++ +Q ++AF TG D++ T + F V Sbjct: 697 IREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNTGIDVHAKTASLIFAVDIKD 756 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 V++D R I K + + Y G AF+ +S Sbjct: 757 VSQDMRRIAKTINFGVMY--GMSAFRLASS 784 >gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica] Length = 921 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 684 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +T + R K + + Y A K + T Sbjct: 744 LTNEHRRKAKAINFGIIYGISAFGLAKQLNVT 775 >gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1] Length = 959 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 580 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789 Query: 445 AKAF 448 AF Sbjct: 790 MSAF 793 >gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] Length = 866 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R C+I S+ G AD + IE RVLA ++G+ ++ F + D++ T A F + Sbjct: 630 IRECLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHTETAAMIFGLPAD 689 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 VTK+ R K + L Y G F +AS G + NT Sbjct: 690 AVTKELRRSAKTVSFGLIY--GMSVF-GLASRLGTDRNT 725 >gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] Length = 943 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 41/218 (18%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLK----- 290 ++L+ LF + GL + +T ++ L A++ V N R +A+L+ Sbjct: 591 KQLQAVLFDDMGL--KPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETN 648 Query: 291 -----LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + +L++A+N DGR+ T + A+ TGR S QN+P + E Sbjct: 649 KLKQIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGRE------ 701 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +RS + EG + L+ +D + +E R++A ++G+ ++AF Sbjct: 702 -------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFR 742 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +G D + + + + +T DQR K M L Y Sbjct: 743 SGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 780 >gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672] gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672] Length = 791 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 26/142 (18%) Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 S GR+ + G + TGR S QN+P+ E Sbjct: 514 STGRIHTQFKQTGTA-TGRLSSVNPNLQNIPQKGELGSE--------------------- 551 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +RS ++ EG + D + IE R+LA ++ ++ AFE D++ T + F + Sbjct: 552 ----IRSAFVSKEGYSFLSIDYSQIELRILAHISDDENLKIAFEQDFDIHTMTAMKVFGL 607 Query: 420 APAQVTKDQRAIGKVMELALGY 441 +++T+D R I K + + Y Sbjct: 608 LESEITRDIRRIAKAVNFGIIY 629 >gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus] Length = 975 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 13/145 (8%) Query: 331 RPSRSHEELDQIITHL-----PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 R S H + I H P S + D L I R+ ++SEG + AD + IE Sbjct: 566 RLSAKHPNIQGISKHPIQITKPQSFKGEEDELSI---SPRTAFVSSEGYTFLAADFSQIE 622 Query: 386 ARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 R+LA ++G+ LK F+ E D++ T ++ +V+P +VT R K + A+ Y Sbjct: 623 LRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYGA 682 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKT 468 G +++A+ G+ + A +++ Sbjct: 683 GK---ERLAACLGVPVREAARFLES 704 >gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9] gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9] Length = 932 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 9/125 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +SDP+ LQ I VR +A G +V AD + Sbjct: 654 PDTGRVHTHYSQASVVTGRLASSDPN-LQNIPIRTDEGRRVREAFVAPAGSCIVSADYSQ 712 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+ + AF G D++ T + F V V+ +QR K + L Y Sbjct: 713 IELRIMAHLSGDAGLIAAFREGRDIHRATASEVFGVPLEAVSAEQRRYAKTINFGLIY-- 770 Query: 444 GAKAF 448 G AF Sbjct: 771 GMSAF 775 >gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss] gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14] gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg] Length = 866 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 E + AD + +E R LA ++ ++ +AF++GED++ T ++ FNV QVT+ QR Sbjct: 637 ENDYFLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQ 696 Query: 432 GKVMELALGYQGGAKAFQK 450 K + L Y A K Sbjct: 697 AKAVNFGLAYGQQAYGLSK 715 >gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii] gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] Length = 875 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +T + R K + + Y A K + T Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729 >gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1] Length = 959 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQL 580 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789 Query: 445 AKAF 448 AF Sbjct: 790 MSAF 793 >gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] Length = 903 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 27/139 (19%) Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362 RL T GA+ TGR S QN+P S D+ I Sbjct: 630 RLHTTFNQTGAA-TGRLSSSNPNLQNIPVKS------DEGIK------------------ 664 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I+ +G L+ D + IE RVLA ++ ++ +KA+ G DL+ T + F++ Sbjct: 665 -IRRGFISDKGNTLLAIDYSQIELRVLAELSKDETLIKAYSDGLDLHDLTAKKIFDI-DT 722 Query: 423 QVTKDQRAIGKVMELALGY 441 VT+ QR + K++ ++ Y Sbjct: 723 DVTRSQRTMAKIVNFSIIY 741 >gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291] Length = 913 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 32/170 (18%) Query: 277 FNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 F + A R A + ++ L+ ++ SDGR+ T Q + A TGR S QN+P Sbjct: 608 FLQHLLAHRDATRLKVTVDGLLNSVASDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPIR 665 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 + + R + +G +L+ AD + IE R++A Sbjct: 666 TEAGRR-------------------------TRDAFVVGDGYAELMTADYSQIEMRIMAH 700 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ + ++AF TGEDL+ +R+F V +VT + R K M L Y Sbjct: 701 LSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAY 750 >gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum] Length = 831 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 29/146 (19%) Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 E SDGRL G A+ TGR S QN+P + EL + Sbjct: 551 EGRGSDGRLHGQFNQTVAA-TGRLSSSRPNLQNIP----ARTELGLL------------- 592 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 VR C +A +G L+ AD + IE R+LA +G+ + +AF GED++ T A Sbjct: 593 --------VRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAAL 644 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGY 441 F VT + R K + + Y Sbjct: 645 LFG---EPVTSESRRRAKTINFGILY 667 >gi|238899051|ref|YP_002924733.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466811|gb|ACQ68585.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 130 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 R + +++ K L + +D R G L + GAS TGRWSG F PQNLPRPS Sbjct: 41 RQQLGKTSTAKYAALKALVMNDHRAHGLLMYHGAS-TGRWSGRHFQPQNLPRPS 93 >gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E] Length = 959 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 116/304 (38%), Gaps = 45/304 (14%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----QELWYLD-------QTINDRGYCVDVALAHTL 207 +Y D +T +F R +++ Q L++L+ + G +D L Sbjct: 521 QYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQL 580 Query: 208 NQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + D + L E E + + L S + E L L + G + T + VLS Sbjct: 581 SDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLS 640 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 K+ I V S+ +TL A + GR+ T + TGR S Sbjct: 641 ---KIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQGRVH-TSYHQALTSTGRLSSSDP 696 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN+P I +D L +R IA +G+ ++ AD + I Sbjct: 697 NLQNIP-------------------IRTDTGRL------IREAFIAPKGRMILAADYSQI 731 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +G++ ++AF D++ T A ++VT +R K + L Y G Sbjct: 732 ELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLY--G 789 Query: 445 AKAF 448 AF Sbjct: 790 MSAF 793 >gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8] gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8] Length = 905 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 11/156 (7%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------S 361 L++ G S+ P P R H Q +SDP+ LQ I Sbjct: 606 LEYRGLSKLKSTYTDKLPRMINPNTGRVHTHYSQAAVITGRLASSDPN-LQNIPVRTEAG 664 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 VR IA +G L+ AD + IE R++A ++ + +AFE GED++ T + F V+ Sbjct: 665 RRVREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQRAFEAGEDIHRATASEVFGVSL 723 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V+ +QR K + L Y G F +AS G+ Sbjct: 724 EDVSTEQRRAAKAINFGLIY--GMGVF-GLASNLGI 756 >gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] Length = 877 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 62/281 (22%), Positives = 108/281 (38%), Gaps = 86/281 (30%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + S+ L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + A+ Sbjct: 637 IRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAE 696 Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R K + + Y G F +A G+ +DA+N+ Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E +P I T E + + R K F +T ++ + Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ R R+ +N+ + Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637 Q + DIL M+N KA ++L VHDEI+ + P Sbjct: 798 QGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILDVP 838 >gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford] gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford] Length = 872 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 635 IRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTACQIFNLQKHE 694 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 +T + R K + + Y G AF Sbjct: 695 LTSEHRRKAKAINFGIIY--GISAF 717 >gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica] gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] Length = 875 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +T + R K + + Y A K + T Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729 >gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] Length = 948 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%) Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R IA +G+K++ AD + IE R++A A + ++AF+ G D++ T A A Sbjct: 699 LIRGAFIAPKGRKVLSADYSQIELRLMAHFANDPVLIRAFQEGHDIHRATAAEILGKAFD 758 Query: 423 QVTKDQRAIGKVMELALGY 441 VT ++R K + L Y Sbjct: 759 DVTSEERRQAKAVNFGLLY 777 >gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5] gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5] Length = 875 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +T + R K + + Y A K + T Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729 >gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7] gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7] Length = 875 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +T + R K + + Y A K + T Sbjct: 698 LTSEHRRKAKAINFGIIYGISAFGLAKQLNVT 729 >gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2] gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2] Length = 935 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A +G++LV D + IE R+LA +A +AF G+D++ T + FNV Q Sbjct: 695 IREAFVAPKGRRLVSLDYSQIELRILAHVADIPALKQAFREGQDIHAMTASEMFNVPLDQ 754 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 755 MTPDIRRQAKAINFGVIY 772 >gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521] gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521] gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] Length = 956 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 27/155 (17%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L ++ DGR+ + TGR S QN+P E+ ++ Sbjct: 672 LKNVIDEDGRIHSNFN-QTVTTTGRLSSTDPNLQNIPIRHELGREIRKVFI--------- 721 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 PLQ EG LV D + IE RVLA +AG++ + AF+ D++ T Sbjct: 722 --PLQ-------------EGDTLVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIHTKTA 766 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + F V VT R+ K + + Y G AF Sbjct: 767 SEVFKVPVEDVTSLMRSRAKAVNFGIVY--GISAF 799 >gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] Length = 879 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ P+++ I +R + G + AD + IE R Sbjct: 604 GRIHGHFNQTITATGRISSTEPNLQNIPVRMEIGRQIRKVFVPKPGCVFLDADYSQIELR 663 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA M+ + + A+ T +D++ T ++ F+V +VT+ QR+ K + + Y Sbjct: 664 ILAHMSQDDKLIAAYNTAQDIHAITASQVFHVPLDEVTRTQRSNAKAVNFGIIY 717 >gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20] gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20] Length = 894 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAG 383 P + H +Q +T +++P+ P+++ +S +R I S+ L++ AD + Sbjct: 615 PYTGKIHSSFNQTVTATGRISSTEPNLQNIPIKLEMSRKIRKVFIPSDENYLLLDADYSQ 674 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA + ++ + AF ED++ +T A F + +VT R+ K + + Y Sbjct: 675 IELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGI 734 Query: 444 GAKAFQK 450 G + K Sbjct: 735 GDFSLAK 741 >gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2] gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis] gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2] Length = 922 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 685 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 744 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 +T + R K + + Y G AF Sbjct: 745 LTSEHRRKAKAINFGIIY--GISAF 767 >gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] Length = 936 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 27/152 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +++L+ ++ DGR+ T + A+ TGR + QN+P +RS + + Sbjct: 648 VDSLIASVADDGRIHTTFSQVAAA-TGRLASADPNLQNIP--ARSADGMR---------- 694 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R +A G + L+ AD + IE R++A ++ ++ + AF +GEDL+ Sbjct: 695 -------------IRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLH 741 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F A+VT QR+ K L Y Sbjct: 742 RTMASMVFGTPVAEVTAQQRSRIKATSYGLAY 773 >gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] Length = 288 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++G+Q + AF G+D++++T A F V+ +VT +QR K + L Y Sbjct: 1 IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY-- 58 Query: 444 GAKAF 448 G AF Sbjct: 59 GMSAF 63 >gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314] Length = 945 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 107/258 (41%), Gaps = 34/258 (13%) Query: 196 GYCVDVA-LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G VDVA L L +D + T+ ++ L + ++L+T LF G+ Sbjct: 559 GIAVDVATLEEQLETFID-QVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKK 617 Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRS---AVLKLNTLVEAMNSDGRLRGTLQFL 311 T+T + + L + F + + A R L L+ ++ SDGR+ T Sbjct: 618 TKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLIRSVGSDGRIHTTFNQT 677 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 AS TGR S QN+P + + + +RS + Sbjct: 678 VAS-TGRLSSTDPNLQNIPVRTEAGRK-------------------------IRSGFVVG 711 Query: 372 EG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ ++ F+V VT + R Sbjct: 712 EGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRR 771 Query: 431 IGKVMELALGYQGGAKAF 448 K M L Y G AF Sbjct: 772 RVKAMSYGLVY--GLSAF 787 >gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1] gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1] Length = 590 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 P + + +R+C + + G +L+VAD A IE RV A +A F G D + T A Sbjct: 343 PSEYTAPGLRACFVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVFRAGRDPHRATAAT 402 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLN 460 +V +R + K + + GA+ F+ A++ GL+L+ Sbjct: 403 LTGKPEPEVESHERKLAKAVNFGFLFGMGARRFRSYAASGYGLDLD 448 >gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1] gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 866 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 8/135 (5%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----L 376 P Q R H +Q+ T DP+ LQ I S+ RS A KK Sbjct: 583 LPKQINAGTQRIHPTFNQVGTVTGRLSCQDPN-LQNIPVRSERGRSLREAFRVKKDNDYF 641 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R LA ++ ++ +AF +GED++ T ++ FNV QVTK +R K + Sbjct: 642 LAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQAKAVN 701 Query: 437 LALGYQGGAKAFQKM 451 L Y A K+ Sbjct: 702 FGLVYGQQAYGLSKI 716 >gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] Length = 880 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 8/129 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKL 376 PP + H +Q++T +++P+ LQ I + ++ + +S+ L Sbjct: 587 LPPLINSETGKIHTSFNQMVTATGRLSSTNPN-LQNIPIRTEEGREIRKAFIPSSDNMIL 645 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE RV A ++G++ +AF +G D++ T + F V QV+ + R KV+ Sbjct: 646 LAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVIN 705 Query: 437 LALGYQGGA 445 L Y A Sbjct: 706 FGLAYGMSA 714 >gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14] gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14] Length = 889 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIE 385 R H +Q + ++DP+ LQ I +R + EG + L+ AD + IE Sbjct: 612 GRIHTTFNQTVAATGRLSSTDPN-LQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIE 670 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ + ++AF +GEDL+ T ++ F V + V + R K M L Y G Sbjct: 671 LRVMAHLSEDAGLIEAFTSGEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAY--GL 728 Query: 446 KAF 448 AF Sbjct: 729 SAF 731 >gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 903 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 29/180 (16%) Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 T + V R R + + L++ + +DGR+ T A+ TGR S QN+ Sbjct: 594 TEHELPVLMLRHREQAKLRVTVEGLIKTIATDGRIHTTFNQTVAA-TGRLSSTDPNLQNI 652 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388 P R+ E +R + EG + L+ AD + IE RV Sbjct: 653 P--VRTDE-----------------------GRAIRRGFVVGEGFETLMTADYSQIELRV 687 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ + ++AF +GEDL+ T ++ F V V + R K M L Y G AF Sbjct: 688 MAHLSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAY--GLSAF 745 >gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246] Length = 1454 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 353 DPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 DP+ Q+ D R C + G+ LV AD + IE R+ A + G++ L A++ GEDL+ T Sbjct: 1213 DPNLQQLPRDPRFRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQKGEDLHTT 1272 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 T AR+ + VTK R + K + L Y GAKA Sbjct: 1273 T-ARAV-LGKTDVTKADRQLSKSLNFGLLYGMGAKALA 1308 >gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498] Length = 968 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 75/352 (21%), Positives = 130/352 (36%), Gaps = 83/352 (23%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P LP R H + T L ++S LQ I +R +AS+G L+ Sbjct: 680 LPSYILPTTGRVHTNYS-LATTLTGRLSSSEPNLQNIPVRTAEGRKIRKAFVASKGYLLL 738 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA +A +AF G+D++ T ++ F VA +T + R K + Sbjct: 739 SADYSQIELRILAHVADITALKEAFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINF 798 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y G F +AS G++ ++A ++ + E P IED Sbjct: 799 GIIY--GISPF-GLASQLGIS----------------RKEASDYIQLYFERFP--GIEDY 837 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 ER K R H + +TI Sbjct: 838 M-----ERTKIFAR-------------HHGYVETI------------------------- 854 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR + Y ++ +S + + G + I +A+ I E + Sbjct: 855 ------FGRRIHYPEIKTAKSQIRAFNERAAINAPIQGSAADIIRRAM---IQMENALEK 905 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN---PSWAKGLPLKAE 666 + ++L VHDE++ E P ++ ++L + N P+ + +PL+ + Sbjct: 906 ERLSAKMLLQVHDELIFEVPKSESTKTAILIKKVMENATMPALSLSVPLEVK 957 >gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 896 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVA 379 P+ L R H +Q T +SDP+ LQ I +R +A + +V A Sbjct: 613 PKMLDVNGRVHTSYNQTGTVTGRLSSSDPN-LQNIPIKSPEGRKIRQAFVAEQEFCVVAA 671 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++ ++ LKAF G D++ T A ++ VT +QR K + L Sbjct: 672 DYSQIELRIMAHLSKDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGL 731 Query: 440 GYQGGAKAF 448 Y G AF Sbjct: 732 IY--GMSAF 738 >gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] Length = 880 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ I + +R I +G + AD + IE R Sbjct: 605 GRIHSTFNQTITATGRISSTEPNLQNIPVRTELGRLLRKVFIPKDGFIFLDADYSQIELR 664 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA M+G++ ++A++ +D++ T ++ F++ +VT QR K + + Y Sbjct: 665 VLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTPLQRRNAKAVNFGIVY 718 >gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] Length = 871 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R I +G V AD + IE R Sbjct: 596 GRIHSKFNQTITATGRLSSTEPNLQNIPIRVELGRLIRKVFIPEDGFVFVDADYSQIELR 655 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA +G+ ++A++ +D++ T ++ F++ +VT QR K + + Y Sbjct: 656 VLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFDEVTDQQRRNAKAVNFGIVY 709 >gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583] gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583] Length = 880 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ I + +R I +G + AD + IE R Sbjct: 605 GRIHSTFNQTITATGRISSTEPNLQNIPVRTELGRLLRKVFIPKDGFIFLDADYSQIELR 664 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA M+G++ ++A++ +D++ T ++ F++ +VT QR K + + Y Sbjct: 665 VLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTPLQRRNAKAVNFGIVY 718 >gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 903 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 29/180 (16%) Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 T + V R R + + L++ + +DGR+ T A+ TGR S QN+ Sbjct: 594 TEHELPVLMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNI 652 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARV 388 P R+ E +R + EG + L+ AD + IE RV Sbjct: 653 P--VRTDE-----------------------GRAIRRGFVVGEGFETLMTADYSQIELRV 687 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ + ++AF +GEDL+ T ++ F V V + R K M L Y G AF Sbjct: 688 MAHLSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAY--GLSAF 745 >gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] Length = 960 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 28/153 (18%) Query: 291 LNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + TL++A+N +DG + T + A+ TGR S QN+P +R+ E D Sbjct: 671 VQTLIDAINRTDGHIHTTFEQTVAA-TGRLSSTDPNLQNIP--NRNAEGRD--------- 718 Query: 350 ITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 RS I +EG L+ AD + +E R++A +G++ + AF++G D Sbjct: 719 --------------TRSAFIPAEGFDALLSADYSQVELRLMADFSGDEALIDAFKSGADF 764 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + + ++ DQR+ K M L Y Sbjct: 765 HRYVASLVYGIPVDDISGDQRSHVKAMSYGLAY 797 >gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314] Length = 904 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L+ ++ SDGR+ T AS TGR S QN+P + + + Sbjct: 616 LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 662 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 663 -------------IRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 709 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F+V VT + R K M L Y G AF Sbjct: 710 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVY--GLSAF 746 >gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] Length = 874 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKK-LVVADLAGIEA 386 R H +Q +T +S+P+ I I +R + G ++ AD + IE Sbjct: 598 GRIHTHFNQTVTATGRLSSSEPNLQNIPIRTEIGRRIRELFVPGPGYDWIMSADYSQIEL 657 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA M+G+ + AF +D++ T A F V A+VT RA K + + Y Sbjct: 658 RVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRARAKAVNFGIVY 712 >gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] Length = 873 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAG 383 + R H +Q++T +SDP+ LQ I +R+ G LV AD + Sbjct: 595 KTKRIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQ 653 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++G++ +KAF G+D++ T A A VT ++R+ K + + Y Sbjct: 654 IELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGKAQEDVTSEERSHAKAINFGIIY 711 >gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228] gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228] Length = 847 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC IA EG + D + IE R+LA + ++ L AF+ ED++ T F + Sbjct: 617 KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHARTAIMIF----GES 672 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R+I K + L Y G K K NL A+L KT Sbjct: 673 NYETRSIAKSINFGLIYGMGYKTLSK-------NLKIEANLAKT 709 >gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 930 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 59/300 (19%), Positives = 122/300 (40%), Gaps = 27/300 (9%) Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 L EY D +T ++ ++ EPL + L + V+ L + L++I E+ Sbjct: 494 LIKEYASEDADITLQLKEKFEPLLEETATLKLAQE--------VEFPLVYVLSEI---EK 542 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 + +++ L+ + + L+ ++ + G+ + VL +L P+A + Sbjct: 543 NGVKIDVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVLFDKLQLDPKAKK 602 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + + +L L N ++ L F + P P Sbjct: 603 TKTGQYKTGEDVLLTL------ANKSDIVQDILDFRQLQKLKSTYVDALPSLINPNTGLI 656 Query: 336 HEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIEARV 388 H +Q + +++P+ LQ I + ++ + SE ++ AD + IE R+ Sbjct: 657 HTSYNQAVAATGRLSSTNPN-LQNIPIRTERGREVRKAFIPRSENNVILSADYSQIELRL 715 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ + L+AF+ G D++ T A+ + + +V+ DQR K + + Y G AF Sbjct: 716 MAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIY--GQSAF 773 >gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN] gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923] gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae] gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae] gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923] Length = 911 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 28/156 (17%) Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + ++ L+ A+ +DGR+ T A+ TGR S QN+P + + ++ Sbjct: 618 VTVDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQNIPIRTNAGRQIRD------- 669 Query: 349 SITSDPDPLQIISDCVRSCVIASEGK---KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + V+ SE +L+ AD + IE R++A ++ ++ ++AF TG Sbjct: 670 -----------------AFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLIEAFHTG 712 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 EDL+ +R+F + +T + R K M L Y Sbjct: 713 EDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAY 748 >gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] Length = 921 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ H +Q IT +SDP+ LQ I +R I G AD + Sbjct: 643 PKTGHIHTSFNQTITATGRLSSSDPN-LQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RV+A ++ + +K F G+DL+ T A + +VT+D+R K + Y Sbjct: 702 IELRVMAHLSQDAEMIKVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIY 759 >gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae] Length = 907 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 28/156 (17%) Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + ++ L+ A+ +DGR+ T A+ TGR S QN+P + + ++ Sbjct: 614 VTVDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQNIPIRTNAGRQIRD------- 665 Query: 349 SITSDPDPLQIISDCVRSCVIASEGK---KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + V+ SE +L+ AD + IE R++A ++ ++ ++AF TG Sbjct: 666 -----------------AFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLIEAFHTG 708 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 EDL+ +R+F + +T + R K M L Y Sbjct: 709 EDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAY 744 >gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14] Length = 871 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R + EG V AD + IE R Sbjct: 596 GRIHSKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPKEGCVFVDADYSQIELR 655 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA +G++ ++A+ D++ T ++ F+V +VT QR K + + Y Sbjct: 656 ILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVY 709 >gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] Length = 352 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 16/182 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +Q +T +S+P+ LQ I +R+ +A+ + AD + Sbjct: 73 PADGRVHTTFNQTVTATGRLSSSNPN-LQNIPIRTPEGRRLRAAFVAAAEHLFLAADYSQ 131 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 I+ RVLA +G+ +AF +D++ T A F V V+ D R + K + + Y Sbjct: 132 IDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGM 191 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A + + TF +E + R+MQE E A D ++GT Sbjct: 192 SAFGLAEQLRCSRKEAQTFID--------RYFELYQGVHRFMQEI-VEQARRDGWVGTLL 242 Query: 504 ER 505 +R Sbjct: 243 QR 244 >gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132] gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132] Length = 933 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 19/257 (7%) Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 V++ L H L+ D+ERT + ++E+L + + L K + +F G+ + Sbjct: 532 VELPLVHVLS---DMERTGVKIDVEALHDLSNTLQKDLAKTQEDIFQLAGMEFNVGSPKQ 588 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 +L + K+ + + + + LV +R L F S+ Sbjct: 589 LGEILFEHMKIDEKPKKTPTGQYATGE------DILVNYEADHEIVRKILDFRELSKLKS 642 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIAS 371 P R R H +Q + +++P+ LQ I + ++ + Sbjct: 643 TYVDALPTLISKRTGRIHTTYNQAVAATGRLSSTNPN-LQNIPIRTERGREIRKAFIPGG 701 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 E ++ AD + IE R++A +G++ L+AF+ G D++ T ++ F V+ +V D R Sbjct: 702 EEFTILSADYSQIELRIMADFSGDESMLEAFDNGMDIHAATASKVFGVSLEEVNSDMRRK 761 Query: 432 GKVMELALGYQGGAKAF 448 K++ + Y G AF Sbjct: 762 AKMVNFGIIY--GISAF 776 >gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] Length = 850 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q T +SDP+ LQ I +R I EG L+ AD + Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ ++ + AF+ D++ T A F V VT + R+ K + + Y Sbjct: 631 IELRILAHISEDERLINAFKNNVDIHSQTAAEVFGVDIDDVTPEMRSQAKAVNFGIVY 688 >gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12] gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12] Length = 934 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 11/139 (7%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV 378 PQ + P R H Q + ++DP+ LQ I +R IA +G + Sbjct: 652 PQMINPDTGRVHTNYAQAVAVTGRLASNDPN-LQNIPVRTAEGRRIREAFIAPKGWLIAS 710 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 +D + IE R++A ++ + L AF GED++ T A F V P +V+ DQR + KV+ Sbjct: 711 SDYSQIELRIMAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTPLEVSSDQRRMAKVINFG 770 Query: 439 LGYQGGAKAFQKMASTTGL 457 L Y G AF +A GL Sbjct: 771 LIY--GMSAF-GLARNLGL 786 >gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712] Length = 916 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 29/156 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DGR+ T A+ TGR S QN+P R+ E Sbjct: 631 LIKTIGADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 671 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ AD + IE RV+A ++ + ++AF +GEDL+ T Sbjct: 672 -------GRAIRHGFVVGEGFEALMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTV 724 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F V + V + R K M L Y G AF Sbjct: 725 ASQVFGVERSAVDAEMRRKIKAMSYGLAY--GLSAF 758 >gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] Length = 879 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC IA EG + D + IE R+LA + ++ L AF+ ED++ T F + Sbjct: 649 KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHARTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R+I K + L Y G K K NL A+L KT Sbjct: 705 NYETRSIAKSINFGLIYGMGYKTLSK-------NLKIEANLAKT 741 >gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136] Length = 971 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 13/136 (9%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382 P R H Q++ ++DP+ LQ I + ++ V EG L+ AD + Sbjct: 691 PLTHRVHTTFHQLMAATGRMASTDPN-LQNIPIRTDQGREIRKAFVPEKEGWVLMSADYS 749 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RV+A ++ + ++AF+ G D++ T A+ + VA +V + R K++ + Y Sbjct: 750 QIELRVMAELSADPAMMEAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIY- 808 Query: 443 GGAKAF---QKMASTT 455 G AF Q++ +T+ Sbjct: 809 -GISAFGLSQRLGNTS 823 >gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] Length = 894 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P +R H +Q +T +++P+ P+++ + +R I+ EG + + AD + I Sbjct: 616 PVTNRIHSSFNQTVTATGRISSTEPNLQNIPVRLEMGRRLRKVFISKEGHEFIDADYSQI 675 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA +A + + AF +D++ T + F V +VT R K + + Y Sbjct: 676 ELRVLAHIAKDDNLIDAFIKNQDIHTRTASEIFEVPMEEVTSLMRGDAKAVNFGIVY 732 >gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805] gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805] Length = 988 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 12/132 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I S +R + E L+ AD + IE Sbjct: 697 GRVHTDFNQAVTATGRLSSSNPN-LQNIPIRTEYSRRIRKAFLPQEHWTLLSADYSQIEL 755 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ G+D++ T AR + ++T D+R +GK + + Y GA Sbjct: 756 RILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LDKDEITADERRLGKTINFGVIYGMGA- 812 Query: 447 AFQKMASTTGLN 458 Q+ A TG++ Sbjct: 813 --QRFARETGVS 822 >gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099] gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099] Length = 1003 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 67/307 (21%), Positives = 115/307 (37%), Gaps = 78/307 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA +G +LV AD + IE RVLA +A +AF G D++ T + FNV Sbjct: 760 IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 819 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 + + R K + + Y G AF L S P E+A N+ + Sbjct: 820 MPSEVRRRAKAINFGIIY--GISAFG---------------LANQLSIPR--EEASNYIK 860 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I D T KA+ ++H V ++ Sbjct: 861 KYFERFP--GIRDYIEET------KAYAREHGFVETIF---------------------- 890 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 GR + Y D+ ++ N + R + +L Sbjct: 891 ---------------------GRRIHYPDIRSS----NPSIRAFNERASINARLQGTAAD 925 Query: 604 AVSRDIL-AEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWAK 659 + R ++ E ++ K ++L VHDE++ ET + + E ++ H+M + P+ + Sbjct: 926 IIRRAMVRMEEALDRAKLSARMLLQVHDELIFETVEAEVEATIPVVRHVMENAAMPAVSM 985 Query: 660 GLPLKAE 666 +PL + Sbjct: 986 SVPLHVD 992 >gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2] gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2] Length = 878 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + SE G +V AD + IE RVLA M+ ++ ++AF+ D++ TT + F+V Sbjct: 638 IRKAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTASDVFHVTEE 697 Query: 423 QVTKDQRAIGKVMELALGY 441 +VT D R K + + Y Sbjct: 698 EVTSDMRRAAKAVNFGIVY 716 >gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514] gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514] Length = 947 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 97/440 (22%), Positives = 169/440 (38%), Gaps = 62/440 (14%) Query: 30 VILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 +I AF F+ DP + Q + EN + V HN ++ VLK Sbjct: 392 LIGLAFAFEKQKGFYVAVPADPEEAREILQEFRAVFENEQIQKVGHNLKYDLAVLKWH-- 449 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + +H + +LA S P + +S + I + E + L Sbjct: 450 -GVGVHGKLFDTMLAHSLIEPEMRHGMD---YMSEVYLGYSPISITKLIGDEKSKQLNMA 505 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSSKEQELWYLDQTINDRGYCVDVALA 204 + P + A EY D VT +++++LEP L K QE + Y V+ L Sbjct: 506 DVPVAKVA-----EYAAEDADVTWQLWEKLEPLLKEKGQERVF---------YEVEAPLI 551 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV-L 263 L T ++ E G+ + L + T L E H + + Q L Sbjct: 552 PVL--------TAMEYE------GIKVDASALAEFSTQLSKEMANHEQTIYRLAGQEFNL 597 Query: 264 SSNKKLTPQAIQVFNNRMRASRSA--------VLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +S ++L ++ ++++ S +A TL++ ++ L + GA++ Sbjct: 598 NSPRQLG----EILFDKLKISENAKKTKTGQYATNEQTLMDLAADHEIVQRLLDYRGATK 653 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-------SDCVRSCV 368 P R H +Q +T + +P+ LQ I + ++ V Sbjct: 654 LKSTYADALPGTIWKPTGRVHTTFNQAVTTTGRLNSQNPN-LQNIPIRTEQGKEIRKAFV 712 Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 +E L+ AD + IE R++A ++ EQ L+ F D++ T AR + V QVT + Sbjct: 713 PRNEDYVLLSADYSQIELRIIAALSHEQGMLEDFGRKLDIHTATAARVYGVPLDQVTPEM 772 Query: 429 RAIGKVMELALGYQGGAKAF 448 R K++ + Y G AF Sbjct: 773 RRKAKMVNYGIAY--GISAF 790 >gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440] gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440] Length = 899 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 29/175 (16%) Query: 276 VFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 V + +R A LK ++ L+++++ DGR+ T A+ TGR S QN+P + Sbjct: 594 VLGHLLRHRDVAKLKTTVDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT 652 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + R+ V+ + + L+ AD + IE R++A ++ Sbjct: 653 EEGRRIR------------------------RAFVVGTGYECLLTADYSQIEMRIMAHLS 688 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ + AF +G D + T + F V VT DQR K M L Y G AF Sbjct: 689 ADEALIDAFNSGLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGLAY--GLSAF 741 >gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila] gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210] Length = 988 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 35/178 (19%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT----------- 412 +RS A +G KL+VAD +E R+LA M + ++AF+ G D + T Sbjct: 721 IRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEAFKMGGDFHSRTAMGMYPKLKEE 780 Query: 413 ---------YARSFNVAPAQVTKD----QRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 + +S PA + KD +R K+M ++ Y A F K + + Sbjct: 781 IEKGELLLEWDKSQGEPPAPLLKDKYSSERKKAKMMNFSIAYGKSAHGFSKDWNCS---- 836 Query: 460 NTFAHLVKTNSAPEEW-EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + A + W D + W QEN + A+E + T R + R HS+ Sbjct: 837 -----MKEAQEALDAWFADRKEVKEW-QENTKKIALEHGYTQTMMGRYRNLERLTHSK 888 >gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] Length = 879 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q IT +++P+ P+++ + +R + +G + AD + IE RV Sbjct: 605 RIHGKFNQTITATGRISSTEPNLQNIPIRMELGRAIRKVFLPEDGYVFLDADYSQIELRV 664 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ ++ + A+E +D++ T + F + +VT QR K + + Y G AF Sbjct: 665 LAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRRDAKAVNFGIIY--GLSAF 722 >gi|332259946|ref|XP_003279044.1| PREDICTED: DNA polymerase nu-like [Nomascus leucogenys] Length = 1502 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 12/159 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S H + I H P IT+ + +I++ R+ ++S+G + AD + IE Sbjct: 1173 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 1231 Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 R+LA ++G+ LK F+ E D++ T ++ +V QVT R K + A+ Y G Sbjct: 1232 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 1291 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +++A+ G+ + A ++ S ++++ ++F R Sbjct: 1292 K---ERLAACLGIPVQEAAQFLE--SFLQKYKKIKDFAR 1325 >gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] Length = 908 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T D R I K + + Y+ Sbjct: 729 ITPDLRRIAKSINFGIIYR 747 >gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] Length = 898 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + +G L+ AD + IE R++A ++G+ + AF G DL+ +R F VA + Sbjct: 657 IREVFVPGDGYDYLMTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAES 716 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 +VT QR+ K M L Y G AF Sbjct: 717 EVTPAQRSKIKAMSYGLVY--GLSAF 740 >gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1] gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1] Length = 887 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 29/187 (15%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASR 315 +T VL K +P ++ + R A + + L++ + DGR+ LQ L A Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA-- 622 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P + +++ + + ++PD + SC Sbjct: 623 TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VPTEPD------GYIFSC-------- 662 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 D + +E RVLA ++G+Q +AF+TG D++ T R F++ +P +VT R K Sbjct: 663 ----DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKA 718 Query: 435 MELALGY 441 + + Y Sbjct: 719 VNFGIVY 725 >gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL] gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL] Length = 850 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q T +SDP+ LQ I +R I EG L+ AD + Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ ++ + AF+ D++ T A F V VT + R+ K + + Y Sbjct: 631 IELRILAHISEDERLINAFKNNVDIHSQTAAEIFGVDIDDVTPEMRSQAKAVNFGIVY 688 >gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo] gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo] Length = 889 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 650 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 709 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T D R I K + + Y+ Sbjct: 710 ITPDLRRIAKSINFGIIYR 728 >gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62] gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62] Length = 932 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EGK LV D + IE R+LA +A +AF G D++ T + F+V Q Sbjct: 692 IREAFIAEEGKVLVALDYSQIELRILAHVADIPSLKQAFADGMDIHAMTASEMFDVPLDQ 751 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 752 MTSDIRRQAKAINFGVIY 769 >gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] Length = 863 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 7/122 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H +Q +T ++ P+ LQ I VR IA+ KL+ D + Sbjct: 590 PKDERVHTSFNQALTTTGRLSSTQPN-LQNIPIRTARGQQVRKAFIAAPRMKLLSVDYSQ 648 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA ++ + KAF D++ T A F V VT + R K + + Y Sbjct: 649 IELRILAHISEDPNLCKAFAEDLDIHAATAAEVFGVPLKDVTAEHRRSAKAVNFGIAYGQ 708 Query: 444 GA 445 GA Sbjct: 709 GA 710 >gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911] gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911] Length = 877 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGI 384 + + H +Q +T ++DP+ P+++ +R + SE G + AD + I Sbjct: 599 KTGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKGWVIFAADYSQI 658 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA +AG++ ++AF +D++ T F+V+ +VT + R K + + Y Sbjct: 659 ELRVLAHIAGDEKLIEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAVNFGIVY 715 >gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05] gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05] Length = 887 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 29/187 (15%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASR 315 +T VL K +P ++ + R A + + L++ + DGR+ LQ L A Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYLQTLTA-- 622 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR S QN+P +R+ EE QI + ++PD + SC Sbjct: 623 TGRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VPTNPD------GYIFSC-------- 662 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 D + +E RVLA ++G+Q +AF+TG D++ T R F++ +P +VT R K Sbjct: 663 ----DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKA 718 Query: 435 MELALGY 441 + + Y Sbjct: 719 VNFGIVY 725 >gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4] Length = 876 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 13/119 (10%) Query: 336 HEELDQIITHLPTSIT-----SDPDP-LQII------SDCVRSCVIAS-EGKKLVVADLA 382 HE+ D++ T ++T S DP LQ I +R + S EG + AD + Sbjct: 596 HEDSDKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWVIFAADYS 655 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA ++G++ ++AF+ ED++ T F+V+ VT + R K + + Y Sbjct: 656 QIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAVNFGIVY 714 >gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] Length = 1001 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G+KL+ AD + IE RVLA MA KAFE G D++ T + F Sbjct: 758 IRQAFIAEKGQKLISADYSQIELRVLAHMADIPQLKKAFEDGLDIHAMTASEMFGTPIEG 817 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R K + + Y G AF +A+ G++ +KT Sbjct: 818 MDPMVRRQAKAINFGIIY--GISAF-GLANQLGISRGEAGDYIKT 859 >gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 909 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 29/156 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DGR+ T A+ TGR S QN+P R+ E Sbjct: 624 LIKTIAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP--VRTDE---------------- 664 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ AD + IE RV+A ++ + ++AF +GEDL+ T Sbjct: 665 -------GRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDLGLIEAFTSGEDLHTTV 717 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F+V + V + R K M L Y G AF Sbjct: 718 ASQVFSVERSAVDAEMRRKIKAMSYGLAY--GLSAF 751 >gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] Length = 905 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGK-KLVVADLAG 383 R + H Q++T +++P+ LQ I +R + S G +L AD + Sbjct: 625 RDGKVHTTFQQMVTATGRLSSTEPN-LQNIPIRMEEGRKLRKVFVPSRGGWELFSADYSQ 683 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA + + ++F+TGED++ T + F V QVT D R K + L Y Sbjct: 684 IELRVLAHYSQDPILCQSFQTGEDVHARTASEVFGVPLEQVTPDMRRKAKAVNFGLMY 741 >gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] Length = 882 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 36/190 (18%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-----DGRLRGTLQFL 311 +T Q VL +KL ++ + N + + LK NT ++ + + GR+ Sbjct: 562 STAQDVL---EKLVDES-PIIENILEYRKLTKLK-NTYIDGLKALINEKTGRIHSRFNQT 616 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371 G S TGR S QN+P RS E +R +AS Sbjct: 617 GTS-TGRISSTEPNLQNIP--IRSEE-----------------------GRLIRGAFLAS 650 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 E LV D + IE RVLA ++ + ++AFE G D++ T + F+V VT R+ Sbjct: 651 EDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHGMDIHTKTASEVFHVDKEDVTDLLRSR 710 Query: 432 GKVMELALGY 441 K + + Y Sbjct: 711 AKAVNFGIVY 720 >gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] Length = 854 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 +G V AD + +E RVLA + E+ +AFE D++ T + FNV P VT + R Sbjct: 626 DGNIFVAADYSQVELRVLAHLCDEKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRF 685 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLN 458 KV+ L Y G +F +AS G+ Sbjct: 686 AKVVNFGLLY--GMSSF-GLASRLGIG 709 >gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 145 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 7 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 66 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 67 VTGEQRRSAKAINFGLIY--GMSAF 89 >gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] Length = 1009 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +RS IA+ GKKL+ AD + IE RVLA MA AF G D++ T + F V Sbjct: 766 IRSAFIAAPGKKLISADYSQIELRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKD 825 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 826 MPGEVRRRAKAI 837 >gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer] gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer] Length = 605 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 125/521 (23%), Positives = 188/521 (36%), Gaps = 113/521 (21%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKEALENTDVTIVAHN 72 D+ G+ + E CV FA+ +DD + L D V + + Q + E + TI+ HN Sbjct: 40 DIETPGLDRAFEINCVT-FAWRWDDGSIHSVLLDPVGNTLHRQACIDLYERAE-TIILHN 97 Query: 73 SYFERTVLK--ACFNL--DIPIHRWICTLVLARSNGLPSALKAVGEALK------LSSQK 122 + F+ L+ F +I I++ + TL+LAR + LP V ++L L Sbjct: 98 APFDIPALRHAGLFGTSPNIAINKVVDTLLLARFS-LPDV--TVSKSLTALSIRYLGLSD 154 Query: 123 MEEGKELIARFCKGETHECLYDR---NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 ++G ++ +T + Y+ P +R D T +LEPL Sbjct: 155 FKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVG-------AMADTIATL----KLEPLL 203 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK- 238 W LD D G D L V R L + + L +R E+ Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQEIVHRVMLRRTGKGLAVDHEYLTRYQEEK 263 Query: 239 ---------LKTWLFLETGL--------HLEDLTETTCQ--RVLSSNKKLTPQAIQVFNN 279 L LE G +L ++ + R + K T + F++ Sbjct: 264 DAERIQHEALLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGFDH 323 Query: 280 ------RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 R A VL T VE + GR + LGAS TGR + + Q P+ Sbjct: 324 PLTIAQRKLAEVDKVLGYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPELQQFPKD 383 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +R +I +G+ L D + IE +A M Sbjct: 384 ARP--------------------------------IITDDGQGLTSIDWSQIEPVTMANM 411 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 AG+ L FE GEDLY RS + +TK+ R I KV+ LA Y Sbjct: 412 AGDVGFLIPFEAGEDLY-EPIQRSCGL---PMTKEGRDIAKVVLLATMY----------- 456 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 G+ +N A +K E A+ R M PE A Sbjct: 457 ---GMGVNGLALKIKHTV-----ESAQQIRRQMLAAMPESA 489 >gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon] gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon] Length = 609 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISD--CVRSCVIASEGKKLVVADLAGIEARVLAW 391 R H ++ + TS+P + S VR C +A G+ + D E RVLA Sbjct: 343 RVHPGINPLQARTGRMSTSNPSAQNLPSGDWMVRRCFLADPGQIIASVDYRAQELRVLAA 402 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G+Q L+AF+ DL+ T A R IGK+ + Y GGA K+ Sbjct: 403 LSGDQTMLRAFKEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAG---KL 450 Query: 452 ASTTGLNL 459 A+ G+ Sbjct: 451 ATNAGITF 458 >gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37] gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37] Length = 934 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 39/78 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG LV D + IE R+LA MA +AF G D++ T + FNV + Sbjct: 694 IREAFVAPEGHTLVSLDYSQIELRILAHMADIDALKQAFRDGLDIHAMTASEMFNVPLDE 753 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 754 MTPDIRRQAKAINFGVIY 771 >gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 870 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R I EG V AD + IE R Sbjct: 595 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEEGYVFVDADYSQIELR 654 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA +G+Q + A+ +D++ T ++ F+ +VT+ QR K + + Y Sbjct: 655 ILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVY 708 >gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008] gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008] Length = 873 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIEA 386 R H +Q++T +SDP+ LQ I +R+ G LV AD + IE Sbjct: 598 RIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIEL 656 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R+LA ++G++ +KAF G+D++ T A A VT ++R+ K + + Y Sbjct: 657 RILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQDDVTSEERSHAKAINFGIIY 711 >gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 138 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + Sbjct: 5 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 64 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT +QR K + L Y G AF Sbjct: 65 VTGEQRRSAKAINFGLIY--GMSAF 87 >gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] Length = 887 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV-------RSCVIASEGKKLVV 378 P + + H Q +T ++DP+ LQ I + ++ V A EG +L Sbjct: 603 PTYIKEDGKIHSRFVQTLTQTGRLSSADPN-LQNIPARIEEGRRIRQAFVPAHEGWQLFG 661 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 AD + IE RVLA +A +Q + AF++GED++ T R F + P V Sbjct: 662 ADYSQIELRVLAHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTV 707 >gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] Length = 937 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + EG L+ D + IE R+LA +AG +AF G+D++ T + FNV + Sbjct: 697 IREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEE 756 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 757 MTSDIRRQAKAINFGVIY 774 >gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 PR R H +Q T DP+ I + +R IA EG LV D + I Sbjct: 555 PRTGRLHTRFNQTATATGRLCCCDPNLQNIPVRTPLGQRIRRGFIAEEGWLLVALDYSQI 614 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA ++G++ ++ F+ G D++ T + F V V R K + + Y Sbjct: 615 ELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671 >gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] Length = 937 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + EG L+ D + IE R+LA +AG +AF G+D++ T + FNV + Sbjct: 697 IREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEE 756 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 757 MTSDIRRQAKAINFGVIY 774 >gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] Length = 871 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R I +G + AD + IE R Sbjct: 596 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEDGYVFIDADYSQIELR 655 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA +G++ + A++ +D++ T ++ F+V +VT QR K + + Y Sbjct: 656 VLAHCSGDEQLINAYKEQKDIHRITASQVFHVPFGEVTDLQRRNAKAVNFGIVY 709 >gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] Length = 870 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R I EG V AD + IE R Sbjct: 595 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEEGYVFVDADYSQIELR 654 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA +G+Q + A+ +D++ T ++ F+ +VT+ QR K + + Y Sbjct: 655 ILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVY 708 >gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427] gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427] Length = 882 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 95/427 (22%), Positives = 169/427 (39%), Gaps = 73/427 (17%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLD-IPIHRWICTLVLARS 102 WD D VL E LE+ + H+S F+ +LK L+ + +I +L + Sbjct: 349 WDLT-DTEAKAVLIEFLESATYQKIVHDSKNFKHELLKVGLGLNGVCFDTFIAAYLLHPT 407 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 N S A E L ++ Q + + L+ + +T L D + N+ G+ + Sbjct: 408 N--KSYDLAELEELFINKQSLMNLENLLGKGKSQKTWLQLEDEERINN------LGKRSQ 459 Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE- 221 ++VT + + L+ +Q + Y +++ L L + +VE K+D E Sbjct: 460 LALSVTEAMKEALQ------------EQNMTRLFYDIEMPLIDVLFDM-EVEGIKVDPEG 506 Query: 222 -----------LESLTYGLVSSS------RCLEKLKTWLFLETGLHLEDLTET---TCQR 261 L++LT + ++ ++L LF + G+ T+T T Sbjct: 507 LRSYGEELQGLLDTLTTSIYEAAGESFNINSPKQLGVILFEKLGIPCAKKTKTGYSTAAE 566 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + K P Q+ R A + ++ L+ + ++ T + TGR S Sbjct: 567 VLEALKNDYPIVAQILEYRQYAKLKSTY-VDGLLNVLTEQNKIHSTFN-QTITATGRLSS 624 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 QN+P +++ Q+ V +SE + D Sbjct: 625 TEPNLQNIPVKFEMGKKIRQLF------------------------VPSSENHIFLDGDY 660 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA M+G+ +KAF+ D++ T ++ F+V VT QR+ K + + Y Sbjct: 661 SQIELRVLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFEDVTSMQRSNAKAVNFGIVY 720 Query: 442 QGGAKAF 448 G AF Sbjct: 721 --GISAF 725 >gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM] gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM] Length = 933 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A GK+LV D + IE R+LA +AG +AF G D++ T + F V + Sbjct: 693 IREAFVADAGKRLVSLDYSQIELRILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLDE 752 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 753 MTSDVRRRAKAINFGVIY 770 >gi|332818964|ref|XP_001147379.2| PREDICTED: DNA polymerase nu isoform 3 [Pan troglodytes] Length = 1502 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 12/159 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S H + I H P IT+ + +I++ R+ ++S+G + AD + IE Sbjct: 1173 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 1231 Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 R+LA ++G+ LK F+ E D++ T ++ +V QVT R K + A+ Y G Sbjct: 1232 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 1291 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +++A+ G+ + A ++ S ++++ ++F R Sbjct: 1292 K---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 1325 >gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228] Length = 880 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 PP ++ H +Q++T +++P+ LQ I +R I S ++ Sbjct: 587 LPPLINDETAKIHTSFNQMVTATGRLSSTEPN-LQNIPIRTEEGREIRKAFIPSRSDMIL 645 Query: 378 VA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 +A D + IE RV A ++G+Q +AF D++ T A F V VT D R KV+ Sbjct: 646 LAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTETAAEVFEVKAEAVTPDLRRHAKVIN 705 Query: 437 LALGYQGGA 445 + Y A Sbjct: 706 FGIAYGMSA 714 >gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 867 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I+S +G +V AD + IE RVLA ++ + +++F ED+++ T + F +AP Sbjct: 627 IRKAFISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPE 686 Query: 423 QVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 687 EVTGEMRRRAKAVNFGIVY 705 >gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] Length = 912 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 25/151 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L+ ++ GR+ T Q A+ TGR S QN+P + + Q Sbjct: 624 IDGLIPMVDDGGRIHTTFQQTIAA-TGRLSSIDPNLQNIPIRTAEGRRIRQ--------- 673 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + V+ S + L+ AD + IE R++A ++G+ ++AF +GEDL+ Sbjct: 674 ---------------AFVVGSGHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHS 718 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R++++ V + R K M L Y Sbjct: 719 FVASRAYDIPIEDVDPEMRRRIKAMSYGLAY 749 >gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14] gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14] Length = 920 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 328 NLP-----RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKL 376 NLP R H +Q +T +SDP+ LQ I +R C I G Sbjct: 635 NLPTLINKRTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRTDDGKEIRKCFIPEPGCLF 693 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + IE R++A ++G++ ++AF G D++ T A+ ++ +VT QR K Sbjct: 694 FSADYSQIELRIMAHLSGDENMIEAFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQAN 753 Query: 437 LALGY 441 + Y Sbjct: 754 FGIIY 758 >gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148] Length = 640 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 42/189 (22%) Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP-QNLP 330 + IQ++ R + + + ++ E M+ G +R + LGA +GR S C+ P Q +P Sbjct: 342 EVIQIYLEWKRCEKRRQM-IESIQEKMDGTGFVRASYMQLGAE-SGRMS-CIKPNNQQIP 398 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R + RSCV A EG LV AD +E R+ A Sbjct: 399 RDKQ-----------------------------FRSCVEAPEGWLLVDADFGQMELRLAA 429 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A ++ + AF+ GED + T A+ R K L Y GA + Sbjct: 430 AVADDERMIAAFQAGEDPHTVT---------AKAIGCDRQTAKSANFGLLYGSGATGLRN 480 Query: 451 MASTTGLNL 459 A G+ + Sbjct: 481 YAGGMGITM 489 >gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] Length = 932 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 6/138 (4%) Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 VR IA + L+ AD + IE R++A ++ E + +F ED++ +T A+ F+V Sbjct: 692 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLE 751 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT++QR+ K + + Y G AF +++ T L+ + L+ T A + + N+ Sbjct: 752 EVTREQRSHAKTVNFGIIY--GVSAF-GLSAQTNLSRSESKELIDTYYA--TYPNLRNYI 806 Query: 483 RWMQENHPEHAIEDLFIG 500 + EH + +G Sbjct: 807 SKQIQFAQEHGYVETVLG 824 >gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] Length = 920 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R H +Q +T +SDP+ LQ I +R C + G AD + I Sbjct: 643 RTQHIHTSFNQALTATGRLSSSDPN-LQNIPVRSEDGKEIRKCFVPEPGCLFFSADYSQI 701 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++G++ ++AF G D++ T A+ ++ A VT ++R K + Y Sbjct: 702 ELRIMAHLSGDENMIEAFREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIY 758 >gi|313631118|gb|EFR98659.1| DNA polymerase [Listeria seeligeri FSL N1-067] Length = 56 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 29/48 (60%) Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 G+ Y T + ++YTYGGKL ENIVQA++RD LA + AG Sbjct: 6 GHQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAVSLRRIEDAG 53 >gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149] gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149] Length = 933 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 27/151 (17%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + +N D GR+ + GAS TGR + QN+P RS E Sbjct: 646 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 689 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R +A EGK LV D + IE R+LA +A AF+ G+D++ Sbjct: 690 ----------GRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKAAFDDGQDIHA 739 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F+V ++T + R K + + Y Sbjct: 740 MTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770 >gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] Length = 871 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R + EG V AD + IE R Sbjct: 596 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPKEGCVFVDADYSQIELR 655 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA +G++ ++A+ D++ T ++ F+V +VT QR K + + Y Sbjct: 656 ILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVY 709 >gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus] gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus] Length = 943 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 25/164 (15%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 N L+ +N++ T + TGR S QN+P +R+H+ Sbjct: 657 NKLISMVNTESNRIHTSYNQTRTATGRLSSANPNLQNIP--NRNHD-------------- 700 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R IA +V AD + IE R++A ++ + + F +G+D++ T Sbjct: 701 ---------GRKIRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFLSGKDIHTT 751 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 T + F + VT +QR K + L Y A K S T Sbjct: 752 TASEIFVTSLNLVTNEQRHQAKTINFGLIYGMSAFGLSKQLSVT 795 >gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] Length = 932 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 6/138 (4%) Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 VR IA + L+ AD + IE R++A ++ E + +F ED++ +T A+ F+V Sbjct: 692 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLE 751 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT++QR+ K + + Y G AF +++ T L+ + L+ T A + + N+ Sbjct: 752 EVTREQRSHAKTVNFGIIY--GVSAF-GLSAQTNLSRSESKELIDTYYA--TYPNLRNYI 806 Query: 483 RWMQENHPEHAIEDLFIG 500 + EH + +G Sbjct: 807 SKQIQFAQEHGYVETVLG 824 >gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74] gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74] Length = 1024 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 373 GKKLVV--ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G + V+ AD + IE R++A +G+Q L+AF G D++ T ++ F+V +VT D R Sbjct: 792 GPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIHTQTASKVFHVGLDEVTSDMRR 851 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 852 KAKTINFGIIY 862 >gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR] gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR] Length = 886 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASE-GKKLVVADLA 382 P + H +Q +T +++P+ LQ I +R + SE G ++ AD + Sbjct: 603 PVTGKVHTTFNQTVTATGRLSSTEPN-LQNIPIRMEEGRRIRKAFVPSEPGWIILSADYS 661 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++G++ ++AF ED++ T A F V+ +VT + R+ K + + Y Sbjct: 662 QIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAVNFGIVY 720 >gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a] Length = 552 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA E LV AD + E R+ A MAG++ + F D++ T + + + Q Sbjct: 471 IRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQ 530 Query: 424 VTKDQRAIGKVMELALGY 441 VT +QR KV+ + Y Sbjct: 531 VTSNQRRNAKVINFGVLY 548 >gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae bacterium] Length = 894 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q + +S+P+ I + +R +A L+ AD + +E RV Sbjct: 620 RVHTSFNQTVAATGRLSSSNPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADYSQVELRV 679 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ ++ + AF+ GED++ T F P ++ + R + K + + Y G AF Sbjct: 680 LAHLSEDEALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNFGIVY--GLSAF 737 >gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] Length = 867 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 32/166 (19%) Query: 288 VLKLN-TLVEAM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + K+N T VE + + DGR+ + TGR S QN+P E+ ++ Sbjct: 572 ITKINSTYVEGLKNVVDEDGRIHSNFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKV 630 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +P T D + SC D + IE RVLA +AG++ + AF Sbjct: 631 F--IPMEET----------DILVSC------------DYSQIELRVLAHIAGDENMIDAF 666 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 E D++ T + F V +VT R+ K + + Y G AF Sbjct: 667 EHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIVY--GISAF 710 >gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] Length = 873 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIEA 386 R H +Q++T +SDP+ LQ I +R+ G LV AD + IE Sbjct: 598 RIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIEL 656 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Y Sbjct: 657 RILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIY 711 >gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr] gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr] Length = 908 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 42/79 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D+++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHIETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544] gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544] Length = 878 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIE 385 R H +Q +T +SDP+ LQ I +R+ EG L+ AD + IE Sbjct: 602 GRVHTSFNQTVTATGRLSSSDPN-LQNIPVRTEEGRMIRALFEPGEGYDYLLSADYSQIE 660 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R+LA M+G++ + F+ G+D++ T A F + +VT + R K + + Y Sbjct: 661 LRLLAHMSGDENFIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNFGIVY 716 >gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] Length = 635 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 43/77 (55%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R+ + ++ +V AD + IE RVLA ++ ++ ++AF ED+++ T + F V P V Sbjct: 397 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 456 Query: 425 TKDQRAIGKVMELALGY 441 T + R KV+ + Y Sbjct: 457 TPEMRRAAKVVNFGIIY 473 >gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040] gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040] Length = 935 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG L+ D + IE R+LA +AG +AF G D++ T + F+V + Sbjct: 695 IREAFVADEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEE 754 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 755 MTPDIRRKAKAINFGVIY 772 >gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44] gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44] Length = 877 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIEA 386 R H +Q++T +SDP+ LQ I +R+ G LV AD + IE Sbjct: 602 RIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Y Sbjct: 661 RILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIY 715 >gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002] gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002] Length = 850 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q T +SDP+ LQ I +R + G L+ AD + Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ ++ + AF+ D++ T A F V A VT + R+ K + + Y Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVY 688 >gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307] gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307] Length = 986 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 12/132 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I S +R + + L+ AD + IE Sbjct: 695 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTAYSRQIRKAFLPQKDWTLLSADYSQIEL 753 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L + GE+ ++A+ +G+D++ T AR + ++V+ ++R +GK + + Y GA Sbjct: 754 RILTHLCGEEALVEAYNSGDDVHALT-ARLL-LDKSEVSDEERRLGKTINFGVIYGMGA- 810 Query: 447 AFQKMASTTGLN 458 Q+ A TG++ Sbjct: 811 --QRFARATGVS 820 >gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q T +SDP+ LQ I +R + G L+ AD + Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ ++ + AF+ D++ T A F V A VT + R+ K + + Y Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVY 688 >gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] Length = 936 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (52%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG L+ D + IE R+LA MAG + +AF G+D++ T + F V + Sbjct: 696 IREAFVAEEGNVLLSLDYSQIELRILAHMAGIETLQQAFAEGQDIHALTASEMFGVPLEE 755 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 756 MTPEIRRQAKAINFGVIY 773 >gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 311 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 17/168 (10%) Query: 328 NLPR------PSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLV 377 +LPR PS S Q I+ P IT+ + +I++ R+ ++S+G + Sbjct: 92 SLPRTGLQKYPSTSEAVNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFL 151 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 AD + IE R+LA ++G+ LK F+ E D++ T ++ +V QVT R K + Sbjct: 152 AADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKV 211 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 A+ Y G +++A+ G+ + A ++ S ++++ ++F R Sbjct: 212 VYAVVYGAGK---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 254 >gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] Length = 887 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382 P + + +Q +T +SDP+ LQ I + R V +S LV AD + Sbjct: 608 PETEKIYSHFNQTVTATGRISSSDPN-LQNIPVRTDLGREIRRVFVPSSPMCVLVDADYS 666 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA + ++ L+AF +D++ T + F V VT++QR+ K + L Y Sbjct: 667 QIELRVLAHLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIY- 725 Query: 443 GGAKAF 448 G +AF Sbjct: 726 -GKQAF 730 >gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] Length = 896 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 27/152 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +++L+ + +D R+ T + A+ TGR + QN+P +RS Sbjct: 608 VDSLIATVGADERIHTTFSQVAAA-TGRLASSDPNLQNIP--ARS--------------- 649 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 PD ++I R G L+ AD + IE R++A ++G++ ++AF +GEDL+ Sbjct: 650 ---PDGMRI-----RGAFTPGPGYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLH 701 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F QV+ ++R+ K L Y Sbjct: 702 RTMASMVFGTPVEQVSGEERSRIKATSYGLAY 733 >gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium glutamicum ATCC 13032] Length = 905 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L+ + DGR+ T AS TGR S QN+P + + + Sbjct: 617 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 663 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 664 -------------IRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 710 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ FNV VT + R K M L Y G AF Sbjct: 711 NYVGSKVFNVPIDGVTPELRRQVKAMSYGLVY--GLSAF 747 >gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 866 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382 PR R H +Q +T +S+P+ LQ I +R+ S+G L+ AD + Sbjct: 587 PRTKRIHTSFNQTVTATGRLSSSEPN-LQNIPVRTEEGRQIRALFEPSDGYDALMSADYS 645 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ ++ L+AF G+D++ T + F V VT D R K + + Y Sbjct: 646 QIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVY 704 >gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q T +SDP+ LQ I +R + G L+ AD + Sbjct: 572 PSSGRVHTTFIQTGTATGRLASSDPN-LQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ ++ + AF+ D++ T A F V A VT + R+ K + + Y Sbjct: 631 IELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVY 688 >gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 867 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLA 382 PR R H +Q +T +S+P+ LQ I +R+ S+G L+ AD + Sbjct: 588 PRTKRIHTSFNQTVTATGRLSSSEPN-LQNIPVRTEEGRQIRALFEPSDGYDALMSADYS 646 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ ++ L+AF G+D++ T + F V VT D R K + + Y Sbjct: 647 QIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVY 705 >gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] Length = 833 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%) Query: 336 HEELDQIITHLPTSITSDPDPLQIIS------DCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q T +SDP+ LQ IS +R +ASEG L+ D + IE RVL Sbjct: 566 HTSFNQHATQTGRLSSSDPN-LQNISVRDEETRMIRKAFVASEGCTLMSIDYSQIELRVL 624 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +++A E+ ++AF G D++ T F V VT R K + + Y Sbjct: 625 SYLADEKRMMEAFNGGHDIHSETAKAIFGV--DDVTSTMRRQAKSVNFGIVY 674 >gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 875 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 +T + R K + + Y G AF Sbjct: 698 LTSEHRRKAKAINFGIIY--GISAF 720 >gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27] gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27] Length = 877 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAGIEA 386 R H +Q++T +SDP+ LQ I +R+ G LV AD + IE Sbjct: 602 RIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGTGYDTLVSADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R+LA ++G++ +KAF G+D++ T A + +VT ++R+ K + + Y Sbjct: 661 RILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIY 715 >gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] Length = 855 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 44/92 (47%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G V D + IE R++A ++ E + AF+ GED++ T A F V + Sbjct: 616 IRRAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDE 675 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 V R+ K + + Y + + AS T Sbjct: 676 VDDLLRSRAKAVNFGIIYGISSFGLSETASIT 707 >gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1] gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1] Length = 968 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 10/141 (7%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P LP+ R H IT +S+P+ LQ I +R+ +A + L+ Sbjct: 680 LPSYILPKTGRVHTNYSLAITSTGRLSSSEPN-LQNIPVRTAEGRKIRTAFVAPKRHVLL 738 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA +A +AF G+D++ T ++ F VA + D R K + Sbjct: 739 SADYSQIELRILAHIANITALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINF 798 Query: 438 ALGYQGGAKAFQKMASTTGLN 458 + Y G AF +A+ GL+ Sbjct: 799 GIIY--GISAF-GLANQLGLS 816 >gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114] gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114] Length = 933 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 27/151 (17%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + +N D GR+ + GAS TGR + QN+P RS E Sbjct: 646 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 689 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R +A EGK LV D + IE R+LA +A AF+ G+D++ Sbjct: 690 ----------GRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKTAFDDGQDIHA 739 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F+V ++T + R K + + Y Sbjct: 740 MTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770 >gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] Length = 939 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 34/217 (15%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNT 293 ++L+ LF E G+ T+T + L Q F + R A + ++ Sbjct: 594 KQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHRDATRLKVTVDG 653 Query: 294 LVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L++++ +DGR+ T Q + A TGR S QN+P + + Sbjct: 654 LLKSIAADGRIHTTYSQTIAA--TGRLSSTEPNLQNVPIRTAAGRR-------------- 697 Query: 353 DPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R+ + +G +L+ AD + IE R++A ++ + ++AF + D + Sbjct: 698 -----------IRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRDFHSE 746 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 T ++ F V A V+ +QRA K M L Y G AF Sbjct: 747 TASKVFGVDAADVSPEQRAKIKAMNYGLAY--GLSAF 781 >gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479] gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479] Length = 598 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q IT +++P+ P+++ + +R + +G + AD + IE RV Sbjct: 324 RIHGTFNQTITATGRISSTEPNLQNIPVRMELGREIRKIFVPEDGYVFIDADYSQIELRV 383 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 LA M+G++ + A+ ED++ T + F+ +VT QR K + + Y Sbjct: 384 LAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKAVNFGIVY 436 >gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122] gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122] Length = 905 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 9/130 (6%) Query: 336 HEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVL 389 H +Q +T +SDP+ I +R C + G + AD + IE R+L Sbjct: 632 HTHFNQTVTTTGRLSSSDPNLQNIPVRTEFGRRIRGCFVPLRTGDLFMSADYSQIELRLL 691 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ ++ + AF +G D + +T AR F V +VT R+ K + + Y G +AF Sbjct: 692 AHLSRDEHLVHAFCSGADFHASTAARVFGVPLEEVTPSMRSRAKAVNFGIVY--GQQAF- 748 Query: 450 KMASTTGLNL 459 +A G+ Sbjct: 749 GLAQNLGIGF 758 >gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] Length = 877 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 86/281 (30%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + S+ L+ +D + IE RVLA ++ ++ + AF+ G D++ +T R F + A+ Sbjct: 637 IRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGIEKAE 696 Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R K + + Y G F +A G+ +DA+N+ Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E +P I T E + + R K F +T ++ + Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ R R+ +N+ + Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637 Q + DIL M+N KA + ++L VHDEI+ + P Sbjct: 798 QGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVP 838 >gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5] gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5] Length = 871 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R + EG + AD + IE R Sbjct: 596 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPKEGYVFIDADYSQIELR 655 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA +G++ ++A++ D++ T ++ F+ +VT+ QR K + + Y Sbjct: 656 ILAHCSGDEQLIQAYKDARDIHRMTASQVFHTPFEEVTELQRRNAKAVNFGIVY 709 >gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000] Length = 877 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 86/281 (30%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + S+ L+ +D + IE RVLA ++ ++ + AF+ G D++ +T R F + A+ Sbjct: 637 IRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAE 696 Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R K + + Y G F +A G+ +DA+N+ Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E +P I T E + + R K F +T ++ + Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ R R+ +N+ + Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637 Q + DIL M+N KA + ++L VHDEI+ + P Sbjct: 798 QGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVP 838 >gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B] Length = 862 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 32/158 (20%) Query: 290 KLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 KLN+ L+ ++ DGR+ + + TGR S QN+P Sbjct: 569 KLNSTYVEGLIHVIDQDGRIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYE---------- 617 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFE 403 + +R + ++ + L++ AD + IE RVLA MA ++ A+ Sbjct: 618 ---------------MGRAIRKVFVPNDEESLILSADYSQIELRVLAHMADDENMKTAYL 662 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 D++ T + FN+ QVTK++R+ K + + Y Sbjct: 663 EHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVY 700 >gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis] Length = 871 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 43/77 (55%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R+ + ++ +V AD + IE RVLA ++ ++ ++AF ED+++ T + F V P V Sbjct: 633 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 692 Query: 425 TKDQRAIGKVMELALGY 441 T + R KV+ + Y Sbjct: 693 TPEMRRAAKVVNFGIIY 709 >gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 849 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 27/149 (18%) Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L++A+NS GR+ G + TGR + QN+P + Sbjct: 565 LMQAINSVTGRVHSNFIQTGTA-TGRLASAESNLQNIP-------------------VKY 604 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 D L +R I EG L+ AD + IE R+LA ++ ++ + AF+ D++ T Sbjct: 605 DEGRL------IRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQT 658 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 A F V +QVT R+ K + + Y Sbjct: 659 AAEIFGVDVSQVTPTMRSQAKAVNFGIIY 687 >gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313] Length = 894 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAG 383 P + H +Q +T +++P+ P+++ + +R I S+ L++ AD + Sbjct: 615 PYTGKIHSSFNQTVTATGRISSTEPNLQNIPIKLEMGRKIRKVFIPSDENYLLLDADYSQ 674 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RVLA + ++ + AF ED++ +T A F + +VT R+ K + + Y Sbjct: 675 IELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGI 734 Query: 444 GAKAFQK 450 G + K Sbjct: 735 GDFSLAK 741 >gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73] gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73] Length = 968 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IASEG L+ AD + IE R+LA A +AF G+D++ T ++ F VA Sbjct: 725 IRAAFIASEGHILLSADYSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEG 784 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + D R K + + Y G +F +A+ G++ Sbjct: 785 MPSDIRQRAKAINFGIIY--GISSF-GLANQLGIS 816 >gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] Length = 995 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 73/310 (23%), Positives = 122/310 (39%), Gaps = 48/310 (15%) Query: 159 EYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 EY D VT ++ L+P + E+ L + + G VD + L+ Sbjct: 552 EYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLS 611 Query: 209 QIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRV 262 +L++E+ L + L S + E L L L G + T Sbjct: 612 HAFAQRTVRLEEEINGLVGHKFNLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLDD 671 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLK---LNTLVEAMNSD-GRLRGTLQFLGASRTGR 318 L++N+++ A ++ N + + LK + L +N++ GR+ T LGA+ TGR Sbjct: 672 LAANEEIDGDARRLINTMLEWRQMTKLKSTYTDALPAYINAETGRIH-TSYALGATTTGR 730 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 + QN+P ++ E +R+ IA +G +L+ Sbjct: 731 LASSDPNLQNIPIRTKEGRE-------------------------IRTAFIADKGMQLIS 765 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA +A KAF G D++ T + F V + + R K + Sbjct: 766 ADYSQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFG 825 Query: 439 LGYQGGAKAF 448 + Y G AF Sbjct: 826 IIY--GISAF 833 >gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] Length = 881 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P Sbjct: 642 KAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPED 701 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 702 VTPNDRRNAKAVNFGVVY 719 >gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] Length = 873 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 8/118 (6%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEG-KKLVVADLAG 383 + R H +Q++T +SDP+ LQ I +R+ G LV AD + Sbjct: 595 KTKRIHTTFNQMVTATGRLSSSDPN-LQNIPVRTEKGREIRALFYPGAGYDTLVSADYSQ 653 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++G++ +KAF G+D++ T A + VT ++R+ K + + Y Sbjct: 654 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQEDVTSEERSHAKAINFGIIY 711 >gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] Length = 867 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 71/299 (23%), Positives = 114/299 (38%), Gaps = 51/299 (17%) Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +D+ + +++ D KL ++ ++ G + ++L LF + GL T Sbjct: 486 GTEIDLDVLKEMDEAFDETIEKLSNDIYRIS-GTTFNISSPKQLGQVLFEDLGLKGGKKT 544 Query: 256 ET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 +T T Q VL P V RM S+ L L E + D ++ T+ Sbjct: 545 KTGYSTSQDVLEKIIDAHPVVPLVLEYRMLTKLSSTY-LKGLQEQVFPDNKIH-TIYKQT 602 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P RS E +R ++ Sbjct: 603 LTHTGRLSSVDPNLQNIP--VRSEE-----------------------GKLIRKAFVSHN 637 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G LV D + IE R+LA MA + AF G+D++ T A F V +VT R+ Sbjct: 638 GY-LVSFDYSQIELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQA 696 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y G F +++ G+++ +A NF E +PE Sbjct: 697 KAVNFGIIY--GMSEF-RLSKDIGMSI----------------AEARNFINKYFETYPE 736 >gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] Length = 878 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q IT +++P+ P+++ + +R + EG + AD + IE R Sbjct: 603 GRIHSTFHQTITATGRISSTEPNLQNIPIRMELGRLIRKVFVPREGCIFLDADYSQIELR 662 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA M+G++ ++A+ +D++ T ++ F+ +VT QR K + + Y Sbjct: 663 VLAHMSGDEKLIQAYREAQDIHRLTASQVFHTPFEEVTDLQRRNAKAVNFGIVY 716 >gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy] gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy] Length = 948 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 41/85 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +RS + G + AD + IE VLA MA + AF G D++ +T + F+V Q Sbjct: 709 IRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAFAAGIDVHSSTASLIFDVPLDQ 768 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VT QR I K + + Y G + Sbjct: 769 VTPVQRRIAKTINFGVMYGMGTHSL 793 >gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4] gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Thermoanaerobacter tengcongensis MB4] Length = 871 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 43/77 (55%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R+ + ++ +V AD + IE RVLA ++ ++ ++AF ED+++ T + F V P V Sbjct: 633 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 692 Query: 425 TKDQRAIGKVMELALGY 441 T + R KV+ + Y Sbjct: 693 TPEMRRAAKVVNFGIIY 709 >gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032] Length = 880 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L+ + DGR+ T AS TGR S QN+P + + + Sbjct: 592 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 638 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 639 -------------IRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 685 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ FNV VT + R K M L Y G AF Sbjct: 686 NYVGSKVFNVPIDGVTPELRRQVKAMSYGLVY--GLSAF 722 >gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363] Length = 877 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 86/281 (30%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + S+ L+ +D + IE RVLA ++ ++ + AF+ G D++ +T R F + A+ Sbjct: 637 IRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAE 696 Query: 424 -VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT + R K + + Y G F +A G+ +DA+N+ Sbjct: 697 DVTANDRRNAKAVNFGVVY--GISDF-GLARNLGIT----------------RKDAKNYI 737 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E +P I T E + + R K F +T ++ + Sbjct: 738 ETYFERYPG-------IKTYMENIVREARDK-------------GFVET-------MSHR 770 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + R+ R R+ +N+ + Sbjct: 771 RRKIPDI--------------NARNFNVRGFA-ERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637 Q + DIL M+N KA + ++L VHDEI+ + P Sbjct: 798 QGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVP 838 >gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 906 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A + ++ AD + IE R++A ++ ++ L AF +D++ T + FN+ + Sbjct: 670 IRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHDKDVHSVTASTMFNMPINE 729 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 VTK R K + L Y G AF Sbjct: 730 VTKKHRRRSKAINFGLIY--GMSAF 752 >gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247] gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247] Length = 949 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 18/174 (10%) Query: 289 LKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------ 341 + ++ L++++ DGR+ T Q + A TGR S QN+P + + E+ Q Sbjct: 622 VTVDGLLKSVADDGRIHTTFNQTIAA--TGRLSSTEPNLQNIPVRTAAGREIRQGFIVGA 679 Query: 342 ------IITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 S S PD + S +G L+ AD + IE R++A ++ Sbjct: 680 GSGASGDGGVGAGSGASGPDGVGAGSGSSGHDGGTGDGFDCLMTADYSQIEMRIMAHLSE 739 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + ++AF TGEDL+ +R+F V +VT + R K M L Y G AF Sbjct: 740 DAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTTEMRHRVKAMSYGLAY--GLSAF 791 >gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Saccharomonospora viridis DSM 43017] gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Saccharomonospora viridis DSM 43017] Length = 559 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 I +R CV A G LVVAD A +E RVLA ++G++ +L DLY + F Sbjct: 317 IPKLLRGCVRADPGWTLVVADAAQLEPRVLAALSGDR-RLAEVSADADLYTSLTHTLFGR 375 Query: 420 APAQVTKDQRAIGKVMELALGYQG 443 P +D RA K+ L+ Y G Sbjct: 376 TP---IEDDRARAKIAMLSAMYGG 396 >gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] Length = 887 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-Q 423 ++ V A EG ++ +D + IE RVLA + G+Q +AF+ GED++ TT + F + A + Sbjct: 648 QAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDIHATTAVKIFGLKDASE 707 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 708 VTPNIRRQAKAVNFGIVY 725 >gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] Length = 930 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIIS--DCVRSCVIASEGKKLVVADLAGIEAR 387 + H +Q IT ++DP+ P+++ + VI + + + AD + IE R Sbjct: 647 KIHTTYNQTITATGRLSSTDPNLQNIPIKLEEGRKIRKGFVIQNSDQLFLAADYSQIELR 706 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA ++ + ++AF+ +D++ T A+ F V QVT++ R+ K + + Y Sbjct: 707 ILAHVSEDTNLIQAFQEQQDIHTQTAAQVFEVESTQVTREMRSHAKAVNFGIVY 760 >gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1] gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1] Length = 925 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G +V D + +E R+LA + + + + +G DL+ + +F VA +V+KDQR Sbjct: 627 GDGGVIVQFDYSQLELRILAVITQDPTLIDLYRSGADLHKAVASDAFGVAIEEVSKDQRT 686 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLN 460 K ++ + YQ A+ + G+ ++ Sbjct: 687 ASKKIQFGIVYQESARGLSEDLRAEGITMS 716 >gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R] gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R] Length = 880 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L+ + DGR+ T AS TGR S QN+P + + + Sbjct: 592 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 638 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS + EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 639 -------------IRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 685 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ FNV VT + R K M L Y G AF Sbjct: 686 NYVGSKVFNVPIDGVTPELRRQVKAMSYGLVY--GLSAF 722 >gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513] gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513] Length = 872 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 +R H Q++T +++P+ LQ I R+ + ++ +V AD + IE Sbjct: 596 NRVHSNFKQMVTSTGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 654 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ +++F ED+++ T + F V +VT + R + K + + Y Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRVAKAVNFGIIY 710 >gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes] Length = 900 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 12/159 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S H + I H P IT+ + +I++ R+ ++S+G + AD + IE Sbjct: 571 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 629 Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 R+LA ++G+ LK F+ E D++ T ++ +V QVT R K + A+ Y G Sbjct: 630 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 689 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +++A+ G+ + A ++ S ++++ ++F R Sbjct: 690 K---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 723 >gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402] Length = 944 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A +G+ L+ AD + IE +LA ++ +Q ++AF G D++ T + F V Sbjct: 705 IREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNKGIDVHAKTASLIFAVDIKD 764 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 V++D R I K + + Y G AF+ +S Sbjct: 765 VSQDMRRIAKTINFGVMY--GMSAFRLASS 792 >gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23] gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23] Length = 888 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423 ++ V + EG ++ +D + +E RVLA + G++ + F+ GED++ +T R F++AP A+ Sbjct: 648 KAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAE 707 Query: 424 VTKDQRAIGKVMELALGY 441 + ++ R K + + Y Sbjct: 708 IDRNMRRRAKAVNFGIVY 725 >gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] Length = 888 Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423 ++ V + EG ++ +D + +E RVLA + G++ + F+ GED++ +T R F++AP A+ Sbjct: 648 KAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAE 707 Query: 424 VTKDQRAIGKVMELALGY 441 + ++ R K + + Y Sbjct: 708 IDRNMRRRAKAVNFGIVY 725 >gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] Length = 740 Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q IT +++P+ P++ + +R + E AD + IE R+ Sbjct: 466 RIHTSFNQTITATGRISSTEPNLQNIPMRTELGRLIRKVFVPKEDHVFADADYSQIELRI 525 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 LA M+ +Q + A+ G+D++ T ++ F+V +VT QR K + + Y Sbjct: 526 LAHMSEDQELIAAYHEGKDIHGITASKVFHVPFEEVTPLQRRNAKAVNFGIVY 578 >gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] Length = 888 Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423 ++ V + EG ++ +D + +E RVLA + G++ + F+ GED++ +T R F++AP A+ Sbjct: 648 KAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAE 707 Query: 424 VTKDQRAIGKVMELALGY 441 + ++ R K + + Y Sbjct: 708 IDRNMRRRAKAVNFGIVY 725 >gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 656 Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 40/226 (17%) Query: 218 LDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT------ 270 L E+ LT G+ + ++ K +L+ + GL + TE + + +L Sbjct: 252 LKAEINELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTEKNQEAADDAAMQLLEEYCAQ 311 Query: 271 --PQAIQVFNNRMRASRSAVLK---LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVF 324 P+ +++F + LK ++ ++ +NS GR+ L LG + TGRW+ Sbjct: 312 HRPELVRLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIHPDLMPLG-TDTGRWAARNP 370 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 QN PR + DP+ I R+ ++A G+ ++ D + I Sbjct: 371 NMQNAPRKTN--------------------DPIGI-----RNFIVAPPGQIIMSLDFSQI 405 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 E RV A+ + L+ + +G D++ T + F V P +V D+ A Sbjct: 406 ELRVGAFYCRDPKMLETYRSGGDIHAQTTSVVFGV-PFEVAVDKNA 450 >gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803] gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803] Length = 996 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 28/165 (16%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I S +R + E L+ AD + IE Sbjct: 705 GRVHTDFNQAVTATGRLSSSNPN-LQNIPVRTEYSRRIRKAFLPQEHWTLLSADYSQIEL 763 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ G+D++ T AR + V+ D+R +GK + + Y GA Sbjct: 764 RILTHLSGEEVLQQAYRDGDDVHALT-ARLL-LEKDDVSADERRLGKTINFGVIYGMGA- 820 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 Q+ A TG++ DA+ F +E +P+ Sbjct: 821 --QRFARETGVS----------------QTDAKEFLSKYRERYPK 847 >gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001] gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001] Length = 965 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H IT ++DP+ LQ I +R IA GKKL+ AD + I Sbjct: 687 RDDRVHTSFQMAITSTGRLSSTDPN-LQNIPVRTEEGTRIRQAFIAPSGKKLISADYSQI 745 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 E R+LA +A +AF+ G+D++ T + FN+ Sbjct: 746 ELRLLADVANIPALREAFQLGQDIHARTASEVFNI 780 >gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] Length = 607 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A GK LV D + IE R+LA +A +AF+ G D++ T + FNV Q Sbjct: 367 IRGAFVAPAGKVLVSLDYSQIELRILAQIAQIDALKEAFQQGLDIHAATASEMFNVPLDQ 426 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 +T + R K + + Y G AF Sbjct: 427 MTPEIRRQAKAINFGVIY--GISAF 449 >gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] Length = 586 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 2/131 (1%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R R + E QI + P+ LQ I ++ EG K +VAD + IE R+ A Sbjct: 319 RNKRVYGEFKQIGAATGRMSSLRPN-LQNIPKNLKYLFKPKEGYKFIVADYSQIELRIAA 377 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + AF G+DL+ T + + ++TK++R + K + L Y K+ + Sbjct: 378 QYTKDENMITAFNEGKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLIE 437 Query: 451 MA-STTGLNLN 460 A + G+++N Sbjct: 438 YAKANYGVSIN 448 >gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771] Length = 564 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 319 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 378 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 379 MPGEVRRRAKAI 390 >gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] Length = 997 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 752 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 811 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 812 MPGEVRRRAKAI 823 >gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389] gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389] Length = 871 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A +G KL+ AD + IE R+L+ +A + +AF +D++ T + FN+ + Sbjct: 634 IRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIFNLQKEE 693 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 +T + R K + + Y G AF Sbjct: 694 LTSEHRRKAKAINFGIIY--GISAF 716 >gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CNPAF512] Length = 997 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 752 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 811 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 812 MPGEVRRRAKAI 823 >gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99] Length = 875 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 ++ AD + IE RVLA + G+ +AF ED++ TT + FNVA +VT R K + Sbjct: 648 ILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAV 707 Query: 436 ELALGY 441 + Y Sbjct: 708 NFGIVY 713 >gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785] gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785] Length = 886 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 38/247 (15%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A LNQ+ + KL QELE Y L ++L LF + GL T+T Sbjct: 507 ASVLNQLGNDFAVKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 565 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + L+E + DGR+ LQ L A T Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLECIQPDGRIHTRYLQTLTA--T 622 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P +R++E +R + S Sbjct: 623 GRLSSVDPNLQNIP--TRTNE-----------------------GKQIRKAFVPSTKDGY 657 Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 + + D + +E RVLA ++G++ +AF++G D++ T + F++ +P +VT R K Sbjct: 658 IFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKA 717 Query: 435 MELALGY 441 + + Y Sbjct: 718 VNFGIVY 724 >gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] Length = 908 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++V T ++ F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHVETASKLFKTEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] Length = 1016 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 771 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 831 MPGEVRRRAKAI 842 >gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] Length = 881 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P Sbjct: 642 KAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPED 701 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 702 VTPNDRRNAKAVNFGVVY 719 >gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42] gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CFN 42] Length = 999 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 754 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 813 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 814 MPGEVRRRAKAI 825 >gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] Length = 881 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P Sbjct: 642 KAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPED 701 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 702 VTPNDRRNAKAVNFGVVY 719 >gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 886 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 38/247 (15%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A LNQ+ + KL QELE Y L ++L LF + GL T+T Sbjct: 507 ASVLNQLGNDFAVKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 565 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + L+E + DGR+ LQ L A T Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLECIQPDGRIHTRYLQTLTA--T 622 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P +R++E +R + S Sbjct: 623 GRLSSVDPNLQNIP--TRTNE-----------------------GKQIRKAFVPSTKDGY 657 Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 + + D + +E RVLA ++G++ +AF++G D++ T + F++ +P +VT R K Sbjct: 658 IFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKA 717 Query: 435 MELALGY 441 + + Y Sbjct: 718 VNFGIVY 724 >gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum] Length = 1016 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 771 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 831 MPGEVRRRAKAI 842 >gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1] gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1] Length = 905 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGKKL+ D + IE R+LA + + + AF +D+++ T F A Sbjct: 670 IREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKDIHLQTAIALFGEEEA- 728 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +RA+ K + L Y G K K++ T G+ Sbjct: 729 --PSKRAVAKTVNFGLLYGMGQK---KLSETLGI 757 >gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] Length = 880 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 30/149 (20%) Query: 301 DGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 DGR+ GT Q + A TGR S QN+P + T + + I Sbjct: 604 DGRIHGTFNQTITA--TGRISSTEPNLQNIP-----------VRTEMGSKI--------- 641 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 R + G V AD + IE RVLA ++G++ ++++ + D++ T ++ F+V Sbjct: 642 -----RDIFVPKPGYVFVDADYSQIELRVLASLSGDEKLIESYHSAADIHAATASQVFHV 696 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAF 448 +VT + R K + + Y G AF Sbjct: 697 PLEEVTPELRRNAKAVNFGVVY--GISAF 723 >gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A] gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A] Length = 955 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 12/138 (8%) Query: 328 NLP-----RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377 NLP + R H +Q +T +S P+ I +S +R I+ + LV Sbjct: 656 NLPTLVSNQTHRIHTSFNQSVTSTGRLSSSKPNLQNIPIRTELSRKIRKAFISPKKWLLV 715 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA ++ E +KA+ +D++ + F+ ++T ++R +GK + Sbjct: 716 SADYSQIELRILAHLSQEPLLVKAYCDCQDIHTLSAQLLFD--KEEITIEERNLGKTINF 773 Query: 438 ALGYQGGAKAFQKMASTT 455 + Y G++ F + A T Sbjct: 774 GVIYGMGSQRFAREAGVT 791 >gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19] gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19] Length = 921 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383 P+ + H +Q +T +++P+ I + +R I L AD + Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF++G D++ T A+ + + +VT D R K + Y Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIY 759 >gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 999 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 754 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 813 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 814 MPGEVRRRAKAI 825 >gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] Length = 921 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383 P+ + H +Q +T +++P+ I + +R I L AD + Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF++G D++ T A+ + + +VT D R K + Y Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIY 759 >gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%) Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG L+ AD + IE R+LA ++ ++ + AF+ D++ T A F V + Sbjct: 609 LIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668 Query: 423 QVTKDQRAIGKVMELALGY 441 QVT R+ K + + Y Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687 >gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] Length = 907 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG L+ AD + IE R+LA +A + +AF G D++ T A+ +A Sbjct: 670 IRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREGADIHRRTAAQVLGLAEDA 729 Query: 424 VTKDQRAIGKVMELALGY 441 +T +QR K + + Y Sbjct: 730 ITPNQRRAAKTVNFGVLY 747 >gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1] Length = 537 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 11/120 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEG------KKLVVADL 381 R H Q I ++DP+ P++ + +R + G +L+ AD Sbjct: 255 GRIHTTYSQTIAATGRLSSTDPNLQNVPIRTAAGRRIRDAFVVGTGPEGGAYAELMTADY 314 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R++A ++ ++ ++AF + D + T AR F V A V+ +QRA K M L Y Sbjct: 315 SQIEMRIMAHLSEDEALIEAFRSQHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGLAY 374 >gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix jacchus] Length = 965 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 10/144 (6%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S H + I H P IT + +I++ C R+ ++S+G + AD + IE Sbjct: 634 RLSAKHPNIQGISKH-PIQITKPKNFKGKEDEILTICPRAMFVSSKGHTFLAADFSQIEL 692 Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 R+LA ++G+ LK F+ E D++ T ++ +V VT R K + ++ Y G Sbjct: 693 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEHVTHADREQTKKVVYSVVYGAG 752 Query: 445 AKAFQKMASTTGLNLNTFAHLVKT 468 +++A+ G+ + A +++ Sbjct: 753 K---ERLAACLGVPVQEAAQFLES 773 >gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] Length = 963 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ V S +++ AD + IE R++A +G+ +AF G D++ TT ++ F V +V Sbjct: 725 KAFVPDSADFQILSADYSQIELRIMAAFSGDASMTEAFNQGRDIHATTASKVFQVPLEEV 784 Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448 T D R K++ + Y G AF Sbjct: 785 TSDMRRKSKMVNFGIIY--GISAF 806 >gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 361 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 2/112 (1%) Query: 339 LDQIITHLPTSITSDPDPLQ--IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++ + P +++S P P+ + C+R+ +G ++ AD + +E R+LA +A ++ Sbjct: 55 MTRVGAYTPLTMSSGPTPMPGPKFAVCIRNVFCPFKGGLMLAADYSQLELRLLAHLAKDR 114 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + +G D++ A+ +V VT +QR K M + Y GA+A Sbjct: 115 CLMSILNSGSDVFKQIAAKWKHVDVDSVTAEQRQQAKQMCYGMIYGIGARAL 166 >gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735] gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735] Length = 920 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R H +Q +T +SDP+ LQ I +R C + + AD + I Sbjct: 643 RTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQI 701 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++G++ ++AF G D++ T A+ ++ A VT ++R K + Y Sbjct: 702 ELRIMAHLSGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIY 758 >gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5] Length = 201 Score = 45.8 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 49 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 108 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 109 MPGEVRRRAKAI 120 >gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] Length = 885 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR +A EG L+ D + IE R+LA + ++ +KAF G+D++ T + F Q Sbjct: 652 VRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDIHYETALKLFG---EQ 708 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +R++ K + L Y G K +++ T G+++ Sbjct: 709 EAASKRSVAKSINFGLLYGMGPK---RLSETLGISM 741 >gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3] Length = 732 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 487 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 546 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 547 MPGEVRRRAKAI 558 >gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199] gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199] Length = 943 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 27/165 (16%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + LVE +N++ GR+ + +GA+ TGR S QN+P R+ E Sbjct: 653 DALVETINAETGRVHTSYSMVGAA-TGRLSSNDPNLQNIP--IRTEE------------- 696 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R+ +A G L+ D + IE R++A +AG + KAF G D++ Sbjct: 697 ----------GRKIRTAFVAEPGNVLLSVDYSQIELRLVADIAGIESLRKAFLDGIDIHA 746 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 T + F V +++T D R K + + Y + ST+ Sbjct: 747 QTASEVFGVPLSEMTPDIRRKAKAINFGIIYGISGFGLARQLSTS 791 >gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217] gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217] Length = 936 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (52%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A+ G +LV D + IE R+LA +A + +AF G D++ T + FNV Q Sbjct: 696 IREAFVAASGHRLVSLDYSQIELRILAHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQ 755 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 756 MTPEIRRQAKAINFGVIY 773 >gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] Length = 950 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++ ++ ++AF +G D + Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 758 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787 >gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] Length = 950 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++ ++ ++AF +G D + Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 758 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787 >gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 886 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 32/216 (14%) Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSA 287 ++S++ L K+ LF + L + T+T + +KL PQA V N + S+ Sbjct: 536 INSTKQLGKI---LFEKLKLPVIKKTKTGYSTAVDVLEKLAPQAPIVENILQYRQISKLQ 592 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ ++S + T ++TGR S QN+P LP Sbjct: 593 STYIKGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIP-------------VRLP 639 Query: 348 TSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +R + S EG ++ +D + +E RVLA + G+ + F+ GE Sbjct: 640 EG------------RLIRQAFVPSHEGWQIFSSDYSQVELRVLAHITGDHNLQEDFKNGE 687 Query: 407 DLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 D++ +T R F++ P Q + ++ R K + + Y Sbjct: 688 DIHASTARRIFHLKPDQEIDRNMRRRAKAVNFGIVY 723 >gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1] Length = 234 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 7/84 (8%) Query: 54 PQVLKEALENT-DVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLA--RSNGLP 106 P++++ L+ D IVAHN+ F+R L C ++P HRWI TL LA R G+ Sbjct: 74 PEIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWIDTLALAKQRFPGMH 133 Query: 107 SALKAVGEALKLSSQKMEEGKELI 130 ++L A+ + K+S + E+ LI Sbjct: 134 NSLDALCKRFKISLAEREKHGALI 157 >gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1] gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax] Length = 1860 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 6/173 (3%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAG 383 PQ++ + ++ H +Q+ T + P+ QI +R I + ++AD Sbjct: 1586 PQHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPQKDNIFIIADFRQ 1645 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE ++ A + + LKA+ DL+ T + A A V K+ R I K + L Y Sbjct: 1646 IELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAIADVNKEDRHIAKAINFGLIYGM 1705 Query: 444 GAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + A+T LN+N L NS E + + RW + A+E Sbjct: 1706 NYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHY---KGIYRWHNQIKQMRALE 1755 >gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 45.8 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + VT +Q Sbjct: 2 IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61 Query: 429 RAIGKVMELALGYQGGAKAF 448 R K + L Y G AF Sbjct: 62 RRSAKAINFGLIY--GMSAF 79 >gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302] gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302] Length = 920 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R H +Q +T +SDP+ LQ I +R C + + AD + I Sbjct: 643 RTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQI 701 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++G++ ++AF G D++ T A+ ++ A VT ++R K + Y Sbjct: 702 ELRIMAHLSGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIY 758 >gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 950 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++ ++ ++AF +G D + Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 758 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787 >gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8] Length = 955 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++ ++ ++AF +G D + Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 763 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792 >gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] Length = 950 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 605 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 664 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 665 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 708 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++ ++ ++AF +G D + Sbjct: 709 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 758 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 759 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 787 >gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68] gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68] Length = 955 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++ ++ ++AF +G D + Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 763 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792 >gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii] Length = 241 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASE-GKKLVVADLA 382 P + H Q +T + DP+ LQ I +R + + G KL +D + Sbjct: 42 PETGKIHTRYQQTLTQTGRLSSVDPN-LQNIPIRMEEGRKIRQAFVPQQAGWKLFASDYS 100 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 IE RVLA ++G++ +AF G+D++ +T R F + P VT + R K + + Y Sbjct: 101 QIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAVNFGVVY 160 >gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bifidobacterium longum DJO10A] Length = 682 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 337 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 396 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 397 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 440 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++ ++ ++AF +G D + Sbjct: 441 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 490 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 491 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 519 >gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] Length = 880 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 107/262 (40%), Gaps = 36/262 (13%) Query: 188 LDQTIND---RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L Q + D RG VDVA +N ++ +L+ E+++L G + ++L LF Sbjct: 485 LAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLA-GQAFNPNSPKQLGEILF 543 Query: 245 LETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 GL + T+T T VL K P + R A L L + + +D Sbjct: 544 ERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQLAKLQGTY-LAGLPKFIQAD 602 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 G++ T ++TGR S QN+P R E Sbjct: 603 GKIH-TRFVQTLTQTGRLSSADPNLQNIP--IRMEE-----------------------G 636 Query: 362 DCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R + SE G +L AD + IE RVLA ++G+ +AF G+D++ T R F +A Sbjct: 637 RKIRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHAATARRVFGLA 696 Query: 421 PAQ-VTKDQRAIGKVMELALGY 441 + V D R K + + Y Sbjct: 697 EDEAVNSDMRRQAKAVNFGIVY 718 >gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705] gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705] Length = 955 Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 44/209 (21%) Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQ------VFNNRMRASRSAVLK----------LNTL 294 ED+ +R S + A+Q V N R A+L+ + TL Sbjct: 610 FEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTL 669 Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++A N SD R+ T + A+ TGR S QN+P + + E Sbjct: 670 IDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE--------------- 713 Query: 354 PDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + EG + L+ D + +E R++A ++ ++ ++AF +G D + Sbjct: 714 ----------IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYV 763 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + + + Q+T DQR+ K M L Y Sbjct: 764 ASMVYKLPVDQITGDQRSHVKAMSYGLAY 792 >gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup] gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup] Length = 969 Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA +G L+ AD + IE R+LA +A + +AF G D++ T ++ F VA Sbjct: 726 IRTAFIAPKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEG 785 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + D R K + + Y G AF +A+ G++ Sbjct: 786 MHSDIRRRAKAINFGIIY--GISAF-GLANQLGIS 817 >gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] Length = 897 Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 9/133 (6%) Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKL 376 V P P R H Q+ T + DP+ LQ I +R + G Sbjct: 612 VLPGLVNPGTGRLHTWFSQVGTATGRLSSKDPN-LQNIPIKTEEGRRIREAFVPQRGWWF 670 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE +LA ++ + +AF GED++ T + F V P VT +QR I K + Sbjct: 671 LSADYSQIELVILAHLSEDPALCRAFREGEDVHRATGSLLFGVPPEAVTPEQRRIAKTIN 730 Query: 437 LALGYQGGAKAFQ 449 + Y G AF+ Sbjct: 731 FGVIY--GMSAFR 741 >gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319] gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319] Length = 920 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 7/144 (4%) Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 +R L + G + P R H +Q +T +SDP+ LQ I Sbjct: 616 VRNILNYRGMKKLLSTYVEALPKLINSRTGHIHTSFNQALTATGRLSSSDPN-LQNIPVR 674 Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R C I EG AD + IE R++A ++ + ++AF G D++ T A+ + Sbjct: 675 TDDGKEIRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDNMMEAFREGYDIHRATAAKIW 734 Query: 418 NVAPAQVTKDQRAIGKVMELALGY 441 + A VT QR K + Y Sbjct: 735 HEALDDVTDAQRKKAKQANFGIIY 758 >gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 957 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 19/184 (10%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ +A+EG +++ AD + +E R+LA +A +AF G D++ T + F V Sbjct: 714 IRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFAEGVDIHAATASDMFGVPVGA 773 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV-----KTNSAPEEWEDA 478 V + R K + + Y G AF +A G+ A + + + E Sbjct: 774 VPGELRRRAKTINFGIVY--GISAF-GLADRLGIGRQEAAEFIARYFERFPGIRDYVEGT 830 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + FCR EH F+ T RV VSE QA I+ A Sbjct: 831 KTFCR-------EHG----FVRTLFGRVCHYPGITSGNVSERMGVERQAVNAPIQGTAAD 879 Query: 539 IARK 542 I R+ Sbjct: 880 IIRR 883 >gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli] gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli] gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli] gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli] gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli] gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli] gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli] gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli] gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli] gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli] gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli] gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli] gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli] gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli] gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli] gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli] gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli] gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli] gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli] gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli] gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli] gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli] gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli] gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli] gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli] gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli] gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli] gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli] gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli] gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli] gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli] gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli] gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli] gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli] gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli] gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli] gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli] gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli] gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli] gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli] gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli] gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli] gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli] gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli] gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli] gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli] gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli] gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli] gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli] gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli] gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli] gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli] gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli] gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli] gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli] gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli] gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli] gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli] gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli] gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli] gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli] gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli] gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli] gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli] gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli] gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli] gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli] gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 45.4 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + VT +Q Sbjct: 2 IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61 Query: 429 RAIGKVMELALGYQGGAKAF 448 R K + L Y G AF Sbjct: 62 RRSAKAINFGLIY--GMSAF 79 >gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 45.4 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 IA E +V AD + IE R++A ++ ++ L AF G+D++ T A F + VT +Q Sbjct: 2 IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61 Query: 429 RAIGKVMELALGYQGGAKAF 448 R K + L Y G AF Sbjct: 62 RRSAKAINFGLIY--GMSAF 79 >gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase Length = 924 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G +V D + +E R+L + + + +G DL+ + +F VA +V+KDQR Sbjct: 626 GDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRT 685 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLN 460 K ++ + YQ A+ + G+ ++ Sbjct: 686 ASKKIQFGIVYQESARGLSEDLRAEGITMS 715 >gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] Length = 908 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEILIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1] Length = 924 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G +V D + +E R+L + + + +G DL+ + +F VA +V+KDQR Sbjct: 626 GDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRT 685 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLN 460 K ++ + YQ A+ + G+ ++ Sbjct: 686 ASKKIQFGIVYQESARGLSEDLRAEGITMS 715 >gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702] Length = 901 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 29/159 (18%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ L+EA+ DGR+ T GA+ TGR S QN+P + + Sbjct: 613 IDGLIEAVADDGRIHTTFNQRGAA-TGRLSSSDPNLQNIPVRTEAGRR------------ 659 Query: 351 TSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R G L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 660 -------------IRGAFRVGTGYATLITADYSQIEMRVMAHLSQDPGLIEAYRAGEDLH 706 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ F+V VT + R K M L Y G AF Sbjct: 707 NYVGSKVFDVPVEHVTPELRRRVKAMSYGLVY--GLSAF 743 >gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116] gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116] Length = 907 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 668 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHAETASKLFKIEEKE 727 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 728 ITPNLRRIAKSINFGIIYR 746 >gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP] gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP] Length = 897 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 330 PRPSRSHEELDQ--IITHLPTSITSDPDPLQIISD---CVRSCVIASEGKKLVVADLAGI 384 PR R H Q + T +S+ + + I S+ +R IA G +LV AD + + Sbjct: 621 PRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEEGRQIRKGFIADGGFRLVAADYSQL 680 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A +AG++ +AF+ G D++ T A+ + + V +QR K + + Y Sbjct: 681 ELRLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDESTVDVNQRRAAKTVNFGVLY 737 >gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S] gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S] Length = 908 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597] gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597] Length = 935 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H Q + ++DP+ LQ I +R IA EGK L+ D + Sbjct: 656 PETGRVHTSYQQTGANTGRLASTDPN-LQNIPVRSEEGRRIREAFIAEEGKVLLSLDYSQ 714 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA +A +AF+ G+D++ T + F V ++T + R K + + Y Sbjct: 715 IELRILAHIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIY 772 >gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] Length = 931 Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 27/151 (17%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + +N D GR+ + GAS TGR + QN+P RS E Sbjct: 644 DALQDHINKDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 687 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R +A EGK LV D + IE R+LA +A +AF+ G D++ Sbjct: 688 ----------GRRIREAFVAEEGKVLVALDYSQIELRILAHIADIPELKQAFKDGIDIHA 737 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F V ++T D R K + + Y Sbjct: 738 LTASEMFGVPLDEMTPDIRRQAKAINFGVIY 768 >gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] Length = 875 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R + +G V AD + IE R Sbjct: 600 GRIHSKFNQTITATGRISSTEPNLQNIPVRVELGRLIRKVFVPEDGYIFVDADYSQIELR 659 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA +G+ ++A+ +D++ T ++ F++ +VT QR K + + Y Sbjct: 660 VLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVTPLQRRNAKAVNFGIVY 713 >gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%) Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG L+ AD + IE R+LA ++ ++ + AF+ D++ T A F V + Sbjct: 609 LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668 Query: 423 QVTKDQRAIGKVMELALGY 441 QVT R+ K + + Y Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687 >gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens] Length = 312 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 17/168 (10%) Query: 328 NLPR------PSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLV 377 +LPR PS S Q I+ P IT+ + +I++ R+ ++S+G + Sbjct: 93 SLPRTGLQKYPSTSEAVNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFL 152 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 AD + IE R+L ++G+ LK F+ E D++ T ++ +V QVT R K + Sbjct: 153 AADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKV 212 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 A+ Y G +++A+ G+ + A ++ S ++++ ++F R Sbjct: 213 VYAVVYGAGK---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 255 >gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX] gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX] Length = 929 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII---SDC---VRSCVIASEG-KKLVVADLAGIE 385 R H Q +T +++P+ LQ I +D +R + EG ++L+ AD + IE Sbjct: 652 GRIHTTFHQTVTATGRLSSAEPN-LQNIPVRTDAGRRIRRAFVVGEGYEQLLTADYSQIE 710 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++ ++ ++AF +G D + +R F + QV + RA K M L Y Sbjct: 711 LRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKAMNYGLAY 766 >gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] Length = 908 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a] Length = 908 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] Length = 898 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 11/133 (8%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQII---SDCVRSCVIASEGKK----LVVADLAGIEA 386 R H +Q T +SDP+ LQ + SD + +A + +K ++ AD + IE Sbjct: 626 RVHASFNQTGTATGRLSSSDPN-LQNLPGRSDEGKEIRMAVKPQKDGWYILGADYSQIEL 684 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA + + + AF+ +D+++ T + F V+ +T++ R IGK++ A+ Y G Sbjct: 685 RVLAHITEDPNLINAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFAIVY--GVS 742 Query: 447 AFQKMASTTGLNL 459 + +A TGL++ Sbjct: 743 PYG-LAKRTGLDV 754 >gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1] gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1] Length = 789 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 36/212 (16%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--- 290 ++L LF + GL T+T T + L K P +++ + ++ + LK Sbjct: 444 KQLSFILFEKLGLEPAKKTKTGFSTSEEALQELKFKNPGHVELIDYILKYRELSKLKSTY 503 Query: 291 -LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 LN L+ M D R+ T + G + TGR S QN+P S Sbjct: 504 TLN-LLNYMADDKRIHTTFKQTGTA-TGRISSINPNLQNIPVGS---------------- 545 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +R C A +G + V D + IE R+LA ++ ++ + AF ED++ Sbjct: 546 ---------IYGKRIRECFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFINDEDIH 596 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T F V +V R + K + + Y Sbjct: 597 NKTAKEIFGV--EEVDPKHRRLAKAVNFGIIY 626 >gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] Length = 853 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 25/139 (17%) Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375 TGR + QN+PRP D D +I RS GK Sbjct: 553 TGRLNSFKPNGQNVPRP--------------------DNDDFKI-----RSFFAPKPGKI 587 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L D +G E R++AW + ++ ++ F T D++ T + + +TK +R K Sbjct: 588 LFFIDFSGFELRLIAWKSNDEVMIELFNTNGDMHRRTASALTGKPESDITKIERTNAKAG 647 Query: 436 ELALGYQGGAKAFQKMAST 454 + Y G A QK T Sbjct: 648 NFGIAYGGTEYALQKTFKT 666 >gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2] gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2] Length = 938 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (52%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A +GK +V D + IE R+LA +AG +AF G D++ T + F+V + Sbjct: 698 IREAFVAEDGKVIVSLDYSQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDE 757 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 758 MTPDVRRQAKAINFGVIY 775 >gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1] gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] Length = 994 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A +G+KL+ AD + IE RVLA MA +AF G D++ T + F V Sbjct: 751 IRKAFVADKGRKLISADYSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEG 810 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R K + + Y G AF +A+ GL+ +KT Sbjct: 811 MDPMVRRRAKAINFGIIY--GISAF-GLAAQLGLSRGEAGDYIKT 852 >gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%) Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + EG L+ AD + IE R+LA ++ ++ + AF+ D++ T A F V + Sbjct: 609 LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668 Query: 423 QVTKDQRAIGKVMELALGY 441 QVT R+ K + + Y Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687 >gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03] gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07] gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22] gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26] gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32] gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12] Length = 933 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H IT ++DP+ LQ I +R IA GKKL+ AD + I Sbjct: 655 RNDRVHTSFQMAITSTGRLSSTDPN-LQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQI 713 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 E R+LA +A +AF+ G+D++ T + FN+ Sbjct: 714 ELRLLADVANIPALREAFQLGQDIHARTASEVFNI 748 >gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly] gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly] Length = 922 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 44/82 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ ++G + AD + IE +LA ++ ++ ++AF +D+++ T ++ F V A Sbjct: 682 IRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTHKKDIHIQTASKLFKVDEAN 741 Query: 424 VTKDQRAIGKVMELALGYQGGA 445 +T R I K + + Y+ A Sbjct: 742 ITPSMRRIAKSINFGIIYRMSA 763 >gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] Length = 921 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 10/133 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q + +SDP+ LQ I +R +A +G+K+V D + I Sbjct: 644 RTGRVHTSYHQAVAATGRLSSSDPN-LQNIPVRSEEGRKIRQAFLAPKGRKIVACDYSQI 702 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ AFE G D++ T A + +V+ + R K + L Y G Sbjct: 703 ELRIMAHLSDDKGLTDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIY--G 760 Query: 445 AKAFQKMASTTGL 457 AF +A GL Sbjct: 761 MSAF-GLAKQLGL 772 >gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13] Length = 851 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 31/166 (18%) Query: 290 KLNT-----LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 KLN+ L++ + DGR+ + +RTGR S QN+P + +E+ Sbjct: 558 KLNSTYVAGLLKTVAPDGRIHTCFK-QTETRTGRISSTEPNMQNIPVRTELGKEM----- 611 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 R +A G+ L+ AD + IE R+LA + + +AF + Sbjct: 612 --------------------RKFFVAPRGRILLDADYSQIELRILANLCEDANMQQAFLS 651 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 G D++ +T A+ F V VT R+ K + + Y GA + + Sbjct: 652 GADIHASTAAQVFGVPREAVTPQMRSAAKAVNFGIIYGIGAYSLSQ 697 >gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7] Length = 921 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383 P+ + H +Q +T +++P+ I + +R I L AD + Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF++G D++ T A+ + + +VT D R K + Y Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 759 >gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134] gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134] Length = 955 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R+ + S+ L+ AD + IE R++A + + +KAF+ GED++ TT ++ + V QV Sbjct: 712 RAFIPRSDEFVLLAADYSQIELRIMAEFSQDATMIKAFQNGEDIHATTASKIYKVPLDQV 771 Query: 425 TKDQRAIGKVMELALGY 441 D R K + Y Sbjct: 772 DSDMRRKAKTANFGIIY 788 >gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] Length = 874 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 34/251 (13%) Query: 196 GYCVDVALAHTLNQIVDVERTKLD-----QELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 G +D A H ++ V++ER L EL + + + S + + L L L +G Sbjct: 483 GVGIDPAALHEMS--VELERRILQVSQEIYELAGMQFNISSPKQLGDVLFGKLGLPSGKK 540 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 + +T VL P A +V + R ++ L + + DGR+ T Sbjct: 541 TKSGGYSTDAEVLEELAAAYPIAARVLDYRTLTKLKGTY-VDALGQLIARDGRIHTTFAQ 599 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 A TGR S D + ++P I +R +A Sbjct: 600 TVAE-TGRLSSK-----------------DPNLQNIPIRIEE--------GRRIRKAFVA 633 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G L+ AD + IE RV+A +G+ +AF +D++ T A F V QVT + R Sbjct: 634 RPGCVLLSADYSQIELRVVAHFSGDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRR 693 Query: 431 IGKVMELALGY 441 K + L Y Sbjct: 694 QAKAVNFGLIY 704 >gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 561 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 +R H Q++T +++P+ LQ I R+ + ++ +V AD + IE Sbjct: 285 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 343 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ +++F ED+++ T A F V +VT + R K + + Y Sbjct: 344 LRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGIIY 399 >gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] Length = 908 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] Length = 881 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Query: 363 CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ Sbjct: 639 LIRKAFVPEEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEK 698 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P VT + R K + + Y Sbjct: 699 PEDVTPNDRRNAKAVNFGVVY 719 >gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] Length = 945 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H +Q +T +SDP+ LQ I +R C I AD + I Sbjct: 668 RTGRIHTSFNQALTATGRLSSSDPN-LQNIPVRTDDGKEIRKCFIPEPECVFFSADYSQI 726 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ ++AF +G D++ T A+ +++ VT QR K + Y Sbjct: 727 ELRIMAHLSKDENMIEAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANFGIIY 783 >gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] Length = 980 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +GKKL+ AD + IE RVLA MA +AF G D++ T + F V Sbjct: 737 IRQAFIAEKGKKLISADYSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEG 796 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R K + + Y G AF +A+ G+ +KT Sbjct: 797 MDPMVRRRAKAINFGIIY--GISAF-GLANQLGIARGEAGDYIKT 838 >gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] Length = 908 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4] gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4] Length = 949 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R I AD + IE R++A ++G++ L+AF +G D++ T A+ + + + Sbjct: 710 IRKAFIPDADCLFFSADYSQIELRIMAHLSGDKNMLEAFNSGHDIHTATAAKIYKIPLEE 769 Query: 424 VTKDQRAIGKVMELALGY 441 VT D R K + Y Sbjct: 770 VTSDMRRKAKTANFGIIY 787 >gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13] gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13] Length = 925 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383 P+ + H +Q +T +++P+ I + +R I L AD + Sbjct: 646 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQ 705 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF++G D++ T A+ + + +VT D R K + Y Sbjct: 706 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 763 >gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1] gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1] Length = 908 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1] Length = 908 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4] gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4] Length = 793 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A +G KL+ AD + IE RVLA MA KAFE G D++ T + F Sbjct: 550 IRQAFVAEKGMKLISADYSQIELRVLAHMADIPQLKKAFEEGLDIHAMTASEMFGTPIEG 609 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R K + + Y G AF +A+ G++ + +KT Sbjct: 610 MDPMVRRQAKAINFGIIY--GISAF-GLAAQLGISRGEASDYIKT 651 >gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B] gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B] Length = 921 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383 P+ + H +Q +T +++P+ I + +R I L AD + Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF++G D++ T A+ + + +VT D R K + Y Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 759 >gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614] gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614] Length = 996 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G KL+ AD + IE RVLA MA KAF+ G D++ T + F Sbjct: 753 IRKAFIAEKGHKLISADYSQIELRVLAHMADIPQLKKAFDDGLDIHAMTASEMFGTPIEG 812 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R K + + Y G AF +A+ G++ +KT Sbjct: 813 MDPMVRRRAKAINFGIIY--GISAF-GLANQLGISRGEAGDYIKT 854 >gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] Length = 723 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 12/97 (12%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A +G KLV D + IE RVLA+ +G++ A++ G+DLY ++ + V Sbjct: 461 IRKIFKARDGYKLVGGDFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVYGVPYED 520 Query: 424 V------------TKDQRAIGKVMELALGYQGGAKAF 448 K +R K + L + Y+ GA+A Sbjct: 521 CREFYPDGTVNPEGKHRRTTMKSVLLGIMYERGAQAI 557 >gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] Length = 880 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ SDG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIASDGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3] gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3] Length = 921 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383 P+ + H +Q +T +++P+ I + +R I L AD + Sbjct: 642 PQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQ 701 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++G+ ++AF++G D++ T A+ + + +VT D R K + Y Sbjct: 702 IELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 759 >gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] Length = 908 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1] gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1] Length = 922 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 44/82 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ ++G + AD + IE +LA ++ ++ ++AF +D+++ T ++ F V A Sbjct: 682 IRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTHKKDIHIQTASKLFKVDEAN 741 Query: 424 VTKDQRAIGKVMELALGYQGGA 445 +T R I K + + Y+ A Sbjct: 742 ITPSMRRIAKSINFGIIYRMSA 763 >gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] Length = 908 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] Length = 908 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] Length = 908 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40] Length = 908 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] Length = 908 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] Length = 908 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 41/79 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G + D + IE R+LA + ++ L AF ED++ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL AHL K+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741 >gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] Length = 891 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++ + +KAF + ED++ T + F+V QV+ +QR K + Sbjct: 668 ADYSQIELRLLAHLSEDPVLIKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFG 727 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L Y G +AF +A G++ T A ++ Sbjct: 728 LIY--GQQAF-GLAHELGIDTKTAAAFIQ 753 >gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1264 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%) Query: 316 TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S CV P QNLPR ITS + + R C +A+ G Sbjct: 982 TGRLS-CVEPNLQNLPR----------------NGITSTEEEGEEDLLGFRRCFVAAAGC 1024 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ D IE RVLA + G+ +KA + D++ T F P V+ ++R++ K Sbjct: 1025 VLLSIDYQQIELRVLAHLCGDPALVKALTSSADIHQTIAEVVFKKKP--VSTEERSLAKR 1082 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK--TNSAP 472 + + Y G K +A+ G+ ++ H+ TN+ P Sbjct: 1083 VVFGVLYGAGPKT---LATHMGVTVDRALHITSLLTNAFP 1119 >gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] Length = 891 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 32/210 (15%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+ LF E G+ T+T + + L + F + A R V +L VE Sbjct: 546 KQLQVVLFDELGMPRTKRTKTGYTTDADALQGLFAKTQHPFLEHLLAHRD-VTRLRQTVE 604 Query: 297 AMNS----DGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + DGR+ T Q + A TGR S QN+P + S + + Sbjct: 605 GLQKTVAPDGRIHTTYAQTIAA--TGRLSSADPNLQNIPIRTESGRRIREAF-------- 654 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 CV + L+ AD + IE R++A ++ + ++AF TGED + Sbjct: 655 -----------CVGPGF-----ETLLTADYSQIEMRIMAHLSEDAGLIEAFRTGEDFHTV 698 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A+ F+ P + RA K M L Y Sbjct: 699 MAAKVFDRDPGDIDGGLRARIKAMNYGLAY 728 >gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] Length = 879 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G + D + IE R+LA + ++ L AF ED++ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL AHL K+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741 >gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] Length = 872 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q IT +++P+ P+++ + +R I +G V AD + IE R Sbjct: 597 GRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEDGYVFVDADYSQIELR 656 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA +G++ + A++ D++ T ++ F+ +VT QR K + + Y G + Sbjct: 657 ILAHCSGDEQLINAYKEARDIHRITASQVFHTPFEEVTDLQRRNAKAVNFGIVY--GISS 714 Query: 448 F 448 F Sbjct: 715 F 715 >gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804] gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii] Length = 948 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 11/134 (8%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R R H Q +SDP+ LQ I VR +A G LV AD + I Sbjct: 672 RTGRVHTHYSQAAVVTGRLASSDPN-LQNIPVRTEAGRRVREAFVAEHGV-LVSADYSQI 729 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ + +AF G+D++ T + F VA +V DQR K + L Y G Sbjct: 730 ELRIMAHVSDDANLQQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIY--G 787 Query: 445 AKAFQKMASTTGLN 458 F +AS G+ Sbjct: 788 MGVF-GLASNLGIT 800 >gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] Length = 884 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASE-GKKLVVADLA 382 P S+ H Q +T + DP+ LQ I +R I S G ++ +D + Sbjct: 606 PDDSKVHTRYLQTLTQTGRLSSVDPN-LQNIPVRSEEGRLIRQAFIPSHPGWQIFSSDYS 664 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 IE RVLA + +Q AF+ GED++ TT R F + + +VT + R K + + Y Sbjct: 665 QIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQAKAVNFGIVY 724 Query: 442 QGGAKAFQKMASTTGL 457 G F +AS TG+ Sbjct: 725 --GISDF-GLASNTGI 737 >gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5] gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5] Length = 608 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 110/485 (22%), Positives = 177/485 (36%), Gaps = 105/485 (21%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT------ 67 +D G+ Y +D + L FG +P E W V+P A VT Sbjct: 40 LDTETTGLNIYQDDFGIRLIQFG---NPWESW------VLPVERGGAFVGAAVTALQKVQ 90 Query: 68 -IVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL--PSALKAVGEALKL----- 118 V HN+ F+ V++ L +P+ + W + L P A K G KL Sbjct: 91 RFVIHNAAFDLQVIERT--LGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTK 148 Query: 119 ---SSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 EE K +AR K L D + P++ Y D + Sbjct: 149 FYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYEL-------YAGMDTILVSR 201 Query: 171 IFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + ++ PL + E +L + + G+ +DV + L+ + + +++ + Sbjct: 202 LLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADM-LRKSEHYTAV 260 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 YG V S EKL L TG+ ++ T T ++V N +L + N + Sbjct: 261 ARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQV---NAELLEALAEEGNALAK 315 Query: 283 ASRSAV-------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 A+ A + +E +++ R+ + L A RT R S QNLP Sbjct: 316 AAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLP----- 369 Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +D VR C +A G+ +V D E RVLA +A Sbjct: 370 ------------------------ANDWMVRRCFLADPGQLMVSVDYQAQELRVLAALAN 405 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AFE DL+ T A R +GK+ Y GGA K+A+ Sbjct: 406 DRTMIRAFEEEADLHQVT---------ADAAGMDRKVGKMANFLTVYGGGAG---KLATN 453 Query: 455 TGLNL 459 G+ Sbjct: 454 AGITF 458 >gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1] Length = 833 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 +R H Q++T +++P+ LQ I R+ + ++ +V AD + IE Sbjct: 557 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 615 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ +++F ED+++ T A F V +VT + R K + + Y Sbjct: 616 LRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGIIY 671 >gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1] gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1] Length = 946 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 121/303 (39%), Gaps = 54/303 (17%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLN 208 EY D VT +++ L+P S+E + L + + G VD A L+ Sbjct: 511 EYAAEDADVTLRLYRMLKPRLSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARLAKLS 570 Query: 209 QIVDVERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV--- 262 + L++E+ + + + S + E L + + G + +T Q V Sbjct: 571 EEFATTTASLEKEIHEIAGQQFAVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQSVLEN 630 Query: 263 LSSNKKLTPQAIQVFN----NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 L+ ++ P A +V ++++++ + L+ E GR+ + +GA +TGR Sbjct: 631 LAKDEAAKPIADKVLEWRHLSKLKSTYTDALQAQINPET----GRVHTSYSLVGA-QTGR 685 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378 S QN+P I T I +R + +G L+ Sbjct: 686 LSSTDPNLQNIP-----------IRTE--------------IGRTIREAFVPEDGNVLLA 720 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+ A MA +AF GED++ T F +VT+D RA K + A Sbjct: 721 ADYSQIELRLAAHMADVDTLKEAFANGEDIHARTATEMF----GEVTRDTRARAKTINFA 776 Query: 439 LGY 441 + Y Sbjct: 777 ILY 779 >gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON] gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON] Length = 850 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLAG 383 P + H + +Q +T +++P+ I + +R + S L++ AD + Sbjct: 571 PITHKIHSKFNQTVTVTGRISSTEPNLQNIPVKTELGHQIRKAFVPSSSDYLLLDADYSQ 630 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA M+ +Q + AF G+D++ T + F + QVT R+ K + + Y Sbjct: 631 IELRVLAHMSQDQNMIDAFLKGQDIHARTASEVFGIPLEQVTPLMRSRAKAVNFGIVY 688 >gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] Length = 875 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 ++ AD + IE RVLA + G+ +AF ED++ TT + FNVA +VT R K + Sbjct: 648 ILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAV 707 Query: 436 ELALGY 441 + Y Sbjct: 708 NFGIVY 713 >gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] Length = 873 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q IT +++P+ P+++ + +R + +G + AD + IE R+ Sbjct: 599 RIHSTFNQTITATGRISSTEPNLQNIPIRMELGRKIRKVFVPEDGFIFMDADYSQIELRL 658 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA M+G+ ++A+ D++ T ++ F +VT QR+ K + + Y G +F Sbjct: 659 LAHMSGDDTLIEAYNEDRDIHKITASKVFKTPLDEVTPRQRSNAKAVNFGIVY--GISSF 716 >gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley] gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley] Length = 608 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 110/485 (22%), Positives = 177/485 (36%), Gaps = 105/485 (21%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT------ 67 +D G+ Y +D + L FG +P E W V+P A VT Sbjct: 40 LDTETTGLNIYQDDFGIRLIQFG---NPWESW------VLPVERGGAFVGAAVTALQKVQ 90 Query: 68 -IVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL--PSALKAVGEALKL----- 118 V HN+ F+ V++ L +P+ + W + L P A K G KL Sbjct: 91 RFVIHNAAFDLQVIERT--LGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTK 148 Query: 119 ---SSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 EE K +AR K L D + P++ Y D + Sbjct: 149 FYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYEL-------YAGMDTILVSR 201 Query: 171 IFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + ++ PL + E +L + + G+ +DV + L+ + + +++ + Sbjct: 202 LLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADM-LRKSEHYTAV 260 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 YG V S EKL L TG+ ++ T T ++V N +L + N + Sbjct: 261 ARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQV---NAELLEALAEEGNALAK 315 Query: 283 ASRSAV-------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 A+ A + +E +++ R+ + L A RT R S QNLP Sbjct: 316 AAIEAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLP----- 369 Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +D VR C +A G+ +V D E RVLA +A Sbjct: 370 ------------------------ANDWMVRRCFLADPGQLMVSVDYQAQELRVLAALAN 405 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AFE DL+ T A R +GK+ Y GGA K+A+ Sbjct: 406 DRTMIRAFEEEADLHQVT---------ADAAGMDRKVGKMANFLTVYGGGAG---KLATN 453 Query: 455 TGLNL 459 G+ Sbjct: 454 AGITF 458 >gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994] gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994] Length = 909 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A GKKL+ D + IE R+LA + + + AF G D+++ T F A+ Sbjct: 674 IREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNEGHDIHMQTAIALFG---AE 730 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +R I K + L Y G K K++ T G+ Sbjct: 731 DASRKRNIAKTVNFGLLYGMGQK---KLSDTLGI 761 >gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18] gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18] Length = 890 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 614 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 673 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 674 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728 >gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] Length = 872 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 +R H Q++T +++P+ LQ I R+ + ++ +V AD + IE Sbjct: 596 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 654 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ +++F ED+++ T A F V +VT + R K + + Y Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGIIY 710 >gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4] gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4] Length = 884 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R I S EG + AD + IE Sbjct: 608 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIEL 667 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 668 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 722 >gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3] gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3] Length = 890 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 614 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 673 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 674 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728 >gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] Length = 1036 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 41/87 (47%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +RS A EG + D + IE R++A ++ + L+AF D++ T + F ++ Sbjct: 797 IRSAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLEAFNNDFDVHTHTASLVFETELSE 856 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQK 450 VTK QR K + + + G K Sbjct: 857 VTKQQRYAAKAVNFGIMFGQGPYGLAK 883 >gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis] Length = 241 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382 P + H Q +T + DP+ LQ I ++ V EG KL +D + Sbjct: 42 PETGKIHTRYQQTLTQTGRLSSVDPN-LQNIPIRMEEGRKIRQAFVPQQEGWKLFASDYS 100 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 IE RVLA ++G++ +AF G+D++ +T F + P VT + R K + + Y Sbjct: 101 QIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAVNFGVVY 160 >gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 921 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 31/151 (20%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L+ +N + GR+ + +GA +TGR S QN+P + T I Sbjct: 634 DALIGKINPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIP---------------IRTEI 677 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + +R+ IA +G L+ AD + IE R+ A +A E+ L+AF+ ED++ Sbjct: 678 GRE----------IRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHA 727 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F V ++ RA K + A+ Y Sbjct: 728 LTAKQLFG----HVDRESRARAKTINFAILY 754 >gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1] gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1] Length = 875 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAGIEA 386 ++ H +Q +T ++DP+ P+++ +R I SE L+ AD + IE Sbjct: 599 NKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSEKNWLMFAADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +AG++ + AF G D++ T F+V VT + R K + + Y Sbjct: 659 RVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAVNFGIVY 713 >gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33] gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33] gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84] gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7] gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407] gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 05ZYH33] gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 98HAH33] gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84] gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407] gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7] gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1] Length = 878 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%) Query: 237 EKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L T LF + GL LE +T T VL + P ++ R + + Sbjct: 532 KQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVV 591 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L +A+ DG++ T ++TGR S QN+P L+Q Sbjct: 592 G-LQDAILEDGKIH-TRYVQDLTQTGRLSSTDPNLQNIPV------RLEQ---------- 633 Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + S E L+ +D + IE RVLA ++ +Q ++AF+ G D++ Sbjct: 634 ---------GRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHT 684 Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 +T R F + A+ VT + R K + + Y Sbjct: 685 STAMRVFGIEKAEYVTPNDRRNAKAVNFGVVY 716 >gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150] gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150] Length = 879 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V ++E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 700 VTPNDRRNAKAVNFGIVY 717 >gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29] gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29] Length = 890 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 614 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 673 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 674 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728 >gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17] gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17] Length = 877 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R I S EG + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 715 >gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] Length = 877 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R I S EG + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 715 >gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] Length = 874 Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 27/152 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++A+ +GR+ T + AS TGR S QN+P + + + Sbjct: 588 IEGLIKAVADNGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTEAGRK------------ 634 Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS G + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 635 -------------IRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDLH 681 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R F+V QVT + R K M L Y Sbjct: 682 NFVGSRVFDVPIDQVTPELRRRVKAMSYGLVY 713 >gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] Length = 879 Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V ++E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 700 VTPNDRRNAKAVNFGIVY 717 >gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44] gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44] Length = 884 Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R I S EG + AD + IE Sbjct: 608 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSTEGWVMYAADYSQIEL 667 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 668 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFGIVY 722 >gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens] Length = 900 Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S H + I H P IT+ + +I++ R+ ++S+G + AD + IE Sbjct: 571 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 629 Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 R+L ++G+ LK F+ E D++ T ++ +V QVT R K + A+ Y G Sbjct: 630 RILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 689 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +++A+ G+ + A ++ S ++++ ++F R Sbjct: 690 K---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 723 >gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b] gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b] Length = 864 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 73/313 (23%), Positives = 122/313 (38%), Gaps = 91/313 (29%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R ASE G L D + IE R++A M+ ++ + AF ED++ +T A F V+ Sbjct: 624 IRKAFTASEPGWVLYAVDYSQIELRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAE 683 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT R K + + Y S GL+ N L T ++A+ F Sbjct: 684 EVTSLMRRQAKAVNFGIIYG---------ISDYGLSQN----LGITR------KEAQTFI 724 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E P F+ A ER ++ F +T + ++ Sbjct: 725 DTYFEQFPGVKT---FMDAAIERARE-----------------HGFVET-------MLKR 757 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR++P ++ R+ R R+ +NT + Sbjct: 758 RRNIPDIH--------------SRNFNLRGFA-ERTAINTP------------------I 784 Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS--N 654 Q + DI+ + M +NA+K ++L VHDE++ E P T+E A L L+T Sbjct: 785 QGTAADIIKKAMIDVDHALNASKLQSKLLLQVHDELIFEGP-TEEMEA--LEKLVTEAME 841 Query: 655 PSWAKGLPLKAEG 667 + +PL+A+G Sbjct: 842 QTVTLDVPLRADG 854 >gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] Length = 879 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G + D + IE R+LA + ++ L AF ED++ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL AHL K+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741 >gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 873 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVA-DLAG 383 P R H +Q+ T ++DP+ I + +R + +G L+++ D + Sbjct: 594 PNTGRIHTHFNQMATVTGRLSSTDPNLQNIPTRTEVGKQMRRMFVPGKGYDLLMSCDYSQ 653 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E RV+A +AG++ + AF G+D++ T + F V VT R+ K + + Y Sbjct: 654 VELRVMASIAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGIIY 711 >gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116] gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116] gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1] gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni 327] Length = 879 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G + D + IE R+LA + ++ L AF ED++ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL AHL K+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741 >gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] Length = 788 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA GK L+VAD +E R+LA M+G + L+AFE G D + T + N+ P Sbjct: 522 IRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRT---ALNMYP 576 >gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] Length = 788 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA GK L+VAD +E R+LA M+G + L+AFE G D + T + N+ P Sbjct: 522 IRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRT---ALNMYP 576 >gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii] Length = 1585 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 14/160 (8%) Query: 331 RPSRSHEELDQIITH-----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 R S H + I H P + D IS R+ ++S+G + AD + IE Sbjct: 1256 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKTLTISP--RAMFVSSKGHTFLAADFSQIE 1313 Query: 386 ARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 R+LA ++G+ LK F+ E D++ T ++ +V QVT R K + A+ Y Sbjct: 1314 LRILAHLSGDPELLKLFQEAERDDVFSTLTSQWKDVPMEQVTHADREQTKKVVYAVVYGA 1373 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 G +++A+ G+ + A ++ S ++++ ++F R Sbjct: 1374 GK---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 1408 >gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] Length = 905 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 84/181 (46%), Gaps = 11/181 (6%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVVAD 380 P+ R H +QI T +SDP+ P++ +R +A + L+ D Sbjct: 622 PKLRDEKDRVHTTFNQIGTTTGRLSSSDPNLQNIPVKTDEGIKIRQGFVAEKNSVLMGID 681 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + IE RVLA ++G++ +A++ DL+ T + F ++ +V++++R I K + ++ Sbjct: 682 YSQIELRVLAQLSGDENLREAYQNSMDLHSLTARKIFELSDEEEVSREERIIAKTINFSI 741 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y G AF +A G++ + + + ++ + F + + E +H + F Sbjct: 742 IY--GKTAFG-LAKELGISQKEASEYI--DRYFNQYPKVKGFEKEIVEFTEKHGYTETFF 796 Query: 500 G 500 G Sbjct: 797 G 797 >gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28] gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28] Length = 890 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 614 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIIYAADYSQIEL 673 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 674 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728 >gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens] gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens] gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens] gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens] gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens] gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct] gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct] gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct] gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct] Length = 900 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S H + I H P IT+ + +I++ R+ ++S+G + AD + IE Sbjct: 571 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 629 Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 R+L ++G+ LK F+ E D++ T ++ +V QVT R K + A+ Y G Sbjct: 630 RILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 689 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +++A+ G+ + A ++ S ++++ ++F R Sbjct: 690 K---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 723 >gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem] gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem] Length = 608 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 116/494 (23%), Positives = 178/494 (36%), Gaps = 111/494 (22%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L +D ET T GI Y D + L FG +P E W V+P A Sbjct: 38 LGLDTET------TDLGI--YKPDFGIRLIQFG---NPWESW------VLPVERGGAFVG 80 Query: 64 TDVT-------IVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL--PSALKAVG 113 VT V HN+ F+ V++ L +P+ + W + L P A K G Sbjct: 81 AAVTALQKVQRFVIHNAAFDLQVIERT--LGVPMEQMWPKVEDTKIYSHLVDPRAYKEGG 138 Query: 114 EALKL--------SSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEY 160 KL EE K +AR K L D + P++ Y Sbjct: 139 TGHKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYEL-------Y 191 Query: 161 CKGDVTVTREIFKRLEPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D + + ++ PL + E +L + + G+ +DV + L+ + Sbjct: 192 AGMDTILVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADM- 250 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 + + + + YG V S EKL L TG+ ++ T T ++V N +L Sbjct: 251 LRKAEHYTAVARYAYG-VDSVNSTEKLADGL-ERTGVKIKGRTATGKRQV---NAELLEA 305 Query: 273 AIQVFNNRMRASRSAV-------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + N +A+ A + +E ++D R+ + L A RTGR S Sbjct: 306 LAEEGNALAKAAIEAKKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTGRMSTSNPS 364 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QNLP VR C +A G+ +V D E Sbjct: 365 AQNLPSGDW----------------------------MVRRCFLADPGQLMVSVDYQAQE 396 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA +A ++ ++AFE DL+ T A R +GK+ Y GGA Sbjct: 397 LRVLAALANDRTMIRAFEEEADLHQVT---------ADAAGMDRKVGKMANFLTVYGGGA 447 Query: 446 KAFQKMASTTGLNL 459 K+A+ G+ Sbjct: 448 G---KLATNAGITF 458 >gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] Length = 831 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 6/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAGI 384 R + H +Q T +S+P+ P+++ + +R I S G +V AD + I Sbjct: 553 RTGKLHTTFNQTGTLTGRLASSEPNLQNIPIRLELGRKLRKMFIPSPGYDYIVSADYSQI 612 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+LA + E ++A++ GED++ T + F V+ +VT + RA K + + Y Sbjct: 613 ELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVNFGIVY 669 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G + D + IE R+LA + ++ L AF ED++ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL AHL K+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741 >gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 330 Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 41/175 (23%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSI 350 + L ++ DGRLRG +G ++T R S C P Q++P+ + + + Sbjct: 59 DKLKNQLSKDGRLRGHWNLIG-TKTSRMS-CQKPNFQSIPKEMKKYFQ------------ 104 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 A E ++ D + IE R+LA + Q + AF G DL+V Sbjct: 105 -------------------AEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHV 145 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF---QKMASTTGLNLNTF 462 T N ++ +R +GKV+ L Y G F +K+ + G N++ + Sbjct: 146 ETAKAILN--QESISDSERKLGKVVNFGLIY--GLTPFGLKEKINAIPGFNISEY 196 >gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC] gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC] Length = 869 Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLV 377 P Q P SR H +Q+ T DP+ I R ++ + + Sbjct: 586 LPRQVDPSTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCNTHQNNYFL 645 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R LA ++ ++ AFE+ ED++ T ++ F+V +VTK QR K + Sbjct: 646 SADYSQIELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVNF 705 Query: 438 ALGYQGGAKAFQKM 451 + Y A K+ Sbjct: 706 GIIYGQQAYGLSKI 719 >gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678] Length = 880 Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 40/240 (16%) Query: 215 RTKLDQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET-----TCQRVL 263 +T+ ++ LESLT Y L + ++L T LF + GL LE +T T VL Sbjct: 506 QTENEKTLESLTQEIYDLAGQEFNINSPKQLGTVLFEDMGLPLEYTKKTKTGYSTAVDVL 565 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P ++ R + S+ + L EA+ +DG++ T ++TGR S Sbjct: 566 ERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQDLTQTGRLSSVD 623 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLA 382 QN+P L+Q +R + L+ +D + Sbjct: 624 PNLQNIPV------RLEQ-------------------GRLIRKAFVPEWADSVLLSSDYS 658 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R K + + Y Sbjct: 659 QIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVY 718 >gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B] gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B] Length = 892 Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 39/63 (61%) Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE RVLA ++ ++ LKAF+ D++ T A+ F V+ V++ R +GK++ A Sbjct: 671 ADYSQIELRVLAHVSKDENLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFA 730 Query: 439 LGY 441 + Y Sbjct: 731 IIY 733 >gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36] gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36] Length = 932 Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 27/151 (17%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + +N D GR+ + GAS TGR + QN+P RS E Sbjct: 645 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 688 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R +A GK LV D + IE R+LA +A +AF+ G D++ Sbjct: 689 ----------GRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELKQAFQDGIDIHA 738 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F V ++T D R K + + Y Sbjct: 739 LTASEMFGVPLDEMTSDVRRQAKAINFGVIY 769 >gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] Length = 932 Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 27/151 (17%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + +N D GR+ + GAS TGR + QN+P RS E Sbjct: 645 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIP--IRSEE------------- 688 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R +A GK LV D + IE R+LA +A +AF+ G D++ Sbjct: 689 ----------GRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELKQAFQDGIDIHA 738 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F V ++T D R K + + Y Sbjct: 739 LTASEMFGVPLDEMTSDVRRQAKAINFGVIY 769 >gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] Length = 867 Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Query: 364 VRSCVIASEG---KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +RS A++ + L+ D + IE R++A ++G++ ++AF+ GEDL+ + F V Sbjct: 624 IRSVFQAAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVP 683 Query: 421 PAQVTKDQRAIGKVMELALGY 441 VT QR+ K M L Y Sbjct: 684 IEDVTDQQRSKVKAMSYGLVY 704 >gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens] Length = 891 Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S H + I H P IT+ + +I++ R+ ++S+G + AD + IE Sbjct: 571 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 629 Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 R+L ++G+ LK F+ E D++ T ++ +V QVT R K + A+ Y G Sbjct: 630 RILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 689 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +++A+ G+ + A ++ S ++++ ++F R Sbjct: 690 K---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 723 >gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens] Length = 579 Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S H + I H P IT+ + +I++ R+ ++S+G + AD + IE Sbjct: 204 RLSAKHPNIQGISKH-PIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIEL 262 Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 R+L ++G+ LK F+ E D++ T ++ +V QVT R K + A+ Y G Sbjct: 263 RILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAG 322 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +++A+ G+ + A ++ S ++++ ++F R Sbjct: 323 K---ERLAACLGVPIQEAAQFLE--SFLQKYKKIKDFAR 356 >gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 921 Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 31/151 (20%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L+ +N + GR+ + +GA +TGR S QN+P + T I Sbjct: 634 DALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIP---------------IRTEI 677 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + +R+ IA +G L+ AD + IE R+ A +A E+ L+AF+ ED++ Sbjct: 678 GRE----------IRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHA 727 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F V ++ RA K + A+ Y Sbjct: 728 LTAKQLFG----HVDRESRARAKTINFAILY 754 >gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa] Length = 1413 Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 9/131 (6%) Query: 341 QIITHLPTSITSDPDPLQIISDCV----RSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 Q I+ LP I + + D + RS ++ EG+ + AD + IE R+LA ++G+ Sbjct: 1079 QGISKLPIQIGAPRNAKGEAGDALTVSARSLFVSPEGRSFLAADFSQIELRILAHLSGDP 1138 Query: 397 WKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 LK F+ E D++ ++ ++P VT+ R K + A+ Y G +++A+ Sbjct: 1139 ELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVVYGAGR---ERLAAC 1195 Query: 455 TGLNLNTFAHL 465 G+ L A Sbjct: 1196 LGVTLREAARF 1206 >gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381] gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+C ++ +G V D + IE R+LA + ++ L+AF ED++ T F + Sbjct: 644 MRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFREDEDIHSRTAISIFGTS--- 700 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 K++RA+ K + L Y GA K+++ G+ Sbjct: 701 -DKEKRAVAKTINFGLIYGMGA---SKLSNELGI 730 >gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] Length = 857 Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 38/277 (13%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 KR + E+ L ++ + RG +D A L+ + +LD ++ L G S Sbjct: 451 KRAQLYKDVERPLAHVLARMEVRGVRLDSAYLRGLSDSLGARAQELDARIQELA-GHPFS 509 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRV--------LSSNKKLTPQAIQVFNNRMRAS 284 ++L++ L+ E GL T+ T +R L + P ++ + + Sbjct: 510 VNSRDQLESVLYDELGLASGKKTKLTGKRSTAVSALEPLRDEHPIIPLLLE-YRELTKLK 568 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L LV + GRL T + TGR S QN+P S + E Sbjct: 569 GTYLDPLPNLVNPLT--GRLHTTFAQTAVA-TGRLSSLNPNLQNIPIRSETGRE------ 619 Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R IA +G L+ AD + IE R+LA +A + +AF Sbjct: 620 -------------------IRKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVG 660 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 G D++ T A+ V VT +QR K + + Y Sbjct: 661 GADIHRRTAAQVLGVMEDLVTPNQRRAAKTVNFGVLY 697 >gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126] gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126] Length = 879 Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V ++E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 700 VTPNDRRNAKAVNFGIVY 717 >gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] Length = 587 Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 1/122 (0%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 R R + E QI + P+ LQ I ++ EG K +VAD + IE R+ A Sbjct: 320 RNERVYGEFKQIGAATGRMSSLRPN-LQNIPKNLKYLFKPKEGYKFIVADYSQIELRIAA 378 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + AF G+DL+ T + + ++TK++R + K + L Y K+ + Sbjct: 379 QYTKDENMITAFNEGKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLVE 438 Query: 451 MA 452 A Sbjct: 439 YA 440 >gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri] Length = 869 Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 40/74 (54%) Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 V++S L+ D + IE R+LA M+ +Q + AF ED++ T + FN++ ++T + Sbjct: 634 VVSSPDNILLSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKDEITPN 693 Query: 428 QRAIGKVMELALGY 441 R K + + Y Sbjct: 694 IRRSAKAVNFGIIY 707 >gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3] gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3] Length = 878 Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%) Query: 237 EKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L T LF E GL LE +T T VL + P ++ R + + Sbjct: 532 KQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVV 591 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L +A+ DG++ T ++TGR S QN+P L+Q Sbjct: 592 G-LQDAILEDGKIH-TRYVQDLTQTGRLSSTDPNLQNIPV------RLEQ---------- 633 Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + S E L+ +D + IE RVLA ++ ++ ++AF+ G D++ Sbjct: 634 ---------GRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHT 684 Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 +T R F + A+ VT + R K + + Y Sbjct: 685 STAMRVFGIEKAEDVTPNDRRNAKAVNFGVVY 716 >gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1] gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC] Length = 869 Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLV 377 P Q P SR H +Q+ T DP+ I R ++ + + Sbjct: 586 LPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFRDTRQNNYFL 645 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R LA ++ ++ AFE+ ED++ T ++ F+V +VTK QR K + Sbjct: 646 SADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNF 705 Query: 438 ALGYQGGAKAFQKM 451 + Y A K+ Sbjct: 706 GIIYGQQAYGLSKI 719 >gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591] gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68] gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591] Length = 878 Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%) Query: 237 EKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L T LF E GL LE +T T VL + P ++ R + + Sbjct: 532 KQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVV 591 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L +A+ DG++ T ++TGR S QN+P L+Q Sbjct: 592 G-LQDAILEDGKIH-TRYVQDLTQTGRLSSTDPNLQNIPV------RLEQ---------- 633 Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + S E L+ +D + IE RVLA ++ ++ ++AF+ G D++ Sbjct: 634 ---------GRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHT 684 Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 +T R F + A+ VT + R K + + Y Sbjct: 685 STAMRVFGIEKAEDVTPNDRRNAKAVNFGVVY 716 >gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5] gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5] Length = 856 Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 9/87 (10%) Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPAQVTKD 427 IAS G L+ D + IE R+LA + +Q LKAFE ED+++ T F N A A Sbjct: 627 IASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQAQA----- 681 Query: 428 QRAIGKVMELALGYQGGAKAFQKMAST 454 +R I K + L Y GA+ K+A T Sbjct: 682 KRPIAKAINFGLIYGMGAR---KLAQT 705 >gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1] gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1] Length = 856 Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 9/87 (10%) Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPAQVTKD 427 IAS G L+ D + IE R+LA + +Q LKAFE ED+++ T F N A A Sbjct: 627 IASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQAQA----- 681 Query: 428 QRAIGKVMELALGYQGGAKAFQKMAST 454 +R I K + L Y GA+ K+A T Sbjct: 682 KRPIAKAINFGLIYGMGAR---KLAQT 705 >gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B] gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B] Length = 935 Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EG L+ D + IE R+LA +AG +AF G D++ T + F+V + Sbjct: 695 IREAFVAEEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEE 754 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 755 MTPEIRRKAKAINFGVIY 772 >gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354] Length = 955 Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P+ +R H + ++DP+ P++ I +R +A EG L+ AD + I Sbjct: 671 PKTNRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGREIRQAFVADEGNVLLAADYSQI 730 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R+ A MA +AF GED++ T F V +D RA K + A+ Y Sbjct: 731 ELRLAAHMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILY 783 >gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg] gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg] Length = 994 Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 33/270 (12%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L Y + RG VD + + V +L++++ L G+ + ++L Sbjct: 598 EMPLVYTLYDMEQRGIRVDTNGLKDYSDQLGVSIVELEKQIFELV-GVEFNINSPKQLGE 656 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF GL T+T +KL+ + I++ + ++ + LV + Sbjct: 657 ILFQRLGLSYGKKTKTGYSTSAEVLEKLSSEHPVIKLILQYRQLTKLKSTYADGLVSYVE 716 Query: 300 SDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DGR+ GT Q + A TGR S QN+P I L I Sbjct: 717 GDGRIHGTFNQTIAA--TGRLSSTEPNLQNIP-----------IRMELGRKI-------- 755 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 R I +G + AD + IE R+LA M+ + ++A+ +D++ T + F+ Sbjct: 756 ------RKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVFH 809 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +VT QR+ K + + Y G +F Sbjct: 810 TPFDEVTSAQRSNAKAVNFGIVY--GISSF 837 >gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] Length = 872 Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 +R H Q++T +++P+ LQ I R+ + S +V AD + IE Sbjct: 596 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIE 654 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ +++F ED+++ T + F V +VT + R K + + Y Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIY 710 >gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta] Length = 1484 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S H + I H P IT + +I++ R+ ++S+G + AD + IE Sbjct: 1173 RLSAKHPNIQGISKH-PIQITKPKNFKGKEDEILTISPRAMFVSSKGHTFLAADFSQIEL 1231 Query: 387 RVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 R+LA ++G+ LK F+ E D++ T ++ +V VT R K + A+ Y G Sbjct: 1232 RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPMEHVTHADREQTKRVVYAVVYGAG 1291 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +++A+ G+ + A ++ S ++++ ++F R Sbjct: 1292 K---ERLAACLGVPVQEAAQFLE--SFLQKYKKIKDFAR 1325 >gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72] Length = 880 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 565 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 I VR V+A G +LVVAD A +E R+LA +AG+ L +DLY R+F Sbjct: 325 IPKVVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 382 >gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018] gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] Length = 1033 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 14/146 (9%) Query: 309 QFLGA----SRTGRWSGCVFPPQNLPR--PSRSHEELDQIITHLPTSITSDPDPLQ---- 358 QFLGA T + V + R R H +Q I +SDP+ LQ Sbjct: 726 QFLGALLKHRETNKLKQIVQSLIDSARYEDGRIHTTFEQTIAATGRLSSSDPN-LQNIPN 784 Query: 359 --IISDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 ++ +R+ I ++ +L+ D + +E R++A + ++ +KAF++G D + + Sbjct: 785 RNVVGREIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVASL 844 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGY 441 + + QV+ DQR+ K M L Y Sbjct: 845 VYKIPVEQVSPDQRSHVKAMSYGLAY 870 >gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta] gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta] Length = 2037 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 38/229 (16%) Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + KL+T +F + G + +VL ++K+ N R+ SR + KLNT + Sbjct: 1665 VRKLETKIFEQHGSRFNLGSSQAVAKVLGLHRKI--------NGRVTTSRQVLEKLNTPI 1716 Query: 296 EAMNSDGRLRGTLQFLGASR-TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 M LG + G + + P + R H Q IT+ T S Sbjct: 1717 SHM-----------ILGYRKLAGLLAKSIQPLLKCCQADRIH---GQSITYTATGRISMA 1762 Query: 355 DP----------LQIISDCVR-SC----VIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +P +Q+ SD V SC ++ E + L+ AD +E R+LA ++ ++ L Sbjct: 1763 EPNLQNVAKEFCIQVGSDAVNISCRLPFMLKDEDRCLLSADFCQLEMRILAHLSQDKGLL 1822 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 K + +DL++ A + ++V+++ R K + + Y G ++ Sbjct: 1823 KVMNSSQDLFIAIAAHWNKIEESEVSQNLRNSTKQVCYGIVYGMGMRSL 1871 >gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] Length = 585 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 109/493 (22%), Positives = 194/493 (39%), Gaps = 114/493 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 FID ET +P D+ LF G + P+ + D + P+++K+ + Sbjct: 26 FIDTET-TPKDIR--------------LFQVGLESGPIYVIDFLFVKRAPELIKDIIAKK 70 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAV-----GEALKL 118 V HN ++ LK DI + T+V A+ GL +L +V GE++ Sbjct: 71 GVA--GHNLKYD---LKYLMKYDIHPYTTFDTMVGAQLIGLNRVSLASVYNHFTGESI-- 123 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 + KE + + E E ++F Y DV V R ++++L Sbjct: 124 ------DKKEQFSNWSSKELTES-------------QIF--YAAKDVEVLRLLYEKLKNE 162 Query: 176 ---EPL------SSKEQELWYLDQT--INDRGYCVDVA-LAHTLNQIVDVERTKLDQELE 223 EP S+ +++ L+ T I + G+ ++A + HT I E + ++L+ Sbjct: 163 LNKEPTIIEILQKSRVAKVFGLESTYAIIEMGFVQELAKIEHTGIGIDTKEIETMKKQLQ 222 Query: 224 SLTYGLVSSSRCLEKL------KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277 T L + ++ K FLE L++ L T +++ + L + + Sbjct: 223 KKTQELAMNFYIKYRIDISSPKKVGEFLENHLNI-SLPRTDKDNIITDDSVLI-EHLDYE 280 Query: 278 NNRMRASRSAVL---KLNTLVEAM------NSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 N + + S+VL KL+ L E + N + R+ +GA TGR S QN Sbjct: 281 NEKAKDVISSVLEFRKLHKLQEKLSEILEYNENNRIHPEFWQIGAV-TGRMSSSRPNVQN 339 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 +PR +RS + A +G V+AD + IE R+ Sbjct: 340 IPRE-------------------------------LRSILKAKDGYVFVIADFSQIELRI 368 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A ++ + GEDL+ T + + +TK++R K L Y K+ Sbjct: 369 AAEYVKDEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKSL 428 Query: 449 QKMA-STTGLNLN 460 A ++ G++++ Sbjct: 429 SLYARNSYGIDMS 441 >gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 872 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 +R H Q++T +++P+ LQ I R+ + S +V AD + IE Sbjct: 596 NRVHSNFKQMVTATGRISSTEPN-LQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIE 654 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ +++F ED+++ T + F V +VT + R K + + Y Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIY 710 >gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026] Length = 886 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 99/454 (21%), Positives = 167/454 (36%), Gaps = 122/454 (26%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A LNQ+ + KL QELE Y L ++L LF + GL T+T Sbjct: 507 ASVLNQLGNDFAVKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 565 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL K +P ++ + R A + L++ + DGR+ T + TG Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLDCIQPDGRIH-TRYLQTLTTTG 623 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + EE QI ++ V +++ + Sbjct: 624 RLSSVDPNLQNIPTKT---EEGKQI---------------------RKAFVPSTKDGYIF 659 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVME 436 D + +E RVLA ++G++ +AF++G D++ T + F++ +P +VT R K + Sbjct: 660 SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVN 719 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y S GL+ N Sbjct: 720 FGIVYG---------ISDYGLSKN------------------------------------ 734 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDK 555 +G + ++ K + ++ N + +A ++ ENG A I +RR +P ++ K Sbjct: 735 --LGISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKN-- 790 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 N RS+ T + +Q + DI+ M+ Sbjct: 791 ------------------FNVRSFAERTA-------------INSPIQGSAADIIKIAMI 819 Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFN 643 N K +VL VHDE++ + P DE N Sbjct: 820 NMQKKLDELHLKTKMVLQVHDELIFDVP-KDELN 852 >gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 872 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 +R H Q++T +++P+ LQ I R+ + ++ +V AD + IE Sbjct: 596 NRVHSNFKQMVTSTGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 654 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ +++F ED+++ T + F V +VT + R K + + Y Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIY 710 >gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] Length = 879 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A EG + D + IE R+LA + ++ L AF ED++V T F + Sbjct: 649 KSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHVRTAMMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL A L K+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEASLAKS 741 >gi|333025332|ref|ZP_08453396.1| putative DNA polymerase I [Streptomyces sp. Tu6071] gi|332745184|gb|EGJ75625.1| putative DNA polymerase I [Streptomyces sp. Tu6071] Length = 555 Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 I VR V+A G +LVVAD A +E R+LA +AG+ L +DLY R+F Sbjct: 315 IPKVVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 372 >gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246] Length = 209 Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 352 SDPDPLQIISDCV-RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 SDP+ Q+ R C A LV AD + E R+ A +A E+ + A+ G DL+ Sbjct: 125 SDPNLQQVPRGSAHRRCFTARPEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLHA 184 Query: 411 TTYARSFNVAPAQVTKDQRAIGK 433 T AR N VTKD R + K Sbjct: 185 LTAARVLNKDEDAVTKDDRQLAK 207 >gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205] gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205] Length = 923 Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R H +Q IT +SDP+ LQ I +R C I G AD + I Sbjct: 646 RTGHIHASFNQAITATGRLSSSDPN-LQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQI 704 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ + ++AF G D++ T A+ ++ +VT QR K + Y Sbjct: 705 ELRIMAHLSQDPNMVEAFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIY 761 >gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74] Length = 565 Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 I VR V+A G +LVVAD A +E R+LA +AG+ L +DLY R+F Sbjct: 325 IPKVVRRAVVADPGWRLVVADAAQMEPRILAAVAGDAGLLDVAAKADDLYAAVSDRAF 382 >gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] Length = 985 Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust. Identities = 70/306 (22%), Positives = 115/306 (37%), Gaps = 76/306 (24%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 742 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 801 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 + + R K + + Y G AF L S P E+A + R Sbjct: 802 MPSEVRRRAKAINFGIIY--GISAF---------------GLANQLSIPR--EEAGQYIR 842 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I+D T KA+ ++H V ++ +R Sbjct: 843 TYFERFP--GIKDYMEAT------KAFAREHGYVETIFG-------------------RR 875 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 P + P R+ N R+ +N + G + I + Sbjct: 876 AHYPDIRASN---------PQIRAF------NERAAINAPIQ---------GSAADIIRR 911 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWAKG 660 A+ R E + K ++L VHDE++ E P+ + E S++ H+M + P+ + Sbjct: 912 AMIR---MEDALAKEKLAARMLLQVHDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLA 968 Query: 661 LPLKAE 666 +PL + Sbjct: 969 VPLHVD 974 >gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 849 Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust. Identities = 71/318 (22%), Positives = 110/318 (34%), Gaps = 89/318 (27%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P R H +T +S P+ LQ I + +R IA +G K++ AD + Sbjct: 571 PLDGRIHTNFSTTVTATGRLSSSSPN-LQNIPIRSKEGNLIRQTFIAPKGYKIISADYSQ 629 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA +A +AF G+D++ T + F V + D++ K + G Sbjct: 630 IELRLLAHVANVTAFKEAFANGKDIHGITAGQVFGVQK-DMEVDEQLRRKAKSINFGIMY 688 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G F +A G+ + E+A + + +PE I Sbjct: 689 GISQF-GLAKRLGITI----------------EEAAEYINYYFSCYPE-------IKVYM 724 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 E+V RQ H V L+ Sbjct: 725 EKVVSTARQ-HGYVETLF------------------------------------------ 741 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM---NATKA 620 GR +D+ N YL RQ L Q + DI+ M+ + KA Sbjct: 742 -GRRCFVKDINNTIPYL----RQFAERAAINAPL-----QGTAADIIKCAMIQLFDQLKA 791 Query: 621 GYDIVLTVHDEIVCETPD 638 G I+L VHDE++ E + Sbjct: 792 G-KIILQVHDELLVEVEN 808 >gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp. SA3_actG] Length = 555 Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 I VR V+A G +LVVAD A +E R+LA +AG+ L +DLY R+F Sbjct: 315 IPKVVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 372 >gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059] Length = 880 Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057] Length = 880 Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERENLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K] gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K] Length = 1072 Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 22/173 (12%) Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGR-LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 ++ M+ R++ K L+ +N R L G+ G + T R S QNLP + Sbjct: 698 YHASMQTKRNSFTK--KLLNMINKQKRTLHGSFSETG-TETSRLSSSNPNLQNLP----A 750 Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 H TSD + RS V E L+ +D + +E R++ + Sbjct: 751 H--------------TSDVNKFDYKHPIKRSFVSRFENGVLLGSDYSALEMRIIGLFTKD 796 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 L++F GED++ T + +N +VTK++R K + L + +F Sbjct: 797 PDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESPFSF 849 >gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b] Length = 190 Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380 P+ + + R H +Q + ++ P+ I + +R+ IA E LV AD Sbjct: 58 PKLVDKNYRLHTTFNQDVVSTGRLSSTHPNLQNIPIRSTLGKKIRNAFIADEDNILVSAD 117 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + E R+ A MAG++ + F D++ T + + + QVT +QR KV+ + Sbjct: 118 YSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVTSNQRRNAKVINFGVL 177 Query: 441 Y 441 Y Sbjct: 178 Y 178 >gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330] Length = 880 Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 878 Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ V + EG ++ AD + IE R+LA ++ + ++AF+ GED++ T F V+ ++ Sbjct: 640 KAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEM 699 Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448 T D R K + + Y G AF Sbjct: 700 TSDLRRSAKAINFGIIY--GMSAF 721 >gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] Length = 880 Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243] gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243] Length = 875 Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 12/130 (9%) Query: 329 LPR----PSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVV 378 LPR R H ++ +T +S+P+ I +R C + EG + Sbjct: 591 LPRMRADDGRVHTSFNETVTTTGRLSSSEPNLQNIPVRTEFGRQIRECFVPLEEGHAFLS 650 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++ ++ + AF +G D + T +R F + V+ + R+ K + Sbjct: 651 ADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVSPELRSRAKAVNFG 710 Query: 439 LGYQGGAKAF 448 + Y G +AF Sbjct: 711 IVY--GQQAF 718 >gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] Length = 872 Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLAGIE 385 +R H Q++T +++P+ LQ I R+ + ++ +V AD + IE Sbjct: 596 NRVHSNFKQMVTSTGRISSTEPN-LQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIE 654 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ +++F ED+++ T + F V +VT + R K + + Y Sbjct: 655 LRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIY 710 >gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] Length = 878 Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ V + EG ++ AD + IE R+LA ++ + ++AF+ GED++ T F V+ ++ Sbjct: 640 KAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEM 699 Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448 T D R K + + Y G AF Sbjct: 700 TSDLRRSAKAINFGIIY--GMSAF 721 >gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 24/111 (21%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT----------- 412 +R IA +G KL+VAD +E RVLA M + + AF G D + T Sbjct: 592 IRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVITMFPHIQEE 651 Query: 413 ---------YARSFNVAPAQVTKD----QRAIGKVMELALGYQGGAKAFQK 450 + +S APA + KD +R KV+ ++ Y A F K Sbjct: 652 IDKGELLIEWDKSKGKAPAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAK 702 >gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 24/111 (21%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT----------- 412 +R IA +G KL+VAD +E RVLA M + + AF G D + T Sbjct: 592 IRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVITMFPHIQEE 651 Query: 413 ---------YARSFNVAPAQVTKD----QRAIGKVMELALGYQGGAKAFQK 450 + +S APA + KD +R KV+ ++ Y A F K Sbjct: 652 IDKGELLIEWDKSKGKAPAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAK 702 >gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel] gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel] Length = 875 Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R I +G KL+ AD + IE R+L+ +A +AF +D++ T + FN+ + Sbjct: 638 IRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDDIHTQTACQIFNLPKDK 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 +T R K + + Y G AF Sbjct: 698 LTSKHRRKAKAINFGIIY--GISAF 720 >gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] Length = 880 Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405] Length = 880 Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1] gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1] Length = 956 Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G L+ AD + IE R+LA +A + +AF G D++ T A+ + A Sbjct: 719 IRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGLDEAT 778 Query: 424 VTKDQRAIGKVMELALGY 441 V +QR K + + Y Sbjct: 779 VDANQRRAAKTVNFGVLY 796 >gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53] gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53] Length = 936 Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A+ G +V D + IE R+LA +AG +AF G D++ T + F+V Q Sbjct: 696 IREAFVAAPGNVIVSLDYSQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQ 755 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 756 MTPDIRRQAKAINFGVIY 773 >gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087] Length = 880 Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium rectale DSM 17629] Length = 724 Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 12/97 (12%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R A +G K V D + IE RVL++++G++ +A+ G+DLY ++ + V Sbjct: 460 IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYED 519 Query: 421 -----PAQVT----KDQRAIGKVMELALGYQGGAKAF 448 P K +R K + L + Y+ GAKA Sbjct: 520 CREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAI 556 >gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185] gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185] Length = 891 Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVY 729 >gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115] Length = 880 Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 724 Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 12/97 (12%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R A +G K V D + IE RVL++++G++ +A+ G+DLY ++ + V Sbjct: 460 IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYED 519 Query: 421 -----PAQVT----KDQRAIGKVMELALGYQGGAKAF 448 P K +R K + L + Y+ GAKA Sbjct: 520 CREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAI 556 >gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3] gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3] Length = 891 Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171] gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171] Length = 877 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1] gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1] Length = 875 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 + H +Q +T ++DP+ P+++ +R + SE G + +D + +E Sbjct: 599 GKVHTRFNQALTQTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPSEEGWLIFSSDYSQVEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ ++AF G D++ T F+V +VT + R K + + Y Sbjct: 659 RVLAHISGDEKLIEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNFGIVY 713 >gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 891 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVY 729 >gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] Length = 891 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L] gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L] Length = 891 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676] gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676] Length = 891 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI] gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI] Length = 877 Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] Length = 876 Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 36/72 (50%) Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A G ++ AD + IE RVLA + ++ +KAF G D++ T + F V P +V R Sbjct: 643 AEPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMR 702 Query: 430 AIGKVMELALGY 441 K + + Y Sbjct: 703 RQAKAVNFGIVY 714 >gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 877 Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550] gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550] Length = 891 Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134] gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134] Length = 877 Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 877 Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160] gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1] gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408] Length = 880 Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 891 Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 891 Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15] gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15] Length = 891 Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] Length = 865 Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + SE G L AD + IE RV+A M+ ++ ++AF D++ T + F VAP Sbjct: 625 IRKAFVPSEPGWSLYAADYSQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSVFGVAPN 684 Query: 423 QVTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 685 DVTGNMRRQAKAVNFGIIY 703 >gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] Length = 866 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +++DG + T + TGR S QN+P E+ ++ Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + EG L+ AD + IE RVLA ++G++ + AF D++ T Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + F V +VT R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] Length = 866 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +++DG + T + TGR S QN+P E+ ++ Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + EG L+ AD + IE RVLA ++G++ + AF D++ T Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + F V +VT R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42] gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42] Length = 891 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] Length = 881 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ ++AF G D++ +T R FN+ P VT + R Sbjct: 649 EDSVLLSSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRR 708 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 709 NAKAVNFGVVY 719 >gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 891 Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49] Length = 880 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020] Length = 877 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 891 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W] gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W] Length = 891 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] Length = 866 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +++DG + T + TGR S QN+P E+ ++ Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + EG L+ AD + IE RVLA ++G++ + AF D++ T Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + F V +VT R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli] gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 44.3 bits (103), Expect = 0.076, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 I E +V AD + IE R++A ++ ++ L AF G+D++ T A F + VT +Q Sbjct: 2 IGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61 Query: 429 RAIGKVMELALGYQGGAKAF 448 R K + L Y G AF Sbjct: 62 RRSAKAINFGLIY--GMSAF 79 >gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740] gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes] Length = 898 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 8/137 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IASEG L+ D + IE R+LA + + + AF+ G D++ T + F A Sbjct: 664 IRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKKIFGEREA- 722 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 K R I K + L Y G++ K++ T ++ + + A + ++F + Sbjct: 723 --KAHRGIAKTINFGLIYGMGSR---KLSETLRISPKEAKGYIDSYFA--SFPTVKSFLK 775 Query: 484 WMQENHPEHAIEDLFIG 500 +E EH + +G Sbjct: 776 AQEEFALEHGYTETLLG 792 >gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1] gi|737486|prf||1922368A DNA polymerase I Length = 921 Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +G L+ AD + IE R+LA +A + +AF G D++ T A+ + A Sbjct: 684 IRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGLDEAT 743 Query: 424 VTKDQRAIGKVMELALGY 441 V +QR K + + Y Sbjct: 744 VDANQRRAAKTVNFGVLY 761 >gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150] Length = 880 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] Length = 842 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS--FNVAP 421 +R I+ EG LV D + IE RVLA ++ ++ + A++ +DL+ T AR F Sbjct: 662 IRKGFISEEGWSLVSFDYSQIELRVLAELSKDENLVLAYKKDKDLHDLT-ARKIFFKADE 720 Query: 422 AQVTKDQRAIGKVMELALGY 441 QVT+++R+I KV+ ++ Y Sbjct: 721 EQVTREERSIAKVINFSILY 740 >gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201] gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201] gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 891 Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] Length = 891 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] Length = 891 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] Length = 882 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q +T +++P+ P ++ + +R + EG V AD + IE RV Sbjct: 608 RIHGKFNQTVTATGRISSTEPNLQNIPARVELGRLIRKVFVPEEGYVFVDADYSQIELRV 667 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 LA +G+ ++A+ +D++ T ++ F+ +VT QR K + + Y Sbjct: 668 LAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTDLQRRNAKAVNFGIVY 720 >gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135] gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135] Length = 919 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 43/82 (52%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +G + AD + IE +LA ++ ++ ++AF+ +D+++ T ++ F V + Sbjct: 679 IREAFKPEKGNIFISADYSQIELVILAHLSEDESLIEAFKNKKDIHIKTASQLFKVDEEK 738 Query: 424 VTKDQRAIGKVMELALGYQGGA 445 VT R I K + + Y+ A Sbjct: 739 VTSSMRRIAKSINFGIIYRMSA 760 >gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239] gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239] Length = 866 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +++DG + T + TGR S QN+P E+ ++ Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + EG L+ AD + IE RVLA ++G++ + AF D++ T Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + F V +VT R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264] gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264] Length = 877 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488] gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum] gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488] Length = 877 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124] gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124] Length = 866 Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +++DG + T + TGR S QN+P E+ ++ Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + EG L+ AD + IE RVLA ++G++ + AF D++ T Sbjct: 631 --------------IPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + F V +VT R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] Length = 877 Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842] gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842] Length = 877 Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579] Length = 891 Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 891 Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36] gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains, putative [Streptococcus sanguinis SK36] Length = 880 Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames] gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus anthracis str. A2012] gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W] gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820] gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684] gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248] gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066] gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055] gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America USA6153] gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B] gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94] gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames] gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W] gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820] gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684] gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248] Length = 877 Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] Length = 586 Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + SR + E QI + P+ LQ I ++S A +G ++AD + IE R+ A Sbjct: 319 KNSRVYGEFKQIGASTGRMSSYKPN-LQNIPKNLKSIFRAPDGYLFIIADYSQIELRIAA 377 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ +KAF+ +DL+ T + ++TK++R + K + L Y K+ + Sbjct: 378 EYTKDKSMIKAFQEKKDLHKLTASVITGKDYQEITKEERNLAKAINFGLIYGISPKSLVE 437 Query: 451 MA 452 A Sbjct: 438 YA 439 >gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H] gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H] Length = 1861 Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 6/165 (3%) Query: 326 PQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAG 383 PQ++ + ++ H +Q+ T + P+ QI +R I + ++AD Sbjct: 1587 PQHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPQKDNIFIIADFKQ 1646 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE ++ A + + LKA+ DL+ T + A V K+ R I K + L Y Sbjct: 1647 IELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKPIADVNKEDRHIAKAINFGLIYGM 1706 Query: 444 GAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 + A+T LN+N L NS E + + RW + Sbjct: 1707 NYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHY---KGIYRWHNQ 1748 >gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] Length = 866 Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +++DG + T + TGR S QN+P E+ ++ Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + EG L+ AD + IE RVLA ++G++ + AF D++ T Sbjct: 631 --------------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + F V +VT R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200] gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200] Length = 891 Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101] gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101] Length = 866 Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 25/151 (16%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L +++DG + T + TGR S QN+P E+ ++ Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF---------- 630 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + EG L+ AD + IE RVLA ++G++ + AF D++ T Sbjct: 631 --------------IPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 + F V +VT R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 891 Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4] gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4] Length = 875 Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q +T ++DP+ P+++ +R I SE G K++ AD + IE Sbjct: 599 SKIHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFIPSEEGWKILAADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F+V+ VT R K + + Y Sbjct: 659 RVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEEDVTSMMRRSAKAVNFGIVY 713 >gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis] Length = 158 Score = 43.9 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 8/133 (6%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A EG ++ AD + IE R++A ++ +KAF+ +DL+ T + + Sbjct: 4 LRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKNYEE 63 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT-GLNLNTFAHLVKTNSAPEE-WEDAENF 481 +TK++R + K + L Y K+ AS+ G+N+ L + N + +E ++ Sbjct: 64 ITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINIT----LPEANKFHKNFFEFYKDI 119 Query: 482 CRWMQE--NHPEH 492 +W +E NH H Sbjct: 120 KKWHEETKNHLNH 132 >gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159] gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159] Length = 878 Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P VT + R K Sbjct: 650 LLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKA 709 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHA 493 + + Y G F +A+ G++ + ++T E + +N+ R ++E + Sbjct: 710 VNFGVVY--GISDF-GLANNLGISRKAAKNYIETYF--ERYPGIKNYMDRVVREARDKGY 764 Query: 494 IEDLF 498 +E LF Sbjct: 765 VETLF 769 >gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] Length = 886 Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 39/234 (16%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTET---TCQRVLSSNKKLTP 271 +L QE+ + G V + ++L LF ++ LHL T+T T VL + P Sbjct: 521 ELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAVDVLERLAPIAP 579 Query: 272 QAIQVFNNRM--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 ++ + R + + V+ L + A DGR+ T ++TGR S QN+ Sbjct: 580 IVAKILDYRQITKLQSTYVIGLQDYIMA---DGRIH-TRYLQDLTQTGRLSSVDPNLQNI 635 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARV 388 P L+Q +R S + L+ +D + IE RV Sbjct: 636 PI------RLEQ-------------------GRLIRKAFTPSHDDAVLLSSDYSQIELRV 670 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 LA ++G++ + AF+ G D++ +T R F + P VT + R K + + Y Sbjct: 671 LAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVY 724 >gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] Length = 887 Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 27/152 (17%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ ++ DGR+ T AS TGR S QN+P + + Sbjct: 595 IEGLIKTVHDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEAGRR------------ 641 Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +RS +G + L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 642 -------------IRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDLH 688 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +R F+V VT + R K M L Y Sbjct: 689 NFVGSRVFDVPIDDVTPELRRRVKAMSYGLVY 720 >gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234] gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234] Length = 1040 Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA+ G KLV AD + IE RVLA +A +AF G D++ T + F V Sbjct: 797 IRTAFIATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEG 856 Query: 421 -PAQVTKDQRAI 431 P+++ + +AI Sbjct: 857 MPSEIRRRAKAI 868 >gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1] gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1] Length = 978 Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA+ G KL+ AD + IE RVLA +A KAF G D++ T + F V Sbjct: 734 IRTAFIAAPGYKLISADYSQIELRVLAHVADIPELKKAFAEGMDIHAMTASEMFGVPVEG 793 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 794 MPGEVRRRAKAI 805 >gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] Length = 964 Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IAS G L+ AD + IE R+LA + +AF++G D++ T + F V Sbjct: 721 IRQAFIASPGHVLISADYSQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEG 780 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + + R K + + Y G AF +A+ G++ +KT Sbjct: 781 MPSETRRRAKAINFGIIY--GISAF-GLAAQLGIDQGEAGAYIKT 822 >gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] Length = 879 Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC IA +G + D + IE R+LA + ++ L+AF+ ED++ T F + Sbjct: 649 KSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEAFKNDEDIHARTAIMIF----GEN 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL A L KT Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEASLAKT 741 >gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7] gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7] Length = 2016 Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 2/148 (1%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVL 389 + ++ H +Q+ T + P+ QI +R I ++ ++AD IE ++ Sbjct: 1748 KTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPNDNNIFIIADFKQIELKIA 1807 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A + ++ LKA+ DL+ T + + K+ R I K + L Y + Sbjct: 1808 AEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLK 1867 Query: 450 KMAST-TGLNLNTFAHLVKTNSAPEEWE 476 A+T GLN++ L NS E ++ Sbjct: 1868 NYANTYYGLNMSLDQCLYFYNSFFEHYK 1895 >gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 921 Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 31/151 (20%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L+ +N + GR+ + +GA +TGR S QN+P + T I Sbjct: 634 DALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIP---------------IRTEI 677 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + +R+ IA +G L+ AD + IE R+ A +A E+ L+AF ED++ Sbjct: 678 GRE----------IRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFREKEDIHA 727 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + F V ++ RA K + A+ Y Sbjct: 728 LTAKQLFG----HVDRESRARAKTINFAILY 754 >gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] Length = 889 Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG L+ D + IE R+LA + + ++AF D+++ T + F AQ Sbjct: 657 IREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSAMIEAFHKEADIHLETAKKIFGEELAQ 716 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++R++ K + L Y GA+ K++ T +N Sbjct: 717 ---EKRSVAKSINFGLIYGMGAR---KLSETLQIN 745 >gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13] gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13] Length = 866 Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 25/148 (16%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T + TGR S QN+P E+ ++ Sbjct: 585 VIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF------------- 630 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + EG L+ AD + IE RVLA ++G++ + AF D++ T + Sbjct: 631 -----------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEV 679 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGG 444 F V +VT R+ K + + Y G Sbjct: 680 FKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92] gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92] Length = 879 Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR A EG V D + IE R+LA + ++ LKAFE ED++ T F A Q Sbjct: 648 VRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALLKAFENDEDIHARTAISIFGSADGQ 707 Query: 424 VTKDQRAIGKVMELALGYQGGA 445 RA+ K + L Y G+ Sbjct: 708 ----NRAVAKSINFGLIYGMGS 725 >gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025] gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025] Length = 878 Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P VT + R K Sbjct: 650 LLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKA 709 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC-RWMQENHPEHA 493 + + Y G F +A+ G++ + ++T E + +N+ R ++E + Sbjct: 710 VNFGVVY--GISDF-GLANNLGISRKAAKNYIETYF--ERYPGIKNYMDRVVREARDKGY 764 Query: 494 IEDLF 498 +E LF Sbjct: 765 VETLF 769 >gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621] gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621] Length = 891 Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A + ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729 >gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21] gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21] Length = 928 Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust. Identities = 59/297 (19%), Positives = 124/297 (41%), Gaps = 27/297 (9%) Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +Y D +T ++ + EP+ K + + + V+ L L VD+ER + Sbjct: 495 DYAAEDADITLQLKEIFEPMLIKVEA--------DKLAHEVEFPLVPVL---VDMERVGV 543 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 ++++L+ ++ ++ L+ ++ + G+ + VL +L P+A + Sbjct: 544 RIDVKALSDFSLAIQNEVQILEARIYEKAGVPFNIASPKQLGEVLFDKLQLDPKAKKTKT 603 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + ++ L N ++ L++ + P + R H Sbjct: 604 GQYQTGEDVLMAL------ANKSDIVQDILEYRQLQKLRSTYVDALPQLINTKTGRVHTS 657 Query: 339 LDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVV-ADLAGIEARVLAW 391 +Q + +++P+ LQ I VR IA + + +++ AD + IE R++A Sbjct: 658 YNQAVAATGRLSSNNPN-LQNIPIRTERGREVRKAFIARDDEHVILSADYSQIELRLIAE 716 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 ++ + L AF G D++ T A+ + V +VT +QR K + + Y G AF Sbjct: 717 ISKDANMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKAVNFGIIY--GQSAF 771 >gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium] Length = 944 Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 27/148 (18%) Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DGRL + TGR S QN+P + E+ + +PT D I+ Sbjct: 668 DGRLHTSYN-QAVVATGRLSSTNPNLQNIPIKTAKGREIRK--AFIPTD-----DDFVIL 719 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 S AD + IE R++A + ++ ++AF G D++ T ++ + + Sbjct: 720 S-----------------ADYSQIELRLIAAFSQDETMMEAFNNGTDIHTATASKIYKID 762 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAF 448 +VT D R + K A+ Y G+ AF Sbjct: 763 IQEVTADMRRMAKTANFAILY--GSSAF 788 >gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] Length = 866 Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 25/148 (16%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T + TGR S QN+P E+ ++ Sbjct: 585 VIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF------------- 630 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + EG L+ AD + IE RVLA ++G++ + AF D++ T + Sbjct: 631 -----------IPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEV 679 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGG 444 F V +VT R+ K + + Y G Sbjct: 680 FKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH] gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH] Length = 905 Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 40/82 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R EG + AD + IE +LA + + ++AF+ ED+++ T ++ F V + Sbjct: 665 IREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEAFKNKEDIHIKTASQLFKVDTDK 724 Query: 424 VTKDQRAIGKVMELALGYQGGA 445 VT R + K + + Y A Sbjct: 725 VTPSMRRVAKSINFGIIYNMSA 746 >gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] Length = 871 Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q IT +++P+ P+++ + +R + EG + AD + IE R Sbjct: 596 GRIHGTFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPQEGYVFIDADYSQIELR 655 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +LA +G+ ++A+ +D++ T ++ F +VT QR K + + Y Sbjct: 656 ILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTDLQRRNAKAVNFGIVY 709 >gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1] gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1] Length = 891 Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2] gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2] Length = 608 Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 12/97 (12%) Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 VR C +A G+ +V D E RVLA +A ++ ++AFE DL+ T A Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVT---------A 424 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 R +GK+ Y GGA K+A+ G+ Sbjct: 425 DAAGMDRKVGKMANFLTVYGGGAG---KLATNAGITF 458 >gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271] gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271] Length = 891 Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVDAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 856 Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + AD + IE RVLA ++G++ +AFE G D++ T A F V +V+ + R + K++ Sbjct: 630 FIAADYSQIELRVLAHISGDKKLCEAFERGRDIHAETAAWIFGVDTEKVSPELRRMAKMI 689 Query: 436 ELALGY 441 L Y Sbjct: 690 NFGLLY 695 >gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] Length = 877 Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A + ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 715 >gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 899 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 39/234 (16%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTET---TCQRVLSSNKKLTP 271 +L QE+ + G V + ++L LF ++ LHL T+T T VL + P Sbjct: 534 ELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAVDVLERLAPIAP 592 Query: 272 QAIQVFNNRM--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 ++ + R + + V+ L + A DGR+ T ++TGR S QN+ Sbjct: 593 IVAKILDYRQITKLQSTYVIGLQDYIMA---DGRIH-TRYLQDLTQTGRLSSVDPNLQNI 648 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARV 388 P L+Q +R S + L+ +D + IE RV Sbjct: 649 PI------RLEQ-------------------GRLIRKAFTPSHDDAVLLSSDYSQIELRV 683 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 LA ++G++ + AF+ G D++ +T R F + P VT + R K + + Y Sbjct: 684 LAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVY 737 >gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus] Length = 172 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 DP+ LQ I +R ++ ++VAD + IE R+ A +Q + AF+ G DL+ T Sbjct: 1 DPN-LQNIPTSLRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLDLHRFT 59 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +TK++R + K + L Y ++ + AS++ Sbjct: 60 ASLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSS 102 >gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] Length = 886 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 39/234 (16%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTET---TCQRVLSSNKKLTP 271 +L QE+ + G V + ++L LF ++ LHL T+T T VL + P Sbjct: 521 ELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAVDVLERLAPIAP 579 Query: 272 QAIQVFNNRM--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 ++ + R + + V+ L + A DGR+ T ++TGR S QN+ Sbjct: 580 IVAKILDYRQITKLQSTYVIGLQDYIMA---DGRIH-TRYLQDLTQTGRLSSVDPNLQNI 635 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARV 388 P L+Q +R S + L+ +D + IE RV Sbjct: 636 PI------RLEQ-------------------GRLIRKAFTPSHDDAVLLSSDYSQIELRV 670 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 LA ++G++ + AF+ G D++ +T R F + P VT + R K + + Y Sbjct: 671 LAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVY 724 >gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334] gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334] Length = 881 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + S EG ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F + + Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P QVT D R K + Y Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719 >gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W] gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II] Length = 881 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + S EG ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F + + Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P QVT D R K + Y Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719 >gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273] gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272] gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272] gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273] Length = 891 Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A + ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729 >gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 881 Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + S EG ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F + + Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P QVT D R K + Y Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719 >gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 881 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + S EG ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F + + Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P QVT D R K + Y Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719 >gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] Length = 881 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + S EG ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F + + Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P QVT D R K + Y Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719 >gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26] gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26] Length = 891 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187] gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187] Length = 877 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1] gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1] Length = 891 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193] gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193] Length = 935 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 39/78 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + +G L+ D + IE R+LA +AG AF G+D++ T + F+V + Sbjct: 695 IREAFVPEQGNVLLSLDYSQIELRILAHVAGIDALKAAFAAGQDIHAMTASEMFDVPMEE 754 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 755 MTADIRRQAKAINFGVIY 772 >gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] Length = 881 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + S EG ++ +D + IE RVL+ ++G++ +AF+ G D++ T + F + + Sbjct: 639 IIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSS 698 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P QVT D R K + Y Sbjct: 699 PDQVTPDMRRQAKATNFGIVY 719 >gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102] gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102] Length = 877 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017] gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017] Length = 957 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 26/163 (15%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q +T +S+P+ P++ S +R+ I L+ AD + IE R+ Sbjct: 666 RIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRAAFIPESSWILMAADYSQIELRI 725 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ E L+A+ G+D++ T + Q+ ++R + K++ + Y G F Sbjct: 726 LAHLSQEPRLLEAYRNGQDVHTLT--AQLLLEKDQIAAEERRLAKIINFGVIYGMGPHRF 783 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 + A ++ +A++F + + +PE Sbjct: 784 AREAGV-------------------KYSEAKDFIQRFYDRYPE 807 >gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] Length = 886 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 34/245 (13%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A LNQ+ + KL QELE Y L ++L LF + GL T+T Sbjct: 507 ASVLNQLGNDFAVKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYS 565 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL K +P ++ + R A + L++ + DGR+ T + TG Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLDCIQPDGRIH-TRYLQTLTTTG 623 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377 R S QN+P + EE QI ++ V +++ + Sbjct: 624 RLSSVDPNLQNIPTKT---EEGKQI---------------------RKAFVPSTKDGYIF 659 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVME 436 D + +E RVLA ++G++ +AF++G D++ T + F++ +P +VT R K + Sbjct: 660 SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVN 719 Query: 437 LALGY 441 + Y Sbjct: 720 FGIVY 724 >gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293] gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293] Length = 891 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1] gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1] Length = 864 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 37/69 (53%) Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G L+ D + IE RVLA M+ + ++AF +GED++ T + F V P +VT R Sbjct: 635 GHVLLSGDYSQIELRVLAHMSQDPGLIEAFVSGEDIHRRTASEVFGVPPEEVTPLLRDKA 694 Query: 433 KVMELALGY 441 K + + Y Sbjct: 695 KAVNFGIIY 703 >gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 891 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241] gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241] Length = 891 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] Length = 976 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 73/309 (23%), Positives = 117/309 (37%), Gaps = 80/309 (25%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ IA G KLV AD + IE RVLA +A +AF G D++ T + F V Sbjct: 733 IRTAFIAEPGNKLVSADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 792 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 + + R K + + Y G AF L S P E+A + R Sbjct: 793 MPSEVRRRAKAINFGIIY--GISAF---------------GLANQLSIPR--EEAGQYIR 833 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E P I+D T KA+ +++ V ++ +R Sbjct: 834 TYFERFP--GIKDYMEAT------KAFARENGYVETIFG-------------------RR 866 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 P + P R+ N R+ +N + G + I + Sbjct: 867 AHYPDIRASN---------PQVRAF------NERAAINAPIQ---------GSAADIIRR 902 Query: 604 AVSR--DILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWA 658 A+ R D LAE + A ++L VHDE++ E PD + E ++ H+M + P+ + Sbjct: 903 AMIRMEDALAEQNLAAR-----MLLQVHDELIFEVPDNEVEKTIPVVRHIMENAAMPAVS 957 Query: 659 KGLPLKAEG 667 +PL + Sbjct: 958 LAVPLHVDA 966 >gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31] gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31] Length = 973 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R +A+ GK L+ AD + IE R+LA + KAF+ G D++ T + FNV Sbjct: 730 IRKAFVAAPGKVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFNVPIEG 789 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 790 MPSEVRRRAKAI 801 >gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97] gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97] Length = 879 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G D + IE R+LA + ++ L AF ED++ T F + Sbjct: 649 KSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNAFTNDEDIHARTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL AHL K+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 741 >gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum] gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] Length = 856 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 44/92 (47%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R ++ +G LV D + IE R++A ++ E + AF+ GED++ T + F V + Sbjct: 617 IRRAFVSEDGYFLVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEE 676 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 V R+ K + + Y + + S T Sbjct: 677 VDDLLRSRAKAVNFGIIYGISSFGLSETVSIT 708 >gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7] gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7] Length = 880 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 6/122 (4%) Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV-ADLA 382 + + + H +Q +T +++P+ I + +R + + +++ AD + Sbjct: 600 IDKDGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFVPEDENSIILSADYS 659 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA +A ++ + AF D++ T + F V QVTK QR+ K + + Y Sbjct: 660 QIELRVLAHIADDENLIDAFLNHSDIHTKTASEVFKVPIDQVTKLQRSNAKAVNFGIVYG 719 Query: 443 GG 444 G Sbjct: 720 IG 721 >gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342] gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342] Length = 891 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni] gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni] Length = 234 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G + D + IE R+LA + ++ L AF ED++ T F + Sbjct: 92 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 147 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL AHL K+ Sbjct: 148 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEAHLAKS 184 >gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506] gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506] Length = 981 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R IA+ G KLV AD + IE R+LA +A +AF+ G D++ T + F V Sbjct: 738 IRKAFIAAPGHKLVSADYSQIELRLLAEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEG 797 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 798 MPGEVRRRAKAI 809 >gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico] gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia] Length = 853 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +A EG KLV AD + +E +++A +AG Q AF G+D+++ T + F Sbjct: 615 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG 669 >gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii] Length = 876 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 6/114 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVV-ADLAGIEAR 387 + H +Q +T ++DP+ P+++ +R + SE ++ AD + IE R Sbjct: 601 KVHTRFNQALTQTGRLSSADPNLQNIPIRLEEGRKIRQAFVPSEKDWVIFSADYSQIELR 660 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA ++G+Q ++AF D++ T F+V +VT + R K + + Y Sbjct: 661 VLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKEEVTSNMRRQAKAVNFGIVY 714 >gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] Length = 864 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +A EG KLV AD + +E +++A +AG Q AF G+D+++ T + F Sbjct: 626 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG 680 >gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries] gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries] Length = 864 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +A EG KLV AD + +E +++A +AG Q AF G+D+++ T + F Sbjct: 626 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG 680 >gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi] Length = 850 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +A EG KLV AD + +E +++A +AG Q AF G+D+++ T + F Sbjct: 612 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG 666 >gi|333023285|ref|ZP_08451349.1| putative gp44 [Streptomyces sp. Tu6071] gi|332743137|gb|EGJ73578.1| putative gp44 [Streptomyces sp. Tu6071] Length = 624 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD-QRAIGKVMELA 438 D + +E RV+A +G+ L AF G DL+ T +F P +TK +R GK A Sbjct: 407 DFSNMELRVMAAASGDPVMLDAFNRGIDLHNITAIAAFGPMPEGMTKHPKRKAGKGTNFA 466 Query: 439 LGYQGGAKA 447 +G+ GG KA Sbjct: 467 VGFGGGWKA 475 >gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I) [Deinococcus deserti VCD115] Length = 923 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 8/144 (5%) Query: 330 PRPSRSHEELDQ--IITHLPTSITSDPDPLQIISDC---VRSCVIASEGKKLVVADLAGI 384 PR R H Q + T +S+ + + I S+ +R IA +G L+ AD + I Sbjct: 647 PRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQI 706 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA +A + +AF G D++ T A+ + VT QR K + + Y Sbjct: 707 ELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMS 766 Query: 445 AKAFQKMASTTGLNLNTFAHLVKT 468 A ++++ G++ A ++T Sbjct: 767 A---HRLSNELGISYVEAAGFIET 787 >gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196] gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196] Length = 891 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A + ++AF+ D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729 >gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] Length = 913 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 33/183 (18%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R I+ EG L+ D + IE R+LA + +++F +D++ T AR F Q Sbjct: 680 IRQAFISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLFG---EQ 736 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN-----------SAP 472 +R I K + L Y G+K K++ T + L +++ +A Sbjct: 737 EAMQKRFIAKSINFGLIYGMGSK---KLSQTLQIPLKQAKEYIESYFALFPTIKDFLNAQ 793 Query: 473 EE----------------WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 EE + D + +M+ N I +F G+A + +K + + H R Sbjct: 794 EEFLLENGYSQTLLGHRRYFDFKRATDFMKANFLREGINSIFQGSAADLIKLSMCEIHKR 853 Query: 517 VSE 519 ++ Sbjct: 854 YAK 856 >gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03] Length = 879 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V +++ L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 700 VTPNDRRNAKAVNFGIVY 717 >gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str. Chicago] Length = 1015 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A+ G +L+ AD IE VLA ++ ++ L AF D++ T A FNV+ Sbjct: 776 IRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 835 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449 V R I K + + Y G AF+ Sbjct: 836 VQPAMRRIAKTINFGIVY--GMSAFR 859 >gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] Length = 910 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T +++P+ P+++ + +R A EG V +D + IE R Sbjct: 635 GRIHSSFQQTVTATGRLSSTEPNLQNIPIRMELGKEIRRVFPAMEGCVFVDSDYSQIELR 694 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA ++ + ++A+ G+D++ T + F+ +VT QR+ K + + Y G A Sbjct: 695 VLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAKAVNFGIVY--GISA 752 Query: 448 F 448 F Sbjct: 753 F 753 >gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As] Length = 922 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A +G + +D + IE R++A ++ + L AF GED++ T A F V + Sbjct: 684 IREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTSLE 743 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 V+ DQR + KV+ L Y G AF +A GL Sbjct: 744 VSSDQRRMAKVINFGLIY--GMSAF-GLARNLGL 774 >gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311] gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG 18311] Length = 879 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V +++ L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 700 VTPNDRRNAKAVNFGIVY 717 >gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] Length = 998 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A AFE G D++ T + F V Sbjct: 755 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEG 814 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 815 MPSEVRRRAKAI 826 >gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115] Length = 926 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 8/144 (5%) Query: 330 PRPSRSHEELDQ--IITHLPTSITSDPDPLQIISDC---VRSCVIASEGKKLVVADLAGI 384 PR R H Q + T +S+ + + I S+ +R IA +G L+ AD + I Sbjct: 650 PRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQI 709 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA +A + +AF G D++ T A+ + VT QR K + + Y Sbjct: 710 ELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMS 769 Query: 445 AKAFQKMASTTGLNLNTFAHLVKT 468 A ++++ G++ A ++T Sbjct: 770 A---HRLSNELGISYVEAAGFIET 790 >gi|37626128|gb|AAQ96504.1| hypothetical protein [Vibrio phage VP16T] Length = 62 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 M GY +V+ HDE++ E P+ D + + LMT W P++A G++ RY Sbjct: 1 MKKCENNGYPVVMHTHDELIAEVPE-DFGSVEEMAALMTEREPWRAWWPIRAAGWQDDRY 59 Query: 674 RK 675 +K Sbjct: 60 QK 61 >gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3] gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3] Length = 995 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A AFE G D++ T + F V Sbjct: 752 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFGVPVEG 811 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 812 MPSEVRRRAKAI 823 >gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066] gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066] Length = 879 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V +++ L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 700 VTPNDRRNAKAVNFGIVY 717 >gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] Length = 997 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A+ G +L+ AD IE VLA ++ ++ L AF D++ T A FNV+ Sbjct: 758 IRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 817 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQ 449 V R I K + + Y G AF+ Sbjct: 818 VQPAMRRIAKTINFGIVY--GMSAFR 841 >gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C] gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C] Length = 1004 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ +A+ G KLV AD + IE RVLA +A +AF G D++ T + F V Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820 Query: 421 -PAQVTKDQRAI 431 P+++ + +AI Sbjct: 821 MPSEIRRRAKAI 832 >gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] Length = 884 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433 K++ +D + IE RVLA +AG++ ++AF+ D++ T R F ++ P VT + R K Sbjct: 655 KILSSDYSQIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQAK 714 Query: 434 VMELALGY 441 + + Y Sbjct: 715 AVNFGIVY 722 >gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021] gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021] Length = 1004 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ +A+ G KLV AD + IE RVLA +A +AF G D++ T + F V Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820 Query: 421 -PAQVTKDQRAI 431 P+++ + +AI Sbjct: 821 MPSEIRRRAKAI 832 >gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803] gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803] Length = 891 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 6/114 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEAR 387 + H +Q++T ++DP+ P+++ +R + SE G + AD + IE R Sbjct: 616 KIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELR 675 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 676 VLAHIANDKGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 930 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 19/160 (11%) Query: 316 TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S CV P QNLPR + + D D L R C +A+ G Sbjct: 642 TGRLS-CVEPNLQNLPR-----NGITAAVAGNDAEEDGDDDLLGF-----RRCFVAAGGC 690 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ D IE RVLA + G+ ++A T D++ F P V+ ++R++ K Sbjct: 691 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP--VSTEERSLAKR 748 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK--TNSAP 472 + + Y G K +A+ G+ ++ H+ TN+ P Sbjct: 749 VVFGVLYGAGPK---TLATHMGVTVDRALHITSLLTNAFP 785 >gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83] gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83] Length = 1004 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ +A+ G KLV AD + IE RVLA +A +AF G D++ T + F V Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820 Query: 421 -PAQVTKDQRAI 431 P+++ + +AI Sbjct: 821 MPSEIRRRAKAI 832 >gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 375 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 13/105 (12%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMA----GEQWKLKAFETGEDLYVTTYARSFNV 419 VR+C I +G V ADL IE R++A + G+ + F G DLY T ++F + Sbjct: 39 VRNCFIPRKGFTFVGADLGQIEPRIMAHIMHTKYGDNSMRQIFMDGVDLYTTGAMQTFGL 98 Query: 420 APAQV---------TKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 T + R + K +LA+ Y K+F K + T Sbjct: 99 EEKYCLDEAYDPTGTFEPRKLMKTGQLAVSYDQSPKSFAKKMNVT 143 >gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101] gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101] Length = 1045 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 15/141 (10%) Query: 329 LPRPSRS-----HEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV 378 +PR RS H +Q T +S+P+ I S +R + + LV Sbjct: 747 IPRLVRSDTQRVHTNFNQTQTDTGRLSSSEPNLQNIPIGTKFSRQIRQAFLPKKDWLLVA 806 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++ E ++A++ +D++ T F +++ ++R +GK + Sbjct: 807 ADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAKLLFE--KEEISSEERRVGKTINFG 864 Query: 439 LGYQGGAKAFQKMASTTGLNL 459 + Y GA QK+A + + + Sbjct: 865 VIYGMGA---QKLARSVKITV 882 >gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603] gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603] Length = 838 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T +++P+ P+++ +R I SE G + AD + IE Sbjct: 562 SKIHTRFNQVLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEEGWIMYAADYSQIEL 621 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 622 RVLAHIAKDEGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 676 >gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] Length = 920 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGI 384 R H +Q +T +SDP+ LQ I +R C I AD + I Sbjct: 643 RTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRTDDGKEIRKCFIPEPKCLFFSADYSQI 701 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E R++A ++ ++ ++AF +G D++ T A+ ++V +V+ QR K + Y Sbjct: 702 ELRIMAHLSQDENMMEAFRSGHDIHRATAAKIWHVPMEEVSDAQRKKAKQANFGIIY 758 >gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] Length = 974 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVV--ADLAGIEA 386 R H Q +T +S+P+ P+++ V K V+ AD + IE Sbjct: 698 GRVHTRFHQTLTATGRLSSSEPNLQNIPIRLEEGRRLRRVFEPTYKDWVIFAADYSQIEL 757 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R+LA ++G++ + AF D++ T A F V P QVT R K + + Y Sbjct: 758 RILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVY 812 >gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633] gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633] Length = 883 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-P 421 VRS + S + KL+ +D + IE RVLA MA + ++AF+ D++ T R F + P Sbjct: 642 VRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNP 701 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT R K + + Y Sbjct: 702 EEVTSSMRRQAKAVNFGIVY 721 >gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056] Length = 880 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + ++ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKSEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] Length = 774 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R AS G L+VAD +E R+LA M G + ++AFE G D + T F+ A+ Sbjct: 505 IRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKAK 564 Query: 424 V 424 V Sbjct: 565 V 565 >gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 28/137 (20%) Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 ++ L N + P+A QV + R A ++N+ +E + DGR+ G + GA TGR Sbjct: 89 EKTLKENSHV-PEAAQVLEYLLLQKRYA--QVNSWLEHVQDDGRVHGRVTTNGAV-TGR- 143 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379 +TH ++ P + R+C I EG+KLV Sbjct: 144 -----------------------MTHQNPNMAQVPSVNSEYGEDCRNCWIVPEGRKLVGV 180 Query: 380 DLAGIEARVLAWMAGEQ 396 D +G+E R+LA G++ Sbjct: 181 DASGLELRMLAHYMGDE 197 >gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912] gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912] Length = 890 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV------RSCVIASE-GKKLVVADLA 382 P + H Q +T ++DP+ LQ I V R I SE G K+V AD + Sbjct: 611 PETGKIHTCFQQAVTATGRLSSTDPN-LQNIPVRVEEGRRLRQAFIPSESGWKIVSADYS 669 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA + + ++AF D++ T A F V QVT R K + + Y Sbjct: 670 QIELRVLAHFSKDPALVQAFRDDLDIHARTAAEVFEVPQEQVTPGMRRQAKAVNFGIVY 728 >gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] Length = 880 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + AD + IE RVLA +AG++ +KAF+ D++ T F+V +VT + R K + Sbjct: 653 MFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAV 712 Query: 436 ELALGY 441 + Y Sbjct: 713 NFGIVY 718 >gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048] gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048] Length = 891 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 615 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIEL 674 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A + ++AF D++ T F V +VT + R K + + Y Sbjct: 675 RVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G + D + IE R+LA + ++ L AF ED++ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL A+L K+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEANLAKS 741 >gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] Length = 880 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQVENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLSLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + + VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419] gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419] Length = 1004 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ +A+ G KLV AD + IE RVLA +A +AF G D++ T + F V Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820 Query: 421 -PAQVTKDQRAI 431 P ++ + +AI Sbjct: 821 MPGEIRRRAKAI 832 >gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 416 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421 +R + S G ++ +D + IE RVLA ++ ++ +AF+ G D++ +T R FNV +P Sbjct: 175 IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSP 234 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 235 DEVTPNMRRQAKAVNFGIVY 254 >gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873] gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873] Length = 881 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +A+ + ++ AD + IE RVLA +A ++ + AF+ +D++ T + F V Sbjct: 641 IRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITASEVFRVPVE 700 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQK 450 +VT R+ K + + Y GA + K Sbjct: 701 EVTPLMRSNAKAVNFGIVYGIGAFSLSK 728 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G + D + IE R+LA + ++ L AF ED++ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL A+L K+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEANLAKS 741 >gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] Length = 872 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVA-DLAG 383 P R H +Q+ T +++P+ I + +R + EG L+++ D + Sbjct: 593 PATGRIHTHFNQMATVTGRLSSTEPNLQNIPTRTEVGKRMREMFVPGEGYDLLMSCDYSQ 652 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E RV+A +A ++ L +F G+D++ T + F V QVT R+ K + + Y Sbjct: 653 VELRVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIY 710 >gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100] Length = 702 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 19/143 (13%) Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 N DGR+ G+ G + T R S Q LP + TSDP Sbjct: 348 NKDGRVHGSFNATG-TETTRLSSNNPNMQQLP------------------AKTSDPKRFD 388 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 R A E L+ D + +E R+LA AG++ +AF G DL+ T + + Sbjct: 389 YQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWG 448 Query: 419 VAPAQVTKDQRAIGKVMELALGY 441 + +V + R K + + Y Sbjct: 449 MPVDKVPAEFRKKAKAVNFGIAY 471 >gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13] gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653] gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653] Length = 978 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] Length = 885 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 32/210 (15%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL T+T T VL K+ +P +V + R A + + Sbjct: 541 KQLGQILFEKLGLPPIKKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQIAKIQSTY-VKG 599 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + DGR+ Q + TGR S QN+P R E Sbjct: 600 LLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIP--VRLEE---------------- 640 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R + S + + D + +E RVLA ++G++ +AF+TG D++ T Sbjct: 641 -------GKKIRKAFVPSNSDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHT 693 Query: 413 YARSFNV-APAQVTKDQRAIGKVMELALGY 441 + F++ +P +VT + R K + + Y Sbjct: 694 AMKIFHLDSPNEVTPNMRRHAKAVNFGIVY 723 >gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14] Length = 878 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 34/212 (16%) Query: 237 EKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF E GL LE +T T VL + P ++ R + + Sbjct: 532 KQLGIILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVV 591 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L +A+ DG++ T ++TGR S QN+P L+Q Sbjct: 592 G-LQDAILEDGKIH-TRYVQDLTQTGRLSSTDPNLQNIPV------RLEQ---------- 633 Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R + S E L+ +D + IE RVLA ++ ++ ++AF+ G D++ Sbjct: 634 ---------GRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHT 684 Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 +T R F + A+ VT + R K + + Y Sbjct: 685 STAMRVFGIEKAEDVTPNDRRNAKAVNFGVVY 716 >gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] Length = 871 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 5/114 (4%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +++P+ P+++ + +R + E V AD + IE R Sbjct: 596 GRIHGKFNQTVTATGRLSSTEPNLQNIPVRMELGRMIRKVFVPKEDCVFVDADYSQIELR 655 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA +G++ +KA+ D++ T ++ F+ +VT QR K + + Y Sbjct: 656 VLAHCSGDEQLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIVY 709 >gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33] gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33] gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] Length = 994 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 811 MPSEVRRRAKAI 822 >gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126] gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126] Length = 936 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ V E +L+ AD + IE R++A + ++ ++AF+ G D++ TT A+ F V V Sbjct: 698 KAFVPRDENYQLMAADYSQIELRIMAAFSQDEAMMEAFKNGRDIHATTAAKVFGVDLDDV 757 Query: 425 TKDQRAIGKVMELALGYQGGAKAF 448 R K E+ G G AF Sbjct: 758 DPGMRR--KAKEVNFGIIYGISAF 779 >gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 645 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 34/159 (21%) Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++ +E +NS GR+ + LG + TGR++ QN PR Sbjct: 336 IDGYLEYINSVTGRIHPDMFPLG-TETGRFAARNPNLQNCPR------------------ 376 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D DP+ VR+ IA +GK L+ D + IE RV A+ ++ L+ + TG D++ Sbjct: 377 --KDNDPVG-----VRNFFIAPKGKALLSLDFSQIELRVGAFYCRDERMLETYRTGGDIH 429 Query: 410 VTTYARSFNVA-------PAQVTKDQRAIGKVMELALGY 441 T + + + AQ K++RAI K + Y Sbjct: 430 AQTTSVIYRIPFEEAADKSAQHYKERRAIAKNCNFGVFY 468 >gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445] gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445] Length = 978 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513] gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 994 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 811 MPSEVRRRAKAI 822 >gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2] gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2] Length = 978 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1] gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1] Length = 994 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 811 MPSEVRRRAKAI 822 >gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94] gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1] gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94] gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1] Length = 994 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 811 MPSEVRRRAKAI 822 >gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] Length = 892 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421 +R + S G ++ +D + IE RVLA ++ ++ +AF+ G D++ +T R FNV +P Sbjct: 651 IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSP 710 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 711 DEVTPNMRRQAKAVNFGIVY 730 >gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28] gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90] Length = 978 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330] gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365] gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40] gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330] gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365] gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40] Length = 979 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 736 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 795 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 796 MPSEVRRRAKAI 807 >gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1] gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94] Length = 978 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1] gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1] Length = 978 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] Length = 1033 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R IAS G KLV AD + IE R+L+ +A KAF+ G D++ T + F V Sbjct: 790 IRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDIHAMTASEMFGVPVEG 849 Query: 421 -PAQVTKDQRAI 431 P+++ + +AI Sbjct: 850 MPSEIRRRAKAI 861 >gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] Length = 978 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] Length = 994 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 811 MPSEVRRRAKAI 822 >gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13] gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13] Length = 994 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 811 MPSEVRRRAKAI 822 >gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33] gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915] gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99] gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99] gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915] gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99] Length = 978 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 978 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840] gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840] Length = 978 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308] gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19] gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel [Brucella melitensis biovar Abortus 2308] gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19] gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] Length = 978 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1] gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1] Length = 978 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713] Length = 892 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421 +R + S G ++ +D + IE RVLA ++ ++ +AF+ G D++ +T R FNV +P Sbjct: 651 IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSP 710 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 711 DEVTPNMRRQAKAVNFGIVY 730 >gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826] Length = 878 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR C A EG V D + IE R+LA + + L+AF+ ED++ T F + Q Sbjct: 647 VRECFEAREGYSFVGLDYSQIELRLLAHFSRDPALLEAFKNDEDIHARTAISIFGSSDGQ 706 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 RA+ K + L Y G+ + T Sbjct: 707 ----NRAVAKSINFGLIYGMGSSKLANQVNIT 734 >gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21] gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21] Length = 811 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%) Query: 351 TSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403 +SDP+ LQ I +R + SE L+ +D + IE RVLA ++ ++ + AF+ Sbjct: 621 SSDPN-LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFK 679 Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 G D++ +T R F + P VT + R K + + Y Sbjct: 680 EGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVY 718 >gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026] gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026] Length = 978 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686] Length = 995 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 752 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 811 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 812 MPSEVRRRAKAI 823 >gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118] gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118] Length = 892 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421 +R + S G ++ +D + IE RVLA ++ ++ +AF+ G D++ +T R FNV +P Sbjct: 651 IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSP 710 Query: 422 AQVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 711 DEVTPNMRRQAKAVNFGIVY 730 >gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length = 513 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 I +RS VIA G V+AD +E R+LA M+G+ ++ A +DLY A +F+ Sbjct: 285 IPKPLRSSVIADPGHTFVIADAGQLEPRILAAMSGDA-RMVAAAGADDLYAPVAAETFD 342 >gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel] gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel] Length = 849 Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 45/213 (21%) Query: 220 QELESLTYGL------VSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKK 268 + LE YGL V+S+R L KL LF GL + + +T VL+ + Sbjct: 484 RSLEREIYGLAGCKFNVASARQLGKL---LFERMGLSSSTKKMPSGSYSTNAEVLT---E 537 Query: 269 LTPQAIQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 L + +++ + ++ + LK ++ L+ + + T + A+ TGR S Sbjct: 538 LAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTERVHTSYSMVATATGRISSSNPN 597 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385 QN+P S+ E +R +A EG KLV AD + +E Sbjct: 598 LQNIPIRSKEGTE-------------------------IRKAFVAREGHKLVSADYSQME 632 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +++A +AG Q AF G+D++ T + F Sbjct: 633 LKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFG 665 >gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3] gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3] Length = 869 Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 6/134 (4%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI------ASEGKKLV 377 P Q P SR H +Q+ T DP+ I R ++ + + Sbjct: 586 LPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTRQNNYFL 645 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R LA ++ ++ AF + ED++ T ++ F+V +VTK QR K + Sbjct: 646 SADYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNF 705 Query: 438 ALGYQGGAKAFQKM 451 + Y A K+ Sbjct: 706 GIIYGQQAYGLSKI 719 >gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] Length = 931 Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKK-LVVADLAG 383 P+ R H +Q I +S+P+ P++ I +R + S+ L+ AD + Sbjct: 650 PKTGRIHTSFNQHIAATGRLSSSNPNLQNIPIRTEIGREIRGAFVPSDAHHTLLSADYSQ 709 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+ A ++G+ L AF+ ED++ TT F +VTKD R K + + Y Sbjct: 710 IELRIAAELSGDPTMLGAFQNREDIHSTTAKLIFET--DEVTKDMRRKAKEVNFGVLY 765 >gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] Length = 1000 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 755 IRTAFISTPGHKLISADYSQIELRVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEG 814 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 815 MPSEVRRRAKAI 826 >gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] Length = 1003 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 15/145 (10%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA++G KLV AD + IE R+LA +A +AF+ G D++ T + F V Sbjct: 760 IRRAFIAAKGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 819 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN----SAPEEWEDA- 478 + + R K + + Y G AF +A+ G+ +K + DA Sbjct: 820 MPGEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIKKYFERFPGIRAYMDAT 876 Query: 479 ENFCRWMQENHPEHAIEDLFIGTAC 503 +FCR EH G C Sbjct: 877 RDFCR-------EHGYVTTLFGRKC 894 >gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98] Length = 877 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386 S+ H +Q++T +++P+ P+++ +R I S EG + AD + IE Sbjct: 601 SKIHTRFNQVLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSQEGWVMYAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 661 RVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNFGIVY 715 >gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] Length = 880 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T ++DP+ P+++ +R + SE L+ AD + Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA ++ +Q ++AF D++ T F+VA +VT R K + + Y Sbjct: 661 IELRVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNFGIVY 718 >gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] Length = 1025 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R +A+ G KLV AD + IE R+L+ +A KAF+ G D++ T + F V Sbjct: 782 IRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 841 Query: 421 -PAQVTKDQRAI 431 P+++ + +AI Sbjct: 842 MPSEIRRRAKAI 853 >gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA] gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei] Length = 1808 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVL 389 + ++ H +Q+ T + P+ QI +R I +E ++AD IE ++ Sbjct: 1540 KTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPTENNIFIIADFKQIELKIA 1599 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A + ++ LKA+ DL+ T + ++ K+ R + K + L Y + Sbjct: 1600 AEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINKEDRHVAKAINFGLLYGMNYVNLR 1659 Query: 450 KMAST 454 A+T Sbjct: 1660 TYANT 1664 >gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] Length = 1021 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R IA+ G KLV AD + IE R+LA +A +AF+ G D++ T + F V Sbjct: 778 IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKD 837 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 838 MPSEVRRRAKAI 849 >gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] Length = 879 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC IA +G + D + IE R+LA + ++ L+AF+ ED++ T F + Sbjct: 649 KSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEAFKNDEDIHARTAIMIF----GEN 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQK 450 + R++ K + L Y G K + Sbjct: 705 NYETRSVAKSINFGLIYGMGYKTLSQ 730 >gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4] gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4] Length = 513 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 I +RS VIA G V+AD +E R+LA M+G+ ++ A +DLY A +F+ Sbjct: 285 IPKPLRSSVIADPGHTFVIADAGQLEPRILAAMSGDT-RMVAAAGADDLYAPVAAETFD 342 >gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] Length = 1025 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R +A+ G KLV AD + IE R+L+ +A KAF+ G D++ T + F V Sbjct: 782 IRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 841 Query: 421 -PAQVTKDQRAI 431 P+++ + +AI Sbjct: 842 MPSEIRRRAKAI 853 >gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B] gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B] Length = 880 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%) Query: 351 TSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403 +SDP+ LQ I +R + SE L+ +D + IE RVLA ++ ++ + AF+ Sbjct: 621 SSDPN-LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFK 679 Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 G D++ +T R F + P VT + R K + + Y Sbjct: 680 EGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVY 718 >gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 868 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q++T +++P+ I + RS I EG + AD + +E R+ Sbjct: 594 RIHGSFQQMVTATGRLSSTEPNLQNIPIRTEMGRVFRSVFIPKEGSVFLDADYSQVELRL 653 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ ++ ++A+ D++ T + F+V +VT + R K + + Y G AF Sbjct: 654 LASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAVNFGIVY--GISAF 711 >gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14] gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14] Length = 1014 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 15/145 (10%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA+ G KLV AD + IE R+LA +A +AF G D++ T + F V Sbjct: 771 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVTG 830 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN----SAPEEWEDA- 478 + + R K + + Y G AF +A+ G+ +K + DA Sbjct: 831 MPGEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGTYIKKYFERFPGIRAYMDAT 887 Query: 479 ENFCRWMQENHPEHAIEDLFIGTAC 503 +FCR EH + G C Sbjct: 888 RDFCR-------EHGYVETLFGRKC 905 >gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] Length = 873 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 38/269 (14%) Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 EPLS E+ +G VDV + + VE +L+QE+ + G + Sbjct: 475 EPLSPILAEM-------EKQGIAVDVQRLQEFGRELTVELQRLEQEIYA-DAGETFNINS 526 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 ++L LF + GL T+T + ++L Q V R+ R ++T V Sbjct: 527 PQQLGHILFEKLGLPPMKKTKTGYSTDADTLEELRDQHSIV--ERVLDYRQLSKLMSTYV 584 Query: 296 EAMNS---DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + +GR+ T Q + TGR S QN+P L ++ T PT Sbjct: 585 NGLLAQIHEGRVHTTFQ-QTVTATGRLSSTEPNLQNIPIRLELGRLLRKVFT--PTQ--- 638 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 EG L+ AD + IE R+LA + ++ ++F +D++ T Sbjct: 639 -------------------EGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRT 679 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 + F + A+VTKD R K + L Y Sbjct: 680 ASEVFGIPMAEVTKDMRRKAKAVNFGLIY 708 >gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813] Length = 880 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D++ +T R F + Sbjct: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P VT + R K + + Y Sbjct: 698 PENVTPNDRRNAKAVNFGIVY 718 >gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515] gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515] Length = 880 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%) Query: 351 TSDPDPLQII------SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403 +SDP+ LQ I +R + SE L+ +D + IE RVLA ++ ++ + AF+ Sbjct: 621 SSDPN-LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFK 679 Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 G D++ +T R F + P VT + R K + + Y Sbjct: 680 EGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVY 718 >gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] Length = 876 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 24/132 (18%) Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P +E+ +I +P + CVI S Sbjct: 610 VTTTGRLSSTEPNLQNIPIKYEMGKEIRKIF--VPEN---------------EDCVILS- 651 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 AD + IE RVLA +A ++ + AF D++ T + F V +VT QR+ Sbjct: 652 ------ADYSQIELRVLAHIADDENLISAFINHSDIHTKTASEVFKVPIDEVTSAQRSNA 705 Query: 433 KVMELALGYQGG 444 K + + Y G Sbjct: 706 KAVNFGIVYGIG 717 >gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255] gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255] Length = 1010 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 71/301 (23%), Positives = 108/301 (35%), Gaps = 90/301 (29%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA+ G KLV AD + IE R+LA +A +AF G D++ T + F V Sbjct: 767 IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVQG 826 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN----SAPEEWEDA- 478 + + R K + + Y G AF +A+ G+ A +K + DA Sbjct: 827 MPGEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAAAYIKKYFERFPGIRAYMDAT 883 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 FCR EH G C H + N H+AF Sbjct: 884 REFCR-------EHGYVTTLFGRKC----------HYPDIKSPNPSHRAF---------- 916 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 N R+ +N + G Sbjct: 917 ------------------------------------NERAAINARLQ---------GSAA 931 Query: 599 ENIVQAVSR--DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM--LYHLMTSN 654 + I +A++R D LA ++A ++L VHDE++ E PD DE A++ + H+M Sbjct: 932 DIIRRAMARMDDALAARNLSAR-----MLLQVHDELIFEVPD-DEVAATLPVVQHVMQDA 985 Query: 655 P 655 P Sbjct: 986 P 986 >gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] Length = 1020 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA+ G KLV AD + IE R+LA +A +AF+ G D++ T + F V Sbjct: 777 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 836 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 + + R K + + Y G AF Sbjct: 837 MPSEVRRRAKAINFGIIY--GISAF 859 >gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1] gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1] Length = 880 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D++ +T R F + Sbjct: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P VT + R K + + Y Sbjct: 698 PENVTPNDRRNAKAVNFGIVY 718 >gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] Length = 878 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD--CVRSCVIASEGKKLVVADLAGIEA 386 R H +Q +T +++P+ P+++ R+ V +G L+ AD + IE Sbjct: 599 GRIHTHFNQTVTATGRLSSTEPNLQNIPIRLEEGRRVRRAFVPGKKGNLLLSADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R+LA ++ + + +F ED++ T A F V P VT + R K + + Y Sbjct: 659 RILAHVSKDPVLIDSFRKEEDIHRRTAAEVFGVLPEDVTPELRDRAKAVNFGIVY 713 >gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 928 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 40/78 (51%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R I + + AD + IE R++A ++ ++ L+AF G+D++ + F V A+ Sbjct: 689 IRRVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAE 748 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K+ + Y Sbjct: 749 ITCDMRRKAKITNFGIIY 766 >gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1016 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ KL+ AD + IE RVLA +A KAFE G D++ T + F V Sbjct: 771 IRTAFISTPRHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830 Query: 421 -PAQVTKDQRAI 431 P +V + +AI Sbjct: 831 MPGEVRRRAKAI 842 >gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2] gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2] Length = 625 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 12/101 (11%) Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 PLQ S R+ + A EG+++ D + IE +A +AG+ L F G DLY R Sbjct: 374 PLQQFSGPARAILTADEGQRMWSVDWSQIEPVTMALLAGDSEFLAPFAAGADLY-EPIMR 432 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + + +R + KV+ L Y GA K+A T G Sbjct: 433 AAGI--------ERKVAKVLLLQTMYGSGAA---KIAETIG 462 >gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] Length = 1047 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 38/200 (19%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF------ 417 +R +AS G LVVAD +E R+LA + G + ++AF+ G D + T + Sbjct: 780 IRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHIREA 839 Query: 418 ----------------NVAPAQVTKD----QRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + P + KD +R K++ ++ Y A GL Sbjct: 840 VENGQVILEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTA---------IGL 890 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + W + R QE + AIED ++ T R ++ R K SR Sbjct: 891 SRDWKVSVEEAQDTVKLWYNDRQEVRKWQERRKKEAIEDGYVRTLLGRSRRFPRYK-SRA 949 Query: 518 SELWNELHQAFEQTIENGKA 537 + N + +A T G A Sbjct: 950 QK--NHIQRAAINTPVQGSA 967 >gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] Length = 885 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 29/187 (15%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL K +P +V + R A + + L++ + DGR+ Q + T Sbjct: 564 STSVEVLEQLKDQSPIVQKVLDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYQ-QTLTAT 621 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P R E +R I S Sbjct: 622 GRLSSVDPNLQNIP--VRLEE-----------------------GKKIRKAFIPSNKDGY 656 Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 + + D + +E RVLA ++G++ +AF+TG D++ T + F++ +P +VT + R K Sbjct: 657 IFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTPNMRRHAKA 716 Query: 435 MELALGY 441 + + Y Sbjct: 717 VNFGIVY 723 >gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 696 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H T +SDP+ LQ I +R+ IA G KL+ AD + Sbjct: 414 PQTKRVHTSYAMASTSTGRLSSSDPN-LQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQ 472 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA----PAQVTKDQRAI 431 IE RVLA +A +AF G D++ T + F V P++V + +AI Sbjct: 473 IELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAI 524 >gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] Length = 877 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLSQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYLQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes] gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] Length = 867 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R ++S L++ AD + IE RVLA ++ ++ +++F ED+++ T + F V+ Sbjct: 627 IRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFKVSKE 686 Query: 423 QVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 687 EVTSEMRRRAKAVNFGIVY 705 >gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51] gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 873 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 36/268 (13%) Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 EPLS E+ +G VDV + + VE +L+QE+ + G + Sbjct: 475 EPLSPILAEM-------EKQGIAVDVQRLQEFGRELTVELQRLEQEIYA-DAGETFNINS 526 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL T+T + ++L Q ++ + + S+ +N Sbjct: 527 PQQLGHILFEKLGLPPMKKTKTGYSTDADTLEELRDQHSIVERVLDYRQLSKLMSTYVNG 586 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L+ ++ +GR+ T Q + TGR S QN+P L ++ T PT Sbjct: 587 LLAQIH-EGRVHTTFQ-QTVTATGRLSSTEPNLQNIPIRLELGRLLRKVFT--PTQ---- 638 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 EG L+ AD + IE R+LA + ++ ++F +D++ T Sbjct: 639 ------------------EGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTA 680 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGY 441 + F + A+VTKD R K + L Y Sbjct: 681 SEVFGIPMAEVTKDMRRKAKAVNFGLIY 708 >gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M] gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] Length = 994 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE R+LA +A +AF G D++ T + F V Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 811 MPSEVRRRAKAI 822 >gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 688 Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ R H T +SDP+ LQ I +R+ IA G KL+ AD + Sbjct: 406 PQTKRVHTSYAMASTSTGRLSSSDPN-LQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQ 464 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA----PAQVTKDQRAI 431 IE RVLA +A +AF G D++ T + F V P++V + +AI Sbjct: 465 IELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAI 516 >gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47] Length = 975 Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R+ A EG L+ AD + IE RVLA +G++ + A+ D++ A + Sbjct: 729 AIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHTRVAAEVNGIEE 788 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++VT D R I K + + Y G F +A T G++ Sbjct: 789 SEVTSDLRRIAKTINFGIVY--GQSPF-GLAKTLGIS 822 >gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] Length = 885 Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 29/187 (15%) Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL K +P +V + R A + + L++ + DGR+ Q + T Sbjct: 564 STSVEVLEQLKDQSPIVQKVLDYRQIAKIQSTY-VKGLLDVIQPDGRVHTRYQ-QTLTAT 621 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P R E +R I S Sbjct: 622 GRLSSVDPNLQNIP--VRLEE-----------------------GKKIRKAFIPSNKDGY 656 Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 + + D + +E RVLA ++G++ +AF+TG D++ T + F++ +P +VT + R K Sbjct: 657 IFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTTNMRRHAKA 716 Query: 435 MELALGY 441 + + Y Sbjct: 717 VNFGIVY 723 >gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii] Length = 1813 Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVL 389 + ++ H +Q+ T + P+ QI +R I +E ++AD IE ++ Sbjct: 1545 KTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIPTENNIFIIADFKQIELKIA 1604 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A + ++ LKA+ DL+ T + ++ K+ R + K + L Y + Sbjct: 1605 AEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINKEDRHVAKAINFGLLYGMNYVNLR 1664 Query: 450 KMAST 454 A+T Sbjct: 1665 TYANT 1669 >gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] Length = 978 Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ IA G KL+ AD + IE R+LA +A +AF G D++ T + F V Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 795 MPSEVRRRAKAI 806 >gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 870 Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 30/159 (18%) Query: 288 VLKLN-TLVEAM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + KLN T VE + +SDG + + + TGR S QN+P E+ ++ Sbjct: 575 ITKLNSTYVEGLKNVIDSDGHIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKV 633 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 PD EG L+ D + IE RVLA M+ ++ + AF Sbjct: 634 FI---------PD---------------EEGDILLSCDYSQIELRVLAHMSNDENMIDAF 669 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + D++ T + F V VT R+ K + + Y Sbjct: 670 KHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIVY 708 >gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368] Length = 877 Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYLQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301] Length = 877 Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYLQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 942 Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + AD + IE R+LA ++G++ + AF D++ T A F V P QVT R K + Sbjct: 715 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 774 Query: 436 ELALGY 441 + Y Sbjct: 775 NFGIVY 780 >gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56] gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56] Length = 869 Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust. Identities = 76/309 (24%), Positives = 124/309 (40%), Gaps = 48/309 (15%) Query: 157 FGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 FGE+ T+ + K L+ + E L + TI G +DV L +I Sbjct: 445 FGEFVSHLPTIKETLLKELKSKNIEDIFFNMEMPLEKVLFTIERNGMPLDVEDLQNLEKI 504 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 + E L ++ +L G + + ++L L+ + GL D +T VL + +T Sbjct: 505 LSEELAILADDIYALA-GSPFNIKSPKQLAEVLYNKLGLTPVDKARSTKAEVLEA---MT 560 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325 + + ++ A RS L+T V A+ R+ T +G + TGR + C P Sbjct: 561 GEHDVI--EKILAFRSVEKLLSTYVRALPKQVDPCTFRIHPTFNQMG-TVTGRLA-CQDP 616 Query: 326 P-QNLPRPSRSHEELDQII--THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382 QN+P S L + TH T S AD + Sbjct: 617 NLQNIPIRSERGRLLRKAFCDTHQNTYFLS--------------------------ADYS 650 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R LA ++ ++ AFE+ ED++ T ++ F+V +VTK QR K + + Y Sbjct: 651 QIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAKTVNFGIIYG 710 Query: 443 GGAKAFQKM 451 A K+ Sbjct: 711 QQAYGLSKI 719 >gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] Length = 937 Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +A +GK LV D + IE R+LA +A +AF G D++ T A FNV Sbjct: 697 IREAFVAPKGKLLVSVDYSQIELRILAHIADIPALKQAFREGHDIHAMTAAEMFNV 752 >gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121] gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121] Length = 520 Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 12/92 (13%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 I +RS V+A G VVAD +E R+LA M+G++ ++ A +DLY A +F Sbjct: 290 IPKTMRSSVVADPGHVFVVADAGQLEPRILAAMSGDR-RMMAAAGDDDLYALVGAEAFG- 347 Query: 420 APAQVTKDQRAIGKVMELALGY---QGGAKAF 448 RA KV L + Y G AKA Sbjct: 348 -------GDRAKAKVAILGVLYGATAGEAKAL 372 >gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645] gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645] Length = 880 Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGK-KLVVADLAG 383 + R H +Q++ ++DP+ LQ I S +RS I KL+ AD + Sbjct: 594 KTDRVHTSFNQVVAATGRLSSNDPN-LQNIPIRTQESREIRSAFIPGTPDWKLLCADYSQ 652 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +G+ +++++ ED++ + + V QVT R K + + Y Sbjct: 653 IELRVLAHFSGDPALMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVY 710 >gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] Length = 929 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R IA EG LV AD + IE R+LA MA +AF+ G D++ T + F V Sbjct: 687 IRQAFIAEEGNVLVSADYSQIELRILAHMADIPALKQAFKDGLDIHAMTASEMFGV 742 >gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] Length = 1027 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R +A+ G KLV AD + IE R+L+ +A KAF+ G D++ T + F V Sbjct: 784 IRRAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 843 Query: 421 -PAQVTKDQRAI 431 P+++ + +AI Sbjct: 844 MPSEIRRRAKAI 855 >gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] Length = 928 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-ISDC----VRSCVIASEGKKLVVADLAGIE 385 + + H +Q +T +S+P+ I I D +R I + AD + IE Sbjct: 651 KTGKIHTSFNQTVTATGRLSSSNPNLQNIPIRDSDGKEIRKAFIPDQDSLFFSADYSQIE 710 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++ + ++AF G+D++ T A+ + +T DQR K + Y Sbjct: 711 LRIMAHLSHDNNMMEAFLHGDDIHAATAAKVYKQDINTITSDQRRKAKTANFGIIY 766 >gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261] gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261] Length = 877 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 ++ V E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 638 KAFVPEREDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 698 VTANDRRNAKAVNFGVVY 715 >gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi] gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi] Length = 909 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R G + AD + IE +LA ++ ++ +KAFE +D+++ T ++ F + + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDETLIKAFENNKDIHIETASKLFKIEEKE 728 Query: 424 -VTKDQRAIGKVMELALGYQ 442 +T + R I K + + Y+ Sbjct: 729 KITPNLRRIAKSINFGIIYR 748 >gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain Friedlin] gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major] gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major strain Friedlin] Length = 931 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 23/227 (10%) Query: 316 TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S CV P QNLPR IT ++ D + + R C +A++G Sbjct: 643 TGRLS-CVEPNLQNLPRNG---------ITAAVAGNDAEEDGEEDLLG-FRRCFVATDGC 691 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ D IE RVLA + G+ ++A T D++ F P V+ ++R + K Sbjct: 692 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP--VSTEERRLAKR 749 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + L Y G K +A+ G+ ++ H+ + DA Q E A Sbjct: 750 VVFGLLYGAGPKT---LATHMGVTVDRALHITSLLANAFPGIDA------YQRRVIEEAR 800 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + F+ T R++ + + +S QAF ++ A + + Sbjct: 801 TNGFVRTLSGRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMK 847 >gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum] Length = 872 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I +R C IA E + L+ AD + IE Sbjct: 598 GRLHGQFNQTVTATGRLSSSNPN-LQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIEL 656 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA + + + FE ED++ T AR P VT + R K + + Y G Sbjct: 657 RLLAHFSEDPELMAVFERNEDIHART-ARLLFGDP--VTPETRRKAKTINFGILY--GMS 711 Query: 447 AF 448 AF Sbjct: 712 AF 713 >gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 1025 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVI-ASEGKKLVVADLAGIEA 386 R H +Q I ++DP+ LQ I + +R+ I E + L+ D + +E Sbjct: 749 RIHTTFEQTIAATGRLSSADPN-LQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A + ++ ++AF +G D + + + + QVT DQR+ K M L Y Sbjct: 808 RIMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAY 862 >gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] Length = 886 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 38/247 (15%) Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTET--- 257 A LNQ+ + KL QELE Y L ++L LF + L T+T Sbjct: 507 ASVLNQLGNDFALKL-QELEHKIYQQAGEEFNLNSPKQLGHILFEKLNLPPIKKTKTGYS 565 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRT 316 T VL K +P ++ + R A + L+E + DGR+ LQ L A T Sbjct: 566 TSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY-VKGLLECIQPDGRIHTRYLQTLTA--T 622 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376 GR S QN+P +R+ E +R + S Sbjct: 623 GRLSSVDPNLQNIP--TRTDE-----------------------GKQIRKAFVPSTKDGY 657 Query: 377 VVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 + + D + +E RVLA ++G++ +AF++G D++ T + F++ +P +VT R K Sbjct: 658 IFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKA 717 Query: 435 MELALGY 441 + + Y Sbjct: 718 VNFGIVY 724 >gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1] gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1] Length = 1027 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R+ A EG L+ AD + IE RVLA +G++ + A+ D++ A + Sbjct: 781 AIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHTRVAAEVNGIEE 840 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++VT D R I K + + Y G F +A T G++ Sbjct: 841 SEVTSDLRRIAKTINFGIVY--GQSPF-GLAKTLGIS 874 >gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] Length = 885 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQ 423 ++ V + EG ++ +D + +E RVLA + G++ + F+ GED++ +T R F++ A A+ Sbjct: 646 KAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAE 705 Query: 424 VTKDQRAIGKVMELALGY 441 + ++ R K + + Y Sbjct: 706 IDRNMRRRAKAVNFGIVY 723 >gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48] gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48] Length = 953 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R+ +A G KL+ AD + IE R+LA + KAF+ G D++ T + F V Sbjct: 710 IRTAFVARAGHKLISADYSQIELRLLAHIGDIGQLKKAFQDGIDIHALTASEMFGVPVEG 769 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + + R K + + Y G AF + + G++ +KT Sbjct: 770 MPSEVRRRAKAINFGIIY--GISAF-GLGNQLGIDNQEAGRYIKT 811 >gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4] gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4] Length = 516 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 11/93 (11%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 I +RS V+A G VVAD +E R+LA M+G++ ++ A +DLY A +F Sbjct: 290 IPKTMRSSVVADPGHVFVVADAGQLEPRILAAMSGDR-RMMAAAGDDDLYALVGAEAFG- 347 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 RA KV L + Y GA A + A Sbjct: 348 -------GDRAKAKVAILGVLY--GATAGEAKA 371 >gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] Length = 881 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ ++AF G D++ +T R F + P VT + R K Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRRNAKA 712 Query: 435 MELALGY 441 + + Y Sbjct: 713 VNFGVVY 719 >gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ] gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ] Length = 853 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 25/108 (23%) Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370 + A+ TGR S QN+P S+ E+ +RS IA Sbjct: 587 MTATATGRLSSSNPNLQNIPIRSKDGEK-------------------------IRSAFIA 621 Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +G KL+ AD + +E ++LA +A + +AF G D++V T + F Sbjct: 622 EKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIFG 669 >gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031] gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031] Length = 877 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYMQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG'] Length = 872 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ LQ I +R C IA E + L+ AD + IE Sbjct: 598 GRLHGQFNQTVTATGRLSSSNPN-LQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIEL 656 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA + + + FE ED++ T AR P VT + R K + + Y G Sbjct: 657 RLLAHFSEDPELMAVFERNEDIHART-ARLLFGDP--VTPETRRKAKTINFGILY--GMS 711 Query: 447 AF 448 AF Sbjct: 712 AF 713 >gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545] Length = 877 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYMQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 727 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA KKL+ AD + IE R+LA +A +AF+ D++ + F V + Sbjct: 484 IRRAFIAPPTKKLISADYSQIELRILAHVAQINPLYQAFKNSLDIHTLVASEIFGVKIEE 543 Query: 424 VTKDQRAIGKVMELALGY 441 V+ R K + ++ Y Sbjct: 544 VSSHMRQHAKTINFSIIY 561 >gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 895 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 + AD + IE R+LA ++G++ + AF D++ T A F V P QVT R K + Sbjct: 668 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 727 Query: 436 ELALGY 441 + Y Sbjct: 728 NFGIVY 733 >gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA] gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA] Length = 877 Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYMQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|194432078|ref|ZP_03064367.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012] gi|194419607|gb|EDX35687.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012] Length = 72 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET I +T G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAI 62 >gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797] gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797] Length = 900 Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382 P R H +Q++ +SDP+ LQ I ++ + E +L+ AD + Sbjct: 614 PETGRIHASFNQVVAATGRLSSSDPN-LQNIPVRTQEGRQIRKAFIPQDENWRLLCADYS 672 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+LA ++ + +AF G D++ + F V QV D R K + + Y Sbjct: 673 QIELRILAHLSQDVALSQAFREGADIHTAVASDIFRVPHDQVDSDMRRTAKAVNFGVIY 731 >gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104] gi|332204058|gb|EGJ18123.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47901] Length = 877 Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYMQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1] Length = 474 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 236 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 292 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + K++R+I K + L Y G+K K++ T ++LN Sbjct: 293 GDLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 328 >gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278] gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278] Length = 1034 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA+ G KLV AD + IE R+LA +A +AF+ G D++ T + F V Sbjct: 791 IRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 850 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 + + R K + + Y G AF Sbjct: 851 MPSEVRRRAKAINFGIIY--GISAF 873 >gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925] gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925] Length = 881 Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 25/157 (15%) Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L ++ DG++ + + TGR S QN+P E+ ++ +P + Sbjct: 597 LKHVIDEDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVF--VPNN---- 649 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 VI S AD + IE RVLA +A ++ + AF+ +D++ T Sbjct: 650 -----------EESVIFS-------ADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITA 691 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 + F V +VT R+ K + + Y GA + K Sbjct: 692 SEVFKVHIDEVTPLMRSNAKAVNFGIVYGIGAFSLSK 728 >gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251] gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251] Length = 902 Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 27/180 (15%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A EGKKL+ D + IE R+LA ++ ++AF +D+++ T F A Sbjct: 667 IREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFMQDKDIHMQTAIALFGEEDAP 726 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTG------------------------LNL 459 + +R + K + L Y G K + T ++ Sbjct: 727 L---KRNVAKTVNFGLLYGMGQKKLSETLKITTAEAKEIIERYFSSFPSVKSYFRSIVDF 783 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + A V+T + D E+ + + A+ +F G+A + +K + + H + + Sbjct: 784 SKEAGYVETLLKRRRYFDYESASPMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIED 843 >gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall] gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall] Length = 875 Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust. Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 44/214 (20%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A++ DG++ + TGR S QN+P E Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634 Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I + G +++ AD + IE RVLA ++ ++ + AF +D++ T + Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R K + + Y G + + LN+ T +++ Sbjct: 688 VFKVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734 Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505 DA E + + EN E AIE ++ T R Sbjct: 735 IDAYLERYPNVKLYLENIVEEAIEKGYVSTILNR 768 >gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597] gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597] Length = 877 Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 116/278 (41%), Gaps = 41/278 (14%) Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVERTKLDQELESLTYGLV 230 +LE L EQ L ++ + G V + T N++V +E KL QE+ L G Sbjct: 469 QLELLYDMEQPLAFVLAKMEIAGITVKKETLLEMQTENELV-IE--KLTQEIYELA-GEE 524 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL LE +T T VL + P ++ + R A Sbjct: 525 FNINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKI 584 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L + + +DG++ T ++TGR S QN+P L+Q Sbjct: 585 QSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPV------RLEQ---- 632 Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +R + E L+ +D + IE RVLA ++ ++ +KAF+ Sbjct: 633 ---------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQE 677 Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 G D++ +T R F + P VT + R K + + Y Sbjct: 678 GADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVY 715 >gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi] Length = 287 Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 1/112 (0%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-SDCVRSCVIASEGKKLVVADLAGIEARVL 389 + ++ H +Q+ T + P+ QI +R I SE ++AD IE ++ Sbjct: 19 QTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQQNIREIFIPSENNIFIIADFKQIELKIA 78 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 A + ++ LKA+ DL+ T + ++ K+ R + K + L Y Sbjct: 79 AEITNDEIMLKAYNNNIDLHTLTASIITKKGIDEINKEDRHVAKAINFGLLY 130 >gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] Length = 643 Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 86/228 (37%), Gaps = 42/228 (18%) Query: 294 LVEAMNSDGRLRGTLQFLGASR-----------TGRWSGCVFPPQNLPRPSRSHEELDQI 342 L+E + + FLG +R TGR S QN+PR SHE D Sbjct: 328 LLEYFRPQNGVSESCNFLGKNRLYTVWNQTMTVTGRLSSSNPNLQNIPR---SHEFEDLG 384 Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + L + S P+ + S C LV D +E RVLA G ++F Sbjct: 385 VISLRKAFIS---PI-LDSHC------------LVSVDYRQVEIRVLAHFVGPGALRRSF 428 Query: 403 ET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 G D+Y A A VTK++R KV LAL Y G + T Sbjct: 429 SVDGADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVYGSGIHLLARQMGVTTTVAQG 488 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE-DLFIGTACERVKK 508 F + N A E E RWM HA + ++ T C+R +K Sbjct: 489 FKR--QFNYAFPELE------RWMVRVW--HAAKGKKYVETICKRRRK 526 >gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065] Length = 875 Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust. Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 44/214 (20%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A++ DG++ + TGR S QN+P E Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634 Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I + G +++ AD + IE RVLA ++ ++ + AF +D++ T + Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R K + + Y G + + LN+ T +++ Sbjct: 688 VFKVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734 Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505 DA E + + EN E AIE ++ T R Sbjct: 735 IDAYLERYPNVKLYLENIVEEAIEKGYVSTILNR 768 >gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255] gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255] Length = 932 Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 9/97 (9%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDP----LQIISDC---VRSCVIASEGKKLVVADLA 382 P R H +I+ T S DP + I S+ +R IA EG L+ D + Sbjct: 653 PNTGRVHTSY--VISGASTGRLSSTDPNLQNIPIRSEAGRKIREAFIAEEGNVLLSLDYS 710 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 IE R+LA +A +AF G+D++ T ++ FNV Sbjct: 711 QIELRILAHIAKIDTLKQAFHEGQDIHALTASQMFNV 747 >gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1] Length = 968 Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLV 377 P LP R H T +S+P+ LQ I +R+ IA +G L+ Sbjct: 680 LPYYILPETGRVHTNYSLATTSTGRLSSSEPN-LQNIPIRTPEGRKIRTAFIAPKGCVLL 738 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA +A +AF +D++ T ++ F VA + D R K + Sbjct: 739 SADYSQIELRILAHIANITALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINF 798 Query: 438 ALGYQGGAKAF 448 + Y G AF Sbjct: 799 GIIY--GISAF 807 >gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW] gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW] Length = 987 Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 39/78 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G L+ D + IE R++A MAG +AF G D++ T ++ F V Q Sbjct: 748 IRRAFVARPGHLLLSVDYSQIELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQ 807 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 808 MTSEIRRKAKAINFGIIY 825 >gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 976 Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 30/144 (20%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +TL M++ GR+ T + ++ TGR S QN+P R+ E Sbjct: 687 DTLPGHMDAQGRIH-TSYSMASTTTGRLSSSEPNLQNIP--VRTEE-------------- 729 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R+ +A G LV AD + IE R+LA +A +AF G D++ Sbjct: 730 ---------GRAIRTAFVAPAGHSLVSADYSQIELRILAHIADIPQLKEAFREGLDIHAM 780 Query: 412 TYARSFNVA----PAQVTKDQRAI 431 T + F V P+++ + +AI Sbjct: 781 TASEMFGVPVEGMPSEIRRRAKAI 804 >gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] Length = 877 Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7] gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7] Length = 886 Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-AP 421 +R + S EG K+ +D + IE RVL ++ ++ +AF G+D++ +T R F + +P Sbjct: 645 IRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSP 704 Query: 422 AQVTKDQRAIGKVMELALGY 441 +V+ + R K + + Y Sbjct: 705 EEVSSEMRRRAKAVNFGIVY 724 >gi|332364956|gb|EGJ42724.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK355] Length = 880 Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + GL LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +D ++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADSKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] Length = 940 Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust. Identities = 69/339 (20%), Positives = 129/339 (38%), Gaps = 49/339 (14%) Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LK + ++EE LI KG C+ D P EY D +T ++ Sbjct: 476 LKYKTVRIEE---LIG--PKGRKQLCMRDVPIPQ-------VAEYAAEDADITLKLKNYF 523 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI----VDVERTKLDQELESLTYGLVS 231 P KE + Y +++ L + L ++ V ++ L Q E LT Sbjct: 524 APCLDKE--------GLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELT----- 570 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 L+KL+ ++ G+ + VL + K+ +A + S + K+ Sbjct: 571 --TALKKLEKEIYELAGIKFNINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKM 628 Query: 292 NT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + +VE + L++ G + P P + H +Q +T Sbjct: 629 RSKHPVVEKL---------LEYRGLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGR 679 Query: 349 SITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +++P+ I + +R A +E AD + IE R++A ++ + ++AF Sbjct: 680 LSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIEAF 739 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +G D++ T A+ + + +VT D R K + Y Sbjct: 740 RSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 778 >gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046] Length = 876 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434 L AD + IE RVLA M G++ ++AF+ G D++ T FN+ P +VT R K Sbjct: 648 LFAADYSQIELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKA 707 Query: 435 MELALGY 441 + + Y Sbjct: 708 VNFGIVY 714 >gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75] Length = 893 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 655 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 711 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + K++R+I K + L Y G+K K++ T ++LN Sbjct: 712 GDLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 747 >gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100] gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100] Length = 879 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++C +A EG + D + IE R+LA + ++ L+AF ED++ T F + Sbjct: 649 KTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDEDIHAKTAIMIF----GES 704 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQK 450 R+I K + L Y G K + Sbjct: 705 NYHTRSIAKSINFGLIYGMGYKTLSQ 730 >gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW] gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW] Length = 212 Score = 41.6 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 24/119 (20%) Query: 4 LFIDFETRSPIDLTKC--GICKYAEDVCVILFA-------------FGFDDHPVELWDCV 48 L IDFET + + C G+C+ E+ V+ A F H + D V Sbjct: 8 LAIDFETANEQRASACSIGLCR-VENGRVVRTAEYLIRPPELRFTPFTIAIHGIRPEDVV 66 Query: 49 HDPVMPQV---LKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101 P P + ++ LE ++AHN+ F+ +VL+A + L +P H ++CTLV AR Sbjct: 67 DAPEFPDIWDAMRPELEGA--VLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVAAR 123 >gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] Length = 889 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 524 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 582 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 583 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 640 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 641 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 675 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 676 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 727 >gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397] gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397] Length = 877 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715 >gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] Length = 887 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715 >gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455] gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455] Length = 870 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 505 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 563 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 564 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 621 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 622 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 656 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 657 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 708 >gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585] gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585] Length = 877 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200] Length = 877 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715 >gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae TIGR4] gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] Length = 877 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715 >gi|332638560|ref|ZP_08417423.1| DNA polymerase I [Weissella cibaria KACC 11862] Length = 904 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASE-GKKLVVADLAGIEA 386 S+ H Q +T + DP+ P++I +R + E G +++ AD + IE Sbjct: 627 SKVHTRYLQTLTQTGRLSSVDPNLQNIPVRIEEGRRIRKAFVPREKGWRILSADYSQIEL 686 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 RVLA + G++ +AF GED++ T R F + P Sbjct: 687 RVLAHITGDKHLQEAFINGEDIHAATARRIFGIGP 721 >gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6] gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6] Length = 877 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715 >gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] Length = 875 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A++ DG++ + TGR S QN+P E Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634 Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I + G +++ AD + IE RVLA ++ ++ + AF +D++ T + Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R+ K + + Y G + + LN+ T +++ Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734 Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505 DA E + + EN E A+E ++ T R Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768 >gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916] gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916] Length = 875 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A++ DG++ + TGR S QN+P E Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634 Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I + G +++ AD + IE RVLA ++ ++ + AF +D++ T + Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R+ K + + Y G + + LN+ T +++ Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734 Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505 DA E + + EN E A+E ++ T R Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768 >gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1] gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1] Length = 765 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 350 ITSDPDPLQII---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +SD LQ I + +R I +G L+ D + E R LA M+G++ +KA++ G+ Sbjct: 425 FSSDSPNLQNIPSHNKDIRKMFIPDDGNILIGGDYSQQEPRSLAHMSGDEKMIKAYKNGK 484 Query: 407 DLYVTTYARSFNV 419 D+Y T + + V Sbjct: 485 DIYATIASYVYKV 497 >gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] Length = 889 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 524 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 582 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 583 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 640 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 641 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 675 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 676 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 727 >gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974] gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2] Length = 877 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] Length = 875 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A++ DG++ + TGR S QN+P E Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634 Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I + G +++ AD + IE RVLA ++ ++ + AF +D++ T + Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R+ K + + Y G + + LN+ T +++ Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734 Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505 DA E + + EN E A+E ++ T R Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768 >gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39] gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39] Length = 877 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] Length = 889 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 717 NAKAVNFGVVY 727 >gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113] gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113] Length = 562 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 I VR V+A G +LVVAD +E RVLA ++ + ++ +G DLY T R+F+ Sbjct: 315 IPKVVRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGSGRDLYATLSDRAFS 373 >gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni] Length = 234 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 +SC +A +G + D + IE R+LA + ++ L AF ED++ T F + Sbjct: 92 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIF----GES 147 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R++ K + L Y G K T NL A+L K+ Sbjct: 148 NYETRSVAKSINFGLIYGMGYK-------TLSQNLKIEANLAKS 184 >gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14] gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14] gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375] Length = 877 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715 >gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] Length = 889 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 717 NAKAVNFGVVY 727 >gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] Length = 870 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 505 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 563 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 564 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 621 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 622 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 656 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 657 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 708 >gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] Length = 870 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 505 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 563 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 564 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 621 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 622 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 656 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 657 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 708 >gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1] gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1] Length = 899 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 661 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 717 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + K++R+I K + L Y G+K K++ T ++LN Sbjct: 718 GDLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 753 >gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15] gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15] Length = 640 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 21/135 (15%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR-------S 416 VR +IA EG ++ AD +G E+R++A + + ++ F + + T A Sbjct: 383 VRKSMIAPEGYEIYEADASGQESRLMALRSKDPVMIEIFSKDMNFHSMTGASIIGEDYSD 442 Query: 417 FNVA------PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA---STTGLNLNTFAHLVK 467 F V +QR +GK+ L+ Y+ G KA + A T L + T LV+ Sbjct: 443 FQVKYKAEGDEGGYYTEQRQLGKLTNLSCNYRIGGKALSQKAFLDYDTFLTVQTGLFLVQ 502 Query: 468 T-----NSAPEEWED 477 T P+ WED Sbjct: 503 TFNRTYKGVPQYWED 517 >gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] Length = 940 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 59/295 (20%), Positives = 113/295 (38%), Gaps = 33/295 (11%) Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI----VDV 213 EY D +T ++ P KE + Y +++ L + L ++ V + Sbjct: 506 AEYAAEDADITLKLKNYFTPCLEKE--------GLESLFYDIEMPLIYVLAEMEYTGVTL 557 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 + L Q E LT L+KL+ ++ G+ + VL + K+ +A Sbjct: 558 DTVALKQSSEELT-------TALKKLEKEIYELAGMKFNINSARQVGEVLFDHLKIEEKA 610 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRP 332 + S ++E M S + G L ++ G + P P Sbjct: 611 RKTKTGSYSTSEE-------ILEKMRSKHPVVGKLLEYRGLKKLLSTYIDALPELINPET 663 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEA 386 + H +Q +T +++P+ I + +R A +E AD + IE Sbjct: 664 GKIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIEL 723 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A ++ + ++AF +G D++ T A+ + + +VT D R K + Y Sbjct: 724 RIMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIY 778 >gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis] Length = 924 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQ 428 + E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A+ VT + Sbjct: 690 SQEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAEDVTAND 749 Query: 429 RAIGKVMELALGY 441 R K + + Y Sbjct: 750 RRNAKAVNFGIVY 762 >gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6] gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6] Length = 877 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 645 ENSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRR 704 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 705 NAKAVNFGVVY 715 >gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] Length = 889 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 651 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 707 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + K++R+I K + L Y G+K K++ T ++LN Sbjct: 708 GDLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 743 >gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54] gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54] Length = 877 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715 >gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570] Length = 877 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] Length = 877 Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA- 420 +R + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + Sbjct: 635 LIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIER 694 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P VT + R K + + Y Sbjct: 695 PEDVTPNDRRNAKAVNFGVVY 715 >gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae] Length = 877 Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVY 715 >gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS] gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS] Length = 950 Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 10/125 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PL--QIISDCVRSCVIASEGKKLVVADLAG 383 P R H +Q IT +S+P+ P+ ++ + R+ + ++ G L+ AD + Sbjct: 669 PLTGRVHTSFNQSITATGRLSSSNPNLQNIPIRTELGKEIRRAFIPSNPGNLLLSADYSQ 728 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+ A ++G+ ++AF ED++ T F+ ++T D R K E+ G Sbjct: 729 IELRIAAELSGDPMLIEAFRNHEDIHAATARVIFDT--KEITPDMRR--KAKEVNFGVLY 784 Query: 444 GAKAF 448 G + F Sbjct: 785 GIQPF 789 >gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457] gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457] Length = 575 Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 210 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 268 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 269 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIP- 325 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 326 -----ARLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 361 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 362 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 413 >gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141] Length = 877 Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 35/232 (15%) Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 KL QE+ L G + ++L LF + GL LE +T T VL + P Sbjct: 512 KLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAP 570 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + + L + + +DG++ T ++TGR S QN+P Sbjct: 571 IVKKILDYRQIAKIQSTYVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPA 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 L+Q +R + E L+ +D + IE RVLA Sbjct: 629 ------RLEQ-------------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLA 663 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 664 HISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVY 715 >gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus] Length = 848 Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422 R+ ++SEG + AD + IE R+LA ++G+ LK F+ E D++ T ++ ++ Sbjct: 591 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 650 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +VT R K + ++ Y G +++A+ G+ + H ++ Sbjct: 651 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 692 >gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 889 Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 717 NAKAVNFGVVY 727 >gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 925 Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 7/96 (7%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 PR R H +T +SDP+ LQ I +R IA G L+ AD + Sbjct: 647 PRTGRVHTSFALALTTTGRLSSSDPN-LQNIPIRSEEGRKIRHAFIAEPGHVLLSADYSQ 705 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 IE R++A +A + ++AF G D++ T A+ F V Sbjct: 706 IELRLVAHVACIKGLIQAFHDGADIHAITAAQVFGV 741 >gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] Length = 871 Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 57/113 (50%), Gaps = 5/113 (4%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q +T +++P+ P+++ + +R + E V AD + IE R+ Sbjct: 597 RIHGKFNQTVTATGRISSTEPNLQNIPVRMELGRLIRKVFVPEEDYVFVDADYSQIELRI 656 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 LA +G++ + A++ D++ T ++ F++ +VT +R K + + Y Sbjct: 657 LAHCSGDESLISAYKEARDIHRITASQVFHIPFDEVTDLERRNAKAVNFGIVY 709 >gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302] gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302] Length = 680 Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 448 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 507 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 508 NAKAVNFGVVY 518 >gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] Length = 566 Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 8/90 (8%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT------TY 413 I +RSC A G KLVVAD A +E RVL ++G++ +L DLY + Sbjct: 312 IPRALRSCASADPGWKLVVADGAQLEPRVLTALSGDR-RLAEVAAATDLYARLAEALFSG 370 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 R + P T+D R+ K+ L+ Y G Sbjct: 371 TRYVPLRPGD-TRDDRSRAKIAMLSAMYGG 399 >gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] Length = 1023 Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R IA+ G KLV AD + IE R+LA +A +AF G D++ T + F V Sbjct: 780 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPIKG 839 Query: 421 -PAQVTKDQRAI 431 P+++ + +AI Sbjct: 840 MPSEIRRRAKAI 851 >gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] Length = 880 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q IT ++DP+ I + +R + G V AD + IE RV Sbjct: 606 RIHGSFNQTITATGRISSTDPNLQNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRV 665 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA M+G++ ++++ T D++ T A+ F+V +VT + R K + + Y G AF Sbjct: 666 LASMSGDEKLIESYHTAADIHAATAAQVFHVPLDKVTPELRRNAKAVNFGVVY--GISAF 723 >gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] Length = 889 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 717 NAKAVNFGVVY 727 >gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321] gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321] Length = 877 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA- 420 +R + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + Sbjct: 635 LIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIER 694 Query: 421 PAQVTKDQRAIGKVMELALGY 441 P VT + R K + + Y Sbjct: 695 PEDVTANDRRNAKAVNFGVVY 715 >gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058] Length = 880 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 45/250 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLE--DLT 255 + VER L ++ LESLT Y L + ++L T LF + GL LE T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 256 ETTCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 +T + ++L P A + + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIASIVSKILEYRQISKLQSTYIIGLQEAIAADGKIH-TRYVQDL 613 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372 ++TGR S QN+P L+Q +R + Sbjct: 614 TQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEWA 648 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAI 431 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708 Query: 432 GKVMELALGY 441 K + + Y Sbjct: 709 AKAVNFGVVY 718 >gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300] gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300] Length = 889 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 717 NAKAVNFGVVY 727 >gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 ++ I E L+ AD + IE RVLA + E +AF D++ T +R F V V Sbjct: 679 KNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAFSRDIDIHALTASRLFGVPIESV 738 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + R +GK + + Y G F ++A TGL Sbjct: 739 DDNMRRMGKTINFGIIY--GMSGF-RLARDTGL 768 >gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus] Length = 900 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 5/111 (4%) Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARS 416 I++ R+ ++SEG + AD + IE R+LA ++G+ LK F+ E D++ T ++ Sbjct: 603 ILTISPRTMFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQW 662 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ VT +R K + ++ Y G +++A+ G+ + A ++ Sbjct: 663 KDIPSECVTHVEREQTKKVVYSVVYGAGK---ERLAACLGVTVQEAARFLE 710 >gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] Length = 875 Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A++ DG++ + TGR S QN+P E Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634 Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I + G +++ AD + IE RVLA ++ ++ + AF +D++ T + Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R+ K + + Y G + + LN+ T +++ Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734 Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505 DA E + + EN E A+E ++ T R Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768 >gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] Length = 944 Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 31/158 (19%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + +NS+ GR+ T + ++ TGR S QN+P RS E Sbjct: 659 DALGKQINSNSGRIH-TFYSMISTATGRLSSSNPNLQNIP--IRSEE------------- 702 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + +R +A +G KLV AD + IE R++A +AG Q AF +D++ Sbjct: 703 ----------GNAIRRAFVARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQDIHS 752 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 T + F + K+ R K + + Y G AF Sbjct: 753 ITAEQIF--CTQSLDKNLRRKAKSINFGIIY--GMSAF 786 >gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334] gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334] Length = 889 Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRR 716 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 717 NAKAVNFGVVY 727 >gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] Length = 1025 Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVI-ASEGKKLVVADLAGIEA 386 R H +Q I ++DP+ LQ I + +R+ I E + L+ D + +E Sbjct: 749 RIHTTFEQTIAATGRLSSADPN-LQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A + ++ ++AF +G D + + + + QVT DQR+ K M L Y Sbjct: 808 RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAY 862 >gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143] gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143] Length = 877 Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 645 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 704 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 705 NAKAVNFGVVY 715 >gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu Length = 864 Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422 R+ ++SEG + AD + IE R+LA ++G+ LK F+ E D++ T ++ ++ Sbjct: 607 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 666 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +VT R K + ++ Y G +++A+ G+ + H ++ Sbjct: 667 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 708 >gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster] Length = 2059 Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust. Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 41/266 (15%) Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 +++ + TL Q+ V Q L+ L +V+ ++K++T ++ + G + Sbjct: 1653 IEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVA---VMKKVETKIYEQHGSRFNLGSSQA 1709 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR-TG 317 +VL ++K R+ SR + KLN+ + + LG + +G Sbjct: 1710 VAKVLGLHRKA--------KGRVTTSRQVLEKLNSPISHL-----------ILGYRKLSG 1750 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP----------LQIISDCVR-S 366 + + P + R H Q IT+ T S +P +Q+ SD V S Sbjct: 1751 LLAKSIQPLMECCQADRIH---GQSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHIS 1807 Query: 367 C----VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 C + E + L+ AD +E R+LA M+ ++ L+ ++ +DL++ A + + Sbjct: 1808 CRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEES 1867 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 +VT+D R K + + Y G ++ Sbjct: 1868 EVTQDLRNSTKQVCYGIVYGMGMRSL 1893 >gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4] gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4] Length = 992 Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I++ G KL+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 747 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 806 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 807 MPSEVRRRAKAI 818 >gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus] Length = 866 Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422 R+ ++SEG + AD + IE R+LA ++G+ LK F+ E D++ T ++ ++ Sbjct: 609 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 668 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +VT R K + ++ Y G +++A+ G+ + H ++ Sbjct: 669 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 710 >gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus] gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus] Length = 866 Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422 R+ ++SEG + AD + IE R+LA ++G+ LK F+ E D++ T ++ ++ Sbjct: 609 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 668 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +VT R K + ++ Y G +++A+ G+ + H ++ Sbjct: 669 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 710 >gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b] gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b] Length = 938 Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 39/78 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G LV D + IE R+LA +A +AF G+D++ T + F+V + Sbjct: 698 IREAFVAEPGNVLVSLDYSQIELRILAHIADIDALRQAFRDGQDIHAMTASEMFDVPLDE 757 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 758 MTPEIRRQAKAINFGVIY 775 >gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pyogenes M49 591] Length = 418 Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 186 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 245 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 246 NAKAVNFGIVY 256 >gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] Length = 889 Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 717 NAKAVNFGVVY 727 >gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 997 Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ I + +LV AD + IE RVLA +A +AF G D++ T + FNV Sbjct: 754 IRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 813 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 814 MPSEVRRRAKAI 825 >gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131] gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131] Length = 880 Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster] gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster] gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster] gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster] Length = 2059 Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust. Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 41/266 (15%) Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 +++ + TL Q+ V Q L+ L +V+ ++K++T ++ + G + Sbjct: 1653 IEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVA---VMKKVETKIYEQHGSRFNLGSSQA 1709 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR-TG 317 +VL ++K R+ SR + KLN+ + + LG + +G Sbjct: 1710 VAKVLGLHRKA--------KGRVTTSRQVLEKLNSPISHL-----------ILGYRKLSG 1750 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP----------LQIISDCVR-S 366 + + P + R H Q IT+ T S +P +Q+ SD V S Sbjct: 1751 LLAKSIQPLMECCQADRIH---GQSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHIS 1807 Query: 367 C----VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 C + E + L+ AD +E R+LA M+ ++ L+ ++ +DL++ A + + Sbjct: 1808 CRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEES 1867 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 +VT+D R K + + Y G ++ Sbjct: 1868 EVTQDLRNSTKQVCYGIVYGMGMRSL 1893 >gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7] Length = 885 Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 647 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 703 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 ++ K++R+I K + L Y G+K K++ T + LN Sbjct: 704 GELAKEKRSIAKSINFGLVYGMGSK---KLSETLNIPLN 739 >gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] Length = 889 Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 717 NAKAVNFGVVY 727 >gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277] gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277] Length = 863 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 4/92 (4%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 VR C A V D + IE R+LA + ++ L+AF ED++ T F A Q Sbjct: 632 VRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALLRAFANDEDIHARTAISIFGSAEGQ 691 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 RA+ K + L Y G+ S T Sbjct: 692 ----NRAVAKSINFGLIYGMGSSKLANQVSIT 719 >gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] Length = 936 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 19/144 (13%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + S+ L+ AD + IE R++A + ++ ++AF+ G+D++ T ++ F V Sbjct: 694 AIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEAFKAGKDIHTATASKLFKVPL 753 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV + R K + Y G F +A G++ E Sbjct: 754 EQVDESMRRQAKTANFGIIY--GISGF-GLAQRLGIS---------------RSEAIATI 795 Query: 482 CRWMQENHPEHAIEDLFIGTACER 505 + QE H A D IG A E+ Sbjct: 796 QAYFQEFHAIKAYMDRVIGQAREQ 819 >gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24] Length = 905 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 667 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 723 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 ++ K++R+I K + L Y G+K K++ T + LN Sbjct: 724 EELAKEKRSIAKSINFGLVYGMGSK---KLSETLNIPLN 759 >gi|167763751|ref|ZP_02435878.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC 43183] gi|167697867|gb|EDS14446.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC 43183] Length = 163 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95 H + L D PV P V +E + +T+VAHN F+ + LKA F +D P + + C Sbjct: 55 HGLTLADTSRSPVFPAVWQEIAPRIEGLTLVAHNKAFDESCLKAVFRMYGMDYPDYDFRC 114 Query: 96 TLVLARS--NGLP 106 TL +R GLP Sbjct: 115 TLQASRRAIKGLP 127 >gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613] Length = 875 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 44/214 (20%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A++ DG++ + TGR S QN+P E Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634 Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I + G +++ AD + IE RVLA ++ ++ + AF +D++ T + Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R+ K + + Y G + + LN+ T +++ Sbjct: 688 VFKVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734 Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505 DA E + + EN E A+E ++ T R Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNR 768 >gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] Length = 880 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1] gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus pyogenes SSI-1] Length = 880 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 880 Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] Length = 880 Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5] gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5] Length = 880 Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T ++DP+ P+++ +R + SE L+ AD + Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA ++ ++ ++AF D++ T F+VA +VT R K + + Y Sbjct: 661 IELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVY 718 >gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis] Length = 880 Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T ++DP+ P+++ +R + SE L+ AD + Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA ++ ++ ++AF D++ T F+VA +VT R K + + Y Sbjct: 661 IELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVY 718 >gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642] gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY] gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis] gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] Length = 880 Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T ++DP+ P+++ +R + SE L+ AD + Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA ++ ++ ++AF D++ T F+VA +VT R K + + Y Sbjct: 661 IELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVY 718 >gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] Length = 871 Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 24/129 (18%) Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P +E+ ++ I D D D + SC Sbjct: 605 VTTTGRLSSTEPNLQNIPIKYEMGKEIRKVF------IPQDSD------DILISC----- 647 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 D + IE RVLA +A ++ + AFE D++ T + F V +VT R+ Sbjct: 648 -------DYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNA 700 Query: 433 KVMELALGY 441 K + + Y Sbjct: 701 KAVNFGIVY 709 >gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] Length = 877 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASE-GKKLVVADLAGIEA 386 + H +Q +T ++DP+ P+++ +R + SE G + AD + IE Sbjct: 601 GKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADYSQIEL 660 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ ++AF D++ T F+V +VT + R K + + Y Sbjct: 661 RVLAHIANDEKLIEAFIEDMDIHTKTAMEVFHVNANEVTSNMRRHAKAVNFGIVY 715 >gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] Length = 875 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 44/214 (20%) Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A++ DG++ + TGR S QN+P E Sbjct: 594 AIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGRE------------------ 634 Query: 357 LQIISDCVRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I + G +++ AD + IE RVLA ++ ++ + AF +D++ T + Sbjct: 635 -------IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASE 687 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R K + + Y G + + LN+ T +++ Sbjct: 688 VFKVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNI--------TRKEAKQY 734 Query: 476 EDA--ENF--CRWMQENHPEHAIEDLFIGTACER 505 DA E + + EN E A+E ++ T R Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVNTILNR 768 >gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] Length = 880 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] Length = 880 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] Length = 880 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 880 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] Length = 871 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 24/129 (18%) Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P +E+ ++ I D D D + SC Sbjct: 605 VTTTGRLSSTEPNLQNIPIKYEMGKEIRKVF------IPQDSD------DILISC----- 647 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 D + IE RVLA +A ++ + AFE D++ T + F V +VT R+ Sbjct: 648 -------DYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNA 700 Query: 433 KVMELALGY 441 K + + Y Sbjct: 701 KAVNFGIVY 709 >gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195] Length = 880 Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T ++DP+ P+++ +R + SE L+ AD + Sbjct: 601 PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA ++ ++ ++AF D++ T F+VA +VT R K + + Y Sbjct: 661 IELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVY 718 >gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] Length = 880 Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R +A++G L+VAD +E R+LA +A + L AF+ G D + T Sbjct: 883 IRQAFVAAQGNSLIVADYGQLELRILAHLANRKSMLDAFKAGGDFHSRT 931 >gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] Length = 524 Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 292 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 351 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 352 NAKAVNFGVVY 362 >gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 871 Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 24/129 (18%) Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372 + TGR S QN+P +E+ ++ I D D D + SC Sbjct: 605 VTTTGRLSSTEPNLQNIPIKYEMGKEIRKVF------IPQDSD------DILISC----- 647 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 D + IE RVLA +A ++ + AFE D++ T + F V +VT R+ Sbjct: 648 -------DYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNA 700 Query: 433 KVMELALGY 441 K + + Y Sbjct: 701 KAVNFGIVY 709 >gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 893 Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 37/213 (17%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L LF + GL + T+T + +KL PQA + ++ ++ + A LK +T ++ Sbjct: 548 KQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQA-PIVDHILQYRQLAKLK-STYID 605 Query: 297 AMNS-----DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + S D ++ LQ L ++TGR S QN+P RS E Sbjct: 606 GLLSVIYPKDSKIHTRFLQTL--TQTGRLSSVDPNLQNIPM--RSEE------------- 648 Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R+ + S ++ AD + IE RVLA + G++ KAF GED++ Sbjct: 649 ----------GRLIRTAFVPSHPNWQIFGADYSQIELRVLAHVTGDKNMQKAFLNGEDIH 698 Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 T F +A A V +R K + + Y Sbjct: 699 AETARAVFGLADDAVVDPLKRRTAKAVNFGIVY 731 >gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism HF4000_APKG10H12] Length = 891 Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVVADLAGI 384 P R H +Q + +SDP+ P++ + +R +A +G L+ AD + I Sbjct: 615 PDTGRVHTSFNQAVAATGRLSSSDPNLQNIPIRTPLGREIRRAFVARDGHVLISADYSQI 674 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA ++ + +AF ED++ T F + R K++ AL Y G Sbjct: 675 ELRVLAHLSADTALTQAFIRNEDIHDKTALHVFGPDSGLDAHELRRRAKIINYALLY--G 732 Query: 445 AKAF 448 AF Sbjct: 733 KTAF 736 >gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511] gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511] Length = 730 Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 19/143 (13%) Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 N DGR+ G+ G + T R S Q LP + TS+P Sbjct: 376 NKDGRVHGSFNATG-TETTRLSSNNPNMQQLP------------------AKTSNPKRFD 416 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 R A E L+ D + +E R+LA AG++ +AF G DL+ T + + Sbjct: 417 YQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWG 476 Query: 419 VAPAQVTKDQRAIGKVMELALGY 441 + +V + R K + + Y Sbjct: 477 MPVDKVPAEFRKKAKAVNFGIAY 499 >gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] Length = 806 Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 574 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 633 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 634 NAKAVNFGIVY 644 >gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317] Length = 877 Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 645 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRR 704 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 705 NAKAVNFGVVY 715 >gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] Length = 932 Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G LV D + IE R+LA +AG AF G D++ T + F+V + Sbjct: 692 IREAFVAEPGHVLVSLDYSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDE 751 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 752 MTPEVRRQAKAINFGVIY 769 >gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] Length = 880 Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLSSDYSQIELRVLAHISGDKHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 34/122 (27%) Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P+A+ + RSA++K ++A SDGR+ G + G + TGR Sbjct: 98 VPEAVLILEYLTLGKRSAMVK--GWLDAYESDGRIHGYVNSNG-TVTGR----------- 143 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDC-VRSCVIASEGKKLVVADLAGIEARV 388 +TH S+P+ QI S RSC + +G+KLV D +G+E R+ Sbjct: 144 -------------MTH------SNPNMAQIPSGAEYRSCFVVPQGRKLVGVDASGLELRM 184 Query: 389 LA 390 LA Sbjct: 185 LA 186 >gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] Length = 920 Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASEGKKLVVADLAG 383 P+ H +Q +T +SDP+ LQ I +R C I AD + Sbjct: 642 PQTGHIHTSFNQALTATGRLSSSDPN-LQNIPVRTDDGKEIRKCFIPEPDCLFFSADYSQ 700 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R++A ++ ++ ++AF G D++ T A+ ++ VT QR K + Y Sbjct: 701 IELRIMAHLSEDENMMEAFRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIY 758 >gi|319900813|ref|YP_004160541.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] gi|319415844|gb|ADV42955.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes P 36-108] Length = 165 Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95 H + L D PV P V +E + + +VAHN F+ + LKA F +D P + + C Sbjct: 55 HGLTLADTAQAPVFPDVWREISPRIEGLPLVAHNKAFDESCLKAVFRTYGMDYPDYDFYC 114 Query: 96 TLVLARS--NGLP 106 TL +R GLP Sbjct: 115 TLQASRRVIKGLP 127 >gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] Length = 883 Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 38/254 (14%) Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 ++ ++E+T + E G ++L LF + L + T+T + +K Sbjct: 518 RLAEIEQTIFQEAGEEFNIG------SPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEK 571 Query: 269 LTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 L P A V N N + S+ ++ L++ ++ + T ++TGR S Sbjct: 572 LAPDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNL 631 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385 QN+P RS E +R I S E ++ +D + IE Sbjct: 632 QNIP--VRSEE-----------------------GRLIRQAFIPSHENWQIWSSDYSQIE 666 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGG 444 RVLA + G++ +AF GED++ TT R F +A VT + R K + + Y G Sbjct: 667 LRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVY--G 724 Query: 445 AKAFQKMASTTGLN 458 + +A+ TG++ Sbjct: 725 ISDY-GLANNTGIS 737 >gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] Length = 928 Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G ++ AD + IE R+ A MA +AF GED++ T + F + Sbjct: 688 IRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHAATAQQLFG----E 743 Query: 424 VTKDQRAIGKVMELALGY 441 V +D R K + A+ Y Sbjct: 744 VNRDTRGRAKTINFAILY 761 >gi|189465280|ref|ZP_03014065.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM 17393] gi|189437554|gb|EDV06539.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM 17393] Length = 164 Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFN---LDIPIHRWIC 95 H + L D PV P V +E + + +VAHN F+ + LKA F LD P + + C Sbjct: 55 HGLTLADTAEAPVFPVVWQEIAPLIEGLPLVAHNKGFDESCLKAVFKTYCLDYPDYEFHC 114 Query: 96 TLVLARS--NGLPS 107 TL AR GLPS Sbjct: 115 TLSTARRRIKGLPS 128 >gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS] gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS] Length = 880 Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQ 428 + E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + Sbjct: 646 SHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAADVTAND 705 Query: 429 RAIGKVMELALGY 441 R K + + Y Sbjct: 706 RRNAKAVNFGIVY 718 >gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] Length = 878 Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I SE ++ AD + IE RVLA +A ++ + AF G D++ T F+V+ Sbjct: 638 IRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKE 697 Query: 423 QVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716 >gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 883 Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 38/254 (14%) Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 ++ ++E+T + E G ++L LF + L + T+T + +K Sbjct: 518 RLAEIEQTIFQEAGEEFNIG------SPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEK 571 Query: 269 LTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 L P A V N N + S+ ++ L++ ++ + T ++TGR S Sbjct: 572 LAPDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNL 631 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385 QN+P RS E +R I S E ++ +D + IE Sbjct: 632 QNIP--VRSEE-----------------------GRLIRQAFIPSHENWQIWSSDYSQIE 666 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGG 444 RVLA + G++ +AF GED++ TT R F +A VT + R K + + Y G Sbjct: 667 LRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVY--G 724 Query: 445 AKAFQKMASTTGLN 458 + +A+ TG++ Sbjct: 725 ISDY-GLANNTGIS 737 >gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 893 Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 37/213 (17%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L LF + GL + T+T + +KL PQA + ++ ++ + A LK +T ++ Sbjct: 548 KQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQA-PIVDHILQYRQLAKLK-STYID 605 Query: 297 AMNS-----DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + S D ++ LQ L ++TGR S QN+P RS E Sbjct: 606 GLLSVIYPKDSKIHTRFLQTL--TQTGRLSSVDPNLQNIPM--RSEE------------- 648 Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +R+ + S ++ AD + IE RVLA + G++ KAF GED++ Sbjct: 649 ----------GRLIRTAFVPSHPNWQIFGADYSQIELRVLAHVTGDKNMQKAFLNGEDIH 698 Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 T F +A A V +R K + + Y Sbjct: 699 AETARAVFGLADDAVVDPLKRRTAKAVNFGIVY 731 >gi|281424653|ref|ZP_06255566.1| exonuclease [Prevotella oris F0302] gi|281401241|gb|EFB32072.1| exonuclease [Prevotella oris F0302] Length = 162 Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 6/61 (9%) Query: 46 DCVHDPVMPQVLK--EALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100 D H P+ P+V + E+L D+ +VAHN F+ + LKA C+ +D P + + CTL + Sbjct: 61 DTNHAPIFPEVWRKVESLI-VDLPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYCTLAQS 119 Query: 101 R 101 R Sbjct: 120 R 120 >gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 876 Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +S+ ++ AD + IE RVLA + ++ +AF ED++ T + FNV P Sbjct: 636 IRKAFKSSDDNNVIFSADYSQIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPD 695 Query: 423 QVTKDQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 696 EVDSLMRRQAKAVNFGIVY 714 >gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] Length = 878 Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEGKKLVV-ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I SE ++ AD + IE RVLA +A ++ + AF G D++ T F+V+ Sbjct: 638 IRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKE 697 Query: 423 QVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716 >gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] Length = 893 Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 36/190 (18%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L LF + GL + T+T + +KL QA + ++ ++ + A LK +T VE Sbjct: 548 KQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQA-PIVDHILQYRQLAKLK-STYVE 605 Query: 297 AM-----NSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + + D ++ LQ L ++TGR S QN+P + EE QI Sbjct: 606 GLLTVVHDQDSKIHTRFLQTL--TQTGRLSSVDPNLQNIPMRT---EEGRQI-------- 652 Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 R+ + SE ++V AD + IE RVLA M G++ +AF GED++ Sbjct: 653 --------------RTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGEDIH 698 Query: 410 VTTYARSFNV 419 T F + Sbjct: 699 AETARAVFGL 708 >gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] Length = 574 Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + R + E QI ++ P+ +Q I +R A EG V++D + IE R+ A Sbjct: 305 KNGRVYPEFKQIGAVTGRMSSAHPN-IQNIHRDMRGIFKAEEGNTFVISDFSQIELRIAA 363 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 + L AF+ G+D++ T + ++TK++R + K + L Y AK + Sbjct: 364 EYVKDPLMLDAFKKGKDMHRYTASVVLGKKEEEITKEERQLAKAINFGLIYGISAKGLAE 423 Query: 451 MA 452 A Sbjct: 424 YA 425 >gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 798 Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 27/45 (60%) Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 A G KLV ADL+ IE R+ AWMA E L+ + D++ +T A Sbjct: 681 ARPGYKLVSADLSQIELRIAAWMANEPEMLRIYRADGDIHASTGA 725 >gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana] Length = 1050 Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +AS G LVVAD +E R+LA + G + ++AF+ G D + T + N+ P Sbjct: 783 IRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRT---AMNMYP 837 >gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S] gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S] Length = 928 Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G ++ AD + IE R+ A MA +AF GED++ T + F + Sbjct: 688 IRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHAATAQQLFG----E 743 Query: 424 VTKDQRAIGKVMELALGY 441 V +D R K + A+ Y Sbjct: 744 VNRDTRGRAKTINFAILY 761 >gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana] gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana] gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana] Length = 1049 Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +AS G LVVAD +E R+LA + G + ++AF+ G D + T + N+ P Sbjct: 782 IRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRT---AMNMYP 836 >gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1] gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1] Length = 608 Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 9/93 (9%) Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 VR C +A G+ +V D E RVLA +A ++ ++AF+ DL+ T A Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIQAFKDNADLHQIT---------A 424 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + R +GK++ A + G A T Sbjct: 425 DASGVDRKVGKMVNFAYVFGSGPSTIAAQAGIT 457 >gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] Length = 829 Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R A EG + AD + IE R+LA++A + A +G DL+ T ++ F + Sbjct: 580 IRKIFTAKEGHHFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQIFKT--DK 637 Query: 424 VTKDQRAIGKVMELALGY 441 +T D R K + + Y Sbjct: 638 ITPDLRNKAKAVNFGIVY 655 >gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 996 Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust. Identities = 99/416 (23%), Positives = 156/416 (37%), Gaps = 74/416 (17%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWIC---TLVLARSN-GLPS-ALK 110 LK LE+ V +AHN ++ VL A + +D+ PI + TL R+N GL LK Sbjct: 470 LKPLLEDDAVLKIAHNMKYDLLVL-ARYGVDVAPIEDTMLISYTLDTGRNNHGLDELTLK 528 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +G S G+ I F + DR EY D VT Sbjct: 529 HLGHENIPFSAVAGSGRNFIG-FAR-----VALDRAT-----------EYATEDADVTLR 571 Query: 171 IFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +++ L+P + E+ + + RG +D A+ L+ + +L+ Sbjct: 572 LWRALKPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRLSGEFAQDMARLEA 631 Query: 221 ELESL---TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277 ++ L T+ L S ++L LF + GL T T +S + F Sbjct: 632 DIFDLAGETFNLGSP----KQLGDILFGKMGLPGAKKTATGAWSTSASVLEDLANEGNDF 687 Query: 278 NNRMRASRSAVLKLNTLVEAM-----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 R+ R +T +A+ GR+ T L A+ TGR S QN+P Sbjct: 688 ARRILDWRQLSKLKSTYTDALPGFVNKETGRVH-TSYALAATTTGRLSSSDPNLQNIPVR 746 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + + + +R +AS G L+ AD + IE R+LA + Sbjct: 747 NEAGRK-------------------------IRKAFVASPGHVLISADYSQIELRLLAHI 781 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A KAF G D++ T + F V + + R K + + Y G AF Sbjct: 782 ADIPQLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIY--GISAF 835 >gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I Length = 891 Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 653 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 709 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + K++R+I K + L Y G+K K++ T ++LN Sbjct: 710 EYLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 745 >gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695] gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695] Length = 892 Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IAS + L+ D + IE R+LA + ++ ++AF G D+++ T F Sbjct: 654 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG--- 710 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 + K++R+I K + L Y G+K K++ T ++LN Sbjct: 711 EYLAKEKRSIAKSINFGLVYGMGSK---KLSETLNISLN 746 >gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232] gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232] Length = 880 Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + R Sbjct: 648 EDAVLLGSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGIVY 718 >gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] Length = 948 Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 31/151 (20%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L +A+N D GR+ + +GA +TGR S QN+P P Sbjct: 661 DALQQAINPDTGRVHTSYSLVGA-QTGRLSSTDPNLQNIP-------------IRTP--- 703 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + G L+ AD + IE R+ A MA +AF GED++ Sbjct: 704 ---------IGRQIREAFVPENGNVLLAADYSQIELRLAAHMADVPELKEAFAEGEDIHA 754 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 T + + +D RA K + A+ Y Sbjct: 755 RTAREMYG----EADRDTRARAKTINFAILY 781 >gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba] gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba] Length = 2043 Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 38/229 (16%) Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + KL+T ++ + G + T +VL ++K N R+ SR + K+N+ + Sbjct: 1671 MRKLETKIYEQHGSRFNLGSSQTVAKVLGLHRKA--------NGRVTTSRQVLEKINSPI 1722 Query: 296 EAMNSDGRLRGTLQFLGASRT-GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + LG + G + + P R H Q IT+ T S Sbjct: 1723 SQL-----------ILGYRKVAGLLAKSIQPLLKCCEADRIH---GQSITYTATGRISMT 1768 Query: 355 DP----------LQIISDCVR-SC----VIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +P +Q+ SD +R +C V E + L+ AD +E R+LA M+ ++ L Sbjct: 1769 EPNLQNVAKEFCIQVGSDALRIACRLPFVPKDEDRCLLSADFCQLEMRILAHMSQDKALL 1828 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 + + +DL++ A + ++V++D R K + + Y G ++ Sbjct: 1829 EVMNSPQDLFIAIAAHWNKIEESEVSQDLRNSTKHVCYGIVYGMGMRSL 1877 >gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus] Length = 467 Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 5/105 (4%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422 R+ ++SEG + AD + IE R+LA ++G+ LK F+ E D++ T ++ ++ Sbjct: 210 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 269 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +VT R K + ++ Y G +++A+ G+ + H ++ Sbjct: 270 RVTHMDREQTKKVVYSVVYGAGK---ERLAACLGVTVLEATHFLE 311 >gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] Length = 261 Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R C I K AD + IE R++A ++ ++ ++AF G D++ T ++ + A + Sbjct: 22 IRKCFIPEPSCKFFSADYSQIELRIMAHLSCDENMMEAFREGFDIHRATASKIWKEAMDE 81 Query: 424 VTKDQRAIGKVMELALGY 441 VT QR K + Y Sbjct: 82 VTDSQRKQAKQANFGIIY 99 >gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353] Length = 880 Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 47/251 (18%) Query: 211 VDVERTKL-------DQELESLT---YGLVSSSRCL---EKLKTWLFLETGLHLEDLTET 257 + VER L ++ LESLT Y L + ++L T LF + L LE +T Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMRLPLEYTKKT 554 Query: 258 -----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T VL + P ++ R + S+ + L EA+ +DG++ T Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYR-QISKLQSTYIIGLQEAIAADGKIH-TRYVQD 612 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371 ++TGR S QN+P L+Q +R + Sbjct: 613 LTQTGRLSSVDPNLQNIPV------RLEQ-------------------GRLIRKAFVPEW 647 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRA 430 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + A+ VT + R Sbjct: 648 ADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDRR 707 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 708 NAKAVNFGVVY 718 >gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG] gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG] Length = 608 Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 9/93 (9%) Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 VR C +A G+ +V D E RVLA +A ++ ++AF+ DL+ T A Sbjct: 374 MVRRCFLADSGQLMVSVDYQAQELRVLAALANDRTMIQAFKDNADLHQIT---------A 424 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + R +GK++ A + G A T Sbjct: 425 DASGVDRKVGKMVNFAYVFGSGPSTIAAQAGIT 457 >gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7] gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7] Length = 870 Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 + H +Q +T ++DP+ P++ + E LV D + IE RV Sbjct: 596 GKIHTIYNQALTQTGRLSSTDPNLQNIPVKTPEGKLIRKAFVPEYDYLVSFDYSQIELRV 655 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +AG + +KAF +D++ T + F V QV R K + + Y G F Sbjct: 656 LAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFGIIY--GMSDF 713 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 +A G+++ +A F + EN+PE Sbjct: 714 -GLAEQVGVSVG----------------EAREFIKRYFENYPE 739 >gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] Length = 945 Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 I +R +A G L+ AD + IE R+ A MA +AF GED++ T F Sbjct: 701 IGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMADVPALKEAFAAGEDIHARTAMEMFGT 760 Query: 420 APAQVTKDQRAIGKVMELALGY 441 V +D R K + A+ Y Sbjct: 761 ----VDRDTRGRAKTINFAILY 778 >gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367] gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367] Length = 886 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 37/238 (15%) Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 Q+ ++E+T ++ E G ++L LF + GL + T+T + +K Sbjct: 521 QLAEIEQTIYNEAGEEFNIG------SPKQLGHILFEKMGLPVIKKTKTGYSTAVGVLEK 574 Query: 269 LTPQAIQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 L +A + N ++ + A ++ + L++ ++ D + T ++TGR S Sbjct: 575 LAAEA-PIAENILKYRKIAKIQSTYVEGLLKVIHPDDQKVHTRYLQTLTQTGRLSSVDPN 633 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384 QN+P R+ E +R + S ++ +D + I Sbjct: 634 LQNIP--VRNEE-----------------------GRAIRKAFVPSHPDWEIFSSDYSQI 668 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGY 441 E RVLA M+ ++ +AF G+D++ T R F + P +VT + R K + + Y Sbjct: 669 ELRVLAHMSHDKQMQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVNFGIVY 726 >gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana] Length = 1067 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +AS G LVVAD +E R+LA + G + ++AF+ G D + T + N+ P Sbjct: 782 IRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRT---AMNMYP 836 >gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum] gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania infantum JPCM5] Length = 1257 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 19/160 (11%) Query: 316 TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S CV P QNLPR + I + + + ++ R C +A+ G Sbjct: 969 TGRLS-CVEPNLQNLPR--------NGIAAAVAGNDAEEDGEEDLLG--FRRCFVATGGC 1017 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ D IE RVLA + G+ + A T D++ F P V+ ++R++ K Sbjct: 1018 VLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP--VSTEERSLAKR 1075 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK--TNSAP 472 + + Y G K +A+ G+ ++ H+ TN+ P Sbjct: 1076 VVFGVLYGAGPK---TLATHMGVTVDRALHITSLLTNAFP 1112 >gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1257 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 19/160 (11%) Query: 316 TGRWSGCVFPP-QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374 TGR S CV P QNLPR + I + + + ++ R C +A+ G Sbjct: 969 TGRLS-CVEPNLQNLPR--------NGIAAAVAGNDAEEDGEEDLLG--FRRCFVATGGC 1017 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ D IE RVLA + G+ + A T D++ F P V+ ++R++ K Sbjct: 1018 VLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP--VSTEERSLAKR 1075 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVK--TNSAP 472 + + Y G K +A+ G+ ++ H+ TN+ P Sbjct: 1076 VVFGVLYGAGPK---TLATHMGVTVDRALHITSLLTNAFP 1112 >gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564] gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564] Length = 877 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 35/275 (12%) Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 +LE L EQ L ++ + G V + D+ KL QE+ L G + Sbjct: 469 QLELLYDMEQPLAFVLAKMEIAGITVKKETLLEMQAENDLVIEKLTQEIYELA-GEEFNI 527 Query: 234 RCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L LF + GL LE +T T VL + P ++ + R A + Sbjct: 528 NSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQST 587 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L + + +DG++ T ++TGR S QN+P L+Q Sbjct: 588 YVIG-LQDWILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPV------RLEQ------- 632 Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +R + E L+ +D + IE RVLA ++ ++ +KAF+ G D Sbjct: 633 ------------GRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGAD 680 Query: 408 LYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGY 441 ++ +T R F + ++ VT + R K + + Y Sbjct: 681 IHTSTAMRVFGIERSEDVTANDRRNAKAVNFGVVY 715 >gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] Length = 1012 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA+ G KLV AD + IE R+L+ +A AF+ G D++ T + F V Sbjct: 769 IRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIHAMTASEMFGVPVKD 828 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 + + R K + + Y G AF Sbjct: 829 MPGEVRRRAKAINFGIIY--GISAF 851 >gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2] gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2] Length = 1008 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 23/149 (15%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R IA +G KLV AD + IE R+LA +A +AF D++ T + F V Sbjct: 765 IRRAFIAEKGHKLVSADYSQIELRLLAEIADIPVLKQAFHDKLDIHAMTASEMFGVPVKD 824 Query: 421 -PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN----SAPEEW 475 PA+V + +AI G G AF +A+ G+ +K + Sbjct: 825 MPAEVRRRAKAIN------FGIIYGISAF-GLANQLGIPREEAGAYIKKYFERFPGIRAY 877 Query: 476 EDA-ENFCRWMQENHPEHAIEDLFIGTAC 503 DA +FCR EH + G C Sbjct: 878 MDATRDFCR-------EHGYVETLFGRKC 899 >gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43] gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43] Length = 980 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA--- 420 +R+ +A G L+ AD + IE RVLA +A +AF G D++ T + F V Sbjct: 737 IRTAFVAEPGNVLISADYSQIELRVLAHVANIPQLTQAFADGVDIHAMTASEMFGVPIEG 796 Query: 421 -PAQVTKDQRAI 431 P++V + +AI Sbjct: 797 MPSEVRRRAKAI 808 >gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] Length = 858 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 + +R IA +G K++ AD + IE R+LA +A +AF G+D++ T + F V Sbjct: 606 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV 663 >gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis] Length = 932 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII------SDCVRSCVIASE-GKKLVVADLAGIE 385 R H +Q +T +++P+ LQ I +R IA E G L+ AD + IE Sbjct: 650 GRIHTSFNQSVTATGRLSSTEPN-LQNIPVRLEQGRHIRKAFIAPEPGWTLLAADYSQIE 708 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R+LA ++ + AF +D++ T + F+V VT++ R K + + Y Sbjct: 709 LRILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMGNVTREMRRRAKAVNFGIVY 764 >gi|294673890|ref|YP_003574506.1| exonuclease [Prevotella ruminicola 23] gi|294473761|gb|ADE83150.1| exonuclease [Prevotella ruminicola 23] Length = 163 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 51 PVMPQVLKEALENTD-VTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGLP 106 P+ P+V K+ + + +VAHN F+ + LKA C+ +D P +++ CT V +R Sbjct: 66 PIFPEVWKQIEPMIEGLPLVAHNKAFDESCLKAVFRCYQMDYPDYQFYCTCVASRKAFPN 125 Query: 107 SALKAVGEALKLSSQKMEEGKELIA 131 +A + KL ++E +A Sbjct: 126 AANHQLHTISKLCGYELENHHHALA 150 >gi|329964271|ref|ZP_08301372.1| exonuclease [Bacteroides fluxus YIT 12057] gi|328525576|gb|EGF52619.1| exonuclease [Bacteroides fluxus YIT 12057] Length = 168 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95 H + L D PV P V +E + + +VAHN F+ + LKA F ++D P + + C Sbjct: 55 HGLTLADTAGAPVFPDVWREIAPRIEGLPLVAHNKAFDESCLKAVFRTYSMDYPDYDFYC 114 Query: 96 TLVLARS--NGLP 106 TL +R GLP Sbjct: 115 TLQASRRVIKGLP 127 >gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC 27759] gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC 27759] Length = 115 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L K G +Y E + ++LFA+ D+ PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60 Query: 59 EALEN 63 ALE+ Sbjct: 61 LALED 65 >gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] Length = 873 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 + H +Q +T ++DP+ P++ + E LV D + IE RV Sbjct: 599 GKIHTIYNQALTQTGRLSSTDPNLQNIPVKTAEGKLIRKAFIPEYDYLVSFDYSQIELRV 658 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A + +KAF +D++ T + F V +V R K + + Y G F Sbjct: 659 LAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNFGIIY--GMSDF 716 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 +A G+ +N +A NF + EN+PE Sbjct: 717 G-LAEQVGVPVN----------------EARNFIKRYFENYPE 742 >gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125] gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125] Length = 876 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVVA-DLAGIEA 386 + H +Q +T ++DP+ P+++ +R + SE ++A D + IE Sbjct: 600 GKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVPSEKDWFILAADYSQIEL 659 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA A ++ ++AF D++ T F+V+ +VT + R K + + Y Sbjct: 660 RVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAVNFGIVY 714 >gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 558 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 QN R R E T +T+ LQI +R V+A G LVVAD A +E Sbjct: 280 QNWVRDGRFRPEFHAHGTVTGRWVTNGGGALQI-PKVIRRAVVADPGHCLVVADAAQLEP 338 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 RVLA ++ + ++ +DLY + R+F+ AQ Sbjct: 339 RVLAAISRDPGLMEVAARADDLYQSVSERAFSGDRAQ 375 >gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 889 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 33/211 (15%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL + T+T T VL+ K+ +P + R + S+ + Sbjct: 544 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 602 Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ ++ DGR+ LQ L A TGR S QN+P + +++ + + Sbjct: 603 LLDVIDKRDGRIHTRYLQTLTA--TGRLSSVDPNLQNIPARTEEGKQIRKAF------VP 654 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 S PD + SC D + IE RVLA ++ + +AF+TG D++ Sbjct: 655 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 696 Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441 T + F+++ +VT QR K + + Y Sbjct: 697 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 727 >gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] Length = 1020 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 11/143 (7%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G KLV AD + IE R+LA +A +AF G D++ T + F V Sbjct: 777 IRRAFVAVPGTKLVSADYSQIELRLLAEIAEIPALRQAFRDGIDIHAMTASEMFGVPVEG 836 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 + + R K + + Y G AF +A+ G+ + +K +E Sbjct: 837 MPSEVRRRAKAINFGIIY--GISAF-GLANQLGIPRDEAGQYIK-----RYFERFPGIRA 888 Query: 484 WMQENHP---EHAIEDLFIGTAC 503 +M E EH + G C Sbjct: 889 YMDETRAYCREHGYVETLFGRRC 911 >gi|196004142|ref|XP_002111938.1| hypothetical protein TRIADDRAFT_55451 [Trichoplax adhaerens] gi|190585837|gb|EDV25905.1| hypothetical protein TRIADDRAFT_55451 [Trichoplax adhaerens] Length = 1053 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 28/111 (25%) Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-YGLVSSSRCLEKLKTWLFL 245 YL+ N RG L IVD + L Q LESLT YGL+SS Sbjct: 430 YLESDRNRRG----------LKDIVDEAKNSLRQHLESLTSYGLLSSE------------ 467 Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 +D+T+++ S + + P IQ F NR + S+SA LK N L + Sbjct: 468 ----DKDDVTDSSTLEASSVDLNINPTIIQCFQNRQQ-SQSAYLKKNHLYD 513 >gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265] gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265] Length = 940 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 10/125 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAG 383 PR R H +Q IT +S+P+ P++ + +R I ++ + L++ AD + Sbjct: 659 PRTGRVHTSFNQHITATGRLSSSNPNLQNIPIRTPLGREIRKAFIPTDPRNLLLSADYSQ 718 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+ A ++G+ ++AF ED++ T F+ +T D R K E+ G Sbjct: 719 IELRIAAEISGDGKLIEAFRNREDIHSATARVIFDT--PDITPDMRR--KAKEVNFGVLY 774 Query: 444 GAKAF 448 G + F Sbjct: 775 GIQPF 779 >gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] Length = 875 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEA 386 S+ H Q +T ++DP+ P+++ +R + S E L AD + IE Sbjct: 599 SKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEDWILFSADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA M+ +Q ++AF G D++ T F+V+ +V + R K + + Y Sbjct: 659 RVLAHMSEDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVY 713 >gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] Length = 885 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + S EG ++ +D + IE RVLA + G+ +AF+ ED++ +T R F + A Sbjct: 644 IRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDA 703 Query: 423 -QVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 704 SEVTPNIRRQAKAVNFGIVY 723 >gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 1015 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDC------VRSCVI-ASEGKKLVVADLAGIEA 386 R H +Q I ++DP+ LQ I + +R+ I E + L+ D + +E Sbjct: 739 RIHTTFEQTIAATGRLSSADPN-LQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 797 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R++A + ++ ++AF +G D + + + + QV+ DQR+ K M L Y Sbjct: 798 RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYGLAY 852 >gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 883 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 38/254 (14%) Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 ++ ++E+T + E G ++L LF + L + T+T + +K Sbjct: 518 RLAEIEQTIFQEAGEEFNIG------SPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEK 571 Query: 269 LTPQAIQVFN--NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 L P A V N N + S+ ++ L++ ++ + T ++TGR S Sbjct: 572 LAPDAPIVQNVLNYRQISKLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGRLSSVDPNL 631 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385 QN+P RS E +R + S E ++ +D + IE Sbjct: 632 QNIP--VRSEE-----------------------GRLIRQAFVPSHEDWQIWSSDYSQIE 666 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGG 444 RVLA + G++ +AF GED++ TT R F +A VT + R K + + Y G Sbjct: 667 LRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVY--G 724 Query: 445 AKAFQKMASTTGLN 458 + +A+ TG++ Sbjct: 725 ISDY-GLANNTGIS 737 >gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J] gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J] Length = 881 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423 ++ +SE L+ +D + IE RVLA ++G+Q + AF D++ +T R F + + Sbjct: 642 KAFTASSEDALLLSSDYSQIELRVLAHISGDQHLITAFNEDADIHTSTAMRVFAIDKEED 701 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 702 VTANDRRNAKAVNFGIVY 719 >gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 887 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 33/211 (15%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL + T+T T VL+ K+ +P + R + S+ + Sbjct: 542 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 600 Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ ++ DGR+ LQ L A TGR S QN+P + +++ + + Sbjct: 601 LLDVIDERDGRIHTRYLQTLTA--TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VP 652 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 S PD + SC D + IE RVLA ++ + +AF+TG D++ Sbjct: 653 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 694 Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441 T + F+++ +VT QR K + + Y Sbjct: 695 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 725 >gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans] Length = 903 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + SE G ++ AD + IE RVLA ++G++ +AF TG D++ T F V+ Sbjct: 663 IRKAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSED 722 Query: 423 QVTKDQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 723 RVDARMRRQAKAVNFGIIY 741 >gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4] gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4] Length = 885 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + S EG ++ +D + IE RVLA + G+ +AF+ ED++ +T R F + A Sbjct: 644 IRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDA 703 Query: 423 -QVTKDQRAIGKVMELALGY 441 +VT + R K + + Y Sbjct: 704 SEVTPNIRRQAKAVNFGIVY 723 >gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14] Length = 855 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPA 422 +R +A +GKKL+VAD + +E R+LA + + ++AF G D + T + NVA A Sbjct: 584 IRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYDNVAKA 643 >gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 886 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 33/211 (15%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL + T+T T VL+ K+ +P + R + S+ + Sbjct: 541 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 599 Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ ++ DGR+ LQ L A TGR S QN+P + +++ + + Sbjct: 600 LLDVIDERDGRIHTRYLQTLTA--TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VP 651 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 S PD + SC D + IE RVLA ++ + +AF+TG D++ Sbjct: 652 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 693 Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441 T + F+++ +VT QR K + + Y Sbjct: 694 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 724 >gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] Length = 871 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 9/140 (6%) Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPD----PLQIISD--CVRSCVIASEGKKLV 377 FP P R H Q +T + +P+ P+++ ++ V E L+ Sbjct: 579 FPGYIHPETGRVHTVFKQAVTATGRLSSVEPNLQNIPIRMEEGRRIRKAFVPGDENHILL 638 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 D + I+ R LA M+G++ ++ F G D++ T + F V QVT D R K + Sbjct: 639 SCDYSQIDLRSLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNF 698 Query: 438 ALGYQGGAKAFQKMASTTGL 457 + Y G F +A TG+ Sbjct: 699 GIVY--GISDF-GLARGTGV 715 >gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] Length = 937 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA+ G L+ AD + IE R+ A MA +AF G+D++ T F + Sbjct: 697 IRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDDIHAATAIELFG----E 752 Query: 424 VTKDQRAIGKVMELALGY 441 V +D R K + ++ Y Sbjct: 753 VNRDTRGKAKTVNFSILY 770 >gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C] gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C] Length = 1023 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 23/175 (13%) Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVE----AMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P+A V + S+ LK N + A N DG + G+ G T Sbjct: 636 PEAKHVAELLLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYNSTGTEST---------- 685 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 R S ++ + Q+ +S DP R EG ++ D + +E Sbjct: 686 ----RLSANNPNMQQL-----SSKVGDPRRFDYKYPIKRLFRTRFEGGGMLQLDYSALEM 736 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 R+L +A ++ +AF GED++ T + + + V KD R K + + Y Sbjct: 737 RILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRAKSVNFGIAY 791 >gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 887 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 33/211 (15%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL + T+T T VL+ K+ +P + R + S+ + Sbjct: 542 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 600 Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ ++ DGR+ LQ L A TGR S QN+P +R+ EE QI + Sbjct: 601 LLDVIDERDGRIHTRYLQTLTA--TGRLSSVDPNLQNIP--TRT-EEGKQIRKAF---VP 652 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 S PD + SC D + IE RVLA ++ + +AF+TG D++ Sbjct: 653 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 694 Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441 T + F+++ +VT QR K + + Y Sbjct: 695 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 725 >gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 886 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 33/211 (15%) Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL + T+T T VL+ K+ +P + R + S+ + Sbjct: 541 KQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYR-QISKIQSTYVKG 599 Query: 294 LVEAMNS-DGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ ++ DGR+ LQ L A TGR S QN+P + +++ + + Sbjct: 600 LLDVIDERDGRIHTRYLQTLTA--TGRLSSVDPNLQNIPTRTEEGKQIRKAF------VP 651 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 S PD + SC D + IE RVLA ++ + +AF+TG D++ Sbjct: 652 SSPD------GYIYSC------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAH 693 Query: 412 TYARSFNVAPA-QVTKDQRAIGKVMELALGY 441 T + F+++ +VT QR K + + Y Sbjct: 694 TAMKIFHLSSVDEVTSLQRRRAKAVNFGIVY 724 >gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] Length = 882 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I SE G ++ AD + IE R+LA ++ ++ + AF+ G D++ T F V+ Sbjct: 642 IREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDVFGVSEE 701 Query: 423 QVTKDQRAIGKVMELALGY 441 +VT R K + + Y Sbjct: 702 EVTSLMRRQAKAVNFGIVY 720 >gi|329956618|ref|ZP_08297191.1| DNA polymerase III, epsilon subunit family protein [Bacteroides clarus YIT 12056] gi|328523990|gb|EGF51066.1| DNA polymerase III, epsilon subunit family protein [Bacteroides clarus YIT 12056] Length = 163 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95 H + L D PV P V +E + +T+VAHN F+ + LKA F +D P + + C Sbjct: 55 HGLTLADTACAPVFPTVWQEIAPRIEGLTLVAHNKAFDESCLKAVFRTYGMDYPDYDFRC 114 Query: 96 TLVLARS--NGLP 106 TL +R GLP Sbjct: 115 TLQASRRAIKGLP 127 >gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] Length = 937 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +A GK LV D + IE R+LA +A +AF G D++ T + FNV Sbjct: 697 IREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMFNV 752 >gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] Length = 885 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 35/229 (15%) Query: 221 ELESLTYGLVSSSRCL---EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277 E+E YGL + ++L LF + L T+T + + L Q ++V Sbjct: 522 EIEKNIYGLAGEEFNINSPKQLSEILFEKMMLDPVKKTKTGYSTDVEVLEVLAAQGVEV- 580 Query: 278 NNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ R L T VE + +S+ R+ T G + TGR S QN+P + Sbjct: 581 AEKILEYRGYTKLLTTYVEPLPKLADSENRIHTTFHQNGTA-TGRLSSSNPNIQNIPVKT 639 Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 D+ I +R ++ EG + D + IE RVLA ++ Sbjct: 640 ------DEGIK-------------------IRRGFVSEEGWSFISFDYSQIELRVLAELS 674 Query: 394 GEQWKLKAFETGEDLY-VTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 ++ + A++ +DL+ +T F V++++R+I KV+ ++ Y Sbjct: 675 EDETLILAYQKDKDLHDLTARKLFFKTDEEPVSREERSIAKVINFSILY 723 >gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131] gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131] Length = 937 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +A GK LV D + IE R+LA +A +AF G D++ T + FNV Sbjct: 697 IREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMFNV 752 >gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus] Length = 822 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPA 422 R+ ++SEG + AD + IE R+LA ++G+ LK F+ E D++ T ++ ++ Sbjct: 609 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 668 Query: 423 QVTKDQRAIGKVMELALGYQGG 444 +VT R K + ++ Y G Sbjct: 669 RVTHMDREQTKKVVYSVVYGAG 690 >gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] Length = 937 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +A GK LV D + IE R+LA +A +AF G D++ T + FNV Sbjct: 697 IREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMFNV 752 >gi|271967935|ref|YP_003342131.1| DNA polymerase I - 3'-5' exonuclease-like protein [Streptosporangium roseum DSM 43021] gi|270511110|gb|ACZ89388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains-like protein [Streptosporangium roseum DSM 43021] Length = 531 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 29/163 (17%) Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-DLY 409 TS LQI +R V+A EG LVVAD A +E RVLA MAG+ +A G+ DLY Sbjct: 292 TSGGGALQI-PKVMRQVVVADEGWTLVVADAAQLEPRVLAAMAGDGGLARA--AGQIDLY 348 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 AQ +R K+ L+ Y G T+G A V Sbjct: 349 QAL---------AQAFGGERDSAKIAMLSAMYGG----------TSGDAPKLLA--VMRQ 387 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 P ++ E+ R +E + ++G C + WR+ Sbjct: 388 RFPRAYQFVEDAARSGEEGK----LVRSWLGRTCPQPSAGWRE 426 >gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] Length = 937 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +A GK LV D + IE R+LA +A +AF G D++ T + FNV Sbjct: 697 IREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMFNV 752 >gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] Length = 950 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKK-LVVADLAG 383 P + H +Q IT +S+P+ P++ + +R IAS + L+ AD + Sbjct: 669 PATGKLHTSFNQHITATGRLSSSNPNLQNIPIRTELGKEIRKAFIASTNRNFLLSADYSQ 728 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+ A ++G++ ++AF ED++ T F+ VT D R K + + Y Sbjct: 729 IELRIAAELSGDKKLIEAFRNQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLY 784 >gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] Length = 924 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R IA+ G L+ AD + IE R++A +AG +AF G+D++ T ++ F V Sbjct: 678 IREAFIAAPGHLLISADYSQIELRLVAHVAGITALRQAFAEGKDIHAITASQVFGV 733 >gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] Length = 885 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 363 CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-A 420 +R + S G ++ +D + +E RVLA + G++ + F+ GED++ +T R F++ A Sbjct: 643 LIRKAFVPSHAGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPA 702 Query: 421 PAQVTKDQRAIGKVMELALGY 441 A++ ++ R K + + Y Sbjct: 703 DAEIDRNMRRRAKAVNFGIVY 723 >gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ) [Danio rerio] Length = 2239 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 5/130 (3%) Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 PD S +R + G ++ D + +E R+LA ++ ++ L +G D++ + Sbjct: 1961 PDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIA 2020 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A V PA V + R K + + Y GAK+ + G+ N A ++T + Sbjct: 2021 AEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKS---LGEQMGIEENDAACYIETFKS-- 2075 Query: 474 EWEDAENFCR 483 + +NF R Sbjct: 2076 RYNGIQNFLR 2085 >gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] Length = 879 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423 ++ + +SE L+ +D + IE RVLA ++G++ + AF+ D++ +T R F + + Sbjct: 640 KAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMRVFGIEKEED 699 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 700 VTPNDRRNAKAVNFGIVY 717 >gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] Length = 933 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA G LV D + IE R+LA +A +AF G D++ T + F+V + Sbjct: 693 IRGAFIAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDE 752 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 753 MTPEIRRQAKAINFGVIY 770 >gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88] gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88] Length = 882 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEAR 387 R H +Q +T +++P+ I + VR + + E ++ AD + IE R Sbjct: 607 RIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREVRKVFVPNYENSIILSADYSQIELR 666 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA +A ++ + AF+ D++ T + F V +VT + R K + + Y G + Sbjct: 667 VLAHIADDENLINAFKHHADIHTKTASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIGDFS 726 Query: 448 FQK 450 K Sbjct: 727 LAK 729 >gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 570 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R V+A G KLVVAD A +E R+L +A +Q ++ A G+DLY V+ Sbjct: 322 LRGAVVADPGWKLVVADAAQLEPRILTGLAQDQ-RMAAAGRGQDLYTGI------VSAGA 374 Query: 424 VTKDQRAIGKVMELALGY 441 VT +RA KV L Y Sbjct: 375 VT--ERAQAKVAMLGAMY 390 >gi|315609065|ref|ZP_07884035.1| exonuclease [Prevotella buccae ATCC 33574] gi|315249269|gb|EFU29288.1| exonuclease [Prevotella buccae ATCC 33574] Length = 163 Score = 39.7 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 51 PVMPQVLKEALENT-DVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101 PV P V + E D+ +VAHNS F+ + LKA C+ +D P +R+ TL AR Sbjct: 66 PVFPHVWERITELIGDLPLVAHNSPFDESCLKAVFRCYQMDYPDYRFYDTLRTAR 120 >gi|224537614|ref|ZP_03678153.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus DSM 14838] gi|224520756|gb|EEF89861.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus DSM 14838] Length = 164 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95 H + L D P+ P V +E + + ++AHN F+ + LKA F +LD P + + C Sbjct: 55 HGLTLADTAKAPIFPTVWQEIAPLIEGLPLIAHNKGFDESCLKAVFRTYSLDYPDYEFHC 114 Query: 96 TLVLARS--NGLPS 107 TL AR GLP+ Sbjct: 115 TLSTARRRIKGLPN 128 >gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum] gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum] Length = 1588 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 13/140 (9%) Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPT--SITSDPDPLQIISDCVRSCVIASEGK 374 GR GC +H +I H P ++ D D + C R + S+G Sbjct: 1308 GRIFGCYV----------THTATGRITMHEPNLQNVAKDFDIDGVEVSC-RKAFVPSQGH 1356 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 +V AD +E RVLA ++ ++ D++ A+ N++ +VT++ R K Sbjct: 1357 VMVSADFCQLELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQRAKQ 1416 Query: 435 MELALGYQGGAKAFQKMAST 454 + + Y G+KA + +T Sbjct: 1417 IIYGIIYGMGSKALAEQLNT 1436 >gi|288926311|ref|ZP_06420235.1| exonuclease [Prevotella buccae D17] gi|288336916|gb|EFC75278.1| exonuclease [Prevotella buccae D17] Length = 163 Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 51 PVMPQVLKEALENT-DVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101 PV P V + E D+ +VAHNS F+ + LKA C+ +D P +R+ TL AR Sbjct: 66 PVFPHVWERITELIGDLPLVAHNSPFDESCLKAVFRCYQMDYPDYRFYDTLRTAR 120 >gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis] gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis] Length = 963 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA+ G L+VAD +E R+LA +A + L+AF+ G D + T + N+ P Sbjct: 693 IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRT---AMNMYP 747 >gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] Length = 928 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A GKKLV AD + IE R++A +A AF G D++ T ++ F V Sbjct: 689 IRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRDAFAHGADIHAITASQVFGVPLDG 748 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + R K + + Y G AF +A+ G+ Sbjct: 749 IDPALRRRAKAINFGIIY--GISAF-GLAAQLGI 779 >gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera] Length = 1118 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA+ G L+VAD +E R+LA +A + L AF+ G D + T + N+ P Sbjct: 849 IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRT---AMNMYP 903 >gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] Length = 886 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + SE G ++ AD + IE RVLA ++G+ +AF D++ T F V P Sbjct: 646 IRKVFVPSEEGWFILSADYSQIELRVLAHISGDPGLQEAFLHDMDIHTKTAMDVFGVGPD 705 Query: 423 QVTKDQRAIGKVMELALGY 441 QV + R K + + Y Sbjct: 706 QVDANMRRSAKAVNFGIVY 724 >gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] Length = 882 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 27/208 (12%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTL 294 ++L LF E L + T+T + +KL P+A V N + S+ + L Sbjct: 537 KQLGHILFEEMKLPVIKKTKTGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVVGL 596 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A++S + T ++TGR S QN+P ++ Q Sbjct: 597 LDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQ------------- 643 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 + V + EG ++ +D + IE RVLA + ++ AF+ G+D++ T Sbjct: 644 -----------AFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 692 Query: 415 RSFNVAPA-QVTKDQRAIGKVMELALGY 441 R F++ A +VT + R K + + Y Sbjct: 693 RIFHLNSAEEVTPNIRRQAKAVNFGIVY 720 >gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 354 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 + +R IA +G K++ AD + IE R+LA +A +AF G+D++ T + F V Sbjct: 101 GNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV 159 >gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio] Length = 2593 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 5/130 (3%) Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 PD S +R + G ++ D + +E R+LA ++ ++ L +G D++ + Sbjct: 2315 PDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIA 2374 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A V PA V + R K + + Y GAK+ + G+ N A ++T + Sbjct: 2375 AEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKS---LGEQMGIEENDAACYIETFKS-- 2429 Query: 474 EWEDAENFCR 483 + +NF R Sbjct: 2430 RYNGIQNFLR 2439 >gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R +A++G L+VAD +E R+LA +A + L AF+ G D + T Sbjct: 883 IRQAFVAAQGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT 931 >gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis] Length = 2242 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Query: 341 QIITHLPTSITSDPDPLQIISDC---VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 ++ H P T D IS C VR + + G ++ AD +E R+LA + + Sbjct: 2029 RVSMHEPNLQTIPRDFKSDISGCILSVRMAFVPASGNIMLSADFCQLELRILAHFSQDPV 2088 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 K D++ + AR QV D R K + A+ Y GAK+ + S T Sbjct: 2089 LCKLLHGKGDIFKSIAARLNKTTEEQVDDDMRQRAKQLCYAMIYGMGAKSLAETLSAT 2146 >gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa] gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa] Length = 834 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R IA+ G L+VAD +E RVLA +A + L AF+ G D + T Sbjct: 565 IRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFKAGGDFHSRT 613 >gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] Length = 878 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKV 434 L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + P VT + R K Sbjct: 650 LLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKA 709 Query: 435 MELALGY 441 + + Y Sbjct: 710 VNFGIVY 716 >gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905] gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905] Length = 875 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGI 384 + S+ H Q +T ++DP+ P+++ +R + S E L AD + I Sbjct: 597 KDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSNENWILFSADYSQI 656 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA M+ ++ ++AF G D++ T F+V+ +V + R K + + Y Sbjct: 657 ELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVY 713 >gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] Length = 608 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R C A G L+ D + +E RV A ++ + +G D++ T F Sbjct: 380 LRHCFQADPGHVLISCDFSQVEVRVTAALSRDPALTDVLASGVDIHDATARLLFGDG--- 436 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 TKDQR + K Y GGA+A T Sbjct: 437 FTKDQRTLAKRATFGTIYGGGARALMNATGAT 468 >gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] Length = 933 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G LV D + IE R+LA +A +AF G D++ T + F+V + Sbjct: 693 IREAFVAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDE 752 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 753 MTPEIRRKAKAINFGVIY 770 >gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] Length = 933 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G L+ D + IE R+LA +A +AF G D++ T + F+V Q Sbjct: 693 IREAFVAEPGNVLLSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDQ 752 Query: 424 VTKDQRAIGKVMELALGY 441 +T + R K + + Y Sbjct: 753 MTPEVRRRAKAINFGVIY 770 >gi|294675436|ref|YP_003576052.1| exonuclease [Prevotella ruminicola 23] gi|294473646|gb|ADE83035.1| exonuclease [Prevotella ruminicola 23] Length = 163 Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 51 PVMPQVLKEALENTD-VTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101 PV P+V K+ D + +VAHN F+ + LKA C+ +D P + + CT V +R Sbjct: 66 PVFPEVWKQIEPLIDGLPLVAHNKSFDESCLKAVFRCYQMDYPDYPFYCTCVASR 120 >gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] Length = 878 Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423 ++ V +E + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + + Sbjct: 639 KAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTED 698 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 699 VTPNDRRNAKAVNFGIVY 716 >gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus] Length = 239 Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 35/129 (27%) Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L N+K+ A+ V R +LK ++A+ DGR+ G + GA TGR Sbjct: 134 LKQNEKIAEAAL-VLEYLTLQKRYGMLK--NWLDAVQDDGRIHGRVNTCGAV-TGR---- 185 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV-RSCVIASEGKKLVVADL 381 +TH S P+ QI SD + R C + EG KLV D Sbjct: 186 --------------------MTH------SSPNMAQIPSDSLYRQCFVVPEGSKLVGIDA 219 Query: 382 AGIEARVLA 390 +G+E R+LA Sbjct: 220 SGLELRMLA 228 >gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum] Length = 1076 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 30/178 (16%) Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L+ A S+GR+ + F + TGR QN+ + D +I L Sbjct: 788 LQNLLRACRSNGRIHAS--FTTFTGTGRVQSVHPNVQNVQK--------DALIDSL---- 833 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 VRS +A G LV AD + +E RVLA ++ ++ K F G D + Sbjct: 834 ------------SVRSLFVAPPGFVLVSADYSQLELRVLAGLSKDEGLCKLFRNGGDFFQ 881 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 T R V D++ + K + A+ Y GA + TT N HL+++ Sbjct: 882 TVTDRWNANTSIDVPLDRQKV-KQLCYAIIYGMGAITLGERIGTTKQNAQ---HLIES 935 >gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 877 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 599 PDTGKVHTMFNQTLTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQ 658 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF+ D++ T F+V+ +VT + R K + + Y Sbjct: 659 IELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVY 716 >gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16] gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus] gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16] Length = 876 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 597 PDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQ 656 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF+ D++ T F+V+ +VT + R K + + Y Sbjct: 657 IELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVY 714 >gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] Length = 882 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 27/208 (12%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTL 294 ++L LF E L + T+T + +KL P+A V N + S+ + L Sbjct: 537 KQLGHILFEEMKLPVIKKTKTGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGL 596 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A++S + T ++TGR S QN+P ++ Q Sbjct: 597 LDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQ------------- 643 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 + V + EG ++ +D + IE RVLA + ++ AF+ G+D++ T Sbjct: 644 -----------AFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 692 Query: 415 RSFNVAPA-QVTKDQRAIGKVMELALGY 441 R F++ A +VT + R K + + Y Sbjct: 693 RIFHLNSAEEVTPNIRRQAKAVNFGIVY 720 >gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1034 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA+ G L+VAD +E R+LA +A + L AF+ G D + T + N+ P Sbjct: 765 IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRT---AMNMYP 819 >gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 878 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423 ++ V +E + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + + Sbjct: 639 KAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTED 698 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 699 VTPNDRRNAKAVNFGIVY 716 >gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] Length = 875 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 331 RPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGI 384 + S+ H Q +T ++DP+ P+++ +R + S E L AD + I Sbjct: 597 KDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEDWILFSADYSQI 656 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 E RVLA M+ ++ ++AF G D++ T F+V+ +V + R K + + Y Sbjct: 657 ELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKAVNFGIVY 713 >gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] Length = 878 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 599 PDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQ 658 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF+ D++ T F+V+ +VT + R K + + Y Sbjct: 659 IELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVY 716 >gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 878 Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ- 423 ++ V +E + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + + Sbjct: 639 KAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTED 698 Query: 424 VTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 699 VTPNDRRNAKAVNFGIVY 716 >gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I Length = 876 Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + SE L+ AD + IE RVLA +A + ++AF G D++ T F+V+ Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEE 695 Query: 423 QVTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 696 DVTANMRRQAKAVNFGIVY 714 >gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] Length = 888 Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 10/143 (6%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLVV-ADLAG 383 P+ + H Q +T +S+P+ P+++ + +R + + + AD + Sbjct: 607 PQTGKLHTTFHQAVTATGRLSSSEPNLQNVPIRLDAGRKIRKFFVPCKPDNFIFSADYSQ 666 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ- 442 IE R+LA +A + + AF +D++ T + F VA +VT + R K + + Y Sbjct: 667 IELRILAHIAQDNNLMDAFAKKQDIHTRTASEVFGVAMDEVTPEMRGRAKAVNFGIVYGI 726 Query: 443 ---GGAKAFQKMASTTGLNLNTF 462 G AK + G +N + Sbjct: 727 SDFGLAKDIKVTRKEAGRYINNY 749 >gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13] Length = 877 Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 13/119 (10%) Query: 336 HEELDQIITHLPTSIT-----SDPDP-LQII------SDCVRSCVIAS-EGKKLVVADLA 382 HE+ ++I T ++T S DP LQ I +R I S E + AD + Sbjct: 597 HEDSNKIHTRFNQALTQTGRLSSIDPNLQNIPVRLEEGRKIREAFIPSHEDWVIFAADYS 656 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A ++ ++AF+ D++ T F+V+ +VT + R K + + Y Sbjct: 657 QIELRVLAHIANDEKLIEAFKEDADIHTKTAMDVFHVSEDEVTSNMRRQAKAVNFGIVY 715 >gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] Length = 862 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R + EG LV +D +E R+LA MA +KAF+ D++ T F+ + + Sbjct: 623 IRKAFLPEEGCVLVSSDYHQVELRILAHMAKVPNLIKAFQNEMDIHSQTAMDLFDCSLEE 682 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 VT QR K + + Y G F +AS G++ Sbjct: 683 VTPLQRRQAKTVNFGIVY--GISDF-GLASQLGVS 714 >gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] Length = 888 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 27/149 (18%) Query: 294 LVEAMNSDGRLRGT-LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 +++ ++ DG++ +Q L + TGR S QN+P + ++ Q + S Sbjct: 604 ILDYIHQDGKVHSRFIQTL--TTTGRLSSADPNLQNIPIRTEEGRKIRQAF------VPS 655 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 PD VI S +D + IE RVLA ++G+ +AF+ +D++ T Sbjct: 656 HPD-----------WVIFS-------SDYSQIELRVLAHVSGDPHLQEAFKENKDIHTAT 697 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGY 441 A+ F+ ++KD+R K + + Y Sbjct: 698 AAKVFHKDEKDISKDERRQAKAVNFGIVY 726 >gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 562 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R+CV A G KLVVAD A +E RVL ++G++ +L DLY Sbjct: 309 IPKVLRTCVRADSGWKLVVADAAQLEPRVLTALSGDR-RLADVAAATDLYA 358 >gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 876 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + SE L+ AD + IE RVLA +A + ++AF G D++ T F+V+ Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEE 695 Query: 423 QVTKDQRAIGKVMELALGY 441 VT + R K + + Y Sbjct: 696 DVTANMRRQAKAVNFGIVY 714 >gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773] Length = 893 Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII---SD---CVRSCVIASEGK-KLVVADLAG 383 + S+ H Q +T + DP+ LQ I SD +R+ + S+ ++ AD + Sbjct: 614 KDSKIHTRFLQTLTQTGRLSSVDPN-LQNIPMRSDEGRQIRTAFVPSQPDWQIFGADYSQ 672 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGY 441 IE RVLA M G++ +AF GED++ T F + + A V QR K + + Y Sbjct: 673 IELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIVY 731 >gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group] Length = 1000 Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +D +I++ + + P L+ +R +A+ G L+VAD +E R+LA +A + Sbjct: 707 IDSLISNFILPLQNQP-ALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSM 765 Query: 399 LKAFETGEDLYVTT 412 L AF+ G D + T Sbjct: 766 LDAFKAGGDFHSRT 779 >gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 887 Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 27/208 (12%) Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN--NRMRASRSAVLKLNTL 294 ++L LF E L + T+T + +KL P+A V N + S+ + L Sbjct: 542 KQLGHILFEEMKLPVIKKTKTGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGL 601 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++A++S + T ++TGR S QN+P ++ Q Sbjct: 602 LDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQ------------- 648 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 + V + EG ++ +D + IE RVLA + ++ AF+ G+D++ T Sbjct: 649 -----------AFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 697 Query: 415 RSFNVAPA-QVTKDQRAIGKVMELALGY 441 R F++ A +VT + R K + + Y Sbjct: 698 RIFHLNSAEEVTPNIRRQAKAVNFGIVY 725 >gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa] gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa] Length = 834 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R IA+ G L+VAD +E R+LA +A + L AF+ G D + T + N+ P Sbjct: 565 IRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRT---AMNMYP 619 >gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 926 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +A GK+L+ AD + IE R++A +A + AF G D++ T ++ F V Sbjct: 687 IRHAFVAEPGKRLISADYSQIELRLVAHVAEIEGLRDAFADGADIHAITASQVFGV 742 >gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10] gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10] Length = 928 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 25/128 (19%) Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++L +N D + T L A+ TGR S QN+P + + + Sbjct: 638 DSLFAHINRDTKRVHTSFSLAATTTGRLSSTEPNLQNIPIRTEAGRQ------------- 684 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +R IA G LV AD + +E R+LA +A + +AF G D++ Sbjct: 685 ------------IREVFIAEPGHVLVAADYSQVELRLLAHIANVESLKQAFRDGTDIHAM 732 Query: 412 TYARSFNV 419 T + F V Sbjct: 733 TASEVFGV 740 >gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942] gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942] Length = 880 Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAGIEAR 387 + H +Q +T ++DP+ P+++ +R + SE L+ AD + IE R Sbjct: 605 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELR 664 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA ++ ++ ++AF D++ T F+VA +VT R K + + Y Sbjct: 665 VLAHISKDENLIEAFTNDMDVHTKTAMDVFHVAQDEVTPAMRRQAKAVNFGIVY 718 >gi|239980380|ref|ZP_04702904.1| DNA polymerase I [Streptomyces albus J1074] gi|291452241|ref|ZP_06591631.1| DNA polymerase I [Streptomyces albus J1074] gi|291355190|gb|EFE82092.1| DNA polymerase I [Streptomyces albus J1074] Length = 562 Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 I +R V+A G +LVVAD +E R+LA ++G++ ++ +DLY R+F Sbjct: 312 IPKVIRRAVVADPGWRLVVADADQLEPRILAAVSGDRALMEVASRPDDLYQAVSDRAFQ 370 >gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756] gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756] Length = 966 Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 3/105 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA +GK L+ AD + IE R+LA + +AF+ G D++ T + F+ Sbjct: 723 IRKAFIAPQGKVLISADYSQIELRLLAHIGDIPQLKRAFQEGLDIHAMTASEMFDTPIEG 782 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + R K + + Y G AF +A+ G+ +KT Sbjct: 783 MDPMIRRRAKAINFGIVY--GISAF-GLANQLGIPQGEAGAYIKT 824 >gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42] gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42] Length = 879 Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 6/114 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAGIEAR 387 + H +Q +T ++DP+ P+++ +R + SE L+ AD + IE R Sbjct: 604 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELR 663 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA ++ ++ ++AF D++ T F+V+ +VT+ R K + + Y Sbjct: 664 VLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAKAVNFGIVY 717 >gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537] Length = 896 Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 94/239 (39%), Gaps = 39/239 (16%) Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 QIVDVE+ ++ E ++S + +L LF + GL + T+T + +K Sbjct: 529 QIVDVEKAIYEEAGEEFN---INSPK---QLGILLFEKMGLPVIKRTKTGYSTAVEVLEK 582 Query: 269 LTPQA---IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT-LQFLGASRTGRWSGCVF 324 L QA + R A + L D ++ LQ L ++TGR S Sbjct: 583 LADQAPIVAYILQYRQLAKLKSTYIDGLLAVVYRQDSKIHTRYLQTL--TQTGRLSSVDP 640 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAG 383 QN+P + + + +R + SE ++ AD + Sbjct: 641 NLQNIPMRTEAGRQ-------------------------IRKAFVPSEPNWQIFGADYSQ 675 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGY 441 IE RVLA M G++ +AF ED++ T F + A +T QR K + + Y Sbjct: 676 IELRVLAHMTGDKNLQRAFLNDEDIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVY 734 >gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group] Length = 1032 Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R +A+ G L+VAD +E R+LA +A + L AF+ G D + T Sbjct: 763 IRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRT 811 >gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] Length = 950 Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQI-ISDCVRSCVIASEGKKLVV-ADLAGIEA 386 R H +Q IT +S+P+ P++ + +R I S + L++ AD + IE Sbjct: 672 GRLHTSFNQSITATGRLSSSNPNLQNIPIRTDLGKEIRRAFIPSNPENLLLSADYSQIEL 731 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RV A ++G+ ++AF ED++ T F+ +VT D R K E+ G G + Sbjct: 732 RVAAELSGDPMLIEAFRNHEDIHAATARVIFDT--DEVTSDMRR--KAKEVNFGVLYGIQ 787 Query: 447 AF 448 F Sbjct: 788 PF 789 >gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302] Length = 882 Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 701 EDVTSNMRRQAKAVNFGIVY 720 >gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208] gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3] Length = 879 Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 6/114 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAGIEAR 387 + H +Q +T ++DP+ P+++ +R + SE L+ AD + IE R Sbjct: 604 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELR 663 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA ++ ++ ++AF D++ T F+V+ +VT+ R K + + Y Sbjct: 664 VLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAKAVNFGIVY 717 >gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] Length = 885 Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + SE G ++ AD + IE RVLA ++G++ +AF D++ T + F V P Sbjct: 645 IRKAFVPSEPGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPE 704 Query: 423 QVTKDQRAIGKVMELALGY 441 V + R K + + Y Sbjct: 705 DVDANMRRQAKAVNFGIVY 723 >gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] Length = 924 Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 30/168 (17%) Query: 292 NTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L +A+N + GR+ + L A+ TGR S QN+P R+ E Sbjct: 634 DALKDAINPNTGRVHTSFS-LAATTTGRLSSSEPNLQNIP--IRTEE------------- 677 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 +R A G +V AD + IE R+LA +A + +AF G+D++ Sbjct: 678 ----------GRKIREAFTAEPGHVIVAADYSQIELRLLAHIADVEALKQAFREGQDIHA 727 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 T + F V + R K + + Y G AF +A+ G+ Sbjct: 728 LTASEMFGVPLENMDPTTRRNAKAINFGIIY--GISAF-GLANNLGIG 772 >gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 884 Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKV 434 L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + A+ VT + R K Sbjct: 656 LLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKAEDVTPNDRRNAKA 715 Query: 435 MELALGY 441 + + Y Sbjct: 716 VNFGIVY 722 >gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] Length = 931 Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +A EG L+ D + IE R+LA +A +AF G D++ T ++ FNV Sbjct: 691 IREAFVAEEGNVLLALDYSQIELRILAHVAKIDALKEAFYNGVDIHALTASQMFNV 746 >gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58] gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58] Length = 928 Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G ++ AD + IE R+ A MA +AF GED++ T + F + Sbjct: 688 IRHAFVAEPGHVILAADYSQIELRLAAHMADVPALKEAFAAGEDIHAATAEQLFG----E 743 Query: 424 VTKDQRAIGKVMELALGY 441 V ++ R K + A+ Y Sbjct: 744 VNRETRGRAKTINFAILY 761 >gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104] gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104] Length = 431 Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 190 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 249 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 250 EDVTPNMRRQAKAVNFGIVY 269 >gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] Length = 944 Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIIS-------DCVRSCVIASEGKKLVVADLA 382 P R H +Q IT +S+P+ LQ I + R+ + +S K L+ AD + Sbjct: 663 PLTGRLHTSFNQFITATGRLSSSNPN-LQNIPIRSPLGKEIRRAFIPSSPDKWLLSADYS 721 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE R+ A ++G+ ++AF ED++ T F ++T D R K + + Y Sbjct: 722 QIELRIAAEISGDPQLIEAFRNREDIHTATARVIFGS--DEITPDMRRKAKEVNFGVLY 778 >gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] Length = 944 Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 10/125 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKK-LVVADLAG 383 P R H +Q IT +S+P+ I + +R I S + L+ AD + Sbjct: 663 PLTGRLHTTFNQFITATGRLSSSNPNLQNIPIRSPLGKEIRRAFIPSTPENWLLSADYSQ 722 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+ A ++G+ L+AF ED++ T F+ ++T D R K E+ G Sbjct: 723 IELRIAAEISGDPQLLEAFRNREDIHTATAKVIFDT--DEITSDMRR--KAKEVNFGVLY 778 Query: 444 GAKAF 448 G F Sbjct: 779 GIMPF 783 >gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group] Length = 885 Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R +A+ G L+VAD +E R+LA +A + L AF+ G D + T Sbjct: 616 IRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRT 664 >gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032] gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032] Length = 879 Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEAR 387 + H +Q +T ++DP+ P+++ +R + S EG + AD + IE R Sbjct: 604 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELR 663 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA ++ ++ ++AF D++ T F+V+ +VT R K + + Y Sbjct: 664 VLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVY 717 >gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] Length = 848 Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 607 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 666 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 667 EDVTPNMRRQAKAVNFGIVY 686 >gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583] gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1] gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2] gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1] gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11] gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98] gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712] gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613] gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583] gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1] gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2] gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1] gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11] gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98] gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712] gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613] gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76] gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017] gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027] gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141] gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244] gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012] gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031] gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043] gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312] gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341] gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467] Length = 882 Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720 >gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] Length = 879 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 334 RSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIAS-EGKKLVVADLAGIEAR 387 + H +Q +T ++DP+ P+++ +R + S EG + AD + IE R Sbjct: 604 KVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELR 663 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 VLA ++ ++ ++AF D++ T F+V+ +VT R K + + Y Sbjct: 664 VLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVY 717 >gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri] gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri] Length = 968 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R A G LVVAD +E R+LA MAG + +AFE G D + T Sbjct: 696 IRKAFTAGPGNVLVVADYGQLELRLLAHMAGCKSMQEAFEAGGDFHSRT 744 >gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346] Length = 882 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720 >gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342] Length = 882 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720 >gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8] gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8] gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000] Length = 882 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720 >gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp Length = 579 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 300 PATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 359 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 360 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIPY 417 >gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9] gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9] Length = 334 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAF-ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 LV D + EAR+ +AG++ + AF + D++ T + F V +VTKD R K Sbjct: 37 LVFTDYSAQEARLAGVLAGDEQMINAFLDPSRDVHTETASLVFKVPVEEVTKDLRTRAKA 96 Query: 435 MELALGYQGGAKAF 448 + L Y +F Sbjct: 97 VTFGLMYGEDPNSF 110 >gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] Length = 946 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQ-IISDCVRSCVIASEGKKLVV-ADLAG 383 P + H +Q +T +S P+ P++ +I +R I S + L++ AD + Sbjct: 665 PLTGKLHTSFNQHVTATGRLSSSHPNLQNIPIRTLIGKEIRRAFIPSNPENLLLSADYSQ 724 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RV A ++G++ ++AF ED++ T FN ++T + R K E+ G Sbjct: 725 IELRVAAEISGDEKLMEAFRNREDIHSATARTIFNT--TEITPEMRR--KAKEVNFGVLY 780 Query: 444 GAKAF 448 G F Sbjct: 781 GIMPF 785 >gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3] gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6] gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG] gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3] gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6] gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG] gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137] gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62] gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF] Length = 882 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720 >gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group] gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group] Length = 560 Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R +A+ G L+VAD +E R+LA +A + L AF+ G D + T Sbjct: 291 IRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRT 339 >gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol] gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol] Length = 882 Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 641 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 700 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 701 EDVTPNMRRQAKAVNFGIVY 720 >gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2] gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2] Length = 890 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + SE G ++ AD + IE RVLA ++G++ +AF D++ T F V+ Sbjct: 650 IRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDVFGVSAD 709 Query: 423 QVTKDQRAIGKVMELALGY 441 QV + R K + + Y Sbjct: 710 QVDSNMRRSAKAVNFGIVY 728 >gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322] gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322] Length = 837 Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 364 VRSCVIASEGKKLVVA-DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + E L+ + D + IE RVLA ++ ++ +AF G+D++ +T R F V A Sbjct: 596 IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKA 655 Query: 423 Q-VTKDQRAIGKVMELALGY 441 + VT + R K + + Y Sbjct: 656 EDVTPNMRRQAKAVNFGIVY 675 >gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H] gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H] Length = 944 Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A+ G L+ AD + IE R+LA +A + L+AF G+D++ T + F + Sbjct: 705 IRKAFVATPGCVLLSADYSQIELRLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEG 764 Query: 424 VTKDQRAIGKVMELALGYQGGAKAF 448 + R K + + Y G AF Sbjct: 765 MDPLTRRRAKAINFGIIY--GISAF 787 >gi|118088564|ref|XP_419746.2| PREDICTED: similar to laminin, alpha 2 (merosin, congenital muscular dystrophy) [Gallus gallus] Length = 3133 Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 21/34 (61%) Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 C G+T EC YD+N + ++ +FGEY G V V Sbjct: 348 CHGKTEECYYDQNVADRNQSLNIFGEYIGGGVCV 381 >gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] Length = 994 Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 I +R +A G L+ AD + IE R+ A +A +AF GED++ T F Sbjct: 750 IGRQIRDAFVAEPGHVLLSADYSQIELRLAAHIADVPALREAFAHGEDIHARTAMELFG- 808 Query: 420 APAQVTKDQRAIGKVMELALGY 441 +V +D R K + A+ Y Sbjct: 809 ---EVNRDTRGRAKTINFAILY 827 >gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437] Length = 881 Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQIISDC-VRSCVIASEGKKLVV-ADLAGIEA 386 + H +Q I ++DP+ P+++ +R + SE + L++ AD + IE Sbjct: 605 GKIHTRFNQAIAATGRLSSTDPNLQNIPIRLEEGRRIRQVFVPSEEEWLMLSADYSQIEL 664 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA ++G++ ++AF+ D++ T F V+ +VT R K + + Y Sbjct: 665 RVLAHLSGDENLIEAFQKELDVHTKTAMDVFGVSADEVTPWMRRHAKAVNFGIVY 719 >gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] Length = 878 Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 36/72 (50%) Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 +SE ++ AD + IE RVLA + + +AF G+D++ T + F V +VT R Sbjct: 645 SSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMR 704 Query: 430 AIGKVMELALGY 441 K + + Y Sbjct: 705 RQAKAVNFGIVY 716 >gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119] gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119] Length = 878 Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 36/72 (50%) Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 +SE ++ AD + IE RVLA + + +AF G+D++ T + F V +VT R Sbjct: 645 SSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMR 704 Query: 430 AIGKVMELALGY 441 K + + Y Sbjct: 705 RQAKAVNFGIVY 716 >gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair Position gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair Position gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site (- 1 Basepair Position) gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion Site gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion Site (-1 Basepair Position) Length = 580 Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418 >gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 11 Base Pairs Of Duplex Dna After Addition Of Two Datp Residues gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna Length = 580 Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418 >gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna. gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 10 Base Pairs Of Duplex Dna Following Addition Of A Single Dttp Residue gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 11 Base Pairs Of Duplex Dna Following Addition Of A Dttp And A Datp Residue. gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 15 Base Pairs Of Duplex Dna Following Addition Of Dttp, Datp, Dctp, And Dgtp Residues. gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 12 Base Pairs Of Duplex Dna Following Addition Of A Dttp, A Datp, And A Dctp Residue. gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Two Rounds Of Primer Extension, Following Incorporation Of Dctp And Dgtp. gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Three Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, And Dttp. gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Five Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, Dttp, And Datp. gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Cytosine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A Benzo[a]pyrene Adduct That Blocks Replication gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As Yet Unnamed) Dna Polymerase Fragment Length = 580 Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418 >gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418 >gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010] Length = 884 Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + S+ G ++ AD + IE RVLA ++G++ +AF D++ T F V+ A Sbjct: 644 IRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEA 703 Query: 423 QVTKDQRAIGKVMELALGY 441 +V + R K + + Y Sbjct: 704 EVDANMRRSAKAVNFGIVY 722 >gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase Active Site gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active Site gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A Dna Polymerase gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine At The Polymerase Active Site Length = 580 Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418 >gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp Length = 580 Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 301 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 360 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 361 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 418 >gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 908 Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + S+ G ++ AD + IE RVLA ++G++ +AF D++ T F V+ A Sbjct: 668 IRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEA 727 Query: 423 QVTKDQRAIGKVMELALGY 441 +V + R K + + Y Sbjct: 728 EVDANMRRSAKAVNFGIVY 746 >gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)] Length = 876 Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 597 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 656 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 657 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 714 >gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] Length = 221 Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 33/58 (56%) Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 +E R++A ++G++ ++AF +G D + + + + ++T DQR+ K M L Y Sbjct: 1 MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 58 >gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3] gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3] Length = 876 Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 597 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 656 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 657 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 714 >gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus] Length = 878 Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 599 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 658 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 659 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 716 >gi|299142345|ref|ZP_07035477.1| exonuclease [Prevotella oris C735] gi|298576067|gb|EFI47941.1| exonuclease [Prevotella oris C735] Length = 162 Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 46 DCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101 D H P+ P+V K ++ +VAHN F+ + LKA C+ +D P + + CTL +R Sbjct: 61 DTNHAPIFPEVWCKVEPLIVNLPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYCTLAQSR 120 >gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52] gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52] Length = 876 Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 597 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 656 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 657 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 714 >gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus] Length = 878 Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 599 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 658 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 659 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 716 >gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae KM-6054] Length = 329 Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 51 PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVLARSNGLP 106 P P+V E E D +VAHN+ F+ ++ F+ L P+ + +CT+VLAR LP Sbjct: 86 PTFPEVAAEFAERLRDRVLVAHNALFDWNMISREFSRAGLRAPVEQRLCTMVLARDLRLP 145 >gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans] gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans] Length = 967 Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 5/97 (5%) Query: 357 LQIISDCVR-SC----VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 +Q+ SD V SC + E + L+ AD +E R+LA M+ ++ L+ + +DL++ Sbjct: 706 IQVGSDAVNISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIA 765 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A + ++VT D R K + + Y G ++ Sbjct: 766 IAAHWNKIKESEVTPDLRNSTKQVCYGIVYGMGMRSL 802 >gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426] gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426] Length = 878 Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 599 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 658 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 659 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 716 >gi|295426488|ref|ZP_06819138.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus amylolyticus DSM 11664] gi|295063856|gb|EFG54814.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus amylolyticus DSM 11664] Length = 122 Score = 37.4 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 14/130 (10%) Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL---ES 224 EI ++LE P+ E +++DQ INDRG +D L +N + ++ DQ L + Sbjct: 2 EITQKLERFPVPKNEWGNYWMDQDINDRGIRIDQQL---VNNAIRCQKNFHDQYLQVSQK 58 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 LT GL + + L+ LK WL + G+ L++ ++L + T QV + R S Sbjct: 59 LT-GLANPNPPLQ-LKDWLH-QQGVKTNSLSKAAVTQLLHTT---TGTVHQVLSLRQLLS 112 Query: 285 RSAVLKLNTL 294 +S+V K + Sbjct: 113 KSSVKKYQAM 122 >gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319] gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319] Length = 875 Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASE-GKKLVVADLAGIEA 386 + H +Q +T + DP+ P+++ +R + S+ G + AD + IE Sbjct: 599 GKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGKKIRGAFVPSQPGWLIFAADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F+V +VT + R K + + Y Sbjct: 659 RVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVEREEVTANMRRQAKAVNFGIVY 713 >gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax] Length = 877 Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 330 PRPSRSHEELDQIITHLPTSITSDPD----PLQIISD-CVRSCVIASEGKKLV-VADLAG 383 P + H +Q +T +++P+ P+++ +R + SE L+ AD + Sbjct: 598 PDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQ 657 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 IE RVLA +A + ++AF D++ T F V+ +VT + R K + + Y Sbjct: 658 IELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVY 715 >gi|160891538|ref|ZP_02072541.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492] gi|317478357|ref|ZP_07937521.1| exonuclease [Bacteroides sp. 4_1_36] gi|156858945|gb|EDO52376.1| hypothetical protein BACUNI_03990 [Bacteroides uniformis ATCC 8492] gi|316905516|gb|EFV27306.1| exonuclease [Bacteroides sp. 4_1_36] Length = 163 Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFN---LDIPIHRWIC 95 H + L D P+ P V +E + + +VAHN F+ + LKA F +D P + + C Sbjct: 55 HGLTLADTQDAPIFPVVWQEIAPRIEGLPLVAHNKAFDESCLKAVFRTYCMDYPDYEFYC 114 Query: 96 TLVLARS--NGLPS 107 TL +R GLP+ Sbjct: 115 TLQASRRAIKGLPN 128 >gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551] gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551] Length = 875 Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 333 SRSHEELDQIITHLPTSITSDPD----PLQII-SDCVRSCVIASEGKKLV-VADLAGIEA 386 + H +Q +T + DP+ P+++ +R + S+ L+ AD + IE Sbjct: 599 GKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGKKIRGAFVPSQPDWLIFAADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 RVLA +A ++ + AF+ D++ T F+V +VT + R K + + Y Sbjct: 659 RVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVEREEVTSNMRRQAKAVNFGIVY 713 >gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus] Length = 482 Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA--RSFNVAPA 422 R ++AS G V AD + +E R++A ++G+ LK F G D++ T A + Sbjct: 216 RDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKKAE 275 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAF 448 +T+++R K++ + Y A A Sbjct: 276 DITEEERRQTKIVVYGVLYGQSADAL 301 Searching..................................................done Results from round 2 >gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus] Length = 675 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 675/675 (100%), Positives = 675/675 (100%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA Sbjct: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS Sbjct: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS Sbjct: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK Sbjct: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS Sbjct: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII Sbjct: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA Sbjct: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN Sbjct: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA Sbjct: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN Sbjct: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG Sbjct: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 Query: 661 LPLKAEGYESKRYRK 675 LPLKAEGYESKRYRK Sbjct: 661 LPLKAEGYESKRYRK 675 >gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 673 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 399/679 (58%), Positives = 490/679 (72%), Gaps = 10/679 (1%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M LFID ETRSP L K G+ YAE+ + L A+ +D ++LWDC +PVMP L + Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ V VAHNS FER + K N+ IP RWICT LAR NGLP++LK ALK Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG E YD + NH +AW+LFGEYCK DV TRE++KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E+ LW LDQ INDRGY +D+ L L +++ ER KLD+EL++LT+G++ SSR + Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L +LFL GL L D+ E+T LS +T +A + NNR+ +S+SA+LKLNTL A+ Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQ-PNITQRAKDILNNRLSSSQSAILKLNTLSGAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP--DP 356 + D RLRGTLQF GASRTGRWSGCVF PQNLPRP+ SHE +++ I ++ P DP Sbjct: 300 SPDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIE-----SSNFPSDDP 354 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 L+ SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGEQWKL AF GED+Y T Y+++ Sbjct: 355 LRFASDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKA 414 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 FN+ + VTKDQRAIGKVMELALGYQGGA+ FQ MAS GL+L F+ +K + ++WE Sbjct: 415 FNIPLSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWE 474 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 A+ C WMQE +PE A+ D FIGTACE VK AWR KH V +LW + +AF+ I++G+ Sbjct: 475 QAQRRCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGR 534 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 +I AR+ VP + MKK N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGK Sbjct: 535 SISARRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGK 594 Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656 LTENIVQA+SRDILA GM+NAT+AGYDIVLTVHDEIVCETPDT EF++ L LMT NP Sbjct: 595 LTENIVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPK 654 Query: 657 WAKGLPLKAEGYESKRYRK 675 WAKGLPLKAEGYE+ RYRK Sbjct: 655 WAKGLPLKAEGYEALRYRK 673 >gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 675 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 397/677 (58%), Positives = 489/677 (72%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M LFID ETRSP L K G+ YAE+ + L A+ +D ++LWDC +PVMP L + Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ V VAHNS FER + K N+ IP RWICT LAR NGLP++LK ALK Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG E YD + NH +AW+LFGEYCK DV TRE++KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E+ LW LDQ INDRGY +D+ L L +++ ER +LD+E + LT G++ S+R + Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L +LFL TGL L D+ E+T LS + + + NNR+ +S+SA+LKLNTL A+ Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQ-PDIPQLSKAILNNRLSSSQSAILKLNTLSGAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + D RLRGTLQF GASRTGRWSGCVF PQNLPR + + +E++++I L + + DPL+ Sbjct: 300 SPDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVP-IKDPLR 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 SDCVRSC+IAS GKKL+VADLAGIEARVLAW+AGEQWKL AF GED+Y T Y+++FN Sbjct: 359 FASDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V + VTKDQRAIGKVMELALGYQGGA+ FQKMAST GLNL F+ +K + E+WE A Sbjct: 419 VPLSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + C WMQE HPE A+ D FIGTACE VK+AWR KH V +LW + +AF+ I++G++I Sbjct: 479 QRRCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ VP + MKK N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKLT Sbjct: 539 SARRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDILA GM+NATKAGYDIVLTVHDEIVCE PDT EF++ L LMT NP+WA Sbjct: 599 ENIVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+ RYRK Sbjct: 659 KGLPLKAEGYEAVRYRK 675 >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1] gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2] gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2] gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1] Length = 675 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 401/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L + DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 401/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L + DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 400/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL E + Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSETV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L + DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 400/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFC G YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L + DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 399/677 (58%), Positives = 482/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFC G YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L + DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPD F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYEAKRYRK 675 >gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 399/677 (58%), Positives = 482/677 (71%), Gaps = 4/677 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 KMEEGK LIARFC G YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L + DPL Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 Query: 659 KGLPLKAEGYESKRYRK 675 KG PLKAEGYE+KRYRK Sbjct: 659 KGFPLKAEGYEAKRYRK 675 >gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 646 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 208/702 (29%), Positives = 321/702 (45%), Gaps = 84/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L K G+ +Y E + ++LFA+ D PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ DV A N+ FER L + W C++V A + GLP +L+ VG Sbjct: 61 LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN+P H + W +F +Y DV Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +RL P+ ++ + +++DQ INDRG +D+ L ++ RTKL + ++ +T Sbjct: 181 IQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKEIT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL GL + L + +L K P+ QV R + ++S+V Sbjct: 239 ELENPNSVQQMKAWLSD-NGLETDTLGKKAVAELL---KSAPPKLSQVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + + + +DGR RG QF GA+RTGR+SG QNLP+ S + + Sbjct: 295 RKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSGN 354 Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + D +S +R+ I EG + +VAD + IEAR++AW AGE+W+ F G Sbjct: 355 FEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWRQDVFAKG 414 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 D+Y + ++ F V + + R GK+ ELALGY G A + M + GL + Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLTEDEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV WRQ + + + W Sbjct: 475 PPLVDA-----------------------------------------WRQSNPNIVKFWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR--- 577 + A + ++ + + L + LPSGR L Y +G N+ Sbjct: 494 NVDHAVMEAVK------FKHTTSEYGLTFSCRSGMLFITLPSGRKLAYVKPKIGTNKFGG 547 Query: 578 ---SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 +Y +T++ R +YG K ENIVQA +RDIL M IV+ +HDE+V Sbjct: 548 QCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQTL--RCCSIVMHIHDEVV 605 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M P WAKGL L+A+GY + Y+K Sbjct: 606 IEAD--PSMSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016] gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 644 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 207/700 (29%), Positives = 318/700 (45%), Gaps = 82/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M ++ ID ET S +L KCG+ +YAE D ++LF + D V++ D +P + Sbjct: 1 MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + VT A N+ FER L NL + W C++V + GLP +L+ VG L Sbjct: 61 NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P H + W F Y DV I Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMSIQ 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ ++LDQ INDRG +D+A ++ + R KL ++ +T + Sbjct: 181 QRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITN--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++K WL + GL + L + +L + + R + ++S++ K Sbjct: 239 ENPNSIQQMKEWL-ADNGLETDSLGKKAVAEMLKTAPEPLGTV---LELRQQLAKSSIKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A+ +DGR RG QF GA+RTGR+SG + QNLP+ E + + Sbjct: 295 YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 354 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +++S+ +R+ + EG K +VAD + IEARV+AW+AGE+W++ F+ G D Sbjct: 355 ALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGD 414 Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + ++ FNV + V R GK+ ELALGY G A + M + G+ Sbjct: 415 IYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEELQP 474 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 LV WRQ + +++LW ++ Sbjct: 475 LVTA-----------------------------------------WRQSNPNITKLWWDV 493 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNN 576 A + ++ + + L ++LPSGR L Y G + Sbjct: 494 DHAVKTCVKQKIP------TETHGIKFIYQSGMLFIVLPSGRRLSYVKPRMGENVFGGES 547 Query: 577 RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 +Y T++ R +YG K ENIVQA+SRDIL M IV VHDEI+ E Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN--CSIVAHVHDEIIIE 605 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + S + M P+WA GL L A+GYE + Y+K Sbjct: 606 AD--MRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643 >gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] Length = 645 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 216/698 (30%), Positives = 323/698 (46%), Gaps = 80/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL+KCG+ KYA V+LF + D V + D +P+ + Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL +T VT A N+ FER L + W CT+V + + GLP +L++ G AL L Sbjct: 64 SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ EGK+LI F C+ RN+P H E W F Y DV +I KR Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVETEMQIQKR 183 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E ++LDQ INDRG VD+ L + R +L L+ LT + + Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQELTG--LDN 241 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++++K WL + GL + L + ++ + V + R + ++S+V K Sbjct: 242 PNSVQQMKQWL-ADHGLETDTLGKKVVAELV---RSAPEPLKTVLSLRQQLAKSSVKKYA 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349 + A+ +DGR G QF GA+RTGR+SG + QNLP+ S + + Sbjct: 298 AMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMRGGNYEAI 357 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D +S +R+ + +G+K +VAD + IEARV+AW AGE+W+LK FE G+D+Y Sbjct: 358 SMLYEDIPDTLSQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGDDIY 417 Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + ++ F+V + V R GK+ ELALGY G A + M + GL LV Sbjct: 418 SASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGLAEEELQPLV 477 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 WR + +++ W ++ + Sbjct: 478 DA-----------------------------------------WRTSNPMITQFWWDVDR 496 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT 584 A ++ ++ + + ++ L + LPSGR L Y +G N+ + T Sbjct: 497 AVKECVKKRVPMESHG------LHFDYRSAMLFITLPSGRRLAYVKPRIGENQFGRESVT 550 Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 ++ R +YG K ENIVQ +RDIL M IV VHDEI+ E Sbjct: 551 YMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMRTLRN--CAIVAHVHDEIIIEAD 608 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +A + M PSWAKGL L+A+GYE + Y+K Sbjct: 609 RRMSLSA--VCEQMGRTPSWAKGLKLRADGYECEFYQK 644 >gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] Length = 644 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 215/698 (30%), Positives = 330/698 (47%), Gaps = 78/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL K G+ +YAE D ++LF + D PV++ D +P+ ++ Sbjct: 1 MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +A+ + +VT A N+ FER L F + + W CT+V + GLP +L+ Sbjct: 61 QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTGA 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 +K+ +GKELI F CK RN P H E W F Y DV V I ++ Sbjct: 121 DKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQEK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L+ P+ +E + LDQ INDRG +D+ L Q + R +L L+ LT + + Sbjct: 181 LQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + ++K+WL + GL + L + + + +L K+ +V R ++S+V K Sbjct: 239 PNSVVQMKSWLSEK-GLETDSLDKASVKALL---KEAPEHLSEVLELRQLLAKSSVKKYT 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + A+ +DGR RG LQF GA+RTGR++G + QNLP+ S E + + Sbjct: 295 AMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDAL 354 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + ++S+ +R+ + +G K +VAD + IEARV+AW+AGE W+ + F T +Y Sbjct: 355 EILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKIY 414 Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + ++ F V +VTK R GK+ ELALGY G A + M + GL LV Sbjct: 415 EASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEELKPLV 474 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 WR + + LW ++ + Sbjct: 475 YA-----------------------------------------WRNANPNIVRLWWDVDR 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRS 578 A ++ + R R + + + L++ LPSGR L Y + Sbjct: 494 AVKEAVTE------RCRTETHRIRFEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEAVT 547 Query: 579 YLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 Y T++ R +YG K ENIVQA+SRD+L M N ++G +IV+ VHDE+V E P Sbjct: 548 YEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLEVP 607 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + LM P WA GL L+A+G+E Y+K Sbjct: 608 L--EICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643 >gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 646 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 205/702 (29%), Positives = 311/702 (44%), Gaps = 84/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L K G+ +Y E + ++LFA+ D PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ V A N+ FER L + W C+++ A + GLP +L+ VG Sbjct: 61 AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN+P H + W F Y DV Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETEMG 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +L P+ ++ E +++DQ INDRG +D+ L + R +L ++ +T Sbjct: 181 IQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKDMT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL G+ + L + +L K V R + ++S+V Sbjct: 239 ELENPNSVQQMKQWLSD-NGIETDSLDKKAVAELL---KDAPDNLADVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + + + SDGR RG QF GA+RTGR+SG QNLP+ + + Sbjct: 295 RKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLSEARSLVRSGD 354 Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + D +S +R+ I E VAD + IEARV+AW AGE W+ + FE G Sbjct: 355 FDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFAGESWRQQVFEKG 414 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 D+Y + ++ F V + + R GK+ ELALGY G A + M + GLN Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLNEEEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV WRQ + R+ E W Sbjct: 475 PALVDA-----------------------------------------WRQANPRIVEFWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR--- 577 + +A + ++ + + L + LPSGR L Y +G N+ Sbjct: 494 AVDRAVMEAVKY------KHTTTDYGLTFSCKSGMLFITLPSGRKLAYVKPKIGTNKFGG 547 Query: 578 ---SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 +Y T++ R +YG K ENIVQA +RDIL M IV+ +HDE+V Sbjct: 548 SCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDELV 605 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + + M P WAKGL L+A+GY + Y+K Sbjct: 606 IEAD--PKVSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645 >gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 644 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 205/700 (29%), Positives = 314/700 (44%), Gaps = 82/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M ++ ID ET S +L K G+ +YAE D ++LF + D V++ D +P + Sbjct: 1 MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + VT A N+ FER L NL + W C+++ + GLP +L+ VG L Sbjct: 61 NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P H + W F Y DV I Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMSIQ 180 Query: 173 KRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +R + E ++LDQ INDRG +D+ + + R KL ++ +T + Sbjct: 181 QRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITN--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++K WL + GL + L + +L + + R + ++S+V K Sbjct: 239 ENPNSVQQMKDWL-ADNGLETDTLGKKAVAEMLKTAPEPLGTV---LELRQQLAKSSVKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A+ +DGR RG QF GA+RTGR+SG + QNLP+ E + + Sbjct: 295 YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 354 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +++S+ +R+ I EG K +VAD + IEARV+AW+AGE+W++ F+ G D Sbjct: 355 ALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGD 414 Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + ++ FNV + V R GK+ ELALGY G A + M + G+ Sbjct: 415 IYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEELQP 474 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 LV WRQ + +++LW ++ Sbjct: 475 LVTA-----------------------------------------WRQSNPNITKLWWDV 493 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNN 576 +A + ++ + + L + LPSGR L Y G + Sbjct: 494 DRAVKTCVKQKTP------TETHGIKFIYQSGMLFIALPSGRRLAYVKPRMGENMFGGES 547 Query: 577 RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 +Y T++ R +YG K ENIVQA+SRDIL M IV VHDEI+ E Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN--CSIVAHVHDEIIIE 605 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +A + M P+WA GL L A+GYE + Y+K Sbjct: 606 ADMGTSLSA--ICEQMAKMPTWANGLLLSADGYECQFYQK 643 >gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] Length = 645 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 212/698 (30%), Positives = 314/698 (44%), Gaps = 80/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL+KCG+ KYA V+LF + D V + D +P+ Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL +T VT N+ ER L + W CT+V + + GLP +L++ G AL L Sbjct: 64 SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ EGK+LI F C+ RN+P H E W F Y DV +I KR Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQKR 183 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E ++LDQ INDRG VD+ L I R +L + LT + + Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRELT--ELEN 241 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +++K WL + GL + L + ++ + + +V + R + ++S+V K Sbjct: 242 PNSAQQMKQWL-ADHGLETDTLGKKAVAELVKTAPEP---LREVLSLRQQLAKSSVKKYT 297 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349 + A+ +D R G QF GA+RTGR+SG + QNLP+ + + Sbjct: 298 AMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEAL 357 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D +S +R+ + +G+K +VAD + IEARV+AW AGE+W+LK FE G D+Y Sbjct: 358 SVLYEDIPDTLSQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGGDIY 417 Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + ++ F+V + V R GK+ ELALGY G A + M + GL LV Sbjct: 418 CASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGLAEEELQPLV 477 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 WR + +++ W ++ + Sbjct: 478 DA-----------------------------------------WRGSNPMITQFWWDVDR 496 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRS 578 A + I R + + L + LPSGR L Y G + + Sbjct: 497 AVKDCIRQ------RIPTETHGLRFDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVT 550 Query: 579 YLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 Y+ + T++ R +YG K ENIVQ +RDIL M IV VHDEI+ E Sbjct: 551 YMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQTLKN--CSIVAHVHDEIIIEAD 608 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + M P WAKGL L+A+GYE + Y+K Sbjct: 609 R--RMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644 >gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] Length = 646 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 222/698 (31%), Positives = 332/698 (47%), Gaps = 83/698 (11%) Query: 4 LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S +DL KCG+ YA+ V+LFA+ FD ++ D +P + A+ Sbjct: 5 LEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAAI 64 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + DV A N+ FERT L F + W C+ V A LP +L+ VG L L Q Sbjct: 65 FDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQQ 124 Query: 122 KMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLE- 176 KM+EGK+LI F CK RN P H E W LF YC DV V +EI ++L+ Sbjct: 125 KMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRKLQH 184 Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 P+ E EL+ LDQ INDRG VD L + + + + LT + + Sbjct: 185 FPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTG--LENPNS 242 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + ++K+WL E G+ +E L++ T ++ + + ++ R+ ++++V K + Sbjct: 243 VAQIKSWLG-ENGVEMESLSKKTVAGLIEESDG---EVQELLRLRLLMAKTSVKKYEAME 298 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT------S 349 ++ SDGR+ G LQF GA+RTGRW+G + QNLP+ E+ + + Sbjct: 299 RSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDVELL 358 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 S P+ ++S+ +R+ I G + VVAD + IEARVLAW++GE+W+L+ F + +Y Sbjct: 359 YDSTPN---VLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKIY 415 Query: 410 VTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + + F+V +VTK R GK+ ELALGY G A M + GL A Sbjct: 416 EASASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMGALDMGLVEEELA--- 472 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + AWR + +++ W ++ Sbjct: 473 --------------------------------------PLVSAWRSANPHITQFWWDVDA 494 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--NNRSYLNTTT 584 A + + K A + + + L + LPSGR L Y N+ N T Sbjct: 495 AAVKAVTEKKKTRAGR------IVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLT 548 Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 ++ R TYG KL ENIVQ +RD+LAE M+ + GY IV+ HDEI+ E P Sbjct: 549 YEGIAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVP 608 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + + +M P WA GLPL+A+GYE Y+K Sbjct: 609 EGT-GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645 >gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] Length = 646 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 205/702 (29%), Positives = 317/702 (45%), Gaps = 84/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L K G+ +Y E + ++LFA+ D V++ D +P+ + Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALEN V A N+ FER L + W C+++ A + GLP +L+ VG Sbjct: 61 LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN+P H + W +F +Y DV Sbjct: 121 VLGLEKQKLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +RL P+ ++ + +++DQ INDRG +D+ L ++ RT+L + ++ +T Sbjct: 181 IQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKEIT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL GL + L + +L K +P+ QV R + ++S+V Sbjct: 239 ELENPNSVQQMKAWLSD-NGLETDTLGKKAVTELL---KSASPKLSQVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + + + +DGR RG QF GA+RTGR+SG QNLP+ + + Sbjct: 295 RKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSGN 354 Query: 349 SIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D +S +R+ I EG + +VAD + IEARV+AW AGE+W+ + F G Sbjct: 355 FEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWRQEVFAKG 414 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 D+Y + ++ F V + + R GK+ ELALGY G A + M + GL Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV WRQ + + + W Sbjct: 475 PPLVDA-----------------------------------------WRQSNPNIVKFWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR--- 577 + A + ++ + + L + LPSGR L Y +G N+ Sbjct: 494 NVDHAVMEAVK------FKHTTSSYGLTFSCRSGMLFITLPSGRKLAYVKPKLGTNKFGG 547 Query: 578 ---SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 +Y T++ R +YG K ENIVQA +RDIL M IV+ +HDE+V Sbjct: 548 QCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDEVV 605 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M P WAKGL L+A+GY + Y+K Sbjct: 606 IEAD--PRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] Length = 646 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 207/702 (29%), Positives = 313/702 (44%), Gaps = 84/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L+K G+ +Y E D +ILF + D V++ D +P+ + Sbjct: 1 MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 +ALE+ VT A N+ FER L + W C++V + GLP +L+ VG Sbjct: 61 DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L L QK+ EGKELI FC RN P+H E W F Y DV + Sbjct: 121 VLGLEKQKLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAEMQ 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I RL+ P+ + ++LDQ INDRG VD+ +I +V R L +++ LT Sbjct: 181 IQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQVLT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 +++ + ++K WL G+ E L + ++ + + ++ R + ++S+V Sbjct: 239 SLTNPNSVVQMKGWLSD-NGIETETLGKKAVAALIDE---VPDEMSEILALRQKLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + ++ DGR+RG QF GA+RTGR++G + QNLP+ + + Sbjct: 295 RKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSGD 354 Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + D D +S +R+ I + + +VAD + IEARV+AW AGE W+ F G Sbjct: 355 YDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAGESWRADVFAKG 414 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 D+Y + ++ F V + V R GK+ ELALGY G A + M + GL Sbjct: 415 GDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMGALEMGLAEEEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV AWR + + W Sbjct: 475 PELV-----------------------------------------SAWRCSNPNIVRFWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------G 574 ++ A ++ I++ + V+ L + LPSGR L Y G Sbjct: 494 DVDSAVKKAIKSKTS------TATHGVHFSCRSGMLFITLPSGRVLSYVKPCMGENKFGG 547 Query: 575 NNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + +Y +T++ R +YG K ENIVQA SRDIL M IV VHDEI+ Sbjct: 548 ESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMKTL--RCCSIVAHVHDEII 605 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M P WA+GL L+A+GYE + Y+K Sbjct: 606 IEAD--PRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645 >gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 647 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 206/700 (29%), Positives = 316/700 (45%), Gaps = 82/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + +L +D ET S ++L K G+ +YAE D ++LF + D V++ D +P + Sbjct: 4 INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + VT A N+ FER L NL + W C++V + GLP +L+ VG L Sbjct: 64 NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123 Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P H + W F Y DV I Sbjct: 124 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEMLIQ 183 Query: 173 KRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL + + ++LDQ INDRG +D+ ++ + R KL ++ +T + Sbjct: 184 QRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITN--L 241 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++++K WL + GL + L + +L + + R + ++S+V K Sbjct: 242 ENPNSVQQMKDWL-ADNGLETDSLGKKVVAEMLKTAPEPLGTV---LELRQQLAKSSVKK 297 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A+ SDGR RG QF GA+RTGR+SG + QNLP+ E + + Sbjct: 298 YTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 357 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +++S+ +R+ I EG K +VAD + IEARV+AW+AGE+W+L F+ G D Sbjct: 358 ALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGGD 417 Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + ++ FNV + V R GK+ ELALGY G A + M + G+ Sbjct: 418 IYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMGALEMGIEEEELQP 477 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 LV WRQ + +++LW ++ Sbjct: 478 LVTA-----------------------------------------WRQSNPNITKLWWDV 496 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NN 576 +A + ++ + L ++LPSGR L Y + Sbjct: 497 DRAVKTCVKQKTP------TATHGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENMFGSES 550 Query: 577 RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 +Y T++ R +YG K ENIVQA+SRDIL M IV VHDEI+ E Sbjct: 551 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN--CSIVAHVHDEIIIE 608 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +A + M P+WA GL L A+GYE + Y+K Sbjct: 609 ADMGMSLSA--ICEQMAKTPTWANGLLLSADGYECQFYQK 646 >gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] Length = 646 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 212/701 (30%), Positives = 320/701 (45%), Gaps = 82/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL K G+ +Y E D ++LF + D V++ D + +P + Sbjct: 1 MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 +AL + DVT A N+ FER L L + W CT+V + GLP +L+ G Sbjct: 61 DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI F CK RN P H + W F Y DV Sbjct: 121 VLGLEKQKLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETEMA 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++L P+ ++LDQ INDRG +D+ L ++ + R+KL + LT Sbjct: 181 IQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + + ++K WL GL + L + +L + + +V R ++S+V Sbjct: 239 ELENPNSVVQMKQWLSD-HGLETDTLGKKAVVELLKTASEP---LGKVLELRQSLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + + +DGR RG QF GA+RTGRW+G + QNLP+ E + + Sbjct: 295 KKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPDLEQARSLVRSGN 354 Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + +++S+ +R+ + +G K +VAD + IEARV+AW+AGE+W+ + FE+G Sbjct: 355 FAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVFESG 414 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F+V + V R GK+ ELALGY G A + M Sbjct: 415 GDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMG----------- 463 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A+E + + AWR + ++ LW + Sbjct: 464 -----------------------------ALEMGLEEEELQPLVSAWRSSNPKIVRLWWD 494 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + +A + + R + + + LPSGR L Y +G NR + Sbjct: 495 IDRAAMKAVRE------RTTTETHGIRFSYQSGMFFITLPSGRRLAYVKPRIGQNRFGSD 548 Query: 582 TTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 T ++ R +YG KLTENIVQA SRDIL M N IV+ VHDEIV Sbjct: 549 CITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNLRH--CSIVMHVHDEIVI 606 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M P WAKGL L+A+GYE+ Y+K Sbjct: 607 EADR--RMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645 >gi|332800352|ref|YP_004461851.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1] gi|332698087|gb|AEE92544.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1] Length = 652 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 226/702 (32%), Positives = 337/702 (48%), Gaps = 78/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DLTKCG+ Y AED ++LF + F++ PVE+ D +P + Sbjct: 1 MTILSIDIETYSSVDLTKCGVYAYTQAEDFEILLFGYAFNNDPVEVIDLASGEQIPDEVT 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 A+ ++ V A N+ FERT L N +P W C+ A + GLP L V + L L Sbjct: 61 NAITDSAVIKTAFNANFERTCLAKYLNKPMPPEEWRCSQAHALTLGLPLNLAGVAKCLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 + QKM EGK LI F CK RN P+H E W F YCK DV V R I KR Sbjct: 121 ADQKMSEGKALIRYFSIPCKPTKANGGRTRNLPHHDREKWETFKAYCKQDVVVERSIRKR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P++ KE +LW LDQ IND G VD L + + +L E LT + + Sbjct: 181 LENYPMTDKELKLWSLDQKINDYGVRVDRQLVENAICCDGIHQKELMAEAIDLTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LKTWL + ++ L++ + +L+ P +V R S+++V K Sbjct: 239 PNSPAQLKTWLKGNHNIQVDSLSKANVEELLNKIN--HPTVTRVLELRQDMSKTSVRKYE 296 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + AM DGR+RG LQ+ GA+RTGRW+G + QNLPR + +L + + + Sbjct: 297 AMDRAMGGDGRIRGLLQYYGANRTGRWAGRLVQVQNLPRNNMKDLDLARKLLLAGDYESL 356 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + ++S +R+ + S G + +++D + IEARV+AW+AGE+W + F+ +Y Sbjct: 357 ELLFDSVPDVLSQLIRTAFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHGKIY 416 Query: 410 VTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 T ++ F V + K + R GKV LA GYQG A + M + GL + Sbjct: 417 EMTASKMFGVPMELIVKGNPEYELRQKGKVAVLACGYQGSVGALKAMGALNMGLKEDE-- 474 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + AWR+ + + +LW + Sbjct: 475 ---------------------------------------LPAIVAAWRESNPNIVKLWWD 495 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------G 574 + A + +++ +I + + L + LPSGR+L Y Sbjct: 496 VEDAAIRAVKDRTSITMQ-----YGLKFYYKSGVLFIRLPSGRNLAYVKPRIELDTRFNK 550 Query: 575 NNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + +Y + R TYGGKLTENI+QA++RD LAE ++ KAGY I VHDE+V Sbjct: 551 DKLTYEGIMLGNKWARIDTYGGKLTENIIQAIARDCLAESLLRLDKAGYKIAFHVHDEVV 610 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + + +M+ + +WAKGLPL+AEG+E+ Y K Sbjct: 611 LDVPQG-FGSLKEVEEIMSQDINWAKGLPLRAEGFETNYYMK 651 >gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] Length = 645 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 217/700 (31%), Positives = 326/700 (46%), Gaps = 81/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L +D ET S +DL+KCG+ KY+E D ++LFA+ D PVE+ D D +P + Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 +L + V A N+ FER L LD + W CT+V + GLP +L VG L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+LI FC RN P+H W F Y DV V I Sbjct: 121 GLDKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIAIQ 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ + ++LDQ INDRG +D Q+ ++ + L+Q+L+ LT + Sbjct: 181 GKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + +++ WL L+ GL E L + +L + + QV R + ++S+V K Sbjct: 239 ENPNSVLQMRGWL-LDHGLETESLGKKAVAELLE--QPIDENLKQVLVLRQQLAKSSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 + SD R RG QF GA+RTGR++G QNLP+ S + + Sbjct: 296 YQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSLVKQSNFE 355 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + ++S+ +R+ + EG K +V+D + IEARV+AW++GE+W+ + F+ G D Sbjct: 356 MLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGD 415 Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNTFAH 464 +Y + ++ F V + V R GK+ ELALGY G A + M A GL + Sbjct: 416 IYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMDALEMGLTEDELQP 475 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 LV + WR + ++ELW + Sbjct: 476 LVNS-----------------------------------------WRDSNINITELWWAV 494 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNT 582 +A + ++ R+ + + L + L SGR LVY +G N+ Sbjct: 495 DKAVKTCVKE------RRSTSTHGIKFEYKSGFLFIQLLSGRKLVYVKPKIGENKFGGEA 548 Query: 583 T-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 T++ R +YG K ENIVQA++RDIL M N K Y IV VHDE++ E Sbjct: 549 VTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLRK--YRIVGHVHDEVIIE 606 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P E + LM+ P WA+GL L A+GYE + Y+K Sbjct: 607 VP--MESKVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644 >gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] Length = 662 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 208/718 (28%), Positives = 317/718 (44%), Gaps = 100/718 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S I+L+KCG+ KYAE D ++LF + D V++ D +PQ L Sbjct: 1 MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKAC---FNLDIPI-----------------HRWICTLV 98 +AL + + A N+ FER L + + W C++V Sbjct: 61 DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154 A + GLP +L+ VG L L QK+ EGKELI F C RN+P H E W Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQKLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPEKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F Y DV I RL P+ +++DQ INDRG +D+ L ++ Sbjct: 181 DAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLVTEAIEMDT 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 RT+L ++ +T + + ++++K WL GL + L + ++ + P+ Sbjct: 241 RSRTELTSAIKKMTD--LENPNSVQQMKQWLS-NNGLETDSLGKKVVAELIKT---APPE 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K T+ A+ DGR RG F GA+RTGRW+G + QNLP+ Sbjct: 295 LQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLPQN 354 Query: 333 SRSHEELDQIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + D +S +R+ I + V+D + IEARV+ Sbjct: 355 HLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447 AW AGE W+ K F G D+Y + ++ F+V + + R GK+ ELALGY G A Sbjct: 415 AWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSIGA 474 Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + M + GL+ + LV Sbjct: 475 LKAMGAIEMGLSEDELPPLVDA-------------------------------------- 496 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 WRQ + + + W ++ +A + +++ + + L + LPSGR Sbjct: 497 ---WRQTNPNIVKFWWDVDRAVMEAVKH------KHTTSCYGLTFSCRSGMLFITLPSGR 547 Query: 567 SLVY--RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 +L Y +G N+ +Y +T++ R +YG K ENIVQA SRDIL M Sbjct: 548 NLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDILCYAMKTL 607 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +IV+ +HDE+V E + +L M P WA+GL L+A+GY Y+K Sbjct: 608 RN--CEIVMHIHDELVIEAD--PCMSLDVLCEQMGRTPPWARGLKLRADGYTCPFYKK 661 >gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 649 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 204/702 (29%), Positives = 328/702 (46%), Gaps = 81/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S ++L K G+ +YAE D ++LF + D V++ D +P + Sbjct: 1 MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 AL + V A N+ FER L + + W CT++ A + GLP +L+ VG Sbjct: 61 NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L QK+ +GK LI F C RN P+H E W++F Y K DV Sbjct: 121 VLGFKKQKLSQGKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNKRDVETEMA 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +L P+S E + ++LDQ IND G +D+ + + + ++ + LT Sbjct: 181 IQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKAKELTG- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + +LK WL L+ G+ + L++ +L + + + + R + ++S+V Sbjct: 240 -LENPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQDSDG---EIHEALSIRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K ++ + SD R RG +QF GA+RTGR+SG + QNLP+ + + + Sbjct: 295 KKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQARSLVKSGN 354 Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D ++S+ +R+ I G + +VAD + IEARV+AW+AGE+W++ F G Sbjct: 355 FTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAGG 414 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 D+Y + ++ FNV + + R GK+ ELALGY G A + M + GL + Sbjct: 415 GDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMGAIQMGLVEDEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + AWR + ++ LW Sbjct: 475 K-----------------------------------------PIVDAWRNSNPNITSLWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYL 580 + +A + ++ + I ++ + + L + LPSGR L Y +G NR Sbjct: 494 RIDRAVKTVVKTKQPI------EIYGIGIFYQSGILFIKLPSGRRLAYVKPLIGENRFGG 547 Query: 581 NTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + T++ R +YG K ENIVQA+SRDILAE M+ + IV+ VHDE+V Sbjct: 548 ESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIVMHVHDEVV 607 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P+ + + +M+ P+WAKGL L A+GYE + Y+K Sbjct: 608 IEAPNKVS-SVEEICRIMSETPAWAKGLILNADGYECEFYKK 648 >gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [butyrate-producing bacterium SM4/1] Length = 646 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 211/702 (30%), Positives = 314/702 (44%), Gaps = 84/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L K G+ +Y E D ++LFA+ D PV+ D +P + Sbjct: 1 MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ VT A N+ FER L + W C++V A GLP +L+ G Sbjct: 61 CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI FC+ RN P H + W F +Y DV Sbjct: 121 VLGLEKQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETEMS 180 Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I RL P+ E ++LDQ INDRG +D+ L Q+ R++L Q ++ LT Sbjct: 181 IQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELTS- 239 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL + G+ + L + +L + + Q +V R + ++S+V Sbjct: 240 -LDNPNSVQQMKQWL-ADNGVETDTLGKKAVAELLKTAPQ---QLQKVLTLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + A+ +DGR RG QF GA+RTGRW+G + QNLP+ + + Sbjct: 295 KKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDDLTEARGLVRAGG 354 Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + D +S +R+ + +K +VAD + IEARV+AW+A E+W+ F G Sbjct: 355 FDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQDVFAEG 414 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 +D+Y + ++ F V + V R GK+ ELALGY G A + M + GL+ + Sbjct: 415 KDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLSEDEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV AWRQ + ++ + W Sbjct: 475 PALV-----------------------------------------SAWRQANPKIVQFWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYL 580 + +A + + + L + LPSGRSL Y +G NR Sbjct: 494 AVDRAVMDAV------TRKTTTKTHGIIFSARNGMLFITLPSGRSLSYVKPKIGENRFGG 547 Query: 581 N-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + T++ R +YG K ENIVQA SRDIL M IV+ +HDE+V Sbjct: 548 DCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMKTL--RCCSIVMHIHDEVV 605 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E A + M P WA GL L+A+GYE+ Y+K Sbjct: 606 IEADRRMSLQA--VCDQMGRTPPWANGLQLRADGYETDFYKK 645 >gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 645 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 215/698 (30%), Positives = 318/698 (45%), Gaps = 77/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M ++ ID ET S + L K G+ KYAE D ++LF + D V++ D + +P+ + Sbjct: 1 MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + VT A N+ FER L + + + W C+++ A + GLP +LK VG L L Sbjct: 61 AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 QK+EEGK+LI F CK RN P + E W+LF EY K DV I R Sbjct: 121 DRQKLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQAR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L+ P+ E E + +DQ INDRG VD + + + ++LT + + Sbjct: 181 LKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQNLTD--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L WL + GL +E L ++ ++L + T +V R + S+++V K Sbjct: 239 PNSPLQLMDWLHGK-GLSVESLAKSEVTKMLKT---ATGDVREVLELRQQLSKTSVKKYM 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + +D R RG QF GA+RTGR++G + QNLP+ + + + + Sbjct: 295 AMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTLVKDGDFELL 354 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D ++S +R+ + + VVAD A IEARVLAW+AGEQW L F D+Y Sbjct: 355 DMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDVFREHGDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 T +R F+ + D R GK L+ GY G A M + +G+ LV Sbjct: 415 CETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMGAVESGMKEEELQPLV 474 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 WR + + + W ++ + Sbjct: 475 D-----------------------------------------LWRASNPHIVQFWWDVDR 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTT- 583 A + ++ R + + L + LPSGR L Y +G NR + Sbjct: 494 AVKTCVK------RRVEVETHGIRCVYKSGVLFIRLPSGRELAYAKPRIGENRFGGESVT 547 Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 T++ R T+GGKL ENI Q +RD+L M G+DIV+ VHDEIV E P Sbjct: 548 YEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVHDEIVLEVP 607 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M NP WAKGLPLKA+GYE + YRK Sbjct: 608 YGVS-SVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644 >gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6] gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6] Length = 645 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 211/700 (30%), Positives = 334/700 (47%), Gaps = 81/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID E+ S D++KCG KY+E D ++LFA+ D PVE+ D +P+ + Sbjct: 1 MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 ++L + V A N+ FER L L+ + W CT+V A + GLP +L VG L Sbjct: 61 KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 L QK+ EGK+L+ FC RN P H + WR F Y DV V I Sbjct: 121 GLDKQKLSEGKDLVRYFCMPCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRDVEVEVAIQ 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++L P++ + E ++LDQ INDRG +D+ LA + + +V + +++++L+ LT + Sbjct: 181 QKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKKLTG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + ++++WL + GL +E L + + ++ + +V R + ++S+V K Sbjct: 239 ENPNSVLQMRSWLS-QHGLEVESLGKAAVKELIEQTNDD--KLKEVLLLRQQLAKSSVRK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP--- 347 + D R RG QF GA+RTGR++G QNLP+ S + + Sbjct: 296 YQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARELVRNGEYE 355 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +++S+ +R+ I G K +V+D + IEARV+AW+AGE+W+ + F G D Sbjct: 356 LLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWRKEVFRNGGD 415 Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + ++ F V + V R GK+ ELALGY G A M + GL + Sbjct: 416 IYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMGALNMGLTEDELQP 475 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 LV + WR+ + +++LW ++ Sbjct: 476 LVAS-----------------------------------------WRETNPAITKLWWDI 494 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR----- 577 A + + G + + + + + + L SGR L Y +G NR Sbjct: 495 DSAAKGCVSVGA------KTETHGITFEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAA 548 Query: 578 -SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 +Y TT++ R +YG K ENIVQA++RDIL M N Y IV VHDE++ E Sbjct: 549 VTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNLKD--YRIVGHVHDEVIIE 606 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P E + +M+ P+WAKGL L A+GYE Y+K Sbjct: 607 VPK--EVTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644 >gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 662 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 208/718 (28%), Positives = 319/718 (44%), Gaps = 100/718 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ++L KCG+ KYAE ++LF + D PV++ D +P+ + Sbjct: 1 MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF--------------------NLDIPIHRWICTLV 98 +AL + VT A N+ FER L + W C++V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154 + GLP +L+ VG L L +QKM+EG+ELI F CK RN P H + W Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCIPCKETKANGGRTRNLPQHALDKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 LF Y K DV V I +RL+ P+ + E ++LDQ INDRG +D+ LA + Sbjct: 181 NLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVALDA 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R L L+ T + + + ++ WL + GL + L + Q +L + ++ Sbjct: 241 KSRESLMAALKERTG--LENPNSVIQMLDWL-EQHGLKTDSLGKKNVQELLKTAQEP--- 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K + DGR RG QF GA+RTGR++G QNLP+ Sbjct: 295 LRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354 Query: 333 SRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + D ++S +R+ + G K VV+D + IEARV+ Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447 +W+AGE+WK + F G+D+Y +T ++ F V + + + R GK+ ELA GY G A Sbjct: 415 SWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSVGA 474 Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + M + G+ + Sbjct: 475 LKAMGALDMGIPEEE-----------------------------------------LGNL 493 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++WR + + + W ++ A + TI+ + V + L + LPSGR Sbjct: 494 VQSWRSANPHIVDFWWQVDGAVKTTIKQRIPVW------VNNIRFFCQSGMLFIELPSGR 547 Query: 567 SLVY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 L Y +G NR + T++ + +YG K ENIVQ +SRDIL M Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQTL 607 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E P + + + M P WA+GL L+A+GY + Y+K Sbjct: 608 --RCCAIVGHVHDELIIECPK--DTSVDAICEEMGRTPPWAEGLVLRADGYACEFYQK 661 >gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 662 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 212/718 (29%), Positives = 320/718 (44%), Gaps = 100/718 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S IDL KCG+ KYAE + ++LF + D V++ D +PQ + Sbjct: 1 MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98 +AL + +VT A N+ FER L + + W C++V Sbjct: 61 DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154 A + GLP +LK VG+ LKL QKM+EGK LI F C RN P H E W Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQKMDEGKALIKYFSVPCAPTKANGGRTRNMPFHDPEKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F Y K DV V I +RL P+ + + +DQ INDRG +D+ L ++ Sbjct: 181 ETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLVAKAIEMDT 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 RT+L ++ +T + + ++++K WL GL + L + ++ + + Sbjct: 241 RSRTELTTAMKDIT--ELDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKT---APSE 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K T+ A+ DGR RG F GA+RTGRW+G + QNLP+ Sbjct: 295 LQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQLQNLPQN 354 Query: 333 SRSHEELDQIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + D +S +R+ I +G +L V+D + IEARV+ Sbjct: 355 HLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447 AW AGE W+ K F G D+Y + ++ F+V + V R GK+ ELALGY G A Sbjct: 415 AWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGA 474 Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + M + GL+ + LV Sbjct: 475 LKAMGAIEMGLSEDELPPLVDA-------------------------------------- 496 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 WRQ + + + W ++ +A + +++ + + L + LPSGR Sbjct: 497 ---WRQTNPHIVKFWWDVDRAVMEAVKHKHTTSS------YGLTFSCRSGMLFITLPSGR 547 Query: 567 SLVYRDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 +L Y G +Y T++ R +YG K ENIVQA SRDIL M Sbjct: 548 NLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDILCYAMKTL 607 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +IV+ +HDE+V E + +L M P WA+GL L+A+GY + Y+K Sbjct: 608 RN--CEIVMHIHDELVIEAD--PHMSLDVLCEQMGRTPPWARGLQLRADGYTTPFYKK 661 >gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] Length = 658 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 236/705 (33%), Positives = 335/705 (47%), Gaps = 82/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + TL ID ET S +D+ G KY E D ++LFA+ F+D PV++ D + +P + Sbjct: 5 IDTLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVF 64 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + ++ A N+ FER +K + P +W CT+V A + GLPS+L VG+ALK Sbjct: 65 YALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKF 124 Query: 119 --SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI F CK RN P H E W F EYCK DV V REI Sbjct: 125 EEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIR 184 Query: 173 KRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L +K EQ+LW LDQ INDRG D+ L + +L + LT + Sbjct: 185 NLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTG--L 242 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAVL 289 + ++K W+ G ++ LT+T+ ++ L + I++ R +++++ Sbjct: 243 ENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAKTSIK 302 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT- 348 K +T+ A DGR+RG LQF GA+RTGRW+G + QNLP+ + + Sbjct: 303 KYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGKF 362 Query: 349 -----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 S PD L S +R+ I EG + +V+D + IEARV+AW AGEQW+L F Sbjct: 363 QEVEFLFDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFS 419 Query: 404 TGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 T +Y + ++ F VA + K + R GK+ ELALGY G A M + Sbjct: 420 THGKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEE 479 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LVK+ WR + +++ W Sbjct: 480 LPGLVKS-----------------------------------------WRNANPNITKFW 498 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------- 573 ++ +A ++ I + + + D L + LPSGR L Y Sbjct: 499 WDVDKAAKKVIRERTTVNLQ-----YGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETF 553 Query: 574 -GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 G+ +Y + T++Q R TYG KL ENIVQA SRD L E M KAGYDIV+ VHD Sbjct: 554 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDIVMHVHD 613 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+V + P D + LM WA GLPLKA+GYE Y+K Sbjct: 614 EVVLDIPK-DRATVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657 >gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium siraeum V10Sc8a] Length = 660 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 214/716 (29%), Positives = 317/716 (44%), Gaps = 98/716 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ KY E D ++LF + D PV++ D +PQ + Sbjct: 1 MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD------------------IPIHRWICTLVLA 100 AL N +VT A N+ FER L + W CT++ + Sbjct: 61 AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK---GETHECLYDRNKP-NHREAWRL 156 GLP +L+ VG L L QK+ EGKELI FC+ RN P N + W Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQKLTEGKELIKYFCQPCAPTKANSGRTRNLPENAPDKWAS 180 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F Y DV V I ++L P+ E ++LDQ INDRG +D+ L + Sbjct: 181 FKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQAIDMDTRS 240 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 R +L ++ LT + + ++++K WL GL+++ L + +L + + Sbjct: 241 RAELTAAMKKLTA--LDNPNSVQQMKQWLSD-NGLNVDSLGKKEVAEMLKT---APAELQ 294 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 QV R + ++S+V K + +A+ +DGR RG QF GA+RTGRW+G + QNLP+ Sbjct: 295 QVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHL 354 Query: 335 SHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + + D +S +R+ + G K +V+D + IEARVLAW Sbjct: 355 PDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLAW 414 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQ 449 AGE W+ + FE G D+Y + ++ F V + V R GK+ ELALGY G A + Sbjct: 415 FAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALK 474 Query: 450 KMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 M + GL+ LV Sbjct: 475 AMGALEMGLSEGELQPLVTA---------------------------------------- 494 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 WR + + + W ++ +A ++ ++ + L + LPSGR L Sbjct: 495 -WRNSNQNIVKFWWDIDRAAMNAVKY------HMDSEICGIKFSYKSGMLFITLPSGRRL 547 Query: 569 VYRDV--------GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 Y G +Y T++ R TYG KL ENIVQA SRDIL M + Sbjct: 548 SYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRDILCYAMRTLSH 607 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 I + +HDE+V E + N + M P+WA GL L+A+GYE+ Y+K Sbjct: 608 --CFITMHIHDELVIEA--SLGVNLKSICEQMGRTPTWANGLKLRADGYETMFYKK 659 >gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] Length = 643 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 225/698 (32%), Positives = 337/698 (48%), Gaps = 79/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL K G+ KYAE D ++LFA+ +D V++ D + ++P+ + Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + +V A N+ FER L + W CT++ + GLP +L+ VGE LKL Sbjct: 61 SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM EGK LI F CK + RN +H E W F EY + DV I K+ Sbjct: 121 DKQKMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIKKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+S E E +++DQ INDRG +D L + + + R + LT + + Sbjct: 181 LSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIELTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + GL ++ L + + L + + +V R S+S+V K + Sbjct: 239 PNSPLQLKEWLNKK-GLEIDSLAKKDVESALKNTEGD---IKEVLELRQELSKSSVRKYD 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + D R RG +QF GA+RTGR+SG + QNL R + +L + + T Sbjct: 295 AMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETM 354 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + P I+S +R+ IA EG + +++D + IEARVLAW+AGEQW L AFE GED+Y Sbjct: 355 EILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENGEDIY 414 Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 T +R F V + V R GK+ LA GYQG A + M GL+ + Sbjct: 415 CRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMGGIEMGLSEDELQS-- 472 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +WR+ + + LW ++ Sbjct: 473 ---------------------------------------IVDSWREANPNIVSLWWDIDS 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSYLNTTT 584 ++ ++ R + + + +K L + LPS R L Y +G NR + Sbjct: 494 VVKRVVKT------RTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGESIV 547 Query: 585 R-------QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + + +YGGK ENIVQA++RDILAE MM K G++IV+ +HDE+V E Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE-- 605 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +D + + +M+ PSWA GL L A+G+ES+ Y+K Sbjct: 606 -SDSSSIEEINQIMSLVPSWAPGLILDADGFESEFYKK 642 >gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 652 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 220/698 (31%), Positives = 332/698 (47%), Gaps = 73/698 (10%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 L ID ET S +DL KCG+ +Y E D ++LFA+ +DD P+ + D +P+ + + Sbjct: 3 KILSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTK 62 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L + DV A+N+ FERT + +N +P +W CT V A + GLP L V + L L Sbjct: 63 DLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLD 122 Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175 +QK GK LI F CK RN P+H + W+ F +YCK DV V R I K++ Sbjct: 123 AQKDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRKKI 182 Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E P+ E +LW LDQ IND G +D L + T+LD E + LT + + Sbjct: 183 EKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTG--LDNP 240 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 +L WL + GL +++ L K ++ R S+++ K Sbjct: 241 NSTTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTKKYEA 299 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + AM SD R RG LQF GA+RT RW+G + QNLP+ + + + H + Sbjct: 300 MERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEAIE 359 Query: 354 P---DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 P ++S +R+ I S+G + +V+D + IEARV+AW+AGE W++K F++ +Y Sbjct: 360 LLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKIYE 419 Query: 411 TTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVK 467 + + F+V ++TK R GK+ ELALGY G A + M + GL+ + LV Sbjct: 420 ASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLDADELPDLVT 479 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 WR + ++ +LW ++ +A Sbjct: 480 A-----------------------------------------WRNSNPKIVKLWWDVDKA 498 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---------- 577 + + R + L + LPSGR L Y Sbjct: 499 AMTAVREHMPV-----RIQYGITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALTY 553 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 ++ + R TYG KL ENIVQAV+RD LA M+ AGYDI + VHDE++ + P Sbjct: 554 EGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDVP 613 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +TD + + +M+ WA GLPL+A+GYE++ Y+K Sbjct: 614 NTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651 >gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] Length = 662 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 207/718 (28%), Positives = 324/718 (45%), Gaps = 100/718 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M T+ ID ET S +DL KCG+ +Y ++LF + D PV++ D +P+ + Sbjct: 1 MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--------------------IPIHRWICTLV 98 +AL + V A N+ FER L + W C++V Sbjct: 61 DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAW 154 A + GLP +LK VG L+L+ QKM+EGK LI F C RN P + W Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQKMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPGKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F +Y + DV V I ++L P+ + +++DQ INDRG +D+ L + Sbjct: 181 ATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDMDT 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R++L ++++++T + + ++++K WL G+ ++ L + +L + P+ Sbjct: 241 RSRSELTEKMQAITN--LENPNSVQQMKQWLSD-NGMEVDSLGKKAVTALLKT---APPE 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 +V R + ++S+V K T+ A+ SD R RG F GA+RTGRW+G + QNLP+ Sbjct: 295 LTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQN 354 Query: 333 SRSHEELDQIITHLPTSITS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + + D +S +R+ I +G + VAD + IEARV+ Sbjct: 355 HLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447 AW AGE+WK AF GED+Y +T R F+ + V + RA GK+ ELA GY G A Sbjct: 415 AWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACGYGGSTGA 474 Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + M + GL+ + + Sbjct: 475 LKAMGALEMGLSEDELPD-----------------------------------------I 493 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +WR + ++ + W ++ +A ++N K + + L + LPSGR Sbjct: 494 VSSWRDANQQIVKFWWDVDKAVMAAVKNHKTTRLGR------LAFFWQAGMLFITLPSGR 547 Query: 567 SLVY--RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 +L Y VG NR +Y T++ R +YG K ENIVQA SRDIL M Sbjct: 548 NLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDILCNSMKML 607 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 D+ + +HDE+V E + L M P+WA GL L+A+GY Y+K Sbjct: 608 RH--CDVCMHIHDELVIEAD--PRVSLDTLCEQMGRVPAWADGLVLRADGYVCDFYKK 661 >gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4] gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Lactobacillus gasseri ATCC 33323] gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4] Length = 644 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 335/701 (47%), Gaps = 84/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +PQ + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + W C+ V + + GLP +L VG L L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+S E E +++DQ INDRG +D L + + + + Q + LT +++ Sbjct: 181 LERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQKLTG--LAN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL G++++ L++ + ++L + T + QV + R S+S+V K Sbjct: 239 PNSPLQLKDWLNQR-GMNIDSLSKASVAQLLQT---TTGKVHQVLSLRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII------THL 346 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + T L Sbjct: 295 AMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNTTAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+G VAD + +EARV+AW++GE+W+ KAF E Sbjct: 355 SMLYDSVPD---VLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFANNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 D+Y + ++ F V + V + R GK+ ELALGY G A + M + GL Sbjct: 412 DIYCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATNLGLTEEELH 471 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 LV + WR + + W + Sbjct: 472 SLV-----------------------------------------QMWRNASPHIVQFWWD 490 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + +A ++ I++ + + + L L SGR L Y +G NR Sbjct: 491 IDKAAKECIKS------HLPQATHGIKFIYRSGCMFLRLRSGRKLCYSKPKIGINRFGSE 544 Query: 582 TTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + T ++ R TYG KL ENIVQA SRD+LAE M AG +V+ +HDE V Sbjct: 545 SITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDEAVI 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P ++ + +MT P WA GL L A G+ S Y+K Sbjct: 605 DAP--ANYSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643 >gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] Length = 662 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 205/718 (28%), Positives = 318/718 (44%), Gaps = 100/718 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ++L+KCG+ KYAE D ++LF + D V + D +PQ + Sbjct: 1 MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98 +AL + V A N+ FER L + W C++V Sbjct: 61 DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154 A + GLP +L+ VG L L QK+ EGK+LI F C RN P H + W Sbjct: 121 WAATMGLPLSLEGVGAVLGLEKQKLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPDKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F +Y DV I RL P+ + +++DQ INDRG +D+ L ++ Sbjct: 181 EAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEMDT 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R++L ++ +T + + ++++K WL GL + L + ++ + P+ Sbjct: 241 RSRSELTAAMKDMTA--LDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKT---APPE 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K T+ A+ DGR RG F G +RTGRW+G + QNLP+ Sbjct: 295 LQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLPQN 354 Query: 333 SRSHEELDQIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + D +S +R+ I +G + V+D + IEARV+ Sbjct: 355 HLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKA 447 AW AGE W+ K FETG D+Y + ++ F+V + + R GK+ ELALGY G A Sbjct: 415 AWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSVGA 474 Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + M + GL+ + LV Sbjct: 475 LKAMGAIEMGLSEDELPPLVDA-------------------------------------- 496 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 WRQ + + + W ++ ++ + ++ + + L + LPSGR Sbjct: 497 ---WRQTNPNIVKFWWDVDRSVMEAVKYKHTTSS------YGLTFSCRSGMLFITLPSGR 547 Query: 567 SLVY--RDVGNNR------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 +L Y +G N+ +Y +T++ + +YG K ENIVQA SRDIL M Sbjct: 548 NLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDILCYAMKTL 607 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ +HDE+V E + +L M P WAKGL L+A+GY + Y+K Sbjct: 608 --RCCSIVMHIHDELVIEAD--PHMSLDVLCEQMGRTPPWAKGLKLRADGYVTPFYKK 661 >gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 213/701 (30%), Positives = 324/701 (46%), Gaps = 84/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L + G +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + W C+ V + + GLP +L+ VG L L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ FC K RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + + Q + LT +++ Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTG--LAN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ + L + + ++L + T QV R S+S+V K Sbjct: 239 PNSPLQLKNWLH-QQGVETDSLAKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII------THL 346 + +AM DG + G LQF GA+RTGRW+G + QNLPR S E + + T L Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+G VAD + +EARV+AW++GE+W+ AF E Sbjct: 355 AMLYESVPD---VLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463 D+Y + ++ F V + + + R GK+ ELALGY G A + M +T GL + Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDE-- 469 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + WR + + W + Sbjct: 470 ---------------------------------------LPPLVQMWRNASPHIVQFWWD 490 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSY-- 579 + +A ++ I K + + + +Y + L L SGR L Y +G NR Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPQPKIGINRFGSE 544 Query: 580 -----LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 N T ++ R TYG KL ENIVQA SRD+LA M AG +V+ +HDE V Sbjct: 545 SITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVI 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + + +MT P WA GL L A G+ Y+K Sbjct: 605 DAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] Length = 650 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 237/701 (33%), Positives = 330/701 (47%), Gaps = 78/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DLTK G+ YAE D ++LF + FDD PV+L D +P + Sbjct: 1 MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + ++ A N+ FERT + FN +P +W CT V A + GLP L V + L L Sbjct: 61 NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK GK LI F CK RN P H + W F YCK DV V R+I K Sbjct: 121 KQQKDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIRKT 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+ E +LW LDQ IND G VD L + KL + LT + + Sbjct: 181 LERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLTG--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + + +LK WL GL +E L + + +L + T Q+ R ++++V K Sbjct: 239 PKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTESST--VKQMLELRQEMAKTSVKKYL 296 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + A DGR+RG LQF GA+RTGRW+G + QNLPR S +LDQ L Sbjct: 297 AMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIK--DLDQARQLLKAGDYE 354 Query: 353 DPDPL-----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + L ++S +R+ + EG + +VAD + IEARV+AW+A E+W++ F T Sbjct: 355 MLELLFESVPTVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGK 414 Query: 408 LYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + + F+V ++TK R GKV ELALGYQGG A M Sbjct: 415 IYEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG------------- 461 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A+++ + K WRQ + + W + Sbjct: 462 ---------------------------ALKEGLTEEELPGLVKLWRQSSPNIVKFWYDTE 494 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN------- 576 A + ++ + ++ + L + LPSGR L Y + NN Sbjct: 495 AAAIKAVKEKTTVELH-----HGIHFIYESGILFIRLPSGRRLAYIKPRIQNNPRLDKPA 549 Query: 577 RSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +Y T+Q R YTYGGKL ENIVQAV+RD LAE ++ AGY V+ VHDE V Sbjct: 550 LTYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVMHVHDESVM 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E P + +M WA GLP++A+G+ES Y+K Sbjct: 610 EMPHGV-GSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649 >gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26] gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55] gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34] gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79] gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291] gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58] gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291] Length = 652 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 232/705 (32%), Positives = 344/705 (48%), Gaps = 84/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G+ +Y + + ++LFA+ FD+ V++ D V+D +P+ + Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A N+ FERT + N+++ + W CT++ A + GLP +L +V +ALK Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI FCK RN P H E W F EYCK DV V REI Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 173 KRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L + +E +LWYLDQ IND G VD L + KL +E +T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ +LK WL + G + LT+ + +L +++ R S++++ K Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDEN--VVRILELRKLMSKTSIKK 296 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A +D R+RG LQF GA+RTGRW+G + QNLP+ +L + + Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356 Query: 349 ----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 S PD ++S +R+ I SEG + +V+D + IEARV+AW AGE+W+L F + Sbjct: 357 LIELLYDSVPD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNS 413 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + + F V + K R GK+ ELALGY G A M + GL+ Sbjct: 414 HGKIYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIKMGLDEEE 473 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV T WR + +++ W Sbjct: 474 LQPLVTT-----------------------------------------WRNANPNITKFW 492 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------- 573 ++ +A ++ I++ + + + + L + LPSGR L Y Sbjct: 493 WDVDKAAKKAIKDRTIVKLQ-----HGIKFIYNPGVLFIELPSGRRLSYLRPKIEPHTTF 547 Query: 574 -GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 G+ +Y + T++Q R TYG KL ENIVQA +RD L E M N T AGY IV+ VHD Sbjct: 548 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+V + D + + +M SWAKGLPLKA+GYE Y+K Sbjct: 608 ELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] Length = 687 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 262/690 (37%), Positives = 383/690 (55%), Gaps = 26/690 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123 Query: 123 ME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PHLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF G DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+++ ++ + + + AC+ +K+ WR+ H + W EL + Sbjct: 483 PRDVIREAKSWYNESVKHKSTFGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NNRSYL--NTTTR 585 I + K + +++D L + LPSGR++ Y N +Y+ N+ +R Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSYSR 596 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E PDT++FN Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDK 656 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON] gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON] Length = 657 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 212/711 (29%), Positives = 322/711 (45%), Gaps = 91/711 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LFID ET S DL K G+ +Y+E D V+LF + DD V + D +P + Sbjct: 1 MRELFIDIETYSGTDLGKSGVYRYSEAPDFEVLLFGYCADDDEVRVIDLASGEALPTEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD-------------IPIHRWICTLVLARSNGL 105 +AL + V AHN+ FER L + W CT+V + GL Sbjct: 61 DALTDETVVKWAHNAQFERVCLSRWLERQGINLKALNGNSNFLNPASWRCTMVWSAYLGL 120 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYC 161 P +L+ QK+ EGKELI F CK RN P H + W + EY Sbjct: 121 PLSLEGAALVTGAEKQKLTEGKELIRYFSSPCKPTKSNGGRTRNLPVHAPDKWEKYKEYN 180 Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 DV I KRL P+ E + + LDQ INDRG C+D+ L + RT L Sbjct: 181 ARDVETEMAIMKRLSKFPVPEDEWKYYILDQEINDRGICLDMDLIREAIRCDRRSRTVLT 240 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + +T + + + ++K W F E GL E L + + +L + + +V Sbjct: 241 EAVRDITD--LDNPNSVAQMKAW-FAENGLETETLGKAAVKELLKTAPESF---REVLAL 294 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++S+V K + A+ SDGR+RG LQF GA+RTGR++G + QNLP+ Sbjct: 295 RQDLAKSSVKKYTAMENAVCSDGRVRGLLQFYGANRTGRFAGRLIQVQNLPQNHLPDLVQ 354 Query: 340 DQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + + + ++S+ +R+ + G K +VAD + IEARV+AW+AGEQ Sbjct: 355 ARQLVKSGDFDALEILYDSVPGVLSELIRTAFVPMPGYKFIVADFSAIEARVIAWLAGEQ 414 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS- 453 W+ + F + +Y + ++ F V ++TK R GK+ ELALGY G A + M + Sbjct: 415 WRNEVFASHGKIYEASASQMFRVPIEEITKGSPLRQKGKIAELALGYGGSVGALKAMGAL 474 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 GL + LV WR Sbjct: 475 DMGLAEDELQPLVTA-----------------------------------------WRAA 493 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + ++ LW ++ +A + + A + + L + LPSGR L Y Sbjct: 494 NPNITRLWWDVDRAAKTAVREKTA------EQTHNILFEYRSGFLFITLPSGRKLAYVKP 547 Query: 574 GN--NRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 NR ++ T ++ R +YG K ENIVQA+SRDIL M + G+ I Sbjct: 548 RIEANRFGSDSITYEGVGASKKWERIESYGPKFVENIVQAISRDILCYAMQRLSSMGFSI 607 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V+ +HDE+V ET + + + ++ +M+ P WA+GL L A+G+E + Y+K Sbjct: 608 VMHIHDEVVIET--SCDVSPEIVCRIMSETPPWAEGLFLCADGFECQFYKK 656 >gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010] Length = 687 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 263/690 (38%), Positives = 382/690 (55%), Gaps = 26/690 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF G DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+++ + + + + + AC+ +K+ WR+ H + W EL + Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585 I + K + +++D L + LPSGR++ Y N +Y+ N+ +R Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R TYGGKL ENI QA +RDILA M AGY IVLTVHDE++ E PDT++FN Sbjct: 597 KWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDK 656 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L++++P WA +PL A G+E+ Y+K Sbjct: 657 ALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 646 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 203/702 (28%), Positives = 313/702 (44%), Gaps = 84/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L ID ET S +L K G+ +Y E D ++LF + D V++ D +P + Sbjct: 1 MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 AL + V A N+ FER L L I W C++V A + GLP +L+ VG Sbjct: 61 TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 LKL QK+ EGK+LI F C RN H + W F +Y D+ Sbjct: 121 VLKLDKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETEMS 180 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++L P+ + ++LDQ INDRG +D+ L + R++L ++ LT Sbjct: 181 IQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLT-- 238 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL + G+ + L + +L + + R + ++S+V Sbjct: 239 ELDNPNSVQQMKQWL-ADNGMETDTLGKKIVAELLKTAPLDLADV---LSLRQQLAKSSV 294 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + A+ +DGR RG QF GA+RTGRW+G + QNLP+ + + Sbjct: 295 RKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLEDLAEARALVRFGD 354 Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + D +S +R+ + G +L+V+D + IEARV+AWMAGE+W+ F G Sbjct: 355 FDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQDVFAKG 414 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462 D+Y + ++ F V + + R GK+ ELALGY G A + M + GL + Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLEEDEL 474 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 LV WRQ + + + W Sbjct: 475 PQLVDA-----------------------------------------WRQANPCIVKFWW 493 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR--- 577 ++ +A + + ++ + L + LPSGR L Y +G N+ Sbjct: 494 DVDKAAMEAVRY------KRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIGENKFGG 547 Query: 578 ---SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 +Y T++ R +YG K ENIVQA +RDIL M IV+ VHDEIV Sbjct: 548 QCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQTLQH--CSIVMHVHDEIV 605 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M PSWAKGL L+A+GYE+ Y+K Sbjct: 606 IEAD--PRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645 >gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378] Length = 684 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 208/701 (29%), Positives = 325/701 (46%), Gaps = 82/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L K G+ +Y A+D VILF + D V++ D + +P+ + Sbjct: 39 MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 +AL + +T A N+ FER L + W C++V + GL +L+ VG Sbjct: 99 DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 L L QK+ EGK+LI F C RN + W+ F Y K DV + Sbjct: 159 VLGLEKQKLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEAEIQ 218 Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I +RL P+ + ++LDQ INDRG VD+ + D+ KL ++ +T Sbjct: 219 IQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQITN- 277 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K+WL E GL +E L + K+ + +V + R + ++S+V Sbjct: 278 -LDNPNSVQQMKSWLC-ENGLEMETLGKKAVA---EKLKETDGELNEVLSLRQQLAKSSV 332 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + A+ SD R RG QF GA+RTGR++G + QNLP+ + + I Sbjct: 333 KKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRNGD 392 Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 T + D +S +R+ + G K +VAD + IEARVL+W+AGE W+ K F +G Sbjct: 393 VETLEMLYEDIPDTLSQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWRTKVFASG 452 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F V + V R GK+ ELALGY G A + M Sbjct: 453 GDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG----------- 501 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A+E + + AWR + +++ W + Sbjct: 502 -----------------------------ALEMGLEEEELKPLVNAWRMSNPNITQFWWD 532 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + +A +Q ++ K+ ++ + L ++LPSGR L Y +G N+ Sbjct: 533 VDRAAKQCVKENKS------QETHSIEFHCFSGMLFIVLPSGRRLAYVKPRIGENQFGGE 586 Query: 582 TT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + T++ R +YG K ENIVQA+SRDIL M + Y IV VHDE++ Sbjct: 587 SVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSLRH--YRIVAHVHDEVII 644 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ET + + + + M+ P WAKGL L A+GYE Y+K Sbjct: 645 ET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683 >gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] Length = 649 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 210/701 (29%), Positives = 319/701 (45%), Gaps = 82/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + TL D ET S ++L KCG+ +Y A+D ++LFA+ D V++ D +P ++ Sbjct: 4 IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114 ALE+ V AHN+ FER I W CT+ A GLP +L VG Sbjct: 64 SALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGA 123 Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTRE 170 L L QKM EGK+LI FC RN P + E W F Y DV E Sbjct: 124 VLGLGKQKMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAEME 183 Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++L P+ + ++L + IND G VD+ + ++ TKL +++ +T Sbjct: 184 IEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEIT-- 241 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++++K WL GL + L + +L K +V R + ++S+V Sbjct: 242 ELDNPNSVQQMKDWLSD-NGLETDTLGKKAVAELL---KDAPEHLAEVLKLRQQLAKSSV 297 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K + A+ SDGR+RG FLGA+RTGR+S + QNLP+ + + I Sbjct: 298 KKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNGD 357 Query: 349 SITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 S + D +S +R+ + EG K +VAD + IEARVL+W+AGEQW+ + F G Sbjct: 358 SEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFANG 417 Query: 406 EDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y + ++ F V + V R GK+ ELALGY G A + M Sbjct: 418 GDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMG----------- 466 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 A+E + + AWR + + + W + Sbjct: 467 -----------------------------ALEMGLEEEELKPLVNAWRASNPNIVKFWWD 497 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + + ++ I+ K+ ++V + L ++LPSGR L Y ++G N Sbjct: 498 VDREVKKCIKEKKS------QEVQNIKFHYMSGMLFIVLPSGRKLAYVKPNIGENIFGGE 551 Query: 582 TT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + T++ R +YG K ENIVQA+SRDIL M + IV VHDE++ Sbjct: 552 SVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMKTL--STCSIVAHVHDEVII 609 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + M+ M P WAKGL L A+GYE Y+K Sbjct: 610 EADQS--LSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648 >gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] Length = 661 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 204/716 (28%), Positives = 313/716 (43%), Gaps = 98/716 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S ID++KCG KYAE + ++LF D+ PV ++D +P + Sbjct: 2 MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100 AL + ++ A N+ FER L P W CT++ + Sbjct: 62 AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRL 156 GLP +L+ VG LKL QKM+EGK+LI FC K RN P H + W Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQKMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKWET 181 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F Y + DV V I +RL P+ +++DQ IND G +D+ + + Sbjct: 182 FKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVENAIAFDERS 241 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 ++ L ++++T + + + ++K WL G+ E L + ++ +A Sbjct: 242 KSALITAMKNITN--LDNPNSVVQMKQWLSD-NGVETESLGKKEVAGLIKETDGDISKA- 297 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 R++ ++S+V K + A+ DGR G QF GA+R+GRW+G + QNLP+ Sbjct: 298 --LKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQNHM 355 Query: 335 SHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 S + + T D D +S +R+ IA G K +V+D + IEARVLA Sbjct: 356 SDLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARPGYKFIVSDYSAIEARVLAH 415 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQ 449 +AGE W+ K F G+D+Y + ++ F V + + R GK+ ELALGY G A + Sbjct: 416 LAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAELALGYGGSVGALK 475 Query: 450 KMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 M + GL LV + Sbjct: 476 SMGALEMGLTEEELQPLVDS---------------------------------------- 495 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 WR + ++ W + A + I+ +V ++ L++ PSGR L Sbjct: 496 -WRSSNPMITAFWWNVDNAIKTAIK------MHIPTEVNGIHFCYKSGMLLIKRPSGRVL 548 Query: 569 VY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 Y +G NR + T++ R +YG K ENIVQAVSRDIL M Sbjct: 549 SYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSRDILCNAMKTLRH 608 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E + + + + M + W G+ L+A+GYE+ Y+K Sbjct: 609 --CFIVGHVHDELIIEC--SSGVDLNEICKQMGRSLDWMPGILLRADGYETNFYKK 660 >gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 644 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 329/701 (46%), Gaps = 84/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + + W C+ V + + GLP +L+ VG L L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+ E E +++DQ INDRG +D L + + +V + Q + LT +++ Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKKLTG--LAN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ + L++ + ++L + T QV R S+S++ K Sbjct: 239 PNSPLQLKDWLH-QQGIKTDSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSIKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHL 346 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + L Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F E Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 D+Y + ++ F V + + + R GK+ ELALGY G A + M + GL + Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDE-- 469 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + WR + + W + Sbjct: 470 ---------------------------------------LPPLVQMWRNASPHIVQFWWD 490 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY-- 579 + +A ++ I K + + + +Y + L L SGR L Y +G NR Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPQPKIGINRFGSE 544 Query: 580 -----LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 N T ++ R TYG KL ENIVQA SRD+LA M AG +V+ +HDE V Sbjct: 545 SITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVI 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + + +MT P WA GL L A G+ Y+K Sbjct: 605 DAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] Length = 655 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 240/706 (33%), Positives = 337/706 (47%), Gaps = 83/706 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ID+ G KY E D ++LFA+ F+D PV++ D +PQ + Sbjct: 1 MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 +AL + DV A N+ FER+ +K +L P +W CT++ A + GLPS+L VG+ALK Sbjct: 61 DALYDPDVIKTAFNANFERSAIKFGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKALK 120 Query: 118 L--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREI 171 L QKM+EGK LI FCK RN P H E W F EYCK DV V REI Sbjct: 121 LEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVEREI 180 Query: 172 FKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L ++EQ+LW LDQ INDRG D+ L + +L + LT Sbjct: 181 RNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG-- 238 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAV 288 + + ++K W+ G ++ LT+T+ ++ K L + I++ R +++++ Sbjct: 239 LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAKTSI 298 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 K +T+ A DGR+RG LQF GA+RTGRW+G + QNLP+ + + Sbjct: 299 KKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGK 358 Query: 349 ------SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 S PD L S +R+ I EG + +V+D + IEARV+AW AGEQW+L F Sbjct: 359 FEEVEFLFDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVF 415 Query: 403 ETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 T +Y + ++ F V + K + R GK+ ELALGY G A M + Sbjct: 416 STHGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEE 475 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 LVK+ WR + +++ Sbjct: 476 ELPGLVKS-----------------------------------------WRNANPNITKF 494 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV------- 573 W ++ +A ++ I + + + D L + LPSGR L Y Sbjct: 495 WWDVDKAAKKAIRERTTVNLQ-----YGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHET 549 Query: 574 --GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 G+ +Y + T++Q R TYG KL ENIVQA SRD L E M K GYDIV+ VH Sbjct: 550 FSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYDIVMHVH 609 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE+V + P D + LM WA GLPLKA+GYE Y K Sbjct: 610 DEVVLDIPK-DRATVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654 >gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] Length = 687 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 263/690 (38%), Positives = 382/690 (55%), Gaps = 26/690 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF G DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+++ + + + + + AC+ +K+ WR+ H + W EL + Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585 I + K + +++D L + LPSGR++ Y N +Y+ N+ +R Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R TYGGKL ENI QA +RDILA M AGY IVLTVHDE++ E PDT++FN Sbjct: 597 KWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDK 656 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L++++P WA +PL A G+E+ Y+K Sbjct: 657 ALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932] gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196] gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196] Length = 652 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 226/705 (32%), Positives = 343/705 (48%), Gaps = 84/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G+ +Y + + ++LFA+ FD+ V++ D V+D +P+ + Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A N+ FERT + N+++ + W CT++ A + GLP +L +V +ALK Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI FCK RN P H E W F EYCK DV V REI Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 173 KRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L + +E +LWYLDQ IND G VD L + KL +E +T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ +LK WL + G + LT+ + +L +++ R S++++ K Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDEN--VVRILELRKLMSKTSIKK 296 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A +D R+RG LQF GA+RTGRW+G + QNLP+ +L + + Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356 Query: 349 ----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 S PD ++S +R+ I SEG + +V+D + IEARV+AW+AGE+W+L F + Sbjct: 357 LIELLYDSVPD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNS 413 Query: 405 GEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ F + + K + R GK+ EL+ GY G A M + GL Sbjct: 414 HGKIYEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEE 473 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + AWR + +++ W Sbjct: 474 LQ-----------------------------------------PIVTAWRNANPNITKFW 492 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------- 573 ++ +A ++ I++ + + + + L + LPS R L Y Sbjct: 493 WDVDKAAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTF 547 Query: 574 -GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 G+ +Y + T++Q R TYG KL ENIVQA +RD L E M N T AGY IV+ VHD Sbjct: 548 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+V + D + + +M SWAKGLPLKA+GYE Y+K Sbjct: 608 ELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11] gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11] gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1] Length = 687 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 262/690 (37%), Positives = 381/690 (55%), Gaps = 26/690 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 5 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF G DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+++ + + + + AC+ +K+ WR+ H + W EL + Sbjct: 483 PRDVIREAKSWYNESVKRKSTFGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585 I + K + +++D L + LPSGR++ Y N +Y+ N+ +R Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E PDT++FN Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDK 656 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171] gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171] Length = 687 Score = 688 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 262/690 (37%), Positives = 382/690 (55%), Gaps = 26/690 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF G DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+++ + + + + + AC+ +K+ WR+ H + W EL + Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585 I + K + +++D L + LPSGR++ Y N +Y+ N+ +R Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R TYGGKL ENI QA +RDILA M AGY IVLTVH+E++ E PDT++FN Sbjct: 597 KWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFNDK 656 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L++++P WA +PL A G+E+ Y+K Sbjct: 657 ALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605] gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605] Length = 687 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 261/690 (37%), Positives = 383/690 (55%), Gaps = 26/690 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ + Sbjct: 5 LWGDLETYCDIPINN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI FCK R H E WR F Y D+ RE+ KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPKWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C+IA GKK+VV+DL+ IE R+LAW+AGE+WKL AF G DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+++ + + + + + AC+ +K+ WR+ H + W EL + Sbjct: 483 PRDVIREAKSWYGESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRT 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585 I + K + +++D L + LPSGR++ Y N +Y+ N+ +R Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E+PDT++FN Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDK 656 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718] gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718] Length = 687 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 263/690 (38%), Positives = 381/690 (55%), Gaps = 26/690 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 5 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF G DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+++ + + + + + AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELECTVRT 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585 I + K + +++D L + LPSGR++ Y N +Y+ N+ +R Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSR 596 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E+PDT++FN Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDK 656 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4] Length = 649 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 235/700 (33%), Positives = 347/700 (49%), Gaps = 77/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ Y+E D ++LFA+ DD VE+ D +P + Sbjct: 1 MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +A+ + V A+N+ FERT L F + +P +W CT V A GLP L V + LKL Sbjct: 61 KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKR 174 QKM+EGK LI F CK RN P H A W F +YCK DV V REI K+ Sbjct: 121 QGQKMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIRKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE PL + EQELW LDQ IND G +D L + + + +L +E LT + + Sbjct: 181 LEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEAVRLTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL L+ GL ++ L + + ++S + P+ ++ R S+++V K Sbjct: 239 PNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVEN--PEVKRLLELRRAMSKTSVKKYE 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349 + ++ SD R+RG LQF GASRTGRW+G + NLPR S ++ + + Sbjct: 296 AMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEAL 355 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S +R+ I S+G + VVAD + IEARV+AW+AGE+W++ F++ +Y Sbjct: 356 EVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSHGKIY 415 Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + A+ F V + K R GK+ ELALGY G A +M + GL + LV Sbjct: 416 EASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMGALEMGLTEDELPELV 475 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 AWR+ + ++ +LW + Sbjct: 476 -----------------------------------------SAWREANPKIVKLWWGIEA 494 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------- 577 A + ++ + + + K L + LPSGRSL Y +G + Sbjct: 495 AAIKAVKEKAVV-----KMQHGLTFHYTKGILFITLPSGRSLAYVRPKIGIDERFGKEQL 549 Query: 578 SYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 +Y T ++Q R TYGGKLTENI+QA++RD LA M+ +AGY I VHDE++ + Sbjct: 550 TYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDEVILD 609 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + + ++M + WA GLPL A+ +E+ Y+K Sbjct: 610 VPIAT-GSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648 >gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 213/701 (30%), Positives = 329/701 (46%), Gaps = 84/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L+N ++ A N+ FER L + W C+ V + + GLP +L+ +G L L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+ E E +++DQ INDRG +D L + + +V + Q + LT +++ Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--LAN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ L++ + ++L + T QV R S+S+V K Sbjct: 239 PNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHL 346 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + L Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F E Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463 D+Y + ++ F V + + + R GK+ ELALGY G A + M +T GL + Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDE-- 469 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + WR + + W + Sbjct: 470 ---------------------------------------LPPLVQMWRNASPHIVQFWWD 490 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581 + +A ++ I K + + + +Y + L L SGR L Y +G NR Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPQPKIGINRFGSE 544 Query: 582 TTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + T ++ R TYG KL ENIVQA SRD+LAE M G +V+ +HDE V Sbjct: 545 SITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVI 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + + LMT P WA GL L A G+ S Y+K Sbjct: 605 DAPFNR--SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643 >gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] Length = 687 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 264/690 (38%), Positives = 381/690 (55%), Gaps = 26/690 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 5 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP AL + E L + K Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+DV LA VD E+ +L + + +T G V ++ + Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 303 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF G DLY Sbjct: 363 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YA++F++AP V K R IGKVMEL LGY GG AF A GL+L+ A+ N Sbjct: 423 LAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+++ + + + + + AC+ +K+ WR+ H + W EL Sbjct: 483 PRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELECTVRT 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585 I + K + +++D L + LPSGR++ Y N +Y+ N+ +R Sbjct: 542 AIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSR 596 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++ E+PDT++FN Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDK 656 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 657 ALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK72] Length = 643 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 221/698 (31%), Positives = 328/698 (46%), Gaps = 79/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLTKCG+ +Y + ++LFA+ D++ ++ D V +P+ + Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT VLA S GLP +L+ VG L + Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QKM+EG LI F CK + +RN P+H E W LF YCK DV V + I R Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L PL EQ + LDQ INDRG VD L + ++ + L+ + + Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL E G+ ++ L + + L + +++ R+ S+++V K Sbjct: 239 PNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADG---EVLEMLKLRLLMSKTSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + SDGR+ G LQF GA+RTGRW+G + QNLP+ L + + T Sbjct: 295 AIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQFETL 354 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D + ++S+ +R+ + G + +VAD A IEARVLAW++GE W+L+ FE G D+Y Sbjct: 355 DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + + F V + R GK+ ELALGY G A M + GL LV Sbjct: 415 CASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEELQPLV 474 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 WR + + W E+ + Sbjct: 475 N-----------------------------------------QWRSANPHIVAFWWEIDK 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583 +Q E R+ + + + + L + LPSGR L Y + Sbjct: 494 VAKQVYET------REPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547 Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 +++ TR TYG KL ENIVQ ++RD+LA GM+ + G IVL VHDE V E Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEV- 606 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + + L+ + P WA+GLPL+A+GY + Y+K Sbjct: 607 --REESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 643 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 218/698 (31%), Positives = 335/698 (47%), Gaps = 79/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +DL K G+ KYAE D ++LFA+ DD V++ D ++P+ + Sbjct: 1 MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT++ + GLP +L+ VGE LKL Sbjct: 61 SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM EGK LI F CK + RN P+H W +F EY + DV EI K+ Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIKKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E E +++DQ INDRG +D L + + ++ R + LT + + Sbjct: 181 LSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIELTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + GL ++ L + + + + + +V R S+S+V K + Sbjct: 239 PNSPLQLKEWLNKK-GLEIDSLAKKDVESAIKNAEGD---IKEVLELRQELSKSSVRKYD 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + R RG +QF GA+RTGR+SG + QNL R + +L + + T Sbjct: 295 AMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETM 354 Query: 353 DP---DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + P I+S +R+ I EG + +++D + IEARVLAW+A EQW L AFE GED+Y Sbjct: 355 EFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDAFENGEDIY 414 Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 T +R F V + + R GK+ LA GYQG A + M GL+ + Sbjct: 415 CRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMGGIEMGLSEDELQS-- 472 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +WR+ + + LW ++ Sbjct: 473 ---------------------------------------IVDSWREANPNIVSLWWDIDS 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSYLNTTT 584 ++ ++ R + + + + +K L + LPS R L Y +G NR + Sbjct: 494 VVKRVVKT------RSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESVV 547 Query: 585 R-------QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + + +YGGK ENIVQA++RDILAE MM K G++IV+ +HDE+V E Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE-- 605 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +D + + +M+ P WA GL L A+G+ES+ Y+K Sbjct: 606 -SDSSSIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642 >gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK1057] Length = 643 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 221/698 (31%), Positives = 328/698 (46%), Gaps = 79/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLTKCG+ +Y + ++LFA+ D++ ++ D V +P+ + Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT VLA S GLP +L+ VG L + Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QKM+EG LI F CK + +RN P+H E W LF YCK DV V + I R Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L PL EQ + LDQ INDRG VD L + ++ + L+ + + Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL E G+ ++ L + + L + +++ R+ S+++V K Sbjct: 239 PNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADG---EVLEMLKLRLLMSKTSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + SDGR+ G LQF GA+RTGRW+G + QNLP+ L + + T Sbjct: 295 AIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQVETL 354 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D + ++S+ +R+ + G + +VAD A IEARVLAW++GE W+L+ FE G D+Y Sbjct: 355 DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDIY 414 Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + + F V + R GK+ ELALGY G A M + GL LV Sbjct: 415 CASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEELQPLV 474 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 WR + + W E+ + Sbjct: 475 N-----------------------------------------QWRSANPHIVAFWWEIDK 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583 +Q E R+ + + + + L + LPSGR L Y + Sbjct: 494 VAKQVYET------REPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547 Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 +++ TR TYG KL ENIVQ ++RD+LA GM+ + G IVL VHDE V E Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEV- 606 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + + L+ + P WA+GLPL+A+GY + Y+K Sbjct: 607 --REESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 650 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 220/703 (31%), Positives = 317/703 (45%), Gaps = 82/703 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET +D+ K G KY E ++LFA+ F+D PVE+ D +PQ +K Sbjct: 1 MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL N + A N+ FE LK I W CT+V + GLP +L VG+ L+ Sbjct: 61 TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120 Query: 119 --SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI F CK RN P H E W +F +Y K DV V R I Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVEVERAIR 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P + EQ LW LDQ INDRG D+ L + + +L +E LT + Sbjct: 181 NKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATELTG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 S+ +LK W+ G ++ LT+ + ++ +K + ++ R +++++ K Sbjct: 239 SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKESKD--EKVKKILELRQLMAKTSIKK 296 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 T+ A DGR+RG LQF GA+RTGRW+G + QNLP+ + + Sbjct: 297 YETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDDARNFIRTGQFD 356 Query: 349 ----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 S PD L S +R+ I EG + +VAD + IEARV+AW AGEQW+L F Sbjct: 357 KVEFLYDSIPDTL---SQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQWRLDVFNN 413 Query: 405 GEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 D+Y + ++ F V + + R GK+ ELALGY G A M + + Sbjct: 414 NGDIYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKKNIPEDE- 472 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + K WR +++ W Sbjct: 473 ----------------------------------------LPGLVKDWRDASPHITKFWW 492 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN------ 576 ++ +A ++ I ++ + + D L + LPSGR L Y Sbjct: 493 DVDKAAKKAIRERTTVVLQ-----FGLKFIYDPGVLFIQLPSGRKLAYIRPKIEPGPYDK 547 Query: 577 --RSYLN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 +Y T++Q T TYG K+ ENIVQA +RD L M G+ IV+ VHDE+ Sbjct: 548 PIITYEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGFHIVMHVHDEL 607 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +C+ P + + + WA GLPLKA+GYE Y K Sbjct: 608 ICDVPKG-KGTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649 >gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 644 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 210/701 (29%), Positives = 327/701 (46%), Gaps = 84/701 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + + W C+ V + + GLP +L+ VG L L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+ E E +++DQ INDRG +D L + + +V + Q + LT +++ Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--LAN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + + L++ + ++L + T QV R S+S++ K Sbjct: 239 PNSPLQLKDWL-QQQDIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSIKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHL 346 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + L Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F E Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463 D+Y + ++ F V + + + R GK+ ELALGY G A + M + GL + Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDE-- 469 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + WR + + W + Sbjct: 470 ---------------------------------------LPPLVQMWRNASPHIVQFWWD 490 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY-- 579 + +A ++ I K + + + +Y + L L SGR L Y +G NR Sbjct: 491 VDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPQPKIGINRFGSE 544 Query: 580 -----LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 N T ++ R TYG KL ENIVQA SRD+LAE M +V+ +HDE V Sbjct: 545 SITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAVI 604 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + P + + LMT P WA GL L A G+ S Y+K Sbjct: 605 DAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643 >gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255] Length = 652 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 226/705 (32%), Positives = 341/705 (48%), Gaps = 84/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G+ +Y + + ++LFA+ FD+ V++ D V+D +P+ + Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A N+ FERT + N+++ + W CT++ A + GLP +L +V +ALK Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QKM+EGK LI FCK RN P H E W F EYCK DV V REI Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 173 KRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L + +E +LWYLDQ IND G VD L + KL +E +T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ +LK WL + + LT+ + +L ++ R S++++ K Sbjct: 239 NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDEN--VVRTLELRKLMSKTSIKK 296 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A +D R+RG LQF GA+RTGRW+G + QNLP+ +L + + Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356 Query: 349 ----SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 S PD ++S +R+ I SEG + +V+D + IEARV+AW+AGE+W+L F + Sbjct: 357 LIELLYDSVPD---VLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNS 413 Query: 405 GEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ F V + K + R GK+ EL+ GY G A M + GL Sbjct: 414 HGKIYEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEE 473 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + AWR + +++ W Sbjct: 474 LQ-----------------------------------------PIVTAWRNANPNITKFW 492 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------- 573 ++ +A ++ I++ + + + + L + LPS R L Y Sbjct: 493 WDVDKAAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTF 547 Query: 574 -GNNRSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 G+ +Y + T++Q R TYG KL ENIVQA +RD L E M N T AGY IV+ VHD Sbjct: 548 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHD 607 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+V + D + + +M SWAKGLPLKA+GYE Y+K Sbjct: 608 ELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 663 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 207/714 (28%), Positives = 318/714 (44%), Gaps = 98/714 (13%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 TL ID ET S IDL KCG+ KY+E D V+LFA+ D V + D + +P + +A Sbjct: 6 TLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEILQA 65 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLARS 102 L + V A N+ FER L + P W C+++ + Sbjct: 66 LVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWSAY 125 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFG 158 GLP +L+ VG L L QK++EGK+LI FCK RN P H + W LF Sbjct: 126 MGLPLSLEGVGAVLGLEEQKLKEGKDLIRYFCKPCAATKVNGGRTRNLPEHAPDKWELFK 185 Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y K DV V I K+L P+ E ++LDQ INDRG +D+ + +I + + Sbjct: 186 AYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAIRIDAISKA 245 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 L ++ LT + + + ++K WL + G+ + L + +L + V Sbjct: 246 TLMATMQDLTD--LENPNSVAQMKGWLAAK-GVDTDSLDKKAVIELLKTVPTD---VADV 299 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + ++S+V K + A+ DGR RG QF GA+R+GRW+G + QNLP+ Sbjct: 300 LTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQNLPQNHMED 359 Query: 337 EELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 ++ + I + + ++S+ +R+ I EG K VAD + IEARV+A +A Sbjct: 360 LDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAIEARVIAHLA 419 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKM 451 E+W++K F D+Y + + F V + ++ R GK+ ELALGY G A M Sbjct: 420 KERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGSVGALTSM 479 Query: 452 AS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + GL LV W Sbjct: 480 GALDMGLAEEELQPLVDA-----------------------------------------W 498 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + + + W ++ A ++ I+ A + L ++LPSGR L Y Sbjct: 499 RAANPNIVQFWWDVDNAVKRAIKERTA------TKTHGIRFIYKSAMLFIVLPSGRRLAY 552 Query: 571 --RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 +G N+ + T ++ R +YG K ENIVQA+SRDIL + + Sbjct: 553 VKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYALRTLSH-- 610 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV VHDE++ E + + + M P W +GL L+A+GYE++ Y+K Sbjct: 611 CFIVGHVHDEVIIEC--RQDASLEAICEQMGRVPEWIEGLLLRADGYETQFYKK 662 >gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] Length = 663 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 198/716 (27%), Positives = 320/716 (44%), Gaps = 98/716 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + T+ ID ET S +DL KCG+ KY ++ ++LF + D V + D +P + Sbjct: 4 IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100 AL + ++T A N+ FER L P W C++V + Sbjct: 64 MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRL 156 GLP L G L L QK+ EGKELI F CK RN P H W + Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQKLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKWEM 183 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F +Y K DV V I +L P+ + E ++LDQ INDRG +D+ + + Sbjct: 184 FKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFDEKS 243 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 + L +++ +T + + ++++K WL GL ++ L + VL++ + Sbjct: 244 KAVLADKMQEMTG--LENPNSVQQMKQWLSC-NGLEMDSLGKKEVAAVLNTAPEP---LK 297 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 V R + ++S+V K + A+ SDGR RG F GA+R+GRW+G + QNLP+ Sbjct: 298 TVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQNHM 357 Query: 335 SHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 S E + + + D +S +R+ + +G + +V+D + IEARVL+ Sbjct: 358 SDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDFSAIEARVLSH 417 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQ 449 +AGE+W+ F +G D+Y + ++ F V + V R GK+ ELALGY G A + Sbjct: 418 LAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALK 477 Query: 450 KMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 M + GL + LV Sbjct: 478 SMGALDMGLEEDELKPLVD----------------------------------------- 496 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 WR+ + + +LW ++ +A ++ ++ R+ + + L + LPSGR L Sbjct: 497 MWREANPNIVKLWWDVDRAVKKAVKQ------REPSSIGSITFSYKSGMLFIGLPSGRCL 550 Query: 569 VY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 Y +G N+ + T++ R +YG K ENIVQA+SRDIL + + Sbjct: 551 SYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIRTLSH 610 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 I VHDE++ E + + ++ M P W +G+ L+A+GYE++ Y+K Sbjct: 611 --CFICGHVHDELIIEC--SKSVSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662 >gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 662 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 213/721 (29%), Positives = 313/721 (43%), Gaps = 106/721 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M T+ ID ET S ++L KCG+ KYAE ++LF + D V++ D +P + Sbjct: 1 MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98 +AL + VT A N+ FER L + W C+++ Sbjct: 61 DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154 + GLP +L+ G LKL SQKM+EGK+LI F CK RN P H + W Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQKMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPDKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 LF Y K DV V I +RL+ P+ + ++LDQ INDRG +D LA I Sbjct: 181 TLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVIDA 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R L L+ T + + + ++ WL + G+ + L + Q +L + ++ Sbjct: 241 RSRDSLMAVLKGKTG--LENPNSVIQMIGWL-EQHGMKTDSLGKKQVQELLKTAEEP--- 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K + D R RG QF GA+RTGR++G QNLP+ Sbjct: 295 LRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354 Query: 333 SRSH-----EELDQI-ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386 E + Q L S PD ++S +R+ + +G K VV+D + IEA Sbjct: 355 HLPDLAEARELVRQGNYEALELLYDSIPD---VLSQLIRTAFVPRKGMKFVVSDFSAIEA 411 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGG 444 RVL+W+AGE W+L F D+Y + + F V + V R GK+ ELALGY G Sbjct: 412 RVLSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGS 471 Query: 445 AKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A + M + GL N LV++ Sbjct: 472 TGALKAMGALDMGLTENELYPLVQS----------------------------------- 496 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 WR + + + W ++ + I+ + A + L + LP Sbjct: 497 ------WRSANPHIVDFWWQVDATVKTAIKEQIPMRA------GCIRFLCQSGMLFIQLP 544 Query: 564 SGRSLVY--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 SGR L Y +G NR + T++ R +YG K ENIVQ +SRDIL M Sbjct: 545 SGRRLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCYAM 604 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 IV VHDE++ E + + M P WA+GL L+A+GYE + Y+ Sbjct: 605 QTL--RCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADGYECEFYQ 660 Query: 675 K 675 K Sbjct: 661 K 661 >gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens LL3] Length = 648 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 233/699 (33%), Positives = 333/699 (47%), Gaps = 76/699 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ Y E D ++LFA+ FD+ P+++ D +P + Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL ++ V A+N+ FERT + FN +P +W CT V A + GLP L V +ALKL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 S QK +EGK LI F CK RN P H + W F YC DV V R I R Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIKNR 180 Query: 175 LEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + L EQELW LDQ INDRG +D L + + L E + LT + + Sbjct: 181 ISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--LPN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LKTWL + GL + L + + ++ + +V R ++++V K Sbjct: 239 PNSTAQLKTWL-EDKGLSVSSLAKDKIEELIEKTDDAS--VHRVLRLRQEMAKTSVKKYL 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + +A+ D R+RG LQF GASRTGRW+G + QNLP+ + + + + Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAI 355 Query: 353 DPDPLQ---IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + Q ++S VR+ I SEG + V+D + IEARV+AW+AGE W+L F T +Y Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIY 415 Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + A+ F V +TK R GKV ELALGYQGG A +M + T GL+ + LV Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELPGLV 475 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 K WR + ++ + W ++ Sbjct: 476 KA-----------------------------------------WRTANKKIVQFWYDVEA 494 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--------- 577 A + ++ K + + + + L + LPSGR L Y Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549 Query: 578 SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 +Y + + R TYGGKL ENIVQAV+RD LA ++ AGY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVLDV 609 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + + +M WAKGLPL A+G+ + Y+K Sbjct: 610 PRG-KNELDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK115] Length = 645 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 221/698 (31%), Positives = 326/698 (46%), Gaps = 77/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLTKCG+ +Y + ++LFA+ D+ ++ D +P+ + Sbjct: 1 MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + V A N+ FER L + W CT V A S GLP +L+ VG L + Sbjct: 61 SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM+EG+ LI F C+ + +RN P+H E W LF YCK DV V + I KR Sbjct: 121 EEQKMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIRKR 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L PL EQ L+ LDQ INDRG VD L + ++ Q L+ + + Sbjct: 181 LSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSG--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL G+ ++ L + + L + +++ R+ S+++V K Sbjct: 239 PNSVSQLKGWL-ENQGVFMDSLGKKDVAKQLKEVDG---EILEMLKLRLLMSKTSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + SD R+ G LQF GA+RTGRW+G + QNLP+ +L + + Sbjct: 295 AMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQLKAL 354 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D + ++S+ +R+ + G + +VAD A IEARVLAW++GE W+L+ FE G D+Y Sbjct: 355 DLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQGGDIY 414 Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + A F V + V R GK+ ELALGY G A + M + GL+ LV Sbjct: 415 CASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALDMGLDEEELQPLV 474 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 WR + + W + + Sbjct: 475 N-----------------------------------------QWRMANPHIVAFWWVIDK 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583 A ++ E R+ + V + + + LPSGR L Y + Sbjct: 494 ASKEVYET------REPQKVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGKPGLT 547 Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 ++ +R TYG KL ENIVQ ++RD+LA GMM K DIVL VHDE V E Sbjct: 548 YEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIVLHVHDEAVVEVK 607 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E + + L + P WA+GLPL+A+GY + Y+K Sbjct: 608 EG-EASVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644 >gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] Length = 648 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 231/699 (33%), Positives = 331/699 (47%), Gaps = 76/699 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL KCG+ Y E D ++LFA+ FD+ P+++ D +P + Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL ++ V A+N+ FERT + FN +P +W CT V A + GLP L V +ALKL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 S QK +EGK LI F CK RN P H + W F YC DV V R I R Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIKNR 180 Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + EQELW LDQ INDRG +D L + + L E + LT + + Sbjct: 181 ISKFEPLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--LPN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + GL + L + + ++ + +V R ++++V K Sbjct: 239 PNSTAQLKKWLEDK-GLSVSSLAKDKIEELIEKTDDAS--VHRVLRLRQEMAKTSVKKYL 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + +A+ D R+RG LQF GASRTGRW+G + QNLP+ + + + + Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAI 355 Query: 353 DPDPLQ---IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + Q ++S VR+ I SEG + V+D + IEARV+AW+AGE W+L F T +Y Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIY 415 Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + A+ F V +TK R GKV ELALGYQGG A +M + T GL+ + LV Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELPGLV 475 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 K WR + ++ + W ++ Sbjct: 476 KA-----------------------------------------WRTANKKIVQFWYDVEA 494 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--------- 577 A + ++ K + + + + L + LPSGR L Y Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549 Query: 578 SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 +Y + + R TYGGKL ENIVQAV+RD LA ++ AGY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETVLDV 609 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + + +M WAKGLPL A+G+ + Y+K Sbjct: 610 PRG-KNELDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 266/693 (38%), Positives = 380/693 (54%), Gaps = 27/693 (3%) Query: 1 MA-TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 M TL++D ET S + K G YAE V ++LFA+ +++ V++WD +P LK+ Sbjct: 1 MKNTLWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQ 59 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK-- 117 AL + + I AHNS+F+RT+L + I + RW T+V A ++GLP AL A+ E L Sbjct: 60 ALSDPNTIIYAHNSHFDRTMLNHS-GIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVP 118 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L K +EGK LI FCK R H E W+ F Y D+ RE+ KRL Sbjct: 119 LDKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLP 178 Query: 177 PLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E E W+ DQ INDRG +D+ LA + V++E+ +L + + LT V ++ Sbjct: 179 SWNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAAT 238 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + L + G+ L D+ ++T +R ++ P ++ R+++S ++ K L Sbjct: 239 QRDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLP-LRELLAIRLQSSTTSTSKYKAL 297 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352 + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP+ +D+ I L Sbjct: 298 MNGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLI 357 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GED 407 D +Q+ S +R C++A EGKKLVV+DL+ IE R+LAW+AGE WK+ AF G D Sbjct: 358 YDDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGAD 417 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 LY YAR+FN++P V K R IGKVMEL LGY GG AF A T L+L+ A Sbjct: 418 LYKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAAL 477 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 N P+ DA ++ + E + + + T C+ +K+ WR H W EL Sbjct: 478 PNIPPKVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDT 536 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---RSYL--NT 582 I + ++ + +++DK L ++LPSGR++ Y N+ SY+ N Sbjct: 537 VRHAISSPGITFPCRK-----LKVRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNP 591 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 +R+ R TYGGKL EN+ QA +RD+LA M GYDIVLTVHDE++ E PD F Sbjct: 592 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAF 651 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 N L L+ +NP WA LPL A G+E+ YRK Sbjct: 652 NHEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684 >gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] Length = 651 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 211/706 (29%), Positives = 320/706 (45%), Gaps = 89/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET +DL K G+ YAED ++L A D+ PV ++D +P + Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLPDQIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 +AL N + A N+ FER L P + W C++V + GLP +L Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL QK++EG ++I FC K RN P+H + W F Y K DV Sbjct: 122 EGVGTVLKLKEQKLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKRDV 181 Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +L P+ E ++ DQ INDRG +DV I + ++K+ +EL+ Sbjct: 182 EVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT + + + ++ WL E G+ L + + +L + +V R +A Sbjct: 242 ELTG--LENPNSVLQMIGWL-REHGVTTNSLDKKAVKELLKVVD---AKTTKVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K +V + DGR RG QF GA+RTGRW+G + QNLP+ + + + Sbjct: 296 AKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARDL 355 Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ Sbjct: 356 FKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 FE G+D+Y + ++ F V + D R GK+ ELA GY G A + M + GL+ Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMGLD 475 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 LV + WRQ + + Sbjct: 476 EQELQPLVDS-----------------------------------------WRQANPNIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573 W ++ +A + I+ K + + + K K L + LPSGR L Y Sbjct: 495 LFWWDVDKAVKTAIKYQK------QTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGEN 548 Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 G + +Y T T ++ R +YG K ENI+QA+SRDILA M + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRIVGHVH 606 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DEI+ E + N + LM P W + L+A+GYE Y+K Sbjct: 607 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] Length = 640 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 225/698 (32%), Positives = 327/698 (46%), Gaps = 82/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET SP+ L K G+ KY D ++LF++ D V D +P + Sbjct: 1 MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL ++ VT A+N+ FERT L A + W C++V A + GLP +LK VG+ L L Sbjct: 61 DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE- 176 +QKM+EGK+LI FC + + R P + W+LF Y DV V I ++L Sbjct: 121 DAQKMDEGKDLIKHFCVPDDNS---QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLAD 177 Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 P+ E + +DQ INDRG +D LA I + R + LT + + Sbjct: 178 FPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--LDNPAS 235 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 +L+ WL + G +E + + + + T Q + R SRS+V K ++ Sbjct: 236 PLQLQEWLN-QHGCPIESMAKESVD---DALANATGQVREALELRQELSRSSVAKYRKMI 291 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP------TS 349 + +D R G LQF GA+RTGRW+G + QNLPR + + Sbjct: 292 DVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEML 351 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 +S PD L S +R+ I S + +VAD + IEARVLAW+AGE+ L AF+ GEDLY Sbjct: 352 YSSVPDTL---SQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLY 408 Query: 410 VTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 T + F V + V + R GK+ LA GY G A + M + GL+ + Sbjct: 409 CATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLSEDELQ--- 465 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + AWRQ + + +LW+++ Sbjct: 466 --------------------------------------PIVDAWRQANPNIVQLWHKVDN 487 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT 584 A + I G+ + R + +K L + LPSGR L Y +G NR + T Sbjct: 488 AATRAISTGRPLTLRN------LGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSIT 541 Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 R+ + TYGGKL ENIVQA +RD+LAE + AG+ IV+ +HDE+V + P Sbjct: 542 YWGQGVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDEP 601 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + LM P WA+GLP+ A GYE Y+K Sbjct: 602 INSGTTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639 >gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] Length = 644 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 326/700 (46%), Gaps = 82/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L CG+ +YA E ++LFA+ +D P ++ D MP+ + Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L + V A N+ FER + F L + W CT V A LP +L+ VGEAL L Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 +KM EGK+LI F CK RN P + E W LF YC DV V ++I + Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ +EQEL+ +DQ INDRG VD L + + + ++ + + Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL + G+ ++ L + + ++ + + ++ R+ S+++V K Sbjct: 239 PNSVSQLKDWLNEK-GIEVDSLAKAAVEELVEKTEG---EVSEMMKLRLSMSKTSVKKYE 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---- 348 + ++ DGR+ G LQF GA+RTGRW+G + NLP+ EL + I Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDLV 354 Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S P +++S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F Sbjct: 355 ELLYDSTP---EVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAG 411 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y T ++ F++ ++TK RA GKV LA Y G A M + + Sbjct: 412 KIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEEELK- 470 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + ++WR + + W E+ Sbjct: 471 ----------------------------------------GLVQSWRTANPHIVNYWYEI 490 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NN 576 A + ++ RK V V + L + LPSGR L Y + Sbjct: 491 DGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSES 544 Query: 577 RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 SY T R+ TR +YG K ENIVQA +RD+LAE M+ K G+DIV +HDE+V E Sbjct: 545 VSYEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLE 604 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P+ + + +M P W +GLPLKA G+ES Y+K Sbjct: 605 VPEGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 655 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 228/706 (32%), Positives = 321/706 (45%), Gaps = 83/706 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TLF D ET SP+ L K G+ Y E D ++LF++ D PVE+ D + MP + Sbjct: 1 MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109 AL + DV AHN+ FER L A + + +W CT+V + GLP +L Sbjct: 61 AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPN-HREAWRLFGEYCKGDV 165 A+ LKL QK G++LI +FC T RN P+ W F +Y + DV Sbjct: 121 DAIAAVLKLDVQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRRDV 180 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V + I RL P+ E + + LDQ IND G +D L + + R + Sbjct: 181 EVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT + + +LK WL G LE L + L + T +V R Sbjct: 241 KLTG--LDNPNSPIQLKQWLATR-GCELESLAKAEVDSALDT---ATGAVKEVLELRGDL 294 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K + SDGR RG +QF GA RTGR++G + QNLPR + + + Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTL 354 Query: 344 THLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + +S +R+ I S G + +VAD + IEARV+AW+AGE L+ Sbjct: 355 VRTGNLDALELLYESVPDTLSQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGETSTLE 414 Query: 401 AFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+DLY T +R F V + V + R GK+ LA GY G A + M Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG------ 468 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A+ + + AWRQ + + Sbjct: 469 ----------------------------------ALNMGLAEHELKPIVDAWRQANPHIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 LW ++ +A I + + I R R + + LPSGR L Y +G N Sbjct: 495 GLWADVEEAAIAAISSRQPIRLRNLR------FSVESGIFFIELPSGRRLAYVQPRLGEN 548 Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R TT R+ + TYGGKL ENIVQA++RD+L GM KAG+ IV+ VH Sbjct: 549 RWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQIVMHVH 608 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DEIV + P+ F + LM++ P+WA+GLPL A+GYE YRK Sbjct: 609 DEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 674 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 211/714 (29%), Positives = 325/714 (45%), Gaps = 96/714 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L +D ET S ++L KCG+ KYAE D ++LF + D V++ D +P+V+ Sbjct: 17 LENLSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 76 Query: 59 EALENTDVTIVAHNSYFERTVLKACF----------------NLDIPIHRWICTLVLARS 102 AL + VT A N+ FER L L + W CT++ + + Sbjct: 77 SALTDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSAT 136 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFG 158 GLP +L+ VG L L QK+ EGK LI FC RNK H E W F Sbjct: 137 LGLPMSLENVGIVLGLDKQKLTEGKNLIKYFCLPCNPTKVNGGRTRNKYFHDKEKWEQFK 196 Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y K DV V I ++L P+ + +YLDQ INDRG +D + ++ +T Sbjct: 197 SYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAIKLDLEVKT 256 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 L EL+ +T + + + ++++WL + GL +E L + + L + K + +V Sbjct: 257 HLMSELKRVTG--LENPNSVLQMRSWL-KKHGLEMESLGKKEVAKELKTVGK---ELAEV 310 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + ++S+V K + A D R RG +F GA+RTGR++G + QNLP+ Sbjct: 311 LRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNLPQNHLPD 370 Query: 337 EELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + + + D +S +R+ I G K +VAD + IEARVLAW+A Sbjct: 371 LAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGLKFIVADFSAIEARVLAWLA 430 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKM 451 GE+W+++ F G+D+Y ++ ++ F+V + V R GK+ ELALGY G A + M Sbjct: 431 GEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAM 490 Query: 452 AS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + GL + LV W Sbjct: 491 GALDMGLTEDELQPLVDA-----------------------------------------W 509 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + V+ LW ++ +A +Q + ++ + LI+ LPS R L Y Sbjct: 510 RSSNPMVTTLWWDVDRAVKQCVHEHVSV------RTHNIVFTYKSGFLIIKLPSKRCLYY 563 Query: 571 RDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 G + +Y +T++ R +YG K ENI QA++RDIL M + Sbjct: 564 VKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILIYAMQTLKE-- 621 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 Y IV VHDE + ET + + + LM P WA+GL L+A+GYE + Y+K Sbjct: 622 YRIVAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECEFYKK 673 >gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] Length = 644 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 212/700 (30%), Positives = 330/700 (47%), Gaps = 82/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L CG+ +YA E ++LFA+ +D P ++ D +P + Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L + V A+N+ FER + F L + W CTLV A LP +L+ VGEAL L Sbjct: 61 EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 +KM EGK+LI F CK RN P + E W LF YC DV V ++I + Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIRNK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ +EQ+L+ +DQ INDRG VD L + + + ++ ++ + + Sbjct: 181 LAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL + G+ ++ L + + ++ + + ++ R+ S+++V K Sbjct: 239 PNSVSQLKDWLNEK-GIEVDSLAKAAVEELVENTQGD---VAEMMKLRLAMSKTSVKKYE 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---- 348 + ++ DGR+ G LQF GA+RTGRW+G + NLP+ EL + + Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRYDLV 354 Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F Sbjct: 355 ELLYDSTPD---VLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAG 411 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y T ++ F++ ++TK RA GKV LA Y G A M + + Sbjct: 412 KIYEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGALNFVEEEELK- 470 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + ++WR + + W E+ Sbjct: 471 ----------------------------------------GLVQSWRTANPHIVNYWYEI 490 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NN 576 A + ++ RK V +V + L + LPSGR L Y + Sbjct: 491 DGAVKAAVKE------RKMTKVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSES 544 Query: 577 RSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 SY T R+ TR +YG K ENIVQA +RD+LAE M+ K G+DIV +HDE+V E Sbjct: 545 VSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLE 604 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P+ + + +M P W +GLPLKA G+ES Y+K Sbjct: 605 VPEGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2] gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2] Length = 648 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 233/699 (33%), Positives = 329/699 (47%), Gaps = 76/699 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL K G+ Y E D ++LFA+ FDD PV++ D +P + Sbjct: 1 MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL ++ V A+N+ FERT + FNL + +W CT V A + GLP L V +ALKL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 S+QK + GK LI F CK RN P H E W F YC DV V R I R Sbjct: 121 SAQKDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIKNR 180 Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + E +LW LDQ INDRG +DV L + + L E + LT + + Sbjct: 181 ISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLTG--LPN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL E GL + L + + ++ + T +V R ++++V K Sbjct: 239 PNSTAQLKKWL-EEKGLTISSLAKDKIEELIENTNDET--VHRVLRLRQEMAKTSVKKYL 295 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + +A+ D R+RG LQF GASRTGRW+G + QNLP+ + + + Sbjct: 296 AMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIEDLDTARNLLKGGHYEAI 355 Query: 353 DPDPLQ---IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + Q ++S VR+ I SEG + V+D + IEARV+AW+AGE+W+L+ F T +Y Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKIY 415 Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + A+ F V +TK R GKV ELALGYQGG A +M + GL LV Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALNMGLAEGELPELV 475 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 K WR + ++ + W ++ Sbjct: 476 KA-----------------------------------------WRTANKKIVKFWYDVEA 494 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN------RSYL 580 A + ++ K + + + + L + LPSGR L Y + L Sbjct: 495 AAIKAVKERKPVKLQ-----HGLTFLYESGILFVQLPSGRRLAYAKPKLELDERFGKEAL 549 Query: 581 NTTTR----QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + + R TYGGKL ENIVQA +RD LA +M AGY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAVLDV 609 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + + +M SWAKGLPL A+G+ + Y+K Sbjct: 610 PRG-KNELDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647 >gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] Length = 649 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 230/702 (32%), Positives = 341/702 (48%), Gaps = 81/702 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DLT CG+ Y A D ++LF + +DD PVEL D +P + Sbjct: 1 MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 A+E+ +V A N+ FER L N + W CT + A GLP L VG ALKL Sbjct: 61 NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK GK+LI F CK RN P+H E W+ F +YC DV V RE+ ++ Sbjct: 121 KVQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVRRK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +E P+ KE +LW LDQ IND G VD+AL + + ++L+ E ++LT + + Sbjct: 181 IERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAKTLTK--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL E GL +E L++ Q +L+ + ++ R ++S++ K Sbjct: 239 PNSVAQLKEWL-KEQGLEVESLSKQAVQNLLTDADG---EIERLLTLRQEMAKSSIAKYA 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349 + ++ D R+RG QF GA+RTGRW+G +F QNLP+ E+ +++ Sbjct: 295 AVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKEL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S+ +R+ +I +G + +VAD + IEARVLAW+A E W L F+ +Y Sbjct: 355 ELLYESVPIVLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGKIY 414 Query: 410 VTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463 T +R F V ++ K + RA GKV LA GYQGG A + M + GL+ Sbjct: 415 EQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGADKMGLS----- 469 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 T + + +AWR + R+ W + Sbjct: 470 ------------------------------------DTELDDIVRAWRSANQRIVRFWYD 493 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR------ 577 + +A + R+ + V ++ K + L + LPSGR L Y + Sbjct: 494 VEKAAVLAVRE------REPQRVGILRFKVENGILFITLPSGRRLAYIRPKIEKDLRFDK 547 Query: 578 ---SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 +Y +Q R+ TYGG+L ENIVQ +RD LAE M+ GY IV VHDEI+ Sbjct: 548 DGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEII 607 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + + L +M WA GLPL+A+G+E+ Y+K Sbjct: 608 TEM-RKGQGSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648 >gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 646 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 223/700 (31%), Positives = 324/700 (46%), Gaps = 83/700 (11%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 TL ID ET S +DL CG+ KY+ ++L A+ DD D + P+ E Sbjct: 3 RTLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIE 62 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L + VT A N+ FERT ++ W CT V A LP +L+ VG L L Sbjct: 63 MLFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLD 122 Query: 120 SQKMEEGKELIARFCKG---ETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRL 175 QKM EGKELI FC RN P + E WR F YC DV V ++I +RL Sbjct: 123 KQKMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQRL 182 Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P+ +EQE++ LDQ INDRG VD L + + + LT + + Sbjct: 183 AKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTG--LENP 240 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + +LK WL E GL ++ L + T + + + K +V R+ S+++V K Sbjct: 241 NSVSQLKLWL-KEKGLEVDSLAKDTVKDL---SMKAEGDVQEVLKLRLATSKTSVKKYEA 296 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT----- 348 + ++ ++ R+ G LQF GA+RTGRW+G + NLP+ EL + + Sbjct: 297 IDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEEVE 356 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 S P+ ++S+ +R+ +A G + +++D + IEARVLAW+AGE+W+L+ FET Sbjct: 357 LFYESTPN---VLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGK 413 Query: 408 LYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + + F+VA ++TK R GK+ ELALGY G A M + GL Sbjct: 414 IYEASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMGALKMGLTEEE--- 470 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + WR + ++ W + Sbjct: 471 --------------------------------------LPGLVSTWRSANPHITAFWWAV 492 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNN 576 +A + + K + V + L + LPSGR L Y Sbjct: 493 DEAAVTAVRDKKPSKVGR------VSFEYKSGILFVTLPSGRKLSYVKPRMMLNKFGREG 546 Query: 577 RSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 +Y +++ R TYG KL ENIVQA SRDILAE M+ K G+DIV VHDE+V E Sbjct: 547 LTYEGIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLE 606 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 PD + + + +M NP W +GLPLKA G+ES Y+K Sbjct: 607 VPDG-KSSVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645 >gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14] Length = 651 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 210/706 (29%), Positives = 325/706 (46%), Gaps = 89/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET IDL K G+ +YAED ++LFA ++ PV ++D +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDL-SKEKLPQDIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 EAL + V A N+ FER L P W C+++ + GLP +L Sbjct: 62 EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL QKM EG +LI FC K RN P+H + W F +Y + DV Sbjct: 122 EGVGTVLKLKDQKMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRRDV 181 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +RL+ P+ + + DQ INDRG +DV +I + ++ +EL+ Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + + ++ WL E G+ + L + + +L + + +V R +A Sbjct: 242 ALTS--LENPNSVLQMIGWL-REHGVTTDSLDKKAVKELLKTVDD---KTSKVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ E + + Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARKL 355 Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 356 FKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRSKV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 FE G+D+Y + ++ F V + ++ R GK+ ELA GY G A + M + GL+ Sbjct: 416 FELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMGALDMGLS 475 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 LV + WRQ + + Sbjct: 476 EEELQPLVNS-----------------------------------------WRQANPNIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573 LW ++ A + ++ + + L + LPSGR L Y Sbjct: 495 LLWWDVDNAVKTAVKEQIP------TSTHGIQFEVRSGILFITLPSGRKLAYIKPRIGEN 548 Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 G + +Y T T ++ R +YG K ENIVQA+SRDILA + + + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQLKE--FKIVGHVH 606 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P E + LM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECP--MEQKIDKIASLMGIAPDWMSDINLRADGYECLFYQK 650 >gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] Length = 651 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 210/706 (29%), Positives = 319/706 (45%), Gaps = 89/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET +DL K G+ YAED ++L A D+ PV ++D +P + Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLPDQIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 +AL N + A N+ FER L P + W C++V + GLP +L Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL QK++EG ++I FC K RN P+H + W F Y K DV Sbjct: 122 EGVGTVLKLKEQKLKEGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKRDV 181 Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +L P+ E ++ DQ IND G +DV I + ++K+ +EL+ Sbjct: 182 EVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT + + + ++ WL E G+ L + + +L + +V R +A Sbjct: 242 ELTG--LENPNSVLQMIGWL-REHGVTTNSLDKKAVKELLKVVD---AKTTKVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K +V + DGR RG QF GA+RTGRW+G + QNLP+ + + + Sbjct: 296 AKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARDL 355 Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ Sbjct: 356 FKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 FE G+D+Y + ++ F V + D R GK+ ELA GY G A + M + GL+ Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMGLD 475 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 LV + WRQ + + Sbjct: 476 EQELQPLVDS-----------------------------------------WRQANPNIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573 W ++ +A + I+ K + + + K K L + LPSGR L Y Sbjct: 495 LFWWDVDKAVKTAIKYQK------QTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGEN 548 Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 G + +Y T T ++ R +YG K ENI+QA+SRDILA M + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRIVGHVH 606 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DEI+ E + N + LM P W + L+A+GYE Y+K Sbjct: 607 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] Length = 644 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 214/700 (30%), Positives = 324/700 (46%), Gaps = 82/700 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S + L CG+ +YA E ++LFA+ +D P + D MP + Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L + V A N+ FER + F L + W CT V A LP +L+ VGEAL L Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174 +KM EGK+LI F CK RN P + E W LF YC DV V ++I + Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ +EQEL+ +DQ INDRG VD L + + + ++ + + Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL + G+ ++ L + + ++ + + ++ R+ S+++V K Sbjct: 239 PNSVSQLKEWLNEK-GIEVDSLAKAAVEELVEKTEG---EISEMMKLRLSMSKTSVKKYE 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---- 348 + ++ DGR+ G LQF GA+RTGRW+G + NLP+ EL + I Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDLV 354 Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F Sbjct: 355 ELLYDSTPD---VLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAG 411 Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y T ++ F++ ++TK RA GKV LA Y G A M + + Sbjct: 412 KIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEEELK- 470 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + ++WR + + W E+ Sbjct: 471 ----------------------------------------GLVQSWRTANPHIVNYWYEI 490 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NN 576 A + ++ RK V V + L + LPSGR L Y + Sbjct: 491 DGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSES 544 Query: 577 RSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 SY T R+ TR +YG K ENIVQA +RD+LAE M+ K G+DIV +HDE+V E Sbjct: 545 VSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEVVLE 604 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P+ + + +M P W +GLPLKA G+ES Y+K Sbjct: 605 VPEGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 645 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 215/697 (30%), Positives = 335/697 (48%), Gaps = 75/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +DL K G+ Y + ++LFA+ FD V++ D +P + Sbjct: 1 MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL N ++ A N+ FER L N + + W CT V A + G P +L V + L L Sbjct: 61 EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 + QKM+EGKELI F CK RN P H E W F +YC DV V R I K+ Sbjct: 121 TEQKMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIRKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+S EQ + LD INDRG VD+ L + + + E + LT + + Sbjct: 181 LSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQRLTG--LDN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +LK WL E G+ ++ L++ + + ++ N R++ +++++ K Sbjct: 239 PNSVAQLKQWLI-ENGVEVDSLSKKAVSDLAKEADG---EVERLLNLRLQLAKTSIKKYE 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349 + A+ D R+RG LQF GA+RTGRW+G + QNLP+ L + + Sbjct: 295 AIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLTLARNLVKSGDFDTL 354 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 ++S+ +R+ I + +VAD + IEARV+AW+AGE+W++ F T +Y Sbjct: 355 ALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKIY 414 Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + ++ F V ++TK R GK+ ELALGY G A M Sbjct: 415 EASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMG--------------- 459 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A++ + + AWRQ + +++LW ++ +A Sbjct: 460 -------------------------ALDMGVAEDELQGLVTAWRQANPNITKLWWDIDKA 494 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN--------RSY 579 + ++ ++ K + ++ + + + LPSGR L Y +Y Sbjct: 495 AIKAVKKKTTVMVGK------IKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDAVTY 548 Query: 580 LNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 T++ R TYG KL ENIVQA++RD+LAE M+ + GY+IV+ +HDEIV E P Sbjct: 549 EGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIVIEAPL 608 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M P+WA+ LPL+A+G+E + YRK Sbjct: 609 N-FGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644 >gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes] gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 651 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 212/706 (30%), Positives = 325/706 (46%), Gaps = 89/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET IDL K G+ +YAED ++LFA D+ PV ++D + +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 EAL + V A N+ FER L P + W C+++ + GLP +L Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL +KM EG +LI FC K RN P+H + W F +Y + DV Sbjct: 122 EGVGTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRRDV 181 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +RL+ P+ + ++ DQ INDRG +DV +I + K+ +EL+ Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + + ++ WL E G+ + L + + +L + + T QV R +A Sbjct: 242 ALTG--LENPNSVLQMIGWL-REHGVTTDSLDKKAVKGLLKTVDETTA---QVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ E + + Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEAREL 355 Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 356 FGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 FE G+D+Y + ++ F V + + R GK+ ELA GY G A + M + GL Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLT 475 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 LV + WR + + Sbjct: 476 EEELQPLVNS-----------------------------------------WRLANPNIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573 W ++ A + ++ + + + L + LPSGR L Y Sbjct: 495 LYWWDVDNAVKTAVKELIP------TSTHGIQFEVKRGILFITLPSGRKLAYIKPRIGDN 548 Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 G + +Y T T ++ R +YG K ENIVQA+SRDILA M + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLKN--FKIVGHVH 606 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P E + LM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECPI--EQKLDEVASLMGIAPDWLSDINLRADGYECFFYQK 650 >gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 651 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 237/696 (34%), Positives = 330/696 (47%), Gaps = 75/696 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S L G+ +YA E ++LFA+ D V++ D +P + Sbjct: 9 MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +ALE+ V A N+ FER L A + W C++V A G+P L V +AL L Sbjct: 69 DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 ++KM EGK LI F K +RN P H + W F YCK DV V I KR Sbjct: 129 ETEKMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAITKR 188 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ ++E + ++ DQ INDRG +D LA + R + + LT V + Sbjct: 189 LHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELTR--VDN 246 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + +L WL GL ++ L + L L +V R ++S+V K Sbjct: 247 PASVTQLLAWL-RSQGLQIDSLAKADVAAALEGA--LEGDVAEVLALRQEMAKSSVKKYE 303 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TS 349 ++ DGR G LQF+GA RTGRW+G + QNLPR S S E + Sbjct: 304 RMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADML 363 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 T Q++S+ +R+ +A G + +VAD + IEAR +AW+AGEQW L FE G D+Y Sbjct: 364 ETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGGDIY 423 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKT 468 T R F + + R KV LA GYQGG A + M GL+ + A Sbjct: 424 CETGTRMFRQVVEKHSP-LRQRAKVAVLACGYQGGVGALKTMGGEKLGLSEDEMAD---- 478 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + AWR + ++++LW +++ A Sbjct: 479 -------------------------------------IVAAWRAANPKIAQLWWDINAAA 501 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-- 584 I++G A R V + + DK LI+ LPSGR LVY +G NR + T Sbjct: 502 IAVIKDGGA------RAVGRIRLAHDKGALIITLPSGRPLVYPSPRIGENRFGGESITHM 555 Query: 585 -----RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 R+ R TYGGKLTENIVQA +RDILA + ++GY +V+ +HDE+V E P+ Sbjct: 556 GVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTEVPEG 615 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + L LM+ P WA GLPL AEG+ES YRK Sbjct: 616 -RGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650 >gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis] gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 651 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 212/706 (30%), Positives = 331/706 (46%), Gaps = 89/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET IDL K G+ +YAED ++LFA D+ PV ++D + +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 EAL + V A N+ FER L P + W C+++ + GLP +L Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL +KM EG +LI FC K RN P+H W F +Y + DV Sbjct: 122 EGVGTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDV 181 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +RL+ P+ + ++ DQ INDRG +D+ +I + K+ +EL+ Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + + ++ WL E G+ + L + + +L + + T QV R +A Sbjct: 242 ALTR--LENPNSVLQMIGWL-REHGVTTDSLDKKVVKELLKTADETTA---QVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ E + + Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEAREL 355 Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 356 FGTGDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 FE G+D+Y + ++ F V + + R GK+ ELA GY G A + M + GL Sbjct: 416 FEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLK 475 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 LV + WRQ + + Sbjct: 476 DKELRPLVDS-----------------------------------------WRQANPNIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----- 573 W ++ +A + I+ + + + + +K L + LPSGR L Y Sbjct: 495 LFWWDVDRAVKTAIKQ------HIQTETHGIQFEVNKGMLSITLPSGRKLAYVKPKIGEN 548 Query: 574 ---GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 G + +Y T T ++ R +YG K ENIVQA+SRDILA M + ++IV VH Sbjct: 549 QFGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVH 606 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E + + +LM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECGIDQ--SLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650 >gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 653 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 219/701 (31%), Positives = 336/701 (47%), Gaps = 80/701 (11%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET S +D+ G +YAE+ ++LFA+ +DD PV++ D + +P + AL + Sbjct: 3 LSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALTD 62 Query: 64 TDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEALK 117 D+ A N+ FERTVL + + + W CT+V A + GLP +L V + LK Sbjct: 63 NDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTLK 122 Query: 118 L--SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREI 171 L +KM G +LI F CK RN PN E W F YC DV RE+ Sbjct: 123 LGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAPEKWATFKAYCVRDVEAEREV 182 Query: 172 FKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 +RL P+ E+ LW LDQ INDRG +D LA R ++ E +L+ Sbjct: 183 RRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASALSG-- 240 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + E+LK W++ + G LT+ T ++ + K T + +M S+++V Sbjct: 241 LENPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAKSET--VKTMLQLKMLLSKTSVK 298 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 K +V+A SDGR G LQF GA+RTGRW+G + QNLPR + + + + + + Sbjct: 299 KYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAELDDARALLRCGDT 358 Query: 350 ITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + +P ++S +R+ I + G + VAD + IEARV+AW+AGE+W++ F G Sbjct: 359 DALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADGG 418 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFA 463 D+Y + ++ F+V + V R GKV ELALGY GG A ++M + GL Sbjct: 419 DIYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGADKLGLTDAE-- 476 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 E +K++WR+ R+ LW++ Sbjct: 477 ---------------------------------------LEEIKQSWRKASPRIVRLWSD 497 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------G 574 A + + + + + ++ L + LPSGRSL Y Sbjct: 498 FESAALEAVRERSTVSLQ-----HGIKLECRSGILFIRLPSGRSLAYVKPRIEYEESFDR 552 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +Y ++ TYGG+L EN +QA++RD LA M AGY IV+ +HDE+V Sbjct: 553 EGLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMHIHDEVVV 612 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ETP + + + + +M+ WA GL L A+GY + Y+K Sbjct: 613 ETPRSVD-CLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652 >gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 644 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 210/698 (30%), Positives = 315/698 (45%), Gaps = 78/698 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID E+ S DL K G+ +YAE D ++LFA+ D PV + D +P V++ Sbjct: 1 MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL + V A N+ FERT L N I W C++V + GLP +L+ Sbjct: 61 QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTGA 120 Query: 119 SSQKMEEGKELIARFCKGETH---ECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 +K++EGK+LI FCK +RN P+H E W F Y + DV + I + Sbjct: 121 DKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQDK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + P+ +E + LDQ INDRG +D R L L +LT + + Sbjct: 181 ISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRTLTK--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + ++K WL E G+ L + +L S + +V R + ++S+V K Sbjct: 239 PNSVMQMKDWL-AEQGVETGALDKAAVHELLKSAQGD---VAEVLTIRQKLAKSSVKKYT 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + D R RG +QF GA+R+GR++G + QNLP+ + + + Sbjct: 295 AMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEAL 354 Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 D P ++S+ +R+ I E + +VAD + IEARV+AW+AGE W+ + F T +Y Sbjct: 355 DMLYPSVPDLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKIY 414 Query: 410 VTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466 + ++ FNV ++ K R GK+ ELALGY G A + M + G+ Sbjct: 415 EASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMGALDMGVEEEELK--- 471 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +AWRQ + ++ + W + Q Sbjct: 472 --------------------------------------PLVQAWRQANPKIVQFWWAVDQ 493 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRS 578 A ++ ++ R + L++ LPSGR L Y Sbjct: 494 AAQKAVKQ------RTTTSTHGISFTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGREGLC 547 Query: 579 YLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + T++ R TYG KL ENIVQAVSRD+LA M + GY IV+ VHDE+V E Sbjct: 548 FEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHVHDEVVVEA- 606 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 S + LMT P W+ GL LKAEGY Y+K Sbjct: 607 -KQHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643 >gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 655 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 228/707 (32%), Positives = 321/707 (45%), Gaps = 85/707 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TLF D E+ SP L K G+ YAE D ++LF + D PV++ D MP + Sbjct: 1 MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109 AL ++ V AHN+ FER L A + +W CT++ + GLP +L Sbjct: 61 AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPN-HREAWRLFGEYCKGDV 165 AV LKL QK GK+LI +FC T RN P+ W F +Y + DV Sbjct: 121 DAVAAVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I RL P+ E + + LDQ IND G +D L + + R + Sbjct: 181 EVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 LT + + +LK WL G LE L + ++ T +V R Sbjct: 241 KLTG--LDNLNSPIQLKQWLVTR-GCELESLAKAEVD---AALDTATGVVKEVLELRGDL 294 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K + +DGR RG +QF GA RTGR++G + QNLPR + + + Sbjct: 295 AKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARSL 354 Query: 344 THLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + +S +R+ I S G + +VAD + IEARV+AW+AGE L Sbjct: 355 VQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLA 414 Query: 401 AFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGL 457 AF G+DLY T +R F+V + + + R GK+ LA GY G A + M + T GL Sbjct: 415 AFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMGAFTMGL 474 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + AWRQ + + Sbjct: 475 AEHELK-----------------------------------------PIVDAWRQANPHI 493 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGN 575 +LW ++ QA I + + I R R + L + LPSGR L Y +G Sbjct: 494 VQLWADVEQAAIAAISSRQPIRLRNLR------FSVESGILFIELPSGRRLAYVQPRLGE 547 Query: 576 NR-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 NR TT R+ + TYGGKL ENIVQA++RD+L GM KAG+ IV+ V Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRIVMHV 607 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDEIV + P +F + LM++ P+WA+GLPL A+GYE YRK Sbjct: 608 HDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654 >gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725] gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725] Length = 657 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 221/704 (31%), Positives = 325/704 (46%), Gaps = 77/704 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +D+ K G+ KYA +D ++LFA+ D V++ D ++P+V+ Sbjct: 1 MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + ++ A+N+ FE L I +W T+ G + L A G A+ L Sbjct: 61 EALNDKNIIKHAYNAPFEWWCLNQA-GYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119 Query: 119 SSQKMEE--GKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 K ++ GK LI FC K RN P+H E W LF YC DV EI+ Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 KRL P+ +EQELW LDQ IN G +D L I D+ +L +E +T + Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTEEAIQVTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL +TG +E+L + T ++ S + +A++V R +++++ K Sbjct: 238 DNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLED--KEAVRVLEIRQELAKTSIKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + EA+ DGR+RG LQF GA+RTGRW+G + QNLPR + + I Sbjct: 296 YVAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREIVKSQDAD 355 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +S +R+ + SEG K VVAD + IEARV+AW+AGEQW+ + F T Sbjct: 356 FLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQEVFATHGK 415 Query: 408 LYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ F V + K R GKV ELALGY G + A M + GL Sbjct: 416 IYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMGALDMGLEEKE 475 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 V + WR + R+++LW Sbjct: 476 LPD-----------------------------------------VVRRWRNANKRITDLW 494 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---- 577 + A + +E G+ + + + D++ L + LPSGR L Y Sbjct: 495 YGIENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPHLKENRFG 554 Query: 578 ------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 +N TT++ + TYGGKL ENIVQA+SRD LA + G V+ +HDE Sbjct: 555 SNALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQTVMHIHDE 614 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V + + + + LM WA GL LKA G+ES Y K Sbjct: 615 AVIDAD--PNVDLNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656 >gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 650 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 210/719 (29%), Positives = 315/719 (43%), Gaps = 114/719 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L ID ETRS +D+ K G+ +YAE D ++LF + D V++ D + +PQ + Sbjct: 1 MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98 +AL + V A N+ FER L + + H W CT+V Sbjct: 61 DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE---AWR 155 + GLP +L VG L L QKM EGK LI F P H W Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQKMNEGKALIRYFSTP-----------PFHEPTGAKWD 169 Query: 156 LFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 LF Y + DV V I KRL P+ E + LDQ INDRG +D+ L QI Sbjct: 170 LFKSYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVR 229 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 + KL L++LT + + + ++K WL E G+ E L + + +L++ Sbjct: 230 TKEKLTDRLKTLT--SLENPNSVTQMKAWL-KEQGVETESLDKKSVTALLANVPDP---L 283 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V R + ++S+V K + + SDGR RG QF GA+RTGR+SG QNLP+ Sbjct: 284 KEVLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNH 343 Query: 334 RSHEELDQ------IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 + E + L S PD ++S +R+ I+ EG+K +VAD + IEAR Sbjct: 344 LADLEYARSLVRQGSFAALELLYESVPD---VLSQLIRTAFISKEGRKFIVADFSAIEAR 400 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGA 445 VL+W+A E+W++ F D+Y T R F+ + R GK+ EL+ GY G Sbjct: 401 VLSWLAKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSV 460 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 A + + +E Sbjct: 461 GALKAFGA----------------------------------------LESGMKEEELNP 480 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + AWR + + + W + +A + I+ R + + + + + LP G Sbjct: 481 LVDAWRAANPNIVDFWWAVDRATKDCIKE------RSTKVTHGIRFIYQGSMMFIELPCG 534 Query: 566 RSLVYRDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R L Y G + +Y+ +++ R +YG KL EN+ QA+SRDIL M Sbjct: 535 RRLAYVKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQT 594 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DIV VHDE++ E + + S + M P WA GLPL+A+G+E + Y+K Sbjct: 595 L--RTMDIVAHVHDELIIECDE--RVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649 >gi|332522757|ref|ZP_08399009.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] gi|332314021|gb|EGJ27006.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] Length = 653 Score = 661 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 209/707 (29%), Positives = 322/707 (45%), Gaps = 89/707 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDC-VHDPVMPQVL 57 + L ID ET IDL K G+ +YAED ++LFA D+ PV ++D + +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDESFELLLFAVSVDNGPVTVYDLDLTKEKLPQDI 62 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSA 108 E L + V A N+ FER L P W C+++ + GLP + Sbjct: 63 LETLVDNSVIKWAFNASFERICLSNWLKKYHPDLLLDGFLSPVSWRCSMIWSAYLGLPLS 122 Query: 109 LKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHRE-AWRLFGEYCKGD 164 L+ VG LKL QKM EG +LI FC K RN P+H W F +Y + D Sbjct: 123 LEGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHASNKWSTFIDYNRRD 182 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I +R++ P+ S ++ DQ IND G +DV +I + K+ EL Sbjct: 183 VEVELAIKERVKNFPVPSFVWNEYHQDQIINDHGIGIDVDFVKAALKIDGESKAKIQAEL 242 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 ++LT + + + ++ +WL E G+ + L + + +L + + T QV R + Sbjct: 243 KALTG--LENPNSVLQMISWL-REHGVATDSLDKNAVKELLKTVDETTA---QVLKLRQQ 296 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ + + Sbjct: 297 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 356 Query: 343 ITHLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + +++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 357 LFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 416 Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGL 457 FE G+D+Y + ++ F V + + R GK+ ELA GY G A + M + GL Sbjct: 417 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGL 476 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + LV + WR + + Sbjct: 477 SKEELQPLVNS-----------------------------------------WRLANPNI 495 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---- 573 W ++ A + ++ + + L + LPSGR L Y Sbjct: 496 VLYWWDVDNAVKTAVKELIP------TSTHGIQFEVKSGILFITLPSGRKLAYIKPRIGD 549 Query: 574 ----GNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 G + +Y + T ++ R +YG K ENIVQA+SRDILA M + IV V Sbjct: 550 NQFGGESVTYEGSGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLKD--FRIVGHV 607 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDEI+ E + N + LM P W + L+A+GYE Y+K Sbjct: 608 HDEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECFFYQK 652 >gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 230/708 (32%), Positives = 316/708 (44%), Gaps = 89/708 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LF+D ET SP++LTK G+ YAE D V+LF + D +PV++ D +P + Sbjct: 1 MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108 EAL + VT A N+ FER L A P +W CT+V + GLP + Sbjct: 61 EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKP-NHREAWRLFGEYCKGD 164 L+ V L L +K GK+LI RFC RN P + + W F Y + D Sbjct: 121 LEQVATVLDLPVRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNRRD 180 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I RL P+ E + LDQ IND G +D L Q R Sbjct: 181 VEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLARA 240 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT + + +LK WL G L+ LT+ V ++ T + +V R Sbjct: 241 QELTG--LENPNSPIQLKDWLTA-HGTPLQSLTKD---EVAAALDTATGEVREVLQLRGE 294 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++S+V K T+ DGR RG LQF GA RTGR++G + QNLPR + Sbjct: 295 LAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEARD 354 Query: 343 ITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + +S +R+ + ++G + VVAD + IEARV+AW+AGE L Sbjct: 355 LVRTGEFEAVELLYDSVPDTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATTL 414 Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456 +AF G+DLY T +R F V + + R GK+ LA GYQGG A + M + G Sbjct: 415 QAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMG 474 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + LV WR + Sbjct: 475 LAESELQPLVDA-----------------------------------------WRAANPN 493 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574 V +LW +++ A + I R+ V + + + + LPSGR L Y +G Sbjct: 494 VVQLWADINAAAIEAIST------RQPTGVGALTFTVESGIMFVRLPSGRRLAYVKPKLG 547 Query: 575 NNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 NR T R+ + TYGGKLTENIVQAV+RD+L GM +AGY IV+ Sbjct: 548 ENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRIVMH 607 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDEIV ET + LM + P WA GLPL A+GY Y K Sbjct: 608 VHDEIVVETATA---TVDEICELMATAPDWAAGLPLAADGYACDFYMK 652 >gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] Length = 653 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 223/708 (31%), Positives = 315/708 (44%), Gaps = 89/708 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LFID ET SP++L G+ YA+ ++LF + D PVE+ D + +P+ + Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108 AL + V A N+ FER L + P +W CT+V + GLP + Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKP-NHREAWRLFGEYCKGD 164 L V L L +K GK+LI +FC T RN P + + W F Y + D Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I RL PL + E + + LDQ +ND G +D L R Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT + + +LK WL G L+ LT+ V ++ T Q +V R Sbjct: 241 QELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKD---EVAAALDTATGQVREVLLLRGE 294 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++S+V K + DGR RG LQF GA RTGR++G + QNLPR + Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354 Query: 343 ITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + +S +R+ I ++G + VVAD + IEARV+AW+AGE L Sbjct: 355 LVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGETTTL 414 Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456 +AF G+DLY T +R F V + + R GK+ LA GYQGG A + M + G Sbjct: 415 EAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMG 474 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + LV WR + Sbjct: 475 LAESELQPLVDA-----------------------------------------WRAANPS 493 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574 V +LW +++ A +TI R+ V + + + + LPSGR L Y +G Sbjct: 494 VVQLWADINAAAIETIST------RQPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547 Query: 575 NNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 NR + T R+ + TYGGKLTENIVQAV+RD+L M +AG+ IV+ Sbjct: 548 ENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGHRIVMH 607 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDEIV ET + LM++ P WA GLPL+A+GY Y K Sbjct: 608 VHDEIVVETATA---TVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652 >gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] Length = 662 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 224/709 (31%), Positives = 326/709 (45%), Gaps = 90/709 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL CG+ +Y E D V+LFA+ +DD PV++ D +P + Sbjct: 9 MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L + +V A N+ FERT +K F + +W CT V A + GLP L+ V E LKL Sbjct: 69 HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFK 173 +QK GK LI F CK RN P H E W + Y DV V RE+ + Sbjct: 129 EAQKDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREVRR 188 Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +LE P+ E +LW LDQ INDRG +D L + D +T L QE + +T + Sbjct: 189 KLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDITQ--LE 246 Query: 232 SSRCLEKLKTWLFLETGLHLED-LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + L KLK WL E GL D L + +L + +V R +++V K Sbjct: 247 NPNSLTKLKEWL-AEQGLETPDGLGKEHMPTLL--VQAPDEDTRRVLQIRQELGKTSVDK 303 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 N + ++ +DGR RG LQF GA+RTGRW+G + QNLP+ + + + + Sbjct: 304 YNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREV-----LK 358 Query: 351 TSDPDPLQ--------IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + D D L+ ++S +R+ I S G + +V+D + IEAR++AW+A E W L F Sbjct: 359 SGDFDLLEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVF 418 Query: 403 ETGEDLYVTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + +Y ++ F V + K + RA GKV LA GYQGG A KM Sbjct: 419 QDHGKIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMG----- 473 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A++ + K WR+ + R+ Sbjct: 474 -----------------------------------ALKSGIPEEELPGIVKRWRKANPRI 498 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---- 573 +LW +A + + + V + L LPSGRSL Y + Sbjct: 499 VKLWYAAEEAALTAVREKRTVPL-----AHGVKYRYKSGTLFADLPSGRSLAYVNPRIKP 553 Query: 574 -------GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 G ++ ++ TYGG+L EN+VQA++RD LAE +M A Y V+ Sbjct: 554 DPNFGKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEYRTVM 613 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE+V + P + + +M+ WA GLPL A G+E + Y+K Sbjct: 614 HVHDEVVLDVPIGT-GSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661 >gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 228/711 (32%), Positives = 313/711 (44%), Gaps = 95/711 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M LFID ET SP++L G+ YA+ ++LF + D PVE+ D + +P+ + Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP----------IHRWICTLVLARSNGLPSA 108 AL + V A N+ FER L + P +W CT+V + GLP + Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKP-NHREAWRLFGEYCKGD 164 L V L L +K GK+LI +FC T RN P + + W F Y + D Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180 Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I RL PL + E + + LDQ +ND G +D L R Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + LT + + +LK WL G L+ LT+ V ++ T Q +V R Sbjct: 241 QELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKD---EVAAALDTATGQVREVLLLRGE 294 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++S+V K + DGR RG LQF GA RTGR++G + QNLPR + Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354 Query: 343 ITHLPT------SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + S PD L S +R+ I ++G + VVAD + IEARV+AW+AGE Sbjct: 355 LVRTGNYDAVELLYDSVPDTL---SQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEA 411 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS- 453 L+AF G+DLY T +R F V + + R GK+ LA GYQGG A + M + Sbjct: 412 TTLEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGAL 471 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 GL + LV WR Sbjct: 472 RMGLAESELQPLVDA-----------------------------------------WRAA 490 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--R 571 + V +LW +++ A + I R V + + + + LPSGR L Y Sbjct: 491 NPNVVQLWADINAAAIEAIST------RLPTSVGALTFTVESGIMFIRLPSGRRLAYVKP 544 Query: 572 DVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 +G NR TT R+ + TYGGKLTENIVQAV+RD+L GM +AG+ I Sbjct: 545 KLGENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRI 604 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 V+ VHDEIV ET + LM P WA GLPL A+GY Y K Sbjct: 605 VMHVHDEIVVETATA---TVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652 >gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes L99] Length = 644 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 219/693 (31%), Positives = 324/693 (46%), Gaps = 72/693 (10%) Query: 2 ATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 L ID ET S D+ CG Y +ED ++LFA+ +DD PV++ D D +P + E Sbjct: 4 KVLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLTIDE-IPDTVLE 62 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L N V AHN+ FERT L +N +P +W CT+V GLP++L + +AL+L+ Sbjct: 63 DLNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLA 122 Query: 120 SQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRL 175 +K EGK LI FC K RN P H E W F EYC+ DV V R I K++ Sbjct: 123 QEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAKKI 182 Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P EQ W LDQ I D+G +DV L + + L ++ + LT + + Sbjct: 183 AKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTG--LENP 240 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 +++LK WL G + L + + +L+ + L ++ R S++++ K Sbjct: 241 NSVQQLKDWLAD-MGYPVSSLNKDSVSELLAD-EDLDEDVREMLLLRQEMSKTSIKKYEK 298 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + A DGR+RG LQF GA+RTGRW+G + QNLPR + + Sbjct: 299 MQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFE 358 Query: 354 ---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + ++S +R+ IA +G + D + IEARV+AW+AGEQW+L F + +Y Sbjct: 359 MMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYE 418 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTN 469 + ++ F++ +V K+ R GKV ELALGY GG A M + GL N Sbjct: 419 ASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMGALEMGLKENELQ------ 472 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + AWR+ ++ LW + + + Sbjct: 473 -----------------------------------GIVDAWRKASPAITSLWRGVEKHAK 497 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYLNT 582 I RK + + + L + LPSGR+L Y G Y Sbjct: 498 LAIST------RKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICYEGV 551 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 T + ++YTYGGKL ENIVQA++RD LA + G D V+ VHDE + E ++ E Sbjct: 552 TDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQES-ES 610 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + L ++ SWA GLPL+ +G+ S Y K Sbjct: 611 SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643 >gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 641 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 202/708 (28%), Positives = 312/708 (44%), Gaps = 101/708 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L +D ETRS +D+ + G+ +Y AED ++LF + D V++ D V +PQ + Sbjct: 1 MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFN-----------LDIPIHRWICTLVLARSNGLPS 107 +AL + V A N+ FER L + + W CT+V + GLP Sbjct: 61 DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR---EAWRLFGEYCKGD 164 +L V L L QKM EGK LI F P H E W LF Y + D Sbjct: 121 SLAVVARVLGLEEQKMTEGKALIRYFSTP-----------PFHEPTGEKWELFKSYNRRD 169 Query: 165 VTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 V V I +RL P+ E + LDQ INDRG C+D+ +I + K+ L Sbjct: 170 VEVEMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRL 229 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 ++LT + + + ++K WL E G+ E L + T +L++ L +V R + Sbjct: 230 KTLTG--LENPNSVAQMKAWL-KEQGVETESLDKKTVAALLTNVSAL---LKEVLELRQQ 283 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++S+V K + + +D R RG QF GA+RTGR+SG QNLP+ ++ E + Sbjct: 284 LAKSSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARS 343 Query: 343 ITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + + ++S +R+ I EG+K +VAD + IEARVL+W+A E+W++ Sbjct: 344 LVRQGNFAALELLYESVSDVLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRM 403 Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTG 456 F D+Y T R F+ + R GK ELA GY G A + + +G Sbjct: 404 DVFANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFGALESG 463 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + LV WR + Sbjct: 464 MKEDELKPLVDA-----------------------------------------WRTANPN 482 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573 + + W + +A + I+ R + + + LPSGR L Y Sbjct: 483 IVDFWWAVDRAAKDCIKE------RSITGTHGIKFIYQSGMMFIELPSGRRLAYVKPRIG 536 Query: 574 -----GNNRSYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 G + +Y+ +++ R +YG KL ENI QA+SRD+L M DIV Sbjct: 537 ENQFGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQTL--RSMDIVAH 594 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ E + +++ M P WA+GL L+A+G+E + Y+K Sbjct: 595 VHDELIIECDERVSLSSA--CEQMARTPLWAEGLLLRADGFECQFYQK 640 >gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes] gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes] gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 651 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 213/706 (30%), Positives = 324/706 (45%), Gaps = 89/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET IDL K G+ +YAED ++L A D+ PV ++D + +PQ + Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYD-FNKEKLPQDIL 61 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 EAL V A N+ FER L P W C+++ + GLP +L Sbjct: 62 EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165 + VG LKL QKM EG +LI FC K RN P+H W F +Y + DV Sbjct: 122 EGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDV 181 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I +R++ P+ S ++ DQ INDRG +DV +I + K+ EL+ Sbjct: 182 EVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAELK 241 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + ++ +WL E G+ + L + + +L + + T QV R +A Sbjct: 242 TLTG--LEKPNSVLQMISWL-REHGVATDSLDKKAVKELLKTVDETTA---QVLKLRQQA 295 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K ++ + DGR RG QF GA+RTGRW+G + QNLP+ + + + Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEAREL 355 Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++ D +S +R+ + S+GKK +V D + IEARVL+ +AGE+W+ K Sbjct: 356 FRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415 Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 FE G+D+Y + ++ F V + + R GK+ ELA GY G A + M + GL+ Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLS 475 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 LV + WRQ + + Sbjct: 476 EEELQPLVNS-----------------------------------------WRQANPNIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 W ++ A + ++ + + L + LPSGR L Y +G N Sbjct: 495 LYWWDVDNAVKTAVKELLP------TSTQNIQFEVKSGILFITLPSGRKLAYIKPRIGEN 548 Query: 577 R------SYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 + +Y T T ++ R +YG K ENIVQA+SRDILA M + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLND--FKIVGHVH 606 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P E + LM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECPI--EQKLDEVASLMGIAPYWLSDINLRADGYECFFYQK 650 >gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] Length = 655 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 227/706 (32%), Positives = 323/706 (45%), Gaps = 83/706 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TLF D E+ S L K G+ YAE D ++LF + D P+E+ D + +P + Sbjct: 1 MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 AL + V AHN+ FER L A P +W CT++ + GLP +L Sbjct: 61 AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPN-HREAWRLFGEYCKGDV 165 AV LKL QK GK+LI +FC T RN P+ W F +Y + DV Sbjct: 121 DAVATVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180 Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V I RL P+ E + + LDQ IND G +D L + + R + Sbjct: 181 EVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLARAQ 240 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 +LT + + +LK WL G L+ L + ++ T +V R Sbjct: 241 TLTG--LENPNSPIQLKQWLASR-GCVLDSLAKAEVD---AALDTATGTVKEVLGLRGDL 294 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++S+V K + SDGR RG +QF GA RTGR++G + QNLPR + + + Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTL 354 Query: 344 THLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + +S +R+ I S G + +VAD + IEARV+AW+AGE L+ Sbjct: 355 VRTGNLEALELLHESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLQ 414 Query: 401 AFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+DLY T +R F V + V + R GK+ LA G+ G A ++M + T Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMGALT--- 471 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 EH ++ + AWR + + Sbjct: 472 ----------------------------MGLAEHELK---------PIVDAWRAANPHIV 494 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 LW + +A I + ++I R R + L + LPSGR L Y +G N Sbjct: 495 ALWAGVEEAAIAAIASRQSIRLRNLR------FSVEAGILFIELPSGRRLAYVKPRLGEN 548 Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R TT R+ + TYGGKLTENIVQA++RD+L GM KAG+ IV+ VH Sbjct: 549 RWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQIVMHVH 608 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DEIV + P+ F A+ LM++ P+WA+GLPL A+GYE YRK Sbjct: 609 DEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] Length = 653 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 230/700 (32%), Positives = 332/700 (47%), Gaps = 73/700 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S ID+ K G KYA+ D +++FA+ +D PV++ D +PQ + Sbjct: 1 MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL + V A+N+ FE L F PI +W CT V G + L AVGEAL + Sbjct: 61 EALADPAVVKHAYNAAFEWYCLNRFFY--SPIEQWRCTQVHGLYCGYTAGLGAVGEALGI 118 Query: 119 SSQK--MEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 K + G LI FC K + R P+H E W+LF EYC GDV EI Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ +E +LW+LDQ IN RG D+ + + + ++L E SLT + Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + +++L WL ETG +E+L + T +++ + +A +V R S+++ K Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLDE--GKARRVLEIRQELSKTSTKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 + A SD R+RG LQF GA+RTGRW+G + QNLPR S E + + + Sbjct: 295 YAAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVE 354 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +S +R+ + GK+L VAD + IEARV+AW+AGEQW+L F T Sbjct: 355 MLKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFATHGK 414 Query: 408 LYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + ++ F V Q+ K D R GKV ELALGYQGG A M Sbjct: 415 IYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMG------------- 461 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A++ + WR + R+ +LW + Sbjct: 462 ---------------------------ALDQGLTEAELPEIVTRWRNANRRIVDLWYSME 494 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--GNNRS----- 578 A + +E G+ + R + ++ + LPSGR L Y N Sbjct: 495 AAAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGKPAL 554 Query: 579 ---YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 ++ T+++ T TYGGKL EN VQA++RD LA +M GY IVL VHDE+ E Sbjct: 555 HYWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEVGAE 614 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE + +M WA GLPLK +G+ + Y K Sbjct: 615 LSSADEL--DRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652 >gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703] Length = 699 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 258/704 (36%), Positives = 377/704 (53%), Gaps = 38/704 (5%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+ D ET + K G YAE V V++ + +D PV WD MP+ LK L Sbjct: 3 KKLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFN--LDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 ++ + I A NS+F+RT+++ + I RW T+V A ++GLP L + E L ++ Sbjct: 62 QDPSIEIYAQNSHFDRTMMRHDMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEILGIT 121 Query: 120 SQK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K +EGK LI FCK R H E W+ F +Y D+ R I K+L Sbjct: 122 QDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKLP 181 Query: 177 PLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + KE LW+ DQ INDRG +D LA V E+ L + ++LT V ++ Sbjct: 182 VWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAAT 241 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + L + G+ L D+ ++T +R ++ +L ++ R++AS ++ K TL Sbjct: 242 QRDALLRHIVESFGVDLPDMQKSTLERRIAD-PELPSVLRELLAIRLQASTTSTSKYKTL 300 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352 ++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP E +D I L Sbjct: 301 LKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLL 360 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--------- 403 + +++IS +R C++A +GKKLVV+DL+ IE RVLAW+AGE+WKL+AF Sbjct: 361 FDNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYD 420 Query: 404 -------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 G DLY YAR+FN++P VTK QR IGKVMEL LG+ GG AF A G Sbjct: 421 EGGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYG 480 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+L+ A+ N +A+++ + + + + + AC+ +K+ WR H Sbjct: 481 LDLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSE-QVFIACDSLKRMWRNAHPE 539 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573 W+E+ + I N K ++ + +++D + L + LPSGRS+ Y + Sbjct: 540 TVSFWSEIENTVRRAIINPKQTFVCRK-----LKIRRDGSWLRIQLPSGRSVCYPGIRIE 594 Query: 574 GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 G+ SY+ NT +R+ R TYGGKL EN QA +RD++A M GY+I LTVHDE Sbjct: 595 GDKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDE 654 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ E PDTD F + L L+ +NP WA LPL A G+E+ YRK Sbjct: 655 VLTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698 >gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] Length = 646 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 219/697 (31%), Positives = 333/697 (47%), Gaps = 78/697 (11%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S +D+TK G+ Y AED ++LFA+ ++D + + D +PQ + E L Sbjct: 2 LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 N + A N+ FERT L N +P +W C+ V A + G +L+ ++L L Q Sbjct: 62 TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE--PL 178 KM+EGK LI F RN P H E W++F YCK DV V R + K+LE P+ Sbjct: 122 KMKEGKALIRYFSMPCKR-GERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYPV 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + KE ELW LDQ IND G +D L H+ + ++K +E +LT + + + Sbjct: 181 TKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALTG--LENPNSQVQ 238 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LK WL G+ E L++ + +L + + +V R S+++V K + A+ Sbjct: 239 LKGWL-ETKGVKAESLSKEKVRELLKEVED--EKVKRVLKLRQELSKTSVKKYEAIKRAV 295 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TSITSDPD 355 D R+RG L+F GA+RTGRWSG + QNLPR + + E +++ Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +++S +R+ I + + +V+D + IEARV+AW+AGE+W + F+ +Y +R Sbjct: 356 VPEVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAASR 415 Query: 416 SFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTN 469 F V ++ K R GKV LA GYQG A M + GL + Sbjct: 416 MFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVKMGLKEEELS------ 469 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + AWR+ +S + +LW ++ A Sbjct: 470 -----------------------------------GIVAAWRKSNSNIVKLWRKIEDAAI 494 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS----------- 578 + + K + + + + L + LPSGRSL Y + Sbjct: 495 KAVREKKVV-----KMQYGLEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKLKLTYE 549 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + T+ R TYGGKLTENIVQA++RD LA M+ +AGY IV VHDE++ + P+ Sbjct: 550 GIEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVILDVPN 609 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M WAKGLPLKA+G+E+ Y+K Sbjct: 610 G-FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645 >gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 655 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 220/697 (31%), Positives = 328/697 (47%), Gaps = 77/697 (11%) Query: 4 LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S +DL + G+ YAE ++L A+ FDD V + D V D +P + +AL Sbjct: 10 LSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLKAL 69 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + + A+N+ FERT L A N +P +W C+ V A + GLP L V L L Q Sbjct: 70 IDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLGDQ 129 Query: 122 KMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE- 176 K GK LI F CK RN P H E W + YC+ DV V R + KRL Sbjct: 130 KDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRLAS 189 Query: 177 -PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 P+ KEQ LW LDQ +ND G +D L Q+ E+ L +E + +T + + Sbjct: 190 NPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITG--LENPNS 247 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + +L+ WL G+ L + +L + L +V R S+++V K + Sbjct: 248 VAQLRDWLTSR-GIETSGLAKKQVSDLLQT--DLPGDVRRVLILRQMMSKTSVKKYEAMD 304 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---SITS 352 ++ DG +RG LQF GA+RTGRW+G + NLP+ + + + T Sbjct: 305 RSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGDLDEARQLVKTGNYELITTL 364 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 ++S R+ I +G + VV+D + IEARV+AW+AGE+W++K FE +Y + Sbjct: 365 YGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKIYEAS 424 Query: 413 YARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTN 469 ++ F V ++TK R GK+ ELALGY G A +M + GL+ + LVK Sbjct: 425 ASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMGALEMGLSEDELPALVKA- 483 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 WR+ + + LW +L ++ Sbjct: 484 ----------------------------------------WRKANPNIVNLWYDLEKSAF 503 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG-------NNRSYL 580 + ++ K + A+ + L LPSGRSL Y +G +Y Sbjct: 504 EAVKWQKVVTAK-----SGIQFYGGSGLLRARLPSGRSLSYVRPQIGIDERFGREEITYE 558 Query: 581 N--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 ++Q R TYGGK+ EN+VQA++RD LAE M+ AGY I VHDE+V E P+ Sbjct: 559 GVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDEVVIEVPN 618 Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + A + +M+ WA GLP+ A+ +E+ Y+K Sbjct: 619 EQDAKAD-IERIMSEPIDWAPGLPMNADSFETGYYKK 654 >gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] Length = 653 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 231/706 (32%), Positives = 333/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L + T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKES---TGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] Length = 653 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 232/706 (32%), Positives = 334/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A] gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A] Length = 653 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 227/706 (32%), Positives = 329/706 (46%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D PV D P Sbjct: 1 MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + +V A N+ FER L FN ++P W CT+V GLP++L VG Sbjct: 61 YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTR 169 E L L +QK + GK LI F CK RN P H + W+ F +YC DV V Sbjct: 121 EVLNLQNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ +EQ+ W LDQ INDRG + +L N++ + + +L ++ +T Sbjct: 181 SIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K T +A Q+ R++ S+++ Sbjct: 241 --LENPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYL---KYATGKAKQMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M D R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCGDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELNIARDFIK 354 Query: 348 ------TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + D P ++S VR+ A EG L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + A+ F V + K R GKV ELALGYQGG A + M + G++ Sbjct: 415 FNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMGALDMGID 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + LV + WR+ + + Sbjct: 475 ESELQGLVDS-----------------------------------------WRKANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 W A +T+ + + R K L++ LPSGRSL Y + Sbjct: 494 AFWKGCQDAAIETVRTRQTHLTHGLR------FYMKKGFLMIELPSGRSLAYPKARVGEN 547 Query: 579 YLNTT---------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 + R+ T+ TYGGKL ENIVQA +RD+LA M AG+ IV VH Sbjct: 548 SWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E PD + ++M+ WA+GL L ++G+ S Y K Sbjct: 608 DEVIVEIPDG-SGGLKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652 >gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] Length = 653 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 231/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKV---ATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30] gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30] Length = 653 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 231/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D P+ D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKV---ATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 577 ------RSYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 649 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 225/708 (31%), Positives = 324/708 (45%), Gaps = 93/708 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M +L +D ET SP +L G+ +YAED ++LF + D P ++ D +P + Sbjct: 1 MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109 +AL + VT A N+ FER + A P W CT+V A S GLP +L Sbjct: 61 QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVT 168 +AL+L +K G++LI RF R P + W+ + Y + DV V Sbjct: 121 DGAAKALRLPIEKDPAGQKLIRRFSIPGKDGI---RVLPSDDPVGWQQYISYNRRDVDVE 177 Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++ RL P+ E E ++LDQ IND G +D LA ++ R + LT Sbjct: 178 VQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQLT 237 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +LK WL G LE LT+T + L + +T +V R SRS Sbjct: 238 G--LENPNSPIQLKDWL-AAHGCELESLTKTEVEAALET---VTGDVAEVLRLRQDLSRS 291 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII--- 343 +V K ++ SD R RG +Q++GA RTGR++G + QNLPR + + Sbjct: 292 SVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNA 351 Query: 344 ---THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 L + PD L S +R+ I S+ + +VAD + IEARVLAW+AGE+ L+ Sbjct: 352 GNSDALELLYSPLPDTL---SQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGTLQ 408 Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGL 457 AF G+DLY T +R F V + + R GK+ LA GY G A + M + GL Sbjct: 409 AFREGKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMGALRMGL 468 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + LV WR + V Sbjct: 469 DESELKPLVDA-----------------------------------------WRDANPMV 487 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--GN 575 + W+++ QA T+E R V +++ L + LPS R L Y G Sbjct: 488 VQFWHDIEQAAITTVET------RTPTQVGRIHLSYRSGCLFIALPSRRELCYPRPRLGE 541 Query: 576 NRSYL--------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 NR + + TTR+ TYGGKLTEN+VQA +RD+L M + AG+ IV+ Sbjct: 542 NRFGMTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIVMH 601 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +HDEIV + P TD + + LMT P+WA GLPL A+GYE Y K Sbjct: 602 IHDEIVVDEP-TDGASVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648 >gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47] gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47] gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH60] gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 653 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 232/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L SQK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 132] Length = 653 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 230/706 (32%), Positives = 331/706 (46%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG+ KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKV---ATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 653 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 231/706 (32%), Positives = 333/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3] gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3] Length = 653 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 230/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYIKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01] Length = 653 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 231/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK V K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] Length = 653 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 231/706 (32%), Positives = 334/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYL---KRATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M +D R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCNDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P D + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPK-DSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719] gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719] gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] Length = 653 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 230/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] Length = 653 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 230/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224] gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224] Length = 653 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT++ + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] Length = 653 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WA+GL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652 >gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A] gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A] Length = 650 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 230/703 (32%), Positives = 330/703 (46%), Gaps = 85/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 + ID ET S D++KCG+ KY AED +++ A+ D P+ D P + Sbjct: 1 MNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYET 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 +L +QK + GK LI F CK RN P H E W+ F +YC DV V I Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T + Sbjct: 181 NKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E GL + +L + T Q L T +A ++ R++ S+++V K Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKV---ATGKAKKMLEIRLQMSKTSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354 Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV + WR + + W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577 +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547 Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEV 607 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E P + +M WAKGL L ++G+ S Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916] gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916] Length = 653 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 223/706 (31%), Positives = 330/706 (46%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET +D+ G KY E ++L A+ +DD PV++ D ++ +P+VL+ Sbjct: 1 MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60 Query: 59 EALEN--TDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + + V A N+ FER +KA F L W CT+V A + GLPS+L VG+A Sbjct: 61 FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120 Query: 116 LKL--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 LK QKM+EGK LI FCK RN P H E W F EYCK DV V R Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180 Query: 170 EIFKRLEPLSS--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 EI L + KE+ELW LDQ INDRG VD+ L + + + +L +E +LT Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLTG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ +LK W+ G + LT+ + ++ +K ++ R ++++ Sbjct: 241 --LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKN--VKKILELRQLMAKTS 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + K T++ A D R+RG LQF GA+RTGRW+G + QNLP+ E + + Sbjct: 297 IKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNG 356 Query: 348 T------SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 S PD L S +R+ I ++G + +VAD + IEARV+A++A EQW+L Sbjct: 357 DFETIEFLFDSIPDTL---SQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDV 413 Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 F+ G D+Y + ++ F V + + RA GK+ ELALGY G A + T + Sbjct: 414 FKEGGDIYCASASKMFKVPVEKHGINGHLRAKGKIAELALGYGGAGGAIRAFDKTGSIPD 473 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ WR+ +++ Sbjct: 474 ED-----------------------------------------LPKLVSDWRKASPHITQ 492 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR-- 577 W + +A ++ I + + D L + LPSGR L Y Sbjct: 493 FWWNVDKAAKKAITEKTTVALH-----HGIKFIYDPGVLFIQLPSGRKLSYLRPKIEEGK 547 Query: 578 --------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 + T++Q R TYG KL ENIVQA +RD LAE M K G+ +V+ VH Sbjct: 548 FGSDVITYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE+V + + + + + + WA GLPLKA+GYE Y K Sbjct: 608 DELVLDVSK-EIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652 >gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] Length = 653 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 232/705 (32%), Positives = 328/705 (46%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D +P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + +V +A N+ FER L + + +W CT+V A GLP++L + L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + QK G +LI F CK + RN P H E W+ F EYC DV V I Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ E +L+ LDQ INDRG +D LA I+ E+++LT + Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + L +LK WL E G E L + + L+ L +V R+ S S+ K Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SD R+ G LQF GA+RTGRW+G + QNLPR S + + + Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + + +R+ ++A EG + +V+D + IEARV+AW A + W L F T Sbjct: 356 GIELMYENVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLDVFRTHGK 415 Query: 408 LYVTTYARSFNVAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +Y T A+ F++ +VT KD R GKV LALGYQGG A + M Sbjct: 416 IYEATAAQMFHL--GEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------ 467 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A+E+ + + WR + R+ Sbjct: 468 ----------------------------------ALENGIEEHELQDIVDRWRTANKRIK 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571 W+E +A ++NG + + K L + LPSGR L Y Sbjct: 494 NFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKEG 548 Query: 572 DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 D G Y + T + TYGGKL ENIVQA +RD+LAE M+ KAGY IV VHD Sbjct: 549 DYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E V E P+ ++ + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 609 EAVAEVPEGEK-SIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652 >gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] Length = 653 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 230/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] Length = 653 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AE+ +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188] gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188] gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] Length = 653 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 233/705 (33%), Positives = 328/705 (46%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D +P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + +V +A N+ FER L + + +W CT+V A GLP++L + L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + QK G +LI F CK + RN P H E W+ F EYC DV V I Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ E +L+ LDQ INDRG +D LA I+ E++ LT + Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + L +LK WL E G E L + + L+ L +V R+ S S+ K Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SD R+ G LQF GA+RTGRW+G + QNLPR S + + + Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + D + +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415 Query: 408 LYVTTYARSFNVAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +Y T A+ F++ +VT KD R GKV LALGYQGG A + M Sbjct: 416 IYEATAAQMFHL--GEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------ 467 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A+E+ + + WR + R+ Sbjct: 468 ----------------------------------ALENGIEEHELQDIVDRWRTANKRIK 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571 W+E +A ++NG + + K L + LPSGR L Y Sbjct: 494 NFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLEQG 548 Query: 572 DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 D G Y + T + TYGGKL ENIVQA +RD+LAE M+ KAGY IV VHD Sbjct: 549 DYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E V E P+ ++ + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 609 EAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] Length = 693 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 249/696 (35%), Positives = 379/696 (54%), Gaps = 32/696 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L++D ET S + G YA + ++L A+ DD PV + + +P L AL + Sbjct: 5 LWLDLETYSETPIRN-GTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALRD 63 Query: 64 TDVTIVAHNSYFERTVLKACF-NLDIP------IHRWICTLVLARSNGLPSALKAVGEAL 116 + + AHNS F+RTVL+ + P + RW T+V A ++GLP +L + + L Sbjct: 64 GETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDIL 123 Query: 117 KLSSQKMEE--GKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFK 173 ++ K ++ GK LI FCK R K H E W+ F +Y D+ REI K Sbjct: 124 GVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREIDK 183 Query: 174 RLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +L + + E LW+ DQ INDRG +D LA V++E+ +L + LT V Sbjct: 184 KLPVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEVQ 243 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++ + L + G+ L D+ +T QR +S L + ++ R++AS ++ K Sbjct: 244 AATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSD-PDLPIELRELLAIRLQASTTSTSKY 302 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 TL++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP E +D I L Sbjct: 303 KTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGCA 362 Query: 352 S--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----T 404 + +++IS +R C++A EGKKLVV+DL+ IE R L W++GE+WKL+AF T Sbjct: 363 DLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAGT 422 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G DLY+ YAR+FN++P V K QR IGKVMEL LG+ GG AF A GL+L+ A Sbjct: 423 GHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLAK 482 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 N +A+++ + + + + + + AC+ +K+ WR H + W E+ Sbjct: 483 AALPNVPASIQREAQSWYKASVKQKRTYGLSE-QVFIACDSLKRMWRNAHPKTVSFWYEI 541 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS-----Y 579 + I + ++ + +++D + L + LPSGR++ Y + + Sbjct: 542 EDTVRRAIAAPRQTFTCRK-----LKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISYMG 596 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N+ +R+ R TYGGKLTEN+ QA +RD++A M +GY+I LTVHDE++ E PDT Sbjct: 597 INSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPDT 656 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++F + L L+ +NP WA LPL A G+E+ YRK Sbjct: 657 EQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692 >gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2] gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2] Length = 650 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 232/703 (33%), Positives = 331/703 (47%), Gaps = 85/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 + ID ET S D++KCG KY AED +++ A+ D + D P + Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 +L SQK + GK LI F CK RN P H E W+ F +YC DV V I Sbjct: 121 RLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T + Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354 Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV + WR + + W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577 +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547 Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ R+ ++ TYGGKL ENIVQA +RD+LA + GY IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEV 607 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E P + +M WAKGL L ++G+ S Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649 >gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] Length = 650 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 231/703 (32%), Positives = 331/703 (47%), Gaps = 85/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 + ID ET S D++KCG KY AED +++ A+ D + D P + Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 +L SQK + GK LI F CK RN P H E W+ F +YC DV V I Sbjct: 121 RLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T + Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354 Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV + WR + + W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577 +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547 Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEV 607 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E P + +M WAKGL L ++G+ S Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35] gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35] Length = 650 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 232/703 (33%), Positives = 334/703 (47%), Gaps = 85/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 + ID ET S D++KCG KY AED +++ A+ D + D P + Sbjct: 1 MNIDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K AL + DV A N+ FERT L FN +P WICT+V + GLP++L VGE L Sbjct: 61 FKIALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 +L +QK + GK LI F CK RN P H E W+ F +YC DV V I Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T + Sbjct: 181 NKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQR 354 Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 415 HGKIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV + WR + + W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577 +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E P D + +M WAKGL L ++G+ S Y K Sbjct: 608 IVEIPK-DSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] Length = 653 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 332/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AE+ +++ A+ D + D P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus CGS03] Length = 653 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 333/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ + EG +L V+D + IEARV+AW A E+W+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] Length = 653 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 231/705 (32%), Positives = 327/705 (46%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D +P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + +V +A N+ FER L + + +W CT+V A GLP++L + L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + QK G +LI F CK + RN P H E W+ F EYC DV V I Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ E +L+ LDQ INDRG +D LA I+ E+++LT + Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + L +LK WL E G E L + + L+ L +V R+ S S+ K Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SD R+ G LQF GA+RTGRW+G + QNLPR S + + + Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + D + +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415 Query: 408 LYVTTYARSFNVAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +Y T A+ F++ +VT KD R GKV LALGYQGG A + M Sbjct: 416 IYEATAAQMFHL--GEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------ 467 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A+E+ + + WR + R+ Sbjct: 468 ----------------------------------ALENGIEEHELQDIVDRWRTANKRIK 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571 W+E +A ++NG + + K L + LPSGR L Y Sbjct: 494 NFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKEG 548 Query: 572 DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 D G Y + T + TYGGKL ENIVQA +RD+LAE M + GY IV VHD Sbjct: 549 DYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E V E P+ ++ + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 609 EAVAEVPEGEK-SIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A] gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A] Length = 653 Score = 641 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 231/705 (32%), Positives = 326/705 (46%), Gaps = 83/705 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S DLTK G+ KYA+ + ++LFA+ D PVE D +P + Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL + +V +A N+ FER L + + +W CT+V A GLP++L + L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + QK G +LI F CK + RN P H E W+ F EYC DV V I Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ E +L+ LDQ INDRG +D LA I+ E++ LT + Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + L +LK WL E G E L + + L+ L +V R+ S S+ K Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SD R+ G LQF GA+RTGRW+G + QNLPR S + + + Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + D + +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415 Query: 408 LYVTTYARSFNVAPAQVT---------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +Y T A+ F++ +VT KD R GKV LALGYQGG A + M Sbjct: 416 IYEATAAQMFHL--GEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------ 467 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A+E+ + + WR + R+ Sbjct: 468 ----------------------------------ALENGIEEHELQDIVDRWRTANKRIK 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR------- 571 W+E +A ++NG + + K L + LPSGR L Y Sbjct: 494 NFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKEG 548 Query: 572 DVGNNRSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 D G Y + T + TYGGKL ENIVQA +RD+LAE M + GY IV VHD Sbjct: 549 DYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHD 608 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E V E P+ ++ + + +M+ P WA+GLPL AEG+E+K Y K Sbjct: 609 EAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] Length = 653 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 333/706 (47%), Gaps = 85/706 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L +QK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ + EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +R++LA + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JKD6159] gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] Length = 650 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 230/703 (32%), Positives = 331/703 (47%), Gaps = 85/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 + ID ET S D++KCG KY AED +++ A+ D + D P + Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 +L +QK + GK LI F CK RN P H E W+ F +YC DV V I Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T + Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++V K Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354 Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV + WR + + W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577 +A T+++ RK V K L++ LPSGR+L Y VG N Sbjct: 494 KACQEAAINTVKS------RKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E P + +M WAKGL L ++G+ S Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1] gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1] gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1] gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1] Length = 688 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 271/694 (39%), Positives = 383/694 (55%), Gaps = 26/694 (3%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+TLF+D ET + + G YAE V+LFA+ D+ PV +WD MP L+ A Sbjct: 1 MSTLFLDLETYCEVPIQN-GTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59 Query: 61 LENTDVTIVAHNSYFERTVLKA-CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L + +V + AHNS+F+RTVL+ + + + RW T+V A ++ LP AL + + LK+ Sbjct: 60 LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119 Query: 120 SQKMEE--GKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K ++ GK+LI FCK R + H W F EY D+ R I ++L Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179 Query: 177 PLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + + E LW+LDQTINDRG VD LAH + V+ + L +T G V ++ Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 + + + GL L D+ ++T +R ++ L + ++ R++AS ++ K TL Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIAD-PDLPAELRELLGIRLQASTTSTSKYKTL 298 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352 + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP + +++ I L Sbjct: 299 AKGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLL 358 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GED 407 + +++ S +R C++A EGKKLVVADL+ IE R++AW+AGE WKL AF G D Sbjct: 359 FANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPD 418 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 LY YA++F V+P V KDQR IGKVMEL LGY+GG AF A+T G++L+ A Sbjct: 419 LYKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAW 478 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + +AE F W E C+ +K+ WR+ H VS W EL +A Sbjct: 479 PSIPADIIAEAEQFLAWRTEQRLGDFGLKPKTFVVCDALKRLWRRAHPAVSSFWKELEEA 538 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYL--N 581 + + D + ++D L + LPSGR L Y D SY+ N Sbjct: 539 ARLAV-----LRPGTTYDCRTLKARRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGVN 593 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 +R+ +R TYGGKL EN+ QA SRD+LA M AGY IVL+VHDE + E D DE Sbjct: 594 QYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRDE 653 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 F+A+ L LM +NP WA GLPL A G+E+ RYRK Sbjct: 654 FSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687 >gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] Length = 650 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 229/703 (32%), Positives = 331/703 (47%), Gaps = 85/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 + ID ET S D++KCG KY AED +++ A+ D + D P + Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 +L +QK + GK LI F CK RN P H E W+ F +YC DV V I Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T + Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++V K Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354 Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV + WR + + W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577 +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E P + +M WAKGL L ++G+ S Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31] gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31] Length = 656 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 219/704 (31%), Positives = 322/704 (45%), Gaps = 78/704 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL ID ET S +D+ K G KYA +D ++LFA+ D V++ D +P + Sbjct: 1 MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 + L++ A+N+ FE L ++ P+ +W CT+V G + L A+G A+ L Sbjct: 61 DLLKDETCIKYAYNAVFEWWCLN-MAGIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119 Query: 119 SSQK--MEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 K + G LI FC RN P+H E W LF EYC DV EI Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVVTEMEIG 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ +E +LW LD +N G VD L + I + R L +E +T + Sbjct: 180 RRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDITK--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E G +E+L + T +++ + +A +V R S+++V K Sbjct: 238 DNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDD--GKAKRVLEIRQELSKTSVKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + EAM D R+RG LQF GA+RTGR++G + QNLPR ++ + + Sbjct: 295 YKAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIKKGDGE 354 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + +S +R+ I SEG VV+D + IEARV+AW+AGE+W+++ F+T Sbjct: 355 LLEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVFKTHGK 414 Query: 408 LYVTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNT 461 +Y + ++ F V + K RA GKV ELALGYQG A M A+ GL Sbjct: 415 IYEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAADMGLTDEE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + WR+ R+ ELW Sbjct: 475 MKD-----------------------------------------IVDRWRKSSKRIVELW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---- 577 L A + +E G+ I + + ++ + LPSGR L Y Sbjct: 494 YALENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFLKENQFG 553 Query: 578 ------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 +N TT++ TYGGKLTENIVQA++RD LAE ++ G+ IV VHDE Sbjct: 554 QMQMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIVFHVHDE 613 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 I+ + P + + MT SWAKGL L A G+ Y K Sbjct: 614 IILDVPKS--VELEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655 >gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11] Length = 650 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 230/703 (32%), Positives = 330/703 (46%), Gaps = 85/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 + ID ET S D++KCG KY AED +++ A+ D + D P + Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYET 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 +L SQK + GK LI F CK RN P H E W+ F +YC DV V I Sbjct: 121 RLQSQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMTIA 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ P++ EQ W DQ INDRG + +L N + + +L ++ + +T + Sbjct: 181 NKIKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++V K Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354 Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV + WR + + W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577 +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ R+ ++ TYGGKL ENIVQA +RD+LA + + + IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEV 607 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E P + +M WAKGL L ++G+ S Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL] gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL] Length = 650 Score = 639 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 229/703 (32%), Positives = 331/703 (47%), Gaps = 85/703 (12%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 + ID ET S D++KCG KY AED +++ A+ D + D P + Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 +L +QK + GK LI F CK RN P H E W+ F +YC DV V I Sbjct: 121 RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ P+++ EQ W DQ INDRG + +L N + + +L + + +T + Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL + GL + +L + T Q L K+ T +A ++ R++ S+++V K Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR 354 Query: 351 TSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L F T Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV + WR + + W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR-- 577 +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 KACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 578 ----SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 ++ R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E P + +M WAKGL L ++G+ S Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649 >gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1] Length = 658 Score = 638 bits (1645), Expect = e-180, Method: Composition-based stats. Identities = 211/713 (29%), Positives = 310/713 (43%), Gaps = 94/713 (13%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M T+ ID ETRS D+TKCG+ YA+ + L + DD V+L+D + +P+ + Sbjct: 1 MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100 AL + V A N FER L + P W CT++ Sbjct: 61 TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDRNKP-NHREAWRLFG 158 R+ GL S L + G ALKL QKM EGK LI FC +T + + + P + E W F Sbjct: 121 RTLGLSSTLASAGAALKLEQQKMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWETFK 180 Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 Y K DV I +RL P+ E +YLDQ INDRG VD+ L + + Sbjct: 181 AYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQAKA 240 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 L E+ LT + + + +L WL E G + L + + +L + K V Sbjct: 241 TLSSEMRRLTG--IENPNSVYQLLEWLG-EQGYKSDCLDKAAVKELLKTVKDP---VKSV 294 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R+ S+S+V K + A SD R RG F GASRTGRW+G + QNLP+ Sbjct: 295 LELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIPD 354 Query: 337 EELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + + D +S +R+ + G K ++AD + IEARV+AW+A Sbjct: 355 LTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIAWLA 414 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKM 451 GE+W++ AF G D+Y + ++ F V + V + R GKV ELA GY G A + M Sbjct: 415 GEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAMKAM 474 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 LNL+ + +++ WR Sbjct: 475 GGDA-LNLSD---------------------------------------SELKQIVTDWR 494 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570 + + W + A ++ I+ + + L + LPSGR L Y Sbjct: 495 DASPNIVKFWWTVDDAVKKAIKQKIT------TETHGLQFSYQSKMLFITLPSGRKLCYA 548 Query: 571 -RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 +G N+ + T ++ R +YG K ENIVQAV+RD+L M Sbjct: 549 HPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQTM--RCC 606 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV +HDE++ E + + M P+WA+GL L+A+GYE + YRK Sbjct: 607 FIVGHIHDEMIIEADR--RMSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657 >gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 658 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 211/694 (30%), Positives = 314/694 (45%), Gaps = 76/694 (10%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 +L +D ET S ++L++CG+ +Y +D ++L ++ DD V D +P + Sbjct: 20 KSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVA 79 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 AL++ V A+N+ FERT L A + W CT+V A + GLP +LK VG L L+ Sbjct: 80 ALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLA 139 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKRL--E 176 QK+ EGK+LI F R++P+ AW LF +Y DV V I ++L Sbjct: 140 HQKLAEGKDLIKYFSLPTKTGI---RHQPSDDSAAWALFKQYNARDVEVETTIRRKLSHH 196 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 P+ + + +DQ INDRG +D LA R + + LT + + Sbjct: 197 PVPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LDNPASP 254 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 +L++WL E G + + + L + T + R S+S+V K + + Sbjct: 255 LQLQSWL-AEQGCKISSMAKEDVDSALDT---ATGSVREALELRQDLSKSSVAKYRKMAD 310 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--- 353 A +DGR G LQF GASRTGRW+G + QNLPR + + H + Sbjct: 311 ATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLY 370 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 P +S +R+ I SE + +VAD + IEARVLAW+AGE+ L AF GEDLY T Sbjct: 371 PSVPDTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCATA 430 Query: 414 ARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNS 470 + F V + + R GK+ LA GY G A + M + GL + Sbjct: 431 SAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMGALKMGLTASELQ------- 483 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + AWR + + +W+++ Q Q Sbjct: 484 ----------------------------------PIVDAWRAANPNIVAMWHDVDQTAIQ 509 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN--NRSYLNTTT---- 584 I + + + K L + LPSGR L Y G NR + T Sbjct: 510 AITTRSTVT------LGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYWGQ 563 Query: 585 ---RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 R+ + TYGGKL ENIVQA +RD+LAE + AG+++V+ +HDE+V + Sbjct: 564 GINRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKDSG 623 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + LM P+WA GLP+ A GY+ Y K Sbjct: 624 TTVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657 >gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 273/725 (37%), Positives = 371/725 (51%), Gaps = 63/725 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC +P L AL + Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PGVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DV R++ KRL Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG +D L + V+ + L Q E+LT G V ++ + Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L G+ L D+ + T R + L ++ + R +AS ++ K L+ Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVDDPA-LPETVRELLSIRRQASSTSTAKYQALLHCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET------------ 404 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCWH 427 Query: 405 ----------------------------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 G+D+Y YA SF +AP V+K+QR IGKV E Sbjct: 428 TGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 LALGY GG AF A+ ++L A + P ++A W + NH Sbjct: 488 LALGYGGGVGAFAAFAALYHIDLEAMAA--QAVFPPLLLQEATELLEWTKANHRPTFDLS 545 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPET-----THTCCGITVQYRRA 600 Query: 557 NLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDIL 610 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+L Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVL 660 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 A M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+++ Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDT 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 YRYRK 725 >gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 651 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 215/699 (30%), Positives = 329/699 (47%), Gaps = 80/699 (11%) Query: 8 FETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 ET S +DL CG+ KY +ED ++LFA+ DD PV++ D +P + + ++ Sbjct: 1 METYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPA 60 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SSQKM 123 + AHN+ FER L + +W C+++ A GLP++LK VG L L QKM Sbjct: 61 IIKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKM 120 Query: 124 EEGKELIARFCKGETH---ECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE--P 177 GK LI+ FCK RN P + E W+LF +YC DV REI +L+ P Sbjct: 121 RIGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFP 180 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + + E ELW DQ +ND G +D+ + HT+ +L E E +T G+ + + Sbjct: 181 IPASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNGI--GPKKIA 238 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +LK W+ + +E L + +L ++P+ +V R + ++++ K + + Sbjct: 239 QLKEWICRKEDRSIESLDKDAVIELLKD-SSISPETRRVLQIRQESGKTSITKYAAIQRS 297 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD---P 354 + +D RL G LQF GA+RTGRW+G +F PQNLPR + + EL + + + D Sbjct: 298 VCNDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYG 357 Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 Q+ S +R+ VI G +AD + IEAR+ AW E+W+ + F T +Y + A Sbjct: 358 SYNQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAA 417 Query: 415 RSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNTFAHLVKTNSA 471 + F+V VTK D R GKV ELALGY GG A ++M + GL+ + Sbjct: 418 QMFHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMGGADMGLSEDEMQD------- 470 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + WR + ++W + A Sbjct: 471 ----------------------------------IVNKWRLASPNIKKMWYRVQDAAYTA 496 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------GNNRSYLNT-- 582 + K + V V L LPSGR L Y G+ +Y Sbjct: 497 VRERKRVSV-----VHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGS 551 Query: 583 -----TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 T++ R+ T+GGKL EN++QA++RD LA+ M+ GY I++ +HDE+V E P Sbjct: 552 DQDGKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVP 611 Query: 638 -DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +T E + +M WA GL L A+G+ S+ YRK Sbjct: 612 SETAESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650 >gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9] gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9] Length = 640 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 224/696 (32%), Positives = 330/696 (47%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL+++T + Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ +L WL E G LT+ ++ L + + + +V +++ + S++ K Sbjct: 237 ANPNSRAQLLPWL-KEHGYSANGLTKADVEQELKTAEG---ELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + VR+ ++A +G V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T + TYGGKL ENIVQA +RDILAE ++ AGY +V VHDE + E Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 273/725 (37%), Positives = 371/725 (51%), Gaps = 63/725 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC +P L AL + Sbjct: 11 LWGDLETYSPVPMA-HGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DV R++ KRL Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG +D L + V+ + L Q E+LT G V ++ + Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L G+ L D+ + T R + L ++ + R +AS ++ K L+ Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVDDPA-LPETVRELLSIRRQASSTSTAKYQALLHCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET------------ 404 + + S +RSC+IA + KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 368 MALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTWH 427 Query: 405 ----------------------------GEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 G+D+Y YA SF +AP V+K+QR IGKV E Sbjct: 428 TGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 LALGY GG AF A+ ++L A + P + A W + NH Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAA--QAALPPLLLQQATELLEWTKANHRPTFDLS 545 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETA-----HTCCGITVQYRRA 600 Query: 557 NLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDIL 610 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+L Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVL 660 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 A M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+++ Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDT 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 YRYRK 725 >gi|139473888|ref|YP_001128604.1| phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2] gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2] Length = 640 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 224/696 (32%), Positives = 329/696 (47%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E G + LT+ ++ L + + + +V +++ + S++ K Sbjct: 237 DNPNSRAQLLPWL-KEHGYSVNGLTKADVEQELKTAEG---ELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + VR+ ++A + V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T + TYGGKL ENIVQA +RDILAE ++ AGY +V VHDE + E Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047] gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047] Length = 640 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 224/696 (32%), Positives = 328/696 (47%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 KL +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLVQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E G + LT+ ++ L + + + +V +++ + S++ K Sbjct: 237 DNPNSRAQLLPWL-KEHGYSVNGLTKADVEQELKTAEG---ELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + VR+ ++A + V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T + TYGGKL ENIVQA +RDILAE ++ AGY +V VHDE + E Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] Length = 640 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 226/696 (32%), Positives = 328/696 (47%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLP++L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H W++F YC DV V I Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E G LT+ ++ KK + +V +++ + S++ K Sbjct: 237 DNPNSRAQLLPWL-KEHGYSANGLTKADVEQ---ELKKAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + VR+ ++A +G V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + V WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGVVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K + + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGK------IRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 R T + TYGGKL ENIVQA +RDILAE ++ AGYD+V VHDE + E Sbjct: 547 GQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM+ P WA+GLPL +EGY +K Y K Sbjct: 604 SGLIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] Length = 640 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 225/696 (32%), Positives = 327/696 (46%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLP++L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H W++F YC DV V I Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E G LT+ ++ KK + +V +++ + S++ K Sbjct: 237 DNPNSRAQLLPWL-KEHGYSANGLTKADVEQ---ELKKAEGELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + VR+ ++A +G V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ I K + + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPIKLGK------IRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 R T + TYGGKL ENIVQA +RDILAE ++ AGYD+V VHDE + E Sbjct: 547 GQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes MGAS315] gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage 315.6] gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1] gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus pyogenes MGAS315] gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1] gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 640 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 222/696 (31%), Positives = 328/696 (47%), Gaps = 78/696 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+ K G+ KYA ED ++LFA+ D VE D +P+ +K Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 + L + V A N+ FER L L + +W CT+VLA+ GLPS+L+ L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 KL+ +K GK LI F CK RN P H E W++F +YC DV V I Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++LE P+ +E + + DQ INDRG +D L + DV+ L EL++LT + Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL E G LT+ ++ L + + + +V +++ + S++ K Sbjct: 237 DNPNSRTQLLPWL-KEHGYSASGLTKADVEKELKTAEG---ELKRVLELKLQTAMSSLKK 292 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + A SDGR+ G LQF GASRTGRW+G V QNL R + + Sbjct: 293 YEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352 Query: 351 TSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + + VR+ ++A +G V+D + IEARV+AW AGEQW+L F T Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 +Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A+ + + WR+ + ++ + W ++ +A Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580 + I++ + K R + K L + LPSGR+L Y D G+ Y Sbjct: 493 AIKAIKSRAPVRLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546 Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + T + TYGGKL ENIVQA +RDILAE ++ AG+ +V VHDE + E Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE---G 603 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639 >gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] Length = 726 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 218/697 (31%), Positives = 337/697 (48%), Gaps = 73/697 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + L ID ET S ++ G+ Y + + ++LFA+ D V+L D +P + Sbjct: 80 IKILSIDIETYSDNEI-TNGVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL ++++ A N+ FER + L + +W CT + A GLP++L++ GE LKL Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 +K+ EG ELI F CK RN P H + W F YC DV V + I ++ Sbjct: 199 KHKKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQRK 258 Query: 175 -----LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L P++ E+ L+ DQT+ND+G C+D LA+ ++ D + +L E++ +T Sbjct: 259 VCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN-- 316 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + +LK WL + G ++ L + + + + + +V R +S+++V Sbjct: 317 LENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELAT---GASEDVKRVLYLRSMSSKTSVK 373 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---L 346 K + A SD +L LQF GA +TGRW+G + NLPR S L + + Sbjct: 374 KYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKNDF 432 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + + I+S +R+ IA E L V D + IEARV+AW+AGE+W+LK F Sbjct: 433 ELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGSG 492 Query: 407 DLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +Y + AR F V +T D R GK+ ELALGY+GGA A + M + Sbjct: 493 RIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGAD---------- 542 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 M + PE A ++ WR + +LW ++ Sbjct: 543 -------------------KMGLSDPEIA-----------QIVSGWRNSSPNIVKLWRDV 572 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR---DVGNNRSYL- 580 +A ++ I + + I ++ + +K N L + LPSGR L Y V N Y+ Sbjct: 573 ERAAKEAILSDRIIKLKQ----GGLIFRKTSNILQIKLPSGRLLSYPLAKIVDNKICYMS 628 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N TTRQ TYGGKL ENIVQA++RD L E ++ K GY+I VHDEI+ E P Sbjct: 629 QNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPTD 688 Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + A + ++ + ++A LPLK EGY + Y K Sbjct: 689 ESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725 >gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] Length = 661 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 223/707 (31%), Positives = 328/707 (46%), Gaps = 82/707 (11%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQ----V 56 T+ +D ET S ID+ + G+ YA D ++L + +D V++ D P+ Sbjct: 2 TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 E L + DV A+N+ FERT L + +P +W CT V A + GLP L VGEAL Sbjct: 62 FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121 Query: 117 KLS--SQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170 L QK + GK LI FCK + RN P H + W+LF EY + DV Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181 Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I ++L+ P++ +EQELW LDQ IND G +D+ LA + Q + + +L QE LT Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLTG- 240 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV---LSSNKKLTPQA--IQVFNNRMRA 283 +++ L +LK W F+ GL + +T+ + + L K +++ R Sbjct: 241 -LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIRKEL 299 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 +++V K + A+ DG LRG LQF GA+RTGRW+G + NLP+ +L + + Sbjct: 300 GKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLARDL 359 Query: 344 THLPTSITSDPDPLQII---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 T + I S +R+ I SEG + VV+D + IEARV+AW+A E+W+L Sbjct: 360 VKQEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWRLN 419 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 F T +Y + A+ F+V + K R GKV ELALGY GG A + M + Sbjct: 420 VFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMDKAGTIP 479 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + WR+ + Sbjct: 480 DDE-----------------------------------------IPMIIANWRKASPNIC 498 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +LW A IE + I + + L + LPSGR L Y D Sbjct: 499 KLWRNAEAAARAAIEERRTIKLK-----HGLSFSYINRILFIGLPSGRKLAYYDTRIEDD 553 Query: 579 ----------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 ++ T++ R T+GGKL ENIVQA +RD LA M + AGY IV+ V Sbjct: 554 EKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQIVMHV 613 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 HDEI+ + P+TD + +M WA+ LPL+ +GYE+ Y+K Sbjct: 614 HDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660 >gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 278/726 (38%), Positives = 375/726 (51%), Gaps = 65/726 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DV R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L E G+ L D+ + T +R L L ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + D Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWH 427 Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 G+D+Y YA SF +AP VTK+QR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIE 495 LALGY GG AF A+ ++L A + P ++A +W + N P + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLS 545 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I + + + M+ + Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSR 599 Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG++ Sbjct: 660 LAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] Length = 656 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 214/704 (30%), Positives = 310/704 (44%), Gaps = 78/704 (11%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ETRS ID+ K G KYA+ D ++LFA+ +++ PV++ D + +P L Sbjct: 1 MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL + +V A+N+ FE L C + PI +W CT+ G + L A G+A+ L Sbjct: 61 QALADPNVIKHAYNAAFEWYCLN-CAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119 Query: 119 S--SQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 QK+ GK LI FC K N+P H + W LF EYC DV REI Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 KRL+ P+ +E+ LW +D +N G VD L I + +L E SLT + Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLTG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L WL + G ++L + T +L + ++ R + ++++ K Sbjct: 238 QNPNSAAQLLQWL-RDNGTEADNLQKATVAELLGGIN--PNKVRRMLEIRQQLGKTSIKK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A R+RG Q+ GA+RTGRW+G + QNLPR + + + Sbjct: 295 YVAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNYD 354 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +S +R+ I S G K VVAD + IEARV+AW+AGEQW + F T Sbjct: 355 GVRILYGNVPDTLSQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVNEVFATHGK 414 Query: 408 LYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y T ++ F V ++ K R GKV LALGYQGG A M + GL Sbjct: 415 IYEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMGALQMGLTEEE 474 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + WRQ + R+ LW Sbjct: 475 LPD-----------------------------------------IVQRWRQANPRIKGLW 493 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--GNNRS- 578 + A +E + + ++ L + LPSGR L Y NR Sbjct: 494 YAIENAALAVMETAQPQGINGLIFALEGDIIYGQSFLTVRLPSGRKLFYPKPFLKENRFE 553 Query: 579 -------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + TR+ TYGGK+ ENIVQA++RD LA + G +V VHDE Sbjct: 554 KMAVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKGLQVVFHVHDE 613 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ + P E + LM WA GL LK G+ES Y K Sbjct: 614 VIIDAP--METTVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655 >gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] Length = 656 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 201/701 (28%), Positives = 306/701 (43%), Gaps = 72/701 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +D+ K G+ KY E ++LFA+ +D V + D +P + Sbjct: 1 MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L N +V A+N+ FE T L +W CT++ G P+ L +G AL + Sbjct: 61 SDLNNPEVIKHAYNASFEITGLNRY-GYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119 Query: 119 SSQK--MEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172 K + GK LI FC K RN P H + W LF EY DV E + Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ Q+ W +D +N RG +D+ L I D +T+L ++ +T + Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITG--L 237 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ +L TW+ + L LE LT+ T L + + + + R ++S++ K Sbjct: 238 TNPNSRNQLLTWINDNSDLKLEKLTKETVAESLQIAEDQVAEVLHI---RRALAKSSISK 294 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ A+ +DGR+RG LQF GA+RTGRW+G + QNLP + + + Sbjct: 295 YESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHDVPVAMDTAIRLVKNGNAR 354 Query: 351 TSDPDPLQI---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 I +S +R+ +A EG L V+D + IEARVL+W+A E+W+ F G D Sbjct: 355 GVKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKWRQDVFAKGGD 414 Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +Y + + F V + + R GKV ELALGYQGG A M Sbjct: 415 IYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMG------------- 461 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A++ + WR + R+ W ++ Sbjct: 462 ---------------------------ALKQGLTEDELPDIVHRWRGANPRICGFWYDVD 494 Query: 526 QAFEQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS------ 578 A + + + + + + + L + LPSGR L Y N + Sbjct: 495 GAALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYPQPYINENQFGKPA 554 Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 Y + + TYGGKL ENI QA++RD LA + KAGY ++ +HDE+V E Sbjct: 555 LHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYKPLMHIHDEVVLEV 614 Query: 637 PDTD--EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P E + +M + WA GL L A+G+ S Y K Sbjct: 615 PKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655 >gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 726 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 279/726 (38%), Positives = 375/726 (51%), Gaps = 65/726 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C +DIP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DV R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 S E LW+LDQTINDRG VD LA V+ + L E+LT G V ++ + Sbjct: 189 SGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L E G+ L D+ + T +R L L ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + D Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427 Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 G+D+Y YA SF +AP VTK+QR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIE 495 LALGY GG AF A+ ++L A + P ++A +W + N P + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLS 545 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDE++ E D FNA+ L LM + P WA+GLPL AEG++ Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 280/726 (38%), Positives = 375/726 (51%), Gaps = 65/726 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ D PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F +Y + DV R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L E G+ L D+ + T +R L L ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427 Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 G+D+Y YA SF +AP VTK QR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495 LALGY GG AF A+ ++L A + P ++A W + NH P + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAA--QAALPPLLLQEATELLEWTKANHRPTFGLS 545 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 279/726 (38%), Positives = 374/726 (51%), Gaps = 65/726 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE +LFA+ D PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F +Y + DV R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L G+ L D+ + T +R L L ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + D Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL+AF Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWH 427 Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 GED+Y YA SF +AP VTK QR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495 LALGY GG AF A+ ++L A + P ++A +W + NH P + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANHRPTFGLS 545 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 277/726 (38%), Positives = 373/726 (51%), Gaps = 65/726 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ D PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F +Y + DVT R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L E G+ L D+ + T +R L L ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G + P NLPRP+ S + I + D Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427 Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 G+D+Y YA SF +AP VTK QR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIE 495 LALGY GG AF A+ ++L A + P + A +W + N P + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQQAMEALQWTKANQRPTFGLS 545 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53] gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53] Length = 726 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 280/726 (38%), Positives = 373/726 (51%), Gaps = 65/726 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C + IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DVT R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L G+ L D+ + T +R L L ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWH 427 Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 G+D+Y YA SF +AP VTK QR IGKV E Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495 LALGY GG AF A+ ++L A + P ++A W + NH P + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAA--QAALPPLLLQEATELLEWTKANHRPTFGLS 545 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 726 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 280/726 (38%), Positives = 374/726 (51%), Gaps = 65/726 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ + PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C + IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F EY + DVT R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L G+ L D+ + T +R L L ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E + I + D Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWH 427 Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 G+D+Y YA SF +AP VTK QR IGKV E Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495 LALGY GG AF A+ ++L A + P ++A W + NH P + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAA--QAALPPLLLQEATELLEWTKANHRPTFGLS 545 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG+E Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719 Query: 670 SKRYRK 675 + RYRK Sbjct: 720 THRYRK 725 >gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] Length = 668 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 214/709 (30%), Positives = 306/709 (43%), Gaps = 82/709 (11%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVL-KE 59 L ID ETRS +D++K G +YA+ D ++LFA+ +DD PVE+ D D P + +E Sbjct: 5 HLSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEE 64 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 AL + DV A+N+ FE L P+ +W CT+ G + L A G+A+ L Sbjct: 65 ALRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLP 123 Query: 120 --SQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFK 173 QK+ GK LI FC K N+P H + W LF EYC+ DV EI + Sbjct: 124 QDKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEILR 183 Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 RL P+ E+ LW LD +N G VD L + +V KL E LT + Sbjct: 184 RLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELTG--LD 241 Query: 232 SSRCLEKLKTWLFLETGLHLED------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +L W+ H +D L + T + L L ++ R + + Sbjct: 242 NPNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLGK 301 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++V K + A R+RG Q+ GA+RTGRW+G + QNLPR + + + Sbjct: 302 TSVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELVK 361 Query: 346 LPT---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + +S +R+ I SEG K VVAD + IEAR +AW+AGEQW + F Sbjct: 362 AKNYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQWVNEVF 421 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTG 456 T +Y T A+ F V ++TK R GKV LALGYQG A M + G Sbjct: 422 ATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAMGALKMG 481 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L + + WR + R Sbjct: 482 LTEDELPD-----------------------------------------IVTRWRNANKR 500 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--G 574 + LW + + ++ + + ++ L + LPSGR L Y Sbjct: 501 ICGLWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYYPKPFLQ 560 Query: 575 NNRS--------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 NR + TR+ + TYGGK+TENIVQA++RD LA + + G V Sbjct: 561 ENRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQKGLQTVF 620 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ + P E + LM WA GL LK G+ES Y K Sbjct: 621 HVHDEVIIDAP--METTVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667 >gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] Length = 644 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 224/694 (32%), Positives = 319/694 (45%), Gaps = 75/694 (10%) Query: 4 LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L ID ET S + K G +Y +D ++LFA+ FDD PVE+ D DP +P+ + +AL Sbjct: 3 LSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMTKDP-LPERVVDAL 60 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 N ++T A N+ FE LK F D W CT VLA LP++L V +AL+L Sbjct: 61 YNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGEA 119 Query: 122 KMEEGKELIARFCKGE--THECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLEPL 178 K GK LI F T RN P E W + EY + DV V R I KRL L Sbjct: 120 KDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRLLSL 179 Query: 179 --SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E E W LDQ IN RG VD+ L D + + + LT + + Sbjct: 180 KPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATESSKILTG--LENPNST 237 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 +LK WL G LE + + +L+ + + +V NR S++ K + Sbjct: 238 MQLKEWLTARLGYDLETMRKDDVSNLLA--QDIPSDVRKVLQNRQVLGNSSIKKYLAMKN 295 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTSITSD 353 A+ SDGR+ G LQF GA R+GRW+G V QNLPR + + + + Sbjct: 296 AVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEMLDLLY 355 Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +P +I +R+ ++A +G + +VAD + IEARV+AW+A E+W+ F G D+Y + Sbjct: 356 GNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIYCASA 415 Query: 414 ARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F+V + V R GKV ELALGY GG A + M S + +++ Sbjct: 416 SSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKGEIPEKELPGIIEA--- 472 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 WRQ R+++ W + A +Q Sbjct: 473 --------------------------------------WRQASPRITKFWKDADSAAKQV 494 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRS--------YLN 581 + G+ + R + K K L + LPSGR L Y +G N+ ++ Sbjct: 495 VRTGEPV----RIIQGNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYDGMD 550 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 R TYGGKL ENIVQAV+RD LA M+ +KAGY IV +HDE+V E P Sbjct: 551 QVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAPIGV- 609 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + + +M W +GL L A G+E+ Y K Sbjct: 610 GSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643 >gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G] Length = 726 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 253/730 (34%), Positives = 355/730 (48%), Gaps = 59/730 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M+ LF+DFET S DL K G YAE V++ + FDD PV++WDC + MP L Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 AL N+ + +V HN S F+R ++K C+ DIP+ I T++ A + LP +L A+ Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L +S+ K + GK LI RF K R H + W LF +Y D+T R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+F +L S E + LDQ INDRG+ VDVALA + V+ + +L +E + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ L + + ++T +L+ + A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346 K N L+ +SD R RG +Q+ GA RT R++G F PQNL R +ELD+ I+ L Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y T + F + P + K++ R IGK EL LGY GG AF + A GL+L A Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476 Query: 464 HLVKTNSAPEEW------------EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + W ++A+ R + + I D + C+ +K+ WR Sbjct: 477 KTMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN--------NLILMLP 563 + H W ++ A I N R V + N L + LP Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596 Query: 564 SGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTYGGKLTENIVQAV 605 SGR + Y VG + S N TRQ +YTY GKL EN QA+ Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 RD+LA ++N GY IVL VHDEI+CETPD E+N + L LM P WA+G PL A Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716 Query: 666 EGYESKRYRK 675 EG E KRY K Sbjct: 717 EGAEMKRYAK 726 >gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H] Length = 726 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 252/730 (34%), Positives = 354/730 (48%), Gaps = 59/730 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M+ LF+DFET S DL K G YAE V++ + FDD PV++WDC + MP L Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 AL N+ + +V HN S F+R ++K C+ DIP+ I T++ A + LP +L A+ Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L +S+ K + GK LI RF K R H + W LF +Y D+T R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+F +L S E + LDQ INDRG+ VDVALA + V+ + +L +E + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ L + + ++T +L+ + A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346 K N L+ +SD R RG +Q+ GA RT R++G F PQNL R +ELD+ I+ L Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y T + F + P + K++ R IGK EL LGY GG AF + A GL+L Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMT 476 Query: 464 HLVKTNSAPEEW------------EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + W ++A+ R + + I D + C+ +K+ WR Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN--------NLILMLP 563 + H W ++ A I N R V + N L + LP Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596 Query: 564 SGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTYGGKLTENIVQAV 605 SGR + Y VG + S N TRQ +YTY GKL EN QA+ Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 RD+LA ++N GY IVL VHDEI+CETPD E+N + L LM P WA+G PL A Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716 Query: 666 EGYESKRYRK 675 EG E KRY K Sbjct: 717 EGAEMKRYAK 726 >gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 669 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 247/675 (36%), Positives = 364/675 (53%), Gaps = 37/675 (5%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN--LDI 88 ++ + +D PV WD MP+ LK L++ + I A NS+F+RT+++ + Sbjct: 1 MIITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRHDMPSVIAG 60 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHECLYDR- 145 I RW T+V A ++GLP L + E L ++ K +EGK LI FCK R Sbjct: 61 GIERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTIHRA 120 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS--KEQELWYLDQTINDRGYCVDVAL 203 H E W+ F +Y D+ R I K+L + KE LW+ DQ INDRG +D L Sbjct: 121 TSKTHPEEWKRFLKYAGNDIEAMRAIDKKLPVWNYQGKELALWHFDQLINDRGVQMDTVL 180 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 A V E+ L + ++LT V ++ + L + G+ L D+ ++T +R + Sbjct: 181 AEAAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTLERRI 240 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + +L ++ R++AS ++ K TL++ ++ DGRLRGTLQF GASRTGRW+G + Sbjct: 241 AD-PELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRL 299 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADL 381 F PQNLPRP E +D I L + +++IS +R C++A +GKKLVV+DL Sbjct: 300 FQPQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVVSDL 359 Query: 382 AGIEARVLAWMAGEQWKLKAFE----------------TGEDLYVTTYARSFNVAPAQVT 425 + IE RVLAW+AGE+WKL+AF G DLY YAR+FN++P VT Sbjct: 360 SNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPDDVT 419 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 K QR IGKVMEL LG+ GG AF A GL+L+ A+ N +A+++ + Sbjct: 420 KLQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWYQAS 479 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + + + AC+ +K+ WR H W+E+ + I N K ++ Sbjct: 480 VKQKRTFGLSE-QVFIACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPKQTFVCRK-- 536 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTEN 600 + +++D + L + LPSGRS+ Y + G+ SY+ NT +R+ R TYGGKL EN Sbjct: 537 ---LKIRRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAEN 593 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 QA +RD++A M GY+I LTVHDE++ E PDTD F + L L+ +NP WA Sbjct: 594 ATQAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALD 653 Query: 661 LPLKAEGYESKRYRK 675 LPL A G+E+ YRK Sbjct: 654 LPLSAGGFEAYHYRK 668 >gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3] gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2] Length = 726 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 252/730 (34%), Positives = 354/730 (48%), Gaps = 59/730 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M+ LF+DFET S DL K G YAE V++ + FDD V++WDC MP L Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 AL N+ + +V HN S F+R ++K C+ DIP+ I T++ A + LP +L A+ Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L +S+ K + GK LI RF K R H + W LF +Y D+T R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E+F +L S E + LDQ INDRG+ VDVALA + V+ + +L +E + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ L + + ++T +L+ + A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPD-DARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346 K N L+ +SD R RG +Q+ GA RT R++G F PQNL R +ELD+ I+ L Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D+Y T + F + P + K++ R IGK EL LGY GG AF + A GL+L A Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476 Query: 464 HLVKTNSAPEEW------------EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + W ++A+ R +++ I D + C+ +K+ WR Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWR 536 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN--------NLILMLP 563 + H W ++ A I N R V + N L + LP Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596 Query: 564 SGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTYGGKLTENIVQAV 605 SGR + Y VG + S N TRQ +YTY GKL EN QA+ Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656 Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 RD+LA ++N GY IVL VHDEI+CETPD E+N + L LM P WA+G PL A Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716 Query: 666 EGYESKRYRK 675 EG E KRY K Sbjct: 717 EGAEMKRYAK 726 >gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] Length = 631 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 222/685 (32%), Positives = 319/685 (46%), Gaps = 85/685 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L SQK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + +L WL E GL + +L + T Q L K+ T +A ++ R++ S+++ Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYL---KEATGKAKKMLEIRLQMSKTS 295 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 V K N + + M SD R+RG QF GA TGRW+G QNL + S EL+ + Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354 Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 D D P ++S VR+ A EG +L V+D + IEARV+AW A EQW+L Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + M + G+ Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE 474 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 N LV + WR + + Sbjct: 475 ENELQGLVDS-----------------------------------------WRNANPNIV 493 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNN 576 W +A T+++ RK + K L++ LPSGR+L Y VG N Sbjct: 494 NFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 577 R------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ R+ ++ TYGGKL ENIVQA +RD+LA + G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607 Query: 630 DEIVCETPDTDEFNASMLYHLMTSN 654 DE++ E P + +M Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKP 631 >gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens FD-1] Length = 654 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 202/710 (28%), Positives = 317/710 (44%), Gaps = 92/710 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S D+++CG+ +YAE ++L ++ D PV D +P + Sbjct: 1 MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP--------------IHRWICTLVLARSNG 104 AL + V A N FER L + P W C ++ +R G Sbjct: 61 SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCK--GETHECLYDRNKPNHREAWRLFGEYCK 162 + S+L +G+ L+L +K++EGK+LI FC + L +K + + W+ F EY + Sbjct: 121 MMSSLDDMGKLLRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYDKSDAPKKWKEFIEYNR 180 Query: 163 GDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 DV V +I + L P+ E +Y+DQ INDRG VD A ++ + +L Sbjct: 181 RDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKELFP 240 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 +L+ LT + + ++K WL + G+ + L + + +L+S +V Sbjct: 241 KLKELTR--LDNPNSPAQMKDWL-MRQGIEADSLDKKSMPLLLASAPDD---VKEVLMLY 294 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + S+S+V K +T++ A DGR RG F GA+RTGR++G + QNLP+ + Sbjct: 295 QQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDNLAET 354 Query: 341 QIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + + D ++S +R+ I EGKK VVAD + IEARV++W+AGE W Sbjct: 355 KWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISWLAGETW 414 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-T 454 +++AF GED+Y A+ F V + V R GK+ ELA GY G A + M Sbjct: 415 RMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIKAMGGTE 474 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 L + LV+ WR+ Sbjct: 475 LNLTDDELYSLVE-----------------------------------------DWRKTS 493 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + +LW+++ + I + ++ + + + L + LPSGR L Y Sbjct: 494 PNIVKLWSDVQSVAVKVITDQSSMTFGR------LKFSYEIGILFIELPSGRRLAYVRPK 547 Query: 575 NNR--------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 + +Y ++ R TYG KL ENI Q ++RD+L M DIV Sbjct: 548 VEKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSMAAMKDM--DIV 605 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ E + + HLM P WA+GL L+A+GYE + Y K Sbjct: 606 GHVHDEVIVECD--PDTTVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653 >gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 654 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 206/701 (29%), Positives = 304/701 (43%), Gaps = 74/701 (10%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET SP D++ G+ KY+E ++LF++ + V + D +P + Sbjct: 1 MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L+ +V A+N+ FE T L + +W CT++ G P L +G+AL L Sbjct: 60 LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118 Query: 119 SSQKMEE--GKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 + KM++ G LI F CK RN P H + W + Y K DV E + Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +RL P+ + ++ W +D +N G +D L I + + L +E LT + Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELTG--L 236 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 S+ +L WL T L LE LT+ + ++ L A +V R + ++S+V K Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVAAAMTDADDL---AKKVLTIRKKLAKSSVSK 293 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348 + A DGRLRGTLQF GA+RTGRW+G + QNLPR ++ + + + Sbjct: 294 YEMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRV 353 Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 D +S +R+ +IA EG L VAD + IEARV+AW++GE W+ K F G D Sbjct: 354 GLGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGD 413 Query: 408 LYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAH 464 +Y + + F V + V R GKV ELALGYQGG A + M + GL + Sbjct: 414 IYCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMGALDMGLTEEELPN 473 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + WRQ + + W + Sbjct: 474 -----------------------------------------IVGLWRQASPNIVKFWYTV 492 Query: 525 HQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVG--------N 575 +A T+ G + L V + + LPSGR L Y D Sbjct: 493 EKAAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNNFDKE 552 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + E TYGGKL ENI QAV+RD LA +M + G ++ +HDE V E Sbjct: 553 AVHFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDEAVIE 612 Query: 636 TPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 P + ++ WA+GL L A G+ + Y K Sbjct: 613 VPKDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653 >gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 643 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 211/704 (29%), Positives = 305/704 (43%), Gaps = 91/704 (12%) Query: 1 MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S ID+ K G +YA E ++LFA+ FD V++ D + +P + Sbjct: 1 MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL++ +V A+N+ FE L C + P+ +W CT+V A LP+ L GEAL + Sbjct: 61 TALQDMEVIKHAYNAAFEWYCLN-CAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119 Query: 119 SSQKMEE--GKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K + GK+LI FC K W+ F EY + DV EI RL Sbjct: 120 AEDKKKSAVGKQLIRYFCVKPYKP----------DAVKWKAFKEYNRQDVVSEMEIENRL 169 Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P+ E E W D +N G VD L + +I + +L E LT + + Sbjct: 170 SGFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLTQ--LENP 227 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 +L W+ + G LE+ + T + L L + +V R + +++V K Sbjct: 228 NSPTQLLNWVNAQ-GYPLENTQKATIESALKE--DLPLKVRRVLEIRQQLGKTSVKKYEA 284 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE------LDQIITHLP 347 + + R+RG QF GAS+TGR+SG + QNLPR Q L Sbjct: 285 MTNTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYLEPLAETRECVKRQDYETLK 344 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 S PD L S +R+ I S G + VVAD + IEARV+AW+A E W + F T Sbjct: 345 LLFDSIPDTL---SQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHGK 401 Query: 408 LYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 +Y T ++ F+V ++ K R GKV LALGYQGG A M + GL+ Sbjct: 402 IYEATASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMGALKMGLSEEE 461 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + WR + R+ LW Sbjct: 462 LPE-----------------------------------------IVTRWRAANQRIVALW 480 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY 579 + + +T+ +G+A +K L + LPS R L Y +G N+ Sbjct: 481 SAVGSYALRTVRDGRARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCKPYIGLNQFG 540 Query: 580 L--------NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 N TT++ T+GGKL ENIVQ ++RD L E + T GY IV VHDE Sbjct: 541 GESLYFYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIVFHVHDE 600 Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ + + L +M WAKGL LK G+ + Y+K Sbjct: 601 VIVDA--GMDLTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642 >gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] Length = 643 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 213/695 (30%), Positives = 316/695 (45%), Gaps = 82/695 (11%) Query: 6 IDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 +D ET S D+ K G+ KYA ED ++ ++ + V L D + P+ LK + N Sbjct: 5 LDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLTKEE-FPEFLKNHILN 62 Query: 64 TDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEALK 117 D T A N+ FER L F W +V A+ GLP++L+ L Sbjct: 63 ADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERCASYLG 122 Query: 118 LSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFK 173 L QK GK LI F CK RN P H E W +GEY DV I + Sbjct: 123 LEEQKDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVVTQMAIAE 182 Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +LE P+ +E + + DQ INDRG +D L + DV+ L EL+++T ++ Sbjct: 183 KLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITG--LA 240 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + +L WL E G LT+ ++ L + + + +V +++ + S++ K Sbjct: 241 NPNSRAQLLPWL-KEHGYSANGLTKADVEQELKTAEG---ELKRVLELKLQTAMSSLKKY 296 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + AM SDGR+ G LQF GASRTGRW+G V QNL R + + Sbjct: 297 EAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDARGYVKKRDIDA 356 Query: 352 SD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + + VR+ ++A +G V+D + IEARV+AW AGEQW+L F T + Sbjct: 357 VEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKI 416 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 Y + ++ F + ++ K+ R GK+ ELALGYQGG A ++M Sbjct: 417 YEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG---------------- 460 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A+ + + WR+ + ++ + W ++ +A Sbjct: 461 ------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRAA 496 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYLN 581 + I++ I K R + K L + LPSGR+L Y D G+ Y Sbjct: 497 IKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYEG 550 Query: 582 TTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 + T + TYGGKL ENIVQA +RDILAE ++ AG+ +V VHDE + E Sbjct: 551 QGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE---GS 607 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + LM P WA+GLPL +EGY +K Y K Sbjct: 608 GLTIEEVNDLMAQAPDWAEGLPLNSEGYVTKYYMK 642 >gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU] gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF] gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS] Length = 735 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 251/735 (34%), Positives = 352/735 (47%), Gaps = 67/735 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVH----------DP 51 LF+DFET S DL K G YAE ++L ++ FDD P ++WD + Sbjct: 5 LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64 Query: 52 VMPQVLKEALENTD---VTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 P L L V +V HN F+R +++ C LDIP T+V A + LP Sbjct: 65 SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124 Query: 108 ALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGD 164 +L + E L + + K + GK LI RFCK R N H + W+ F Y + D Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRNTHPDEWKQFKHYARND 184 Query: 165 VTVTREIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +T REI+ ++ KE E+ LDQ INDRG+ VD LA V R +L + Sbjct: 185 ITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQEAA 244 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 ++ G ++ + L L+ L H+ + ++T +L +A QV R+ Sbjct: 245 QATYGGGLTGADFLPLLRD---LAPAHHIPNAQKSTLGDLLDDADLPD-EARQVIEMRLG 300 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A+ +A K L+ M++DGR RG LQ+ GA RT RW+G F PQNL R + L + Sbjct: 301 AASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLARG 360 Query: 343 ITHLPTSITSD-PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 I L D +++ + VR C+I + GKKLVVAD + +E R LAW+AGE L Sbjct: 361 IEALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALDT 420 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D+Y T + F ++P V +R IGK EL LGY GG AF + GL+L Sbjct: 421 FRAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLEE 480 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQ----ENHPEHAIED--------LFIGTACERVKKA 509 A + W A +M+ + P +D C+ +K+ Sbjct: 481 MAVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKRM 540 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARK-----------RRDVPLVYMKKDKNNL 558 WR+ H R + W +L +A I+N A R + L K N L Sbjct: 541 WRESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNWL 600 Query: 559 ILMLPSGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTYGGKLTEN 600 + LPSGR L Y +G + N TRQ ++TYGGKL EN Sbjct: 601 KIELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAEN 660 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 + QA+ RDILA M+ AGY+I+L+VHDE++ ETPDT E+N + L LM P+WAKG Sbjct: 661 VTQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAKG 720 Query: 661 LPLKAEGYESKRYRK 675 PLKAEG+E RY+K Sbjct: 721 FPLKAEGWEGYRYKK 735 >gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 712 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 267/713 (37%), Positives = 363/713 (50%), Gaps = 65/713 (9%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET SP+ + G+ YAE ++LFA+ D PV++WDC MP+ L AL N Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ-- 121 V + HNS+F+RTVL+ C ++IP+ RW ++ A ++ LP AL + E L++ + Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 122 KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--L 178 K ++GK L+A FCK C R + H W F +Y + DVT R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E LW+LDQTINDRG VD LA V+ + L + LT G+V ++ + Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L L E G+ L D+ + T +R L L ++ + R +AS ++ K L+ Sbjct: 249 LLHHLSTEHGVVLPDMQQHTVERCLDD-PLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDP 356 + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S + I + D Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDV 367 Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-------------- 402 + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL+AF Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWH 427 Query: 403 --------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 G+D+Y YA SF +AP VTK+QR IGKV E Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH-PEHAIE 495 LALGY GG AF A+ ++L A + P + A +W + NH P + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQQAVEALQWTKANHRPTFGLS 545 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 546 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599 Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P +G P Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712 >gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a] gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a] Length = 763 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 246/761 (32%), Positives = 360/761 (47%), Gaps = 93/761 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 LF+D ET S +DL K G YAE +++ + D+ V+ WDC P MP+ L++AL Sbjct: 7 LFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPRELRKAL 66 Query: 62 ENTD----VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 ++A+ F+R V++ + +D+P+ + T+++A + LP +L + L Sbjct: 67 RRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDMQCQVLG 126 Query: 118 LSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + ++ K + GK LI RFCK R + H E W F Y D+ RE++ R Sbjct: 127 VDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREVYWR 186 Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + + KE E+ +DQ INDRG+ VDV LA + V + +L +E G ++ Sbjct: 187 IPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERFGGKLTG 246 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + L L+ L + + ++T +L + + R+ AS +A K N Sbjct: 247 NDFLPALRD---LAPAFTIHNAQKSTLNDLLED-PDFPDEGKVLIEMRLGASSTASTKYN 302 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS------------------- 333 LV +++DGR RG LQ+ GA RT RW+G F PQNL R Sbjct: 303 PLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESDVA 362 Query: 334 ---RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 RSH + I + L + D ++ + VR C+I ++GKK VVAD + +E R LA Sbjct: 363 FWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRGLA 422 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---KDQRAIGKVMELALGYQGGAKA 447 W+AGE+ L F+ G D+Y T + F + P + KD R IGK EL LGY GG A Sbjct: 423 WIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYGGGVAA 482 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH----PEHAIED------- 496 F + A GL+L A ++K W A+ + + N P+ +D Sbjct: 483 FLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDERPTYIL 542 Query: 497 -LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG---------------KAIIA 540 + C+ +K+ WR+ H + W EL A I N KA+ Sbjct: 543 PKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGKKALKI 602 Query: 541 RKRRDVPLVYMKKDKN-------NLILMLPSGRSLVYR------------DVGNNRS--- 578 + + ++++ L + LPSGR + Y D G R+ Sbjct: 603 VRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKKRTSTR 662 Query: 579 ----YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 N TTRQ +YTYGGKLTENIVQA+ RDILA M AGY+IVL+VHDE++ Sbjct: 663 IKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVHDELIT 722 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E PDTD++ L LM P WAKG PL AEG RYRK Sbjct: 723 EVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763 >gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] Length = 666 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 231/709 (32%), Positives = 325/709 (45%), Gaps = 84/709 (11%) Query: 3 TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 L+ID ET S +D+ G+ KYAE D V+L A+ DD VEL D + Q Sbjct: 5 KLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVG 64 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 ++ LE+ + AHN++FE LK ++ I RW CT+V G P++L+ +GEAL Sbjct: 65 VRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEAL 124 Query: 117 KLSSQKME--EGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170 + K + GK LI FCK RN P H E W LF EYCK DV V RE Sbjct: 125 DMPEDKAKLRTGKALINYFCKPCKPTKTNGGRTRNLPKHASEKWELFREYCKRDVEVARE 184 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 I K L + W D +N RG VD AL I ++ ++ +T V Sbjct: 185 IDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDTIKRITG--V 242 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + R ++ WL + L + + +L S LT A V +++ K Sbjct: 243 DNPRSRAQVLDWLNDTLDEEITSLNAASVKALLES--DLTDDARAVLTAWQGLGKTSTKK 300 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 TL A D R+RG LQF GASRTGRW+G + P NLPR L+Q + Sbjct: 301 YETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVY--NLNQAGELVKAGH 358 Query: 351 TSDPDPL-----QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 D + L +S +R+C + EG K V+ D + IEARVLAW+AGE W L+ F+ Sbjct: 359 KKDIELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVLEEFKGD 418 Query: 406 EDLYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +Y T AR +N+ + + K R GK+ LALGYQG A ++M ++ Sbjct: 419 GKIYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMGAS------ 472 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ED F + +AWR + ++EL Sbjct: 473 ----------------------------------EDEFTDDELRGLVRAWRVANPCIAEL 498 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKK----DKNNLILMLPSGRSLVYRD---V 573 W + T+ + + +P+ + + NL + LPSGR L Y + V Sbjct: 499 WRYTEMMAKSTVSD--EFYSGTNPMIPISFKSTLNAVNGINLAIGLPSGRELYYHNPVIV 556 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 Y + T T+E TYGGKL ENIVQA++RD+LA+ + TK IVL Sbjct: 557 DGAIYYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGINAHIVLH 616 Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE+V E E +L + ++ PSWA+GLPLK E + S Y+K Sbjct: 617 VHDEVVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665 >gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1] Length = 698 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 238/695 (34%), Positives = 337/695 (48%), Gaps = 57/695 (8%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALE-----NTDVTIVAHN-SYFERTVLKACFNLD 87 A+ FDD PV++WDC + MP L AL N+ + +V HN S F+R ++K C+ D Sbjct: 8 AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR 145 IP+ I T++ A + LP +L A+ E L +S+ K + GK LI RF K R Sbjct: 68 IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127 Query: 146 -NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVA 202 H + W LF +Y D+T RE+F +L S E + LDQ INDRG+ VDVA Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 LA + V+ + +L +E + G ++ L L+ L + + ++T + Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDL 244 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L+ + A + R+ A+ +A K N L+ +SD R RG +Q+ GA RT R++G Sbjct: 245 LADDDLPD-DASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGK 303 Query: 323 VFPPQNLPRPSRSHEELDQIITHL-PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381 F PQNL R +ELD+ I+ L D ++ + VRSC+I G K VVAD Sbjct: 304 GFQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADY 363 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ---RAIGKVMELA 438 + +E R LAW+AGE+ L F G D+Y T + F + P + K++ R IGK EL Sbjct: 364 SNVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELG 423 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW------------EDAENFCRWMQ 486 LGY GG AF + A GL+L A + W ++A+ R + Sbjct: 424 LGYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGE 483 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 ++ I D + C+ +K+ WR+ H W ++ A I N R V Sbjct: 484 KDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGV 543 Query: 547 PLVYMKKDKN--------NLILMLPSGRSLVYRDVGNNRS------------------YL 580 + N L + LPSGR + Y VG + S Sbjct: 544 KFSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGE 603 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 N TRQ +YTY GKL EN QA+ RD+LA ++N GY IVL VHDEI+CETPD Sbjct: 604 NQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLP 663 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+N + L LM P WA+G PL AEG E KRY K Sbjct: 664 EYNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698 >gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1] gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1] Length = 993 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 222/611 (36%), Positives = 331/611 (54%), Gaps = 26/611 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK L++ Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 +++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL + + ++S K Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI+ CK R H E W+ F +Y D+ REI++ L + Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T QR + ++ + P ++ + R+++ ++ K L+++ Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPALRELLSVRLQSCTTSTSKYKALLKS 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PD 355 +++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YAR+FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 423 LAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 P +A + + E + + + T C+ +K+ WR H + W ++ A +Q Sbjct: 483 PPGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---RSYLNTT--TR 585 I++ ++ V ++DK+ L + LPSGRSL Y +Y+ T +R Sbjct: 542 AIQSPGIAFKCRKLSV-----RRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSR 596 Query: 586 QLTREYTYGGK 596 + R TYGGK Sbjct: 597 KWERLKTYGGK 607 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 54/78 (69%) Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI QA +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N W Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974 Query: 658 AKGLPLKAEGYESKRYRK 675 A LPL A G+E+ RYRK Sbjct: 975 AWDLPLSANGFETYRYRK 992 >gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2] gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2] gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 993 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 222/611 (36%), Positives = 331/611 (54%), Gaps = 26/611 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK ++ Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 +++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL + + ++S K Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI+ CK R H E W+ F +Y D+ REI++ L + Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T QR + ++ + P ++ + R+++ ++ K L+++ Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PD 355 +++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YAR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + Sbjct: 423 LAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 P +A ++ + E + + + I C+ +K+ WR H + W ++ A +Q Sbjct: 483 PPGVKREATSWYQKSVETDKTYGLSEK-IFVNCDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---RSYLNTT--TR 585 I++ ++ V ++DK L + LPSGRSL Y +Y+ T +R Sbjct: 542 AIQSPGIAFKCRKLSV-----RRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSR 596 Query: 586 QLTREYTYGGK 596 + R TYGGK Sbjct: 597 KWERLKTYGGK 607 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 54/78 (69%) Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI QA +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N W Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974 Query: 658 AKGLPLKAEGYESKRYRK 675 A LPL A G+E+ RYRK Sbjct: 975 AWDLPLSANGFETYRYRK 992 >gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407] Length = 598 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 223/589 (37%), Positives = 323/589 (54%), Gaps = 24/589 (4%) Query: 104 GLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEY 160 G AL + E L + K +EGK LI FCK R H E WR F Y Sbjct: 16 GSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAY 75 Query: 161 CKGDVTVTREIFKRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 D+ RE++KRL + + E LW+ DQ INDRG C+DV LA VD E+ +L Sbjct: 76 AGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRL 135 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + +T G V ++ + L + G+ L D+ +T +R ++ L ++ Sbjct: 136 AKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLA 194 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R++AS ++ K L++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E+ Sbjct: 195 IRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQ 254 Query: 339 LDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +D+ I L + +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+ Sbjct: 255 IDEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEE 314 Query: 397 WKLKAFET-----GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 WKL AF G DLY YA++F++AP V K R IGKVMEL LGY GG AF Sbjct: 315 WKLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITF 374 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A GL+L+ A+ N + +A+++ + + + + + AC+ +K+ WR Sbjct: 375 ALVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSER-VFIACDSLKRLWR 433 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + H + W EL I + K + +++D L + LPSGR++ Y Sbjct: 434 RAHPATCDFWYELECTVRTAIATPQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYP 488 Query: 572 DV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 N +Y+ N+ +R+ R TYGGKL EN+ QA +RD+LA M AGY IVL Sbjct: 489 SPVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVL 548 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 TVHDE++ E+PDT++FN L L+++NP WA +PL A G+E+ YRK Sbjct: 549 TVHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597 >gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358] Length = 653 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 223/696 (32%), Positives = 316/696 (45%), Gaps = 68/696 (9%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 L ID ET S +DL CG+ +YA + LF++ F D PV D V+P + Sbjct: 3 KPLHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKVLR 62 Query: 60 ALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + VAHN+ FER + + W CT+V GLP +L +G+AL L Sbjct: 63 ALRDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKALGL 122 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK +EGK LI F CK +N P H E W +G+Y + DV V I + Sbjct: 123 DVQKDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETGISDK 182 Query: 175 LE---PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L L + E + DQ IND G VDV ++ D + + +L LT V Sbjct: 183 LAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG--VE 240 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS--NKKLTPQAIQVFNNRMRASRSAVL 289 S +++LK W G +E L + C+ L+ + P+ ++ A +AV Sbjct: 241 SVTKVQQLKAW-AAAQGYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGGAAVA 299 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 K + ++ + DG ++G L+F GA T RW+G QNLPR ++L+ + Sbjct: 300 KYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQIVAKG 359 Query: 350 IT----SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 T +P+ +I+ VR+ + + V+D + IEARV+AW AGE W LKAFE G Sbjct: 360 KTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKAFEDG 419 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED+YV T ++ ++V + R GK LALGYQGGA A M Sbjct: 420 EDIYVATASKMYHVTGEEAEA-MRQKGKQATLALGYQGGANALIVMG------------- 465 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 A+ + + WR+ + + LW+ + Sbjct: 466 ---------------------------ALRAGIPEEELPELVQLWRKANPNIVNLWHTVD 498 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYLNT 582 +A I NG A ++ K D++ L + LPSGR L Y D N SYL Sbjct: 499 KAARMAINNGGAKRYVLADGKLVISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKISYLKG 558 Query: 583 TTRQLTR--EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 +R TYGGKLTEN+VQA SRD+L +M AG V VHDE + P+ Sbjct: 559 VRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIVPEGT 618 Query: 641 EFNASMLYHLMTSN-PSWAKGLPLKAEGYESKRYRK 675 + + +LMTS P WA GLPL +EG K YRK Sbjct: 619 KI--EEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652 >gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] Length = 704 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 234/702 (33%), Positives = 341/702 (48%), Gaps = 33/702 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L++D ET S DL + G +YAE +LFA+ D P +WDC + M L A+++ Sbjct: 5 LWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTAEE-MHDELYHAMDD 63 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVLARSNGLPSALKAVGEALKLSS 120 D AHN++F+RT+ +P RW C++ +A S+ LP L + LK+ + Sbjct: 64 ADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKVPA 123 Query: 121 Q--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K+ +GK+L+ F + + R + H W F +Y D+T RE +R+ Sbjct: 124 DMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRMPA 183 Query: 178 LS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + + W+LDQ IN RG+ VD AL + E+ ++ L+ G + Sbjct: 184 WNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQ-FTPGQ 242 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 EK + +L G L++ T Q +L + L ++ + +++++ K L Sbjct: 243 REKFRVYLGQRLGYELDNTQAGTFQVML-RDPGLPADVREMIELAIASNKTSTAKYAALD 301 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR-SHEELDQIITHLPTS--ITS 352 A++ DGR RG LQF GASRT RW+G +F PQNLP S E ++ I HL Sbjct: 302 PAVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHALF 361 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GED 407 + + + + +R CV+A+ GKKLVVADL+ IE RVLAW+A E+WKLKAF G D Sbjct: 362 FDNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGPD 421 Query: 408 LYVTTYARSFNVAPAQVTKDQRA-IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 LY T P V K R GKV +LA GYQGG +Q A + GL + F + Sbjct: 422 LYNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDTI 481 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + A E D A E K AWR +H S+ W L Sbjct: 482 QQMVPAQHVAKAWENLASWGHPQLESLEIDEIEWVASETCKLAWRARHPATSKFWYALGG 541 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG------------ 574 A + I N ++ + + L++ LPSGR L Y + Sbjct: 542 AAKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRDETIAY 601 Query: 575 -NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 S TTRQ R +T+GGK+T N Q ++RDILA M A GY VL+VHDE + Sbjct: 602 WGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSVHDEAL 661 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E PDTD+F A+ L ++ +NP+WA LPL A G+E+ RY+K Sbjct: 662 TEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703 >gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 560 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 183/612 (29%), Positives = 281/612 (45%), Gaps = 78/612 (12%) Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHEC 141 L + W CT++ + + GLP +L++VG L L QK+ EGK LI FC Sbjct: 5 GLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGLDKQKLTEGKNLIKYFCLPCNPTKVNG 64 Query: 142 LYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYC 198 RNK H E W LF Y K DV V I ++L P+ + +YLDQTINDRG Sbjct: 65 GRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQTINDRGIE 124 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 +D + ++ +T L EL+ +T + + + ++++WL E GL +E L + Sbjct: 125 IDSLFVESAIKLDQEVKTHLMSELKHVTG--LENPNSVLQMRSWL-KEHGLEMESLGKKE 181 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 + L + K + +V R + ++S+V K + A D R RG +F GA+RTGR Sbjct: 182 VAKELKTVGK---ELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGR 238 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKK 375 ++G + QNLP+ + + + D +S +R+ I G K Sbjct: 239 FAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGFK 298 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGK 433 +VAD + IEARVLAW+AGE+W+++ F G+D+Y ++ ++ F+V + V R GK Sbjct: 299 FIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGK 358 Query: 434 VMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 + ELALGY G A + M + GL LV Sbjct: 359 IAELALGYGGSVGALKAMGALDMGLTEEELQPLVDA------------------------ 394 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 WR+ + V+ LW ++ +A +Q + ++ + Sbjct: 395 -----------------WRKSNPMVTTLWWDVDRAVKQCVHEHISV------RTHNIVFT 431 Query: 553 KDKNNLILMLPSGRSLVYRDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQ 603 LI+ LPS R L Y G + +Y +T++ R +YG K ENI Q Sbjct: 432 YKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQ 491 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPL 663 A++RDIL M + Y IV VHDE + ET + + LM P WA+GL L Sbjct: 492 AIARDILLYAMQTLKE--YRIVAHVHDEAIIETDKN--VSVQSVCELMGRTPPWAEGLVL 547 Query: 664 KAEGYESKRYRK 675 +A+GYE + Y+K Sbjct: 548 RADGYECEFYKK 559 >gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] Length = 681 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 229/688 (33%), Positives = 343/688 (49%), Gaps = 51/688 (7%) Query: 31 ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLD 87 +++ + DD PV WD MP L EA++ D + F+R VLK Sbjct: 1 MIWTWAIDDGPVGTWDVTTGAPMPVELDEAIDAADEYWWQNGGMFDRVVLKHAAPEIYAR 60 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR 145 +P H+W T+V A ++GLP L + E + + K +EG +LI FCK R Sbjct: 61 MPEHKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRR 120 Query: 146 -NKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQTINDRGYCVD 200 + H E W F Y D+T R + K + P + E LW+ DQ IN RG +D Sbjct: 121 ATRETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMD 180 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 V LA + +D + +L LT G V+ + +KL L E + L D+ ++T + Sbjct: 181 VELAEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLE 240 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 R + ++ L ++ R+ A+ ++ K TL+ +++DGRLRG +QF GA RTGR + Sbjct: 241 RRI-NDPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVA 299 Query: 321 GCVFPPQNLPRPS------------------RSHEELDQIITHLPTSITSDPDPLQIISD 362 +F P N+PRP + EL + + + + ++ Sbjct: 300 HRLFQPGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTAN 359 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTYARSF 417 VR ++A +GK+L V+DL+ IE R AW+AGE+WKL+AF G DLY YAR+F Sbjct: 360 VVRGTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAF 419 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT---NSAPEE 474 VA V K R +GKVMELAL Y+GG AF T ++L++ V PE Sbjct: 420 GVAVEAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEI 479 Query: 475 WEDAENFCRWMQENHPEHAIE-DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 +A W + + D+FI AC+ +K+ WR+ H + S W EL A I Sbjct: 480 VREARGMWEWAVKKRRTLGLPQDVFI--ACDILKRLWRRAHPQTSSYWPELRDAAILAIS 537 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYL--NTTTRQL 587 + + +R V +++D L + LPS R L Y SY+ N TR+ Sbjct: 538 SPGKTVHARR-----VILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEISYMGVNQYTRKW 592 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647 R TYGGK+ EN+ QAV+RD+L AGYDIVL++HDE++ E PD D+++A L Sbjct: 593 QRTKTYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADEL 652 Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L+ + P+WA+G+PL A G+ + RY+K Sbjct: 653 SSLIATAPAWAEGMPLAAAGFSAYRYKK 680 >gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2] Length = 579 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 213/581 (36%), Positives = 318/581 (54%), Gaps = 21/581 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP LK ++ Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 +++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL + + ++S K Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 --MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +EGK LI+ CK R H E W+ F +Y D+ REI++ L + Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T QR + ++ + P ++ + R+++ ++ K L+++ Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PD 355 +++DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YAR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + Sbjct: 423 LAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 P +A ++ + E + + + T C+ +K+ WR H + W ++ A +Q Sbjct: 483 PPGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 I++ ++ V ++DK L + LPSGRSL Y Sbjct: 542 AIQSPGIAFKCRKLSV-----RRDKGWLRICLPSGRSLCYP 577 >gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1] Length = 645 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 196/682 (28%), Positives = 305/682 (44%), Gaps = 80/682 (11%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 A+ + V+ D +P L+EALE+ DV A N+ FER + + + P W Sbjct: 3 AWSINGGAVQHVDLHRGKKLPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAW 62 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKG---ETHECLYDRNKP 148 CT+ LA G L AVG + L K++ EGK LI F K RN+ Sbjct: 63 RCTMALAYMLGFAGDLLAVGTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEA 122 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 E W F +Y DV I RL P+ E +++ LDQ IND G +D A++ Sbjct: 123 TDPEDWWHFCKYNIRDVETELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYS 182 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL--S 264 + + + ++ +E+ +T +++ +L WL E G DL T +V+ + Sbjct: 183 ALALAEARKPQIIEEMADITG--LNNPNSPAQLTPWL-KERGYPFSDLRSDTVNKVIREA 239 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P+AI+V R+ ++++++ K T+++A DGR R +LQF GASRT RW+G Sbjct: 240 DENGVDPEAIRVLQMRLNSAKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRI 299 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPD--------PLQIISDCVRSCVIASEGKKL 376 QNLPR + E++ + D D P+ + C+RS I + G K Sbjct: 300 QTQNLPRTPKLIEDVTDLSIVNKMIHQRDLDALTLYVGEPMDALVGCIRSAFIPTPGHKF 359 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 +VADL+ IE+ V+ W+ +W + DLY + A ++ + TK R+ K Sbjct: 360 IVADLSSIESVVIGWLTDCKWFMNTLAAKHDLYRSFAAHWLHLPYEE-TKPHRSKAKPAT 418 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L GY+ G + TGL W AEN M + E ++ Sbjct: 419 LGAGYRLGGGHMDENGKKTGL-----------------WGYAENMGVHMTQKEAEESV-- 459 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +A+R + W +L A + I +A++ + ++ K Sbjct: 460 -----------QAFRDLCPEIVRAWYDLENAVFKVIRTRQAVVW------GCLIIEYTKP 502 Query: 557 NLILMLPSGRSLVY---------------RDVGNNRSYLN--------TTTRQLTREYTY 593 L + LPSGR + Y G + N + + + Y++ Sbjct: 503 FLTIRLPSGRKMYYFRPRLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSH 562 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653 GGKL ENIVQA++RD+LAEG+ A + G+ IV+ +HDEIV E P+ L M + Sbjct: 563 GGKLVENIVQALARDVLAEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAA 622 Query: 654 NPSWAKGLPLKAEGYESKRYRK 675 WA+GLPL A G+E YRK Sbjct: 623 ELPWAEGLPLGAAGWEGYFYRK 644 >gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23] gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23] Length = 545 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 180/596 (30%), Positives = 271/596 (45%), Gaps = 69/596 (11%) Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-E 152 +V GLP++L + +AL+L+ +K EGK LI FC K RN P H E Sbjct: 1 MVHGTLLGLPASLDMMSKALRLAQEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASE 60 Query: 153 AWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 W F EYC+ DV V R I K++ P EQ W LDQ I D+G +DV L Sbjct: 61 KWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIAC 120 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 + + L ++ + LT + + +++LK WL G + L + + +L+ + L Sbjct: 121 QERYQASLSKKAKGLTG--LENPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLAD-EDLD 176 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++ R S++++ K + A DGR+RG LQF GA+RTGRW+G + QNLP Sbjct: 177 EDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLP 236 Query: 331 RPSRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387 R + + + ++S +R+ IA +G + D + IEAR Sbjct: 237 RNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEAR 296 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 V+AW+AGEQW+L F + +Y + ++ F++ +V K+ R GKV ELALGY GG A Sbjct: 297 VIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNA 356 Query: 448 FQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 M + GL N + Sbjct: 357 LIAMGALEMGLKENELQ-----------------------------------------GI 375 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 AWR+ ++ LW + + + I RK + + + L + LPSGR Sbjct: 376 VDAWRKASPAITSLWRGVEKHAKLAIST------RKSQKYKGLTFYYEAGILFIKLPSGR 429 Query: 567 SLVYR-------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 +L Y G Y T + ++YTYGGKL ENIVQA++RD LA + Sbjct: 430 NLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIED 489 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 G D V+ VHDE + E ++ E + L ++ SWA GLPL+ +G+ S Y K Sbjct: 490 TGIDTVMHVHDEAITEVQES-ESSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544 >gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 591 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 208/560 (37%), Positives = 302/560 (53%), Gaps = 16/560 (2%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ D PV +WD +P L++A+ + Sbjct: 5 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAIAD 63 Query: 64 TDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 D + HNS+F+RTVL+ L + RW T+V A ++GLP AL A+ E L + Sbjct: 64 PDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQDK 123 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI FCK R H E WR F Y D+ RE+ KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPKWN 183 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 K E LW+ DQ INDRG C+DV LA + VD E+ +L + + +T G V ++ + Sbjct: 184 YKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQRD 243 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K +L++ Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRMAD-PDLPSAVKELLAIRLQASTTSTSKYKSLMKG 302 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRPS +++D+ I L + Sbjct: 303 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFDN 362 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C++A EGKKLVV+DL+ IE R LAW+AGEQWKL AF G DLY Sbjct: 363 IMELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLYK 422 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YAR+FN++P V K QR IGKVMEL LG+ GG AF A GL+L+ A+ N Sbjct: 423 LAYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNI 482 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+N+ + + + + + AC+ +K+ WR+ H + W EL + Sbjct: 483 PRDVIREAKNWYDESVKRKATYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRA 541 Query: 531 TIENGKAIIARKRRDVPLVY 550 I + + P + Sbjct: 542 AIATPTKDAVLRLSESPPRW 561 >gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] Length = 538 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 196/592 (33%), Positives = 265/592 (44%), Gaps = 78/592 (13%) Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPNHRE-AWRLFGEYCK 162 +L AVG AL L QK GK LI +FC T RN P+ +W F +Y + Sbjct: 1 MSLDAVGAALDLDVQKDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYNQ 60 Query: 163 GDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 DV V I RL P+ E + + LDQ IND G +D LA + D R Sbjct: 61 RDVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATLA 120 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 LT + + +LK WL G + L + + L S T + +V R Sbjct: 121 RARELTG--LENPNSPIQLKEWL-TTHGCEMSSLAKADVEAALES---ATGKVKEVLELR 174 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++S+V K + +DGR RG +QF GA RTGR++G + QNLPR + Sbjct: 175 GDLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQA 234 Query: 341 QIIT------HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + +T L S PD L S +R+ I S G + +VAD + IEARV+AW+AG Sbjct: 235 RTLTRQRNLDALELLYDSVPDTL---SQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAG 291 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMA 452 E L AF G+DLY T +R F V + + + R GK+ LA GY G A + M Sbjct: 292 ETSTLAAFRDGKDLYCETASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG 351 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 A+ + + AWR Sbjct: 352 ----------------------------------------ALRMGLAEHELKPIVDAWRA 371 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-- 570 + + LW ++ QA I +A+ R R + L + LPSGR L Y Sbjct: 372 ANPNIVRLWADVEQAALDAITTRQAVRLRNLR------FTAESGILFITLPSGRRLAYVK 425 Query: 571 RDVGNNR------SYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 +G NR +Y TT R+ R TYGGKL ENIVQAV+RD+L M +AG+ Sbjct: 426 PQLGENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHK 485 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV+ VHDEIV + P+ F + LMT+ P WA GLPL A+GYE YRK Sbjct: 486 IVMHVHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537 >gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] Length = 601 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 214/661 (32%), Positives = 316/661 (47%), Gaps = 78/661 (11%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIPIH 91 A+ D LW +P+ + ++ TI A NS+FE + + PI Sbjct: 1 MAYAIGDEDPILWLP--GDDLPEFVTN---PSEFTIYAWNSFFEWCIWHHVQEWSNAPIF 55 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSS--QKMEEGKELIARFCKGETHECLYDRNKPN 149 W T LA +P AL A +AL L QK + GK LI R K + + D Sbjct: 56 LWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSKPNRGKRIQD----- 110 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 + F EYC+ DV V R + RL PLS++E+++W LDQTIN RG +D Sbjct: 111 -ADLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVENALL 169 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 I+D KL+QE+ LT +++ +++ ++ E G L + + VL + L Sbjct: 170 IIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLED-ETL 228 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P A ++ R + +++ K L + + D R G L + GA+ TGRWSG F PQNL Sbjct: 229 PPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQNL 287 Query: 330 PRPSRSHEE-----LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384 PRPS + + L I DP ++ +S +R + A EGK+L+V D + I Sbjct: 288 PRPSFKDTDNCIRLFKHADSELLELIYDDP--MEALSSSLRGMICAPEGKRLIVVDYSQI 345 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 EARVL W+AG++ L G ++Y T ++ + V P +V ++QR IGKV LALGYQGG Sbjct: 346 EARVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQGG 405 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 AKAFQ MA G+ ++T + Sbjct: 406 AKAFQGMAEVYGVEIDT---------------------------------------DLAD 426 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 +K WR + ++ + W + +A + + K ++ + + N L LPS Sbjct: 427 EIKVDWRVANRKIVKFWWGVEKAALNAVTHP-----GKTFEIRAIKFRFTDNYLFCRLPS 481 Query: 565 GRSLVYRDVGNNRS----------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 GR L Y + N+ TR+ R+ TYGGKL ENI QAV+RD++AE M Sbjct: 482 GRLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMAEAM 541 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + AGY++VL+VHDE++ E D D + LM P WAKGLP+ +EG+E RYR Sbjct: 542 LRVENAGYEVVLSVHDELIAEAND-DFGSVEEFEQLMCELPVWAKGLPVTSEGFECLRYR 600 Query: 675 K 675 K Sbjct: 601 K 601 >gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 150/458 (32%), Positives = 231/458 (50%), Gaps = 25/458 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +L + G +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +AL++ + A N+ FER L + W C+ V + + GLP +L+ VG L L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E E +++DQ INDRG +D L + + + Q + LT +++ Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTG--LAN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ + L + + ++L + T QV R S+S+V K Sbjct: 239 PNSPLQLKNWLH-QQGVETDSLAKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII------THL 346 + +AM DG + G LQF GA+RTGRW+G + QNLPR S E + + T L Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+G VAD + +EARV+AW++GE+W+ AF E Sbjct: 355 AMLYESVPD---VLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQ 442 D+Y + ++ F V + + + R GK+ ELALGY Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449 >gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 971 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 150/478 (31%), Positives = 228/478 (47%), Gaps = 39/478 (8%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M TL +D ET S ++L KCG+ KYAE ++LF + D V++ D +P+ + Sbjct: 1 MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACF--------------------NLDIPIHRWICTLV 98 +AL + VT A N+ FER L + W C++V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154 + GLP +L+ VG L L +QKM+EG+ELI F CK RN P H + W Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALDKW 180 Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 F Y K DV V I +RL+ P+ + E ++LDQ INDRG +D+ LA + Sbjct: 181 NQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAMDA 240 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 R L L+ T + + + ++ WL + GL + L + + +L + ++ Sbjct: 241 KSRESLMAALKEKTG--LENPNSVLQMLGWL-EDHGLKTDSLGKKQVKELLKTAQEP--- 294 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + ++S+V K + A+ DGR RG QF GA+RTGR +G QNLP+ Sbjct: 295 LRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQN 354 Query: 333 SRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 + + D ++S +R+ + G K VV+D + IEARV+ Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARVI 414 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGA 445 +WMAGE+WK AF G+D+Y +T ++ F V + V + R GK+ ELA +G Sbjct: 415 SWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACIAEGQL 472 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 19/193 (9%) Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 A++ + ++WR + + + W ++ A + I+ + V + Sbjct: 788 GALDMGIPEEELGSLVQSWRSANPHIVDFWWQVDGAVKTAIKQRIPVW------VNNIRF 841 Query: 552 KKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIV 602 L + LPSGR L Y +G N+ + T ++ R +YG K ENIV Sbjct: 842 VCQSGMLFIELPSGRQLSYVKPRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIV 901 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662 Q +RDIL M IV VHDE++ E + E + + M+ P WA+GL Sbjct: 902 QGTARDILCYAMQTL--RCCAIVGHVHDELIIEC--SKEVSVDAICEQMSRTPPWAEGLV 957 Query: 663 LKAEGYESKRYRK 675 L+A+GYE Y+K Sbjct: 958 LRADGYECAFYQK 970 >gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 149/458 (32%), Positives = 235/458 (51%), Gaps = 25/458 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 E L+N ++ A N+ FER L + W C+ V + + GLP +L+ +G L L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174 QK+ GKEL+ F CK RN P H + W+ F +Y + DV V EI ++ Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 LE P+ E E +++DQ INDRG +D L + + +V + Q + LT +++ Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--LAN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + G+ L++ + ++L + T QV R S+S+V K Sbjct: 239 PNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHL 346 + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + + L Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ ++F E Sbjct: 355 AMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNE 411 Query: 407 DLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQ 442 D+Y + ++ F V + + + R GK+ ELALGY Sbjct: 412 DIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449 >gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul] gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul] Length = 693 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 201/726 (27%), Positives = 318/726 (43%), Gaps = 96/726 (13%) Query: 6 IDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 +D+E+RS DL CG+ Y+ E +++ ++ F+ V+ W+ D P ++EALE+ Sbjct: 7 LDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWEI-RDGKFPAEVREALED 65 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +V A N+ FER + + ++ P W CT+ A L+ VG L L K+ Sbjct: 66 PNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQDKV 125 Query: 124 E--EGKELIARFCKG---ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + GK+LI F K + + W F Y + DV I + L P Sbjct: 126 KLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAIDEWLAPY 185 Query: 179 S--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 +E EL+ LDQ INDRG VD+ ++ + D + +L +++ ++T + + Sbjct: 186 PTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITG--LENPNSP 243 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKK---LTPQAIQVFNNRMRASRSAVLKLNT 293 ++LK W+ G +DL + T ++VL+ +K LT + +V RM+++R++V K Sbjct: 244 QQLKPWVKAR-GYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVGKYKK 302 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ------IITHLP 347 V + RLR LQF GA RT RW+G NL R ++ E +T+ Sbjct: 303 FVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTVTNAI 362 Query: 348 TSITSDP------DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + D +P+ ++ CVRS + A EG + V DL+ IE V+AW+A Q L Sbjct: 363 RAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPLLNV 422 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G Y R + V +VT R + K L GY+ G TGL Sbjct: 423 FREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL---- 478 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 W AEN M +++ +R+ + V +LW Sbjct: 479 -------------WGYAENMGIDMSRQEAHDSVK-------------MYREAYPEVPQLW 512 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR---------- 571 +L A +TI+ R V + L+ +LPSGR + Y Sbjct: 513 KDLEAAIIRTIKTKAVTRVR------YVSFEIVGEFLVAILPSGRRMYYHRPRIEKKKFQ 566 Query: 572 ---------------------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 +G + N ++ R+ ++GGK+TEN+VQA++R+IL Sbjct: 567 KKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIAREIL 626 Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYE 669 G+ NA K G +IVL VHDEIV D +L MT+ W + +P+ A G+ Sbjct: 627 KYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGAAGWS 686 Query: 670 SKRYRK 675 + YRK Sbjct: 687 AAFYRK 692 >gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterococcus sp. 7L76] Length = 545 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 140/436 (32%), Positives = 219/436 (50%), Gaps = 18/436 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L +D ET S +DL+KCG+ KY+E D ++LFA+ D PVE+ D D +P + Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116 +L + V A N+ FER L LD + W CT+V + GLP +L VG L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 KLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 L+ QK+ EGK+LI FC RN P+H W F Y DV V I Sbjct: 121 GLNKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIAIQ 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +L P+ + ++LDQ INDRG +D Q+ ++ + L+Q+L+ LT + Sbjct: 181 GKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + +++ WL L+ GL E L + +L + + QV R + ++S+V K Sbjct: 239 ENPNSVLQMRGWL-LDHGLETESLGKKAVDELLE--QPIDENLKQVLVLRQQLAKSSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347 + SD R RG QF GA+RTGR++G QNLP+ S + + Sbjct: 296 YQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSLVKQSNFE 355 Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + ++S+ +R+ + EG K +V+D + IEARV+AW++GE+W+ + F+ G D Sbjct: 356 MLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGD 415 Query: 408 LYVTTYARSFNVAPAQ 423 +Y + ++ F V + Sbjct: 416 IYCASASQMFGVPVEK 431 >gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3] Length = 502 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 201/507 (39%), Positives = 287/507 (56%), Gaps = 19/507 (3%) Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + G+ L D+ +T QR + ++ + P ++ + R+++ ++ K L++++++ Sbjct: 62 QHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSA 120 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358 DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N P Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPG 300 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 +A + + E + + + T C+ +K+ WR H + W ++ A +Q I+ Sbjct: 301 VKREAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---RSYLNTT--TRQLT 588 + ++ V ++DK L + LPSGRSL Y +Y+ T +R+ Sbjct: 360 SPGIAFKCRKLSV-----RRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWE 414 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 R TYGGK+ ENI Q+ +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L Sbjct: 415 RLKTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLS 474 Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYRK 675 L++ N WA LPL A G+E+ RYRK Sbjct: 475 KLLSFNSDWAWDLPLSANGFETYRYRK 501 >gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82] Length = 975 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 178/451 (39%), Positives = 254/451 (56%), Gaps = 15/451 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 6 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R +AS ++ K L++ Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRQQASTTSTSKYKALMKG 303 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 363 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +++ S +R C+IA GKKLVV+DL+ IE R+LAW+AGE+WKL AF G DLY Sbjct: 364 IMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYK 423 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 YA+++ + +VTKDQR IGKV+ELA Sbjct: 424 LAYAKAYGIEVERVTKDQRQIGKVLELACIA 454 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 16/266 (6%) Query: 420 APAQVTKDQRAIGKV-----MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 A R K + GY GG AF A L+L+ A+ N + Sbjct: 715 DIAHAGPRNRFTIKTDSGHLIVHNCGYGGGVSAFITFALVYSLDLDELANAALPNIPRDV 774 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 +A+++ + + + + + AC+ +K+ WR+ H + W EL + I Sbjct: 775 IREAKSWYYESVKRKSTYGLSER-VFIACDSLKRLWRRAHPATCDFWYELERTVRTAIAT 833 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTR 589 + K + +++D L + LPSGR++ Y N +Y+ N+ +R+ R Sbjct: 834 PQ-----KTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQR 888 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 TYGGKL EN+ QA +RD+LA M AGY IVLTVHDEI+ E PD+ +++A + Sbjct: 889 LKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQ 948 Query: 650 LMTSNPSWAKGLPLKAEGYESKRYRK 675 L+ + P WA +PL A G+ES RYRK Sbjct: 949 LLATVPDWATSIPLNAGGFESYRYRK 974 >gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 470 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 155/526 (29%), Positives = 242/526 (46%), Gaps = 76/526 (14%) Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 EI ++LE P+ E E +++DQ INDRG +D L + + +V + Q + LT Sbjct: 1 MEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT 60 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 +++ +LK WL + G + L++ + ++L + T + Q+ R S+S Sbjct: 61 G--LANPNSPLQLKDWL-QQQGAKTDSLSKASVAQLLQT---TTGKVHQILALRQLLSKS 114 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI---- 342 +V K + +AM DGR+ G LQF GA+RTGRW+G + QNLPR S E + Sbjct: 115 SVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLVKQ 174 Query: 343 --ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +T L S PD ++S +R+ I S+ VAD + +EARV+AW++ E+W+ + Sbjct: 175 GNVTALAMLYDSVPD---VLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQE 231 Query: 401 AFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF ED+Y + ++ F V + + + R GK+ ELALGY G A + M Sbjct: 232 AFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG------ 285 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + + + + WR + Sbjct: 286 ----------------------------------ATKLVLTDDELPPLVQMWRNASPHIV 311 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 + W ++ +A ++ I K + + + +Y + L L SGR L Y +G N Sbjct: 312 QFWWDVDKAAKECI---KTHLPQTTHGMKFIY---RSGCMFLRLRSGRYLCYPKPKIGTN 365 Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R + T ++ R TYG KL ENIVQA SRD+LAE M +V+ +H Sbjct: 366 RFGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIH 425 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE V + P + + LMT P WA GL L A G+ S Y+K Sbjct: 426 DEAVIDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469 >gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 567 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 222/573 (38%), Positives = 289/573 (50%), Gaps = 60/573 (10%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F EY + DV R++ KRL S E LW+LDQTINDRG VD LA V Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L E+LT G V ++ + L L E G+ L D+ + T +R L L Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDD-PLLPE 121 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLPR Sbjct: 122 TVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181 Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P+ S + I + D + + S +RSC+IA KKLVVADL+ IE RVL Sbjct: 182 PTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVL 241 Query: 390 AWMAGEQWKLKAF----------------------------------------ETGEDLY 409 AW+AGE KL AF G+D+Y Sbjct: 242 AWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIY 301 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 YA SF +AP VTK+QR IGKV ELALGY GG AF A+ ++L A + Sbjct: 302 KRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAA 359 Query: 470 SAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 P ++A +W + N P + D AC+ K+AWR H ++ W L A Sbjct: 360 LPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAA 418 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT-- 582 I + + + ++ + L L LPSGR L Y D SY+ T Sbjct: 419 TDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHP 473 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDE++ E D F Sbjct: 474 ITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 NA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] Length = 567 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 223/573 (38%), Positives = 288/573 (50%), Gaps = 60/573 (10%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F EY + DV R++ KRL S E LW+LDQTINDRG VD LA V Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L E+LT G V ++ + L L E G+ L D+ + T +R L L Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDD-PLLPE 121 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLPR Sbjct: 122 TVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181 Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P+ S + I + D + + S +RSC+IA KKLVVADL+ IE RVL Sbjct: 182 PTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVL 241 Query: 390 AWMAGEQWKLKAFE----------------------------------------TGEDLY 409 AW+AGE KL AF G+D+Y Sbjct: 242 AWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIY 301 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 YA SF +AP VTK QR IGKV ELALGY GG AF A+ ++L A + Sbjct: 302 KRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAA 359 Query: 470 SAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 P ++A +W + N P + D AC+ K+AWR H ++ W L A Sbjct: 360 LPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAA 418 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT-- 582 I + + + M+ + L + LPSGR L Y D SY+ T Sbjct: 419 TDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDEI+ E D F Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAF 533 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 NA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] Length = 419 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 130/404 (32%), Positives = 202/404 (50%), Gaps = 17/404 (4%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59 TL ID ET S +DL KCG+ YA+ ++LFA+ FDD ++ D + + +K Sbjct: 7 KTLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKN 66 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 AL + + A N+ FERT L + + W+CT V + LP +L+ VG L LS Sbjct: 67 ALSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLS 126 Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175 QK++EGK+LI F CK RN P H E W+ F YC DV V + I ++L Sbjct: 127 EQKLKEGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQKL 186 Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 P+ E + LDQ INDRG VD L + + + +T + + Sbjct: 187 HKFPIPESEMAFYRLDQEINDRGVLVDRELVEQSITCDLLHKDIVTNRAYEVTG--LENP 244 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + +LK WL G+ ++ L++ ++ + ++ R+ ++++V K Sbjct: 245 NSVSQLKGWLSER-GVEIDSLSKGAVAELIEDADG---EVLEALKLRLLMAKTSVKKYEA 300 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TSI 350 + ++ SDGR+ G LQF GA+RTGRW+G + QNLP+ S EL + + Sbjct: 301 IERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEELE 360 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 ++S+ +R+ I EG + +VAD + IEARVLAW++G Sbjct: 361 LFYESTPNVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404 >gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 567 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 222/573 (38%), Positives = 288/573 (50%), Gaps = 60/573 (10%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F EY + DV R++ KRL S E LW+LDQTINDRG VD LA V Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L E+LT G V ++ + L L E G+ L D+ + T +R L L Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDD-PLLPE 121 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLPR Sbjct: 122 TVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181 Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P+ S + I + D + + S +RSC+IA KKLVVADL+ IE RVL Sbjct: 182 PTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVL 241 Query: 390 AWMAGEQWKLKAFE----------------------------------------TGEDLY 409 AW+AGE KL AF G+D+Y Sbjct: 242 AWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIY 301 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 YA SF +AP VTK QR IGKV ELALGY GG AF A+ ++L A + Sbjct: 302 KRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAA 359 Query: 470 SAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 P ++A +W + N P + D AC+ K+AWR H ++ W L A Sbjct: 360 LPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAA 418 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT-- 582 I + + + M+ + L + LPSGR L Y D SY+ T Sbjct: 419 TDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642 TR+ TR TYGGKL ENI QAVSRD+LA M AGY IVLTVHDE++ E D F Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533 Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 NA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3] gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3] Length = 656 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 192/715 (26%), Positives = 291/715 (40%), Gaps = 104/715 (14%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLK 58 LF+DFET S DLT+ G+ +Y D + F F +LW+ +P+V+ Sbjct: 4 RLLFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEV--GQRVPEVIT 61 Query: 59 EALENTDVTIVAHNSYFER----TVLKACFNLDIPIH----RWICTLVLARSNGLPSALK 110 + VAHN+ F+ TVL+ + C+ AR NGLP +L Sbjct: 62 RHV-RAGHLFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLA 120 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 EAL L QK EG + + D +H E + +Y D Sbjct: 121 GACEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVG 174 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ PL ++EQ + +D IN RG VDV A + + +LD E+ LT G V Sbjct: 175 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGV 234 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +EK+KT+ G ++D T ++ +++ L Q+ R+ ASR+ K Sbjct: 235 LAVSEVEKIKTY-AATLGEDMDDAGRETLKK-IAARDNLPDSLRQLIELRLDASRAP--K 290 Query: 291 LNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN--LPRPSRSHEELDQIITH 345 + + + GRL+ + + GA T R +G N PRP + + + I+ Sbjct: 291 KSAAILRAHVGGRLQHSTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDA 349 Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWK 398 + S P+ L ++D R A G LV ADL+GIEAR W+AG+ Sbjct: 350 CLRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLEL 409 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AFE G D Y A F V VTKDQR IGKV LAL Y GGA AF MA+ G++ Sbjct: 410 LEAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVH 469 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L PE + + WR Sbjct: 470 LP-----------------------------PEQ----------VDEIVLNWRAARPAFE 490 Query: 519 ELWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573 W+ + ++ N + + R V D L + LPSGR++ Y + Sbjct: 491 RWWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFVHDGRALRMQLPSGRAISYHNARLH 550 Query: 574 ------------GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 Y+ T R++ L+ N+ Q ++RD+ +++ + Sbjct: 551 LEPGANVPIAIYDKPEGYIETLDRKI---------LSNNMTQGLARDLFWSVLLDVDRV- 600 Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 IV V+DE + E + E L M +W GLPL AEG+ R+RK Sbjct: 601 EQIVHHVYDEALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655 >gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43] gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43] Length = 656 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 178/704 (25%), Positives = 288/704 (40%), Gaps = 86/704 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFE S DLT+ G+ +Y +D + F F +LW+ + V+P+ + Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWE--YGNVVPKQIVMH 63 Query: 61 LENTDVTIVAHNSYFERTV----LKACFNLDIPIH----RWICTLVLARSNGLPSALKAV 112 L + + VAHN+ F+ + L+ + C+ AR NGLP +L Sbjct: 64 LTSGGL-FVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 122 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + + D +H E + +Y D ++ Sbjct: 123 CEALGLPVQKDTEGAKWMKEIAANP------DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + PL +EQ + +D IN RG VDV A + + +LD E+ LT G + + Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + K+K + G ++D T ++ +++ L Q+ R+ ASR+ K + Sbjct: 237 VTEVAKIKEY-AATLGEDMDDAGRETLKK-IAARDNLPDSLRQLIELRLDASRAP--KKS 292 Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN--LPRPSRSHEELDQIITHL- 346 + + GRL+ + GA T R +G N PRP + + + I+ Sbjct: 293 AAILRAHVGGRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDACL 351 Query: 347 --PTSITSDPDP---LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + S P+ L ++D R A G LV ADL+GIEAR+ W+A + KL+ Sbjct: 352 RGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLE 411 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE G D Y +++ VTKDQR +GK +LALG+ G AF MA+ G++L Sbjct: 412 AFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHLP 471 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 PE E + WR Sbjct: 472 -----------------------------PEQVSE----------IVYNWRAGRPAFERW 492 Query: 521 WNELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN-R 577 W+ + ++ + ++ R + + KD L + LPSGR++ Y + + Sbjct: 493 WSLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLE 552 Query: 578 SYLNTTTRQLTREYTY-----GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 N + Y L+ N Q +SRD+ +++ + +IV ++DE Sbjct: 553 PGANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRV-EEIVHHIYDEA 611 Query: 633 VCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E + L M +W GLPL AEG+ R+RK Sbjct: 612 LLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655 >gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2] gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2] Length = 658 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 180/705 (25%), Positives = 292/705 (41%), Gaps = 87/705 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFE S DL G+ +Y + F F +LW+ +P+ + Sbjct: 8 LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWEL--GQPIPRQILAH 65 Query: 61 LENTDVTIVAHNSYFERTVLK----ACFNLDIPI----HRWICTLVLARSNGLPSALKAV 112 + T VAHN+ F+ + D+P + C+ AR NGLP L Sbjct: 66 IAAGK-TFVAHNAAFDALIWNDVLPRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRA 124 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + + H E + +Y D V ++ Sbjct: 125 AEALGLPLQKDREGAAAMKELMHNP------EWTPATHPELFARTYKYALLDTDVMVALW 178 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + +P+ KEQ W LD IN RG+ VDV A + ++ + + +D E+E+ T G + + Sbjct: 179 EATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKILT 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + ++++++ G L++ + + +L+ + + V R+ ASR A K + Sbjct: 239 TSVIKQIQS-FAAGLGAELDEAGRESVKALLTRD-DVPEVLRDVLTLRLDASR-APKKHD 295 Query: 293 TLVEAMNSDGRLRGTLQFLGA--SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ A + +GR+ + + GA R+ N+ RP R ++ IT+L + Sbjct: 296 AILRA-HVNGRMCHSTVYHGALSGRSTAMGCGDVQLLNVARP-RPGRKVKDTITYLDAAR 353 Query: 351 TSDPD---------PLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 D D PL ++D R A + G LVVADL+GIEAR W+A ++ L Sbjct: 354 RRDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDEGMLV 413 Query: 401 AFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +E G D Y A F++ VT DQR IGK+ LAL + GG A MA GL L Sbjct: 414 EYEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAYGLEL 473 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + +R+ H +S Sbjct: 474 SE-------------------------------DLRRKIVWS--------YRESHPALST 494 Query: 520 LWNELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--- 574 W L A ++ ++ R +D L + LPSGR++ Y + Sbjct: 495 WWASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPSGRAISYHNARLVL 554 Query: 575 --NNRSYLNTTTRQLTREYTYGGK-LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 + + + T K L+ N+ Q ++RD+ E M++ IV V+DE Sbjct: 555 EPGASAPIAVYDKPNGVVETLDRKILSNNMTQGLARDLFWEAMLSVAPV-EQIVHHVYDE 613 Query: 632 IVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 ++ E P+ E L ++ P WA GLPL AEG+ S +RK Sbjct: 614 VILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658 >gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3] gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3] gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5] gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12] Length = 1032 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 147/451 (32%), Positives = 229/451 (50%), Gaps = 21/451 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L ++ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L + + K + GK LI RF K R H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E++K++ S E + +LDQ INDRG+ VDVALA + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLWLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ L + + ++T +L+ + L A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLAD-EDLPDDARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346 K L+ +SD R RG LQ+ GA RT RW+G F PQNL R +ELD+ I L Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G+K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKV 434 D+Y T + F + P + K++ R IGK Sbjct: 417 DIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 123/285 (43%), Gaps = 45/285 (15%) Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ--------- 486 EL LGY+GG AF A GL+L A + W W + Sbjct: 748 ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 807 Query: 487 ---ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-------- 535 ++ I D + C+ +K+ WR+ H W +L + N Sbjct: 808 PGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAGA 867 Query: 536 -------KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS---------- 578 +AI + + K L + LPSGR L Y +G + + Sbjct: 868 HLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRIN 927 Query: 579 --------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 N TRQ T YT+GGK ENIVQA+ RD+LA M+N GY IVL+VHD Sbjct: 928 TNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVHD 987 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+VCETPDT ++ + L LM + P WA G PL AEG E KRY K Sbjct: 988 ELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032 >gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1] gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1] Length = 655 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 181/706 (25%), Positives = 289/706 (40%), Gaps = 87/706 (12%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLK 58 LF+DFET S DLT+ G+ +Y +D + F F +LW+ +P+ + Sbjct: 4 RLLFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEV--GQPVPKQII 61 Query: 59 EALENTDVTIVAHNSYFER----TVLKACFNLDIPIH----RWICTLVLARSNGLPSALK 110 L + VAHN+ F+ TVL+ + C+ AR NGLP +L Sbjct: 62 GHLNGS--PFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLA 119 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 EAL L QK EG + + D +H E + +Y D Sbjct: 120 GACEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFTRTYKYALIDTDAMVG 173 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ PL ++EQ + +D IN RG VDV A + + +LD E+ LT G + Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + + K+K + G ++D T ++ +++ L Q+ R+ ASR+ K Sbjct: 234 LAVTEVAKIKEY-AATLGEDMDDAGRETLKK-IAARDNLPDSLRQLIELRLDASRAP--K 289 Query: 291 LNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN--LPRPSRSHEELDQIITH 345 + + + GRL+ + GA T R +G N PRP + + + I+ Sbjct: 290 KSAAILRAHVGGRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDA 348 Query: 346 L---PTSITSDPDP---LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWK 398 + S P+ L ++D R A G LV ADL+GIEAR+ W+A + K Sbjct: 349 CLRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPK 408 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AFE G D Y +++ VTKDQR +GKV +LALG+ GG AF MA+ G++ Sbjct: 409 LEAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVH 468 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L PE E + WR Sbjct: 469 LP-----------------------------PEQVSE----------IVYNWRAGRPAFE 489 Query: 519 ELWNELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 W+ + ++ + ++ R + +D L + LPSGR++ Y + + Sbjct: 490 RWWSLCEYSVLMALDQPGREVVMPVGRDFCSQITFVRDARALRMHLPSGRAISYHNARLH 549 Query: 577 -RSYLNTTTRQLTREYTY-----GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 N + Y L+ N Q ++RD+ +++ + +IV V+D Sbjct: 550 LEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHHVYD 608 Query: 631 EIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E + E + L M +W GLPL AEG+ R+RK Sbjct: 609 EALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] Length = 838 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 198/804 (24%), Positives = 316/804 (39%), Gaps = 140/804 (17%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM------PQV 56 IDFETRSP D+ K G Y+ D + + V+LW H P Sbjct: 41 IDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPTD 100 Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC----FNLD-IPIHRWICTLVLARSNGLPSALKA 111 L + + AHN++FER + + I +W C+ A + LP +L+ Sbjct: 101 LFAFILAGGLVE-AHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLEE 159 Query: 112 VGEALKLSSQKMEEGKELIARFCKGET------HECLYDRNKPNHREAWRLFG------- 158 A+ L K EG++L+ + CK + ++D A++ G Sbjct: 160 AVAAMDLGIDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIVYHE 219 Query: 159 ---------EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 +YCK DV + L LS +E E W +DQ +N RG D+ +A Sbjct: 220 TEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQALS 279 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 + R +L+ LE+LT ++S+ +K WL E L L D T + L + ++L Sbjct: 280 MASEWRKRLNSILEALTG--ITSATKRAAVKEWLVEEEDLDLPDTAADTLKHYLEN-EEL 336 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVE-AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + +A +V ++++ K N +++ A D R R + + GA TGRW+G N Sbjct: 337 SARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGA-GTGRWAGKGIQVHN 395 Query: 329 LPRPSRSHEELDQIITH-----LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383 P ++ D+ L D + +S +R ++A EG++L+VAD A Sbjct: 396 FPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADYAA 455 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQ-----------RAI 431 IEAR + W A +Q L F G+D+Y + ++ KD R Sbjct: 456 IEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCRQF 515 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL--------------------VKTNSA 471 GK L LGY G F G+ + L + T + Sbjct: 516 GKQAILGLGYGMGYMTFLLTCRKYGITFSRAEVLRIMGPEKLDKTEEWVRKQLCLDTPPS 575 Query: 472 PEEWEDAENF---------CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 E+A+ + R E + + + +R ++ +V +W+ Sbjct: 576 KMTPEEAKRYSARKRQAARSRRRLIEAREDPAKIVHELALMKHTVDIYRARYPQVKAMWS 635 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYM------------------------------- 551 + Q +++ + + + Sbjct: 636 DQEACAIQAVKSLPTPEELTQLHDNGIELPREVFTASDPVECGKVKWYMSEARTVVDALA 695 Query: 552 ----KKDKNNLILMLPSGRSLVYRDVGNNRSY--------------LNTTTRQLTREYTY 593 K L LPSGR + Y D + ++ TR+ R TY Sbjct: 696 GTIHVKQGKWLHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTATY 755 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 GGK+ ENI QAV+RDI+AE M+N+ K G YD +++VHDE+VCE + D+ + LM Sbjct: 756 GGKIVENITQAVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEVDE-DKGDLEEFETLM 814 Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675 + P WA G P+ AE KRYRK Sbjct: 815 SDLPIWAAGCPIVAEAERFKRYRK 838 >gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 952 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 113/331 (34%), Positives = 167/331 (50%), Gaps = 14/331 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L ID ET S +DL K G+ KYAE D ++LFA+ DD V++ D + ++P+ + Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL + + A N+ FER L + W CT++ + GLP +L+ VGE LKL Sbjct: 61 SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174 QKM EGK LI F CK + RN P+H E W F EY + DV EI K+ Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIKKK 180 Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L P+ E E +++DQ INDRG +D L + + ++ R + LT + + Sbjct: 181 LSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIELTG--LEN 238 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +LK WL + GL ++ L + + L + + +V R S+S+V K + Sbjct: 239 PNSPMQLKEWLNEK-GLEIDSLAKKDVESALKNAEGD---IKEVLELRQELSKSSVRKYD 294 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + +D R+RG LQF GA+RTGR+ Sbjct: 295 AMKNVKGNDKRVRGLLQFYGANRTGRYCLTG 325 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 110/371 (29%), Positives = 174/371 (46%), Gaps = 65/371 (17%) Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD---PDPLQIISDCVRSCVIASEGKKL 376 SG + QNL R + +L + + + + P ++S +R+ I EG + Sbjct: 631 SGRLIQVQNLRRNNLQDLDLARSLVRNKEYESLEMLYDSPSDVLSQLIRTAFIPKEGCRF 690 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKV 434 +V+D + IEARVLAW+AGE W L AF+ GED+Y +T ++ F V + V D R GKV Sbjct: 691 IVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMFGVPVVKHGVNGDLRQKGKV 750 Query: 435 MELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 LA GY G A + M + GL+ + Sbjct: 751 ATLACGYGGSVGALKAMGAIEMGLSEDELQS----------------------------- 781 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + +WR+ + + LW ++ ++ ++ R + + + + Sbjct: 782 ------------IVDSWREANPNIVSLWWDIDSVVKRVVKT------RSKEEYKNLVISY 823 Query: 554 DKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-------QLTREYTYGGKLTENIVQA 604 +K L + LPS R L Y +G NR + + + +YGGK ENIVQA Sbjct: 824 EKGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVVGNKWDKIESYGGKFVENIVQA 883 Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664 ++RDILAE MM K G++IV+ +HDE+V E +D + + +M+ PSWA GL L Sbjct: 884 IARDILAEAMMRLEKKGFNIVMHIHDEVVIE---SDSSSIEEINEIMSLVPSWAPGLILD 940 Query: 665 AEGYESKRYRK 675 A+G+ES+ Y+K Sbjct: 941 ADGFESEFYKK 951 >gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e] gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e] Length = 461 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 148/451 (32%), Positives = 229/451 (50%), Gaps = 21/451 (4%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L A+ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L + + K + GK LI RF K R H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E++K++ S E + +LDQ INDRG+ VDVALA + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G ++ L L+ L + + ++T +L+ + L A + R+ A+ +A Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLAD-EDLPDDARTIIEMRLGAASTA 296 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346 K L+ +SD R RG LQ+ GA RT RW+G F PQNL R +ELD+ I L Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356 Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 D ++ + VRSC+I G+K VVAD + +E R LAW+AGE+ L F G Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416 Query: 407 DLYVTTYARSFNVAPAQVTKDQ---RAIGKV 434 D+Y T + F + P + K++ R IGK Sbjct: 417 DIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447 >gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781] gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781] Length = 655 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 178/704 (25%), Positives = 284/704 (40%), Gaps = 87/704 (12%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60 LF+DFE S DLT+ G+ +Y +D + F F +LW+ +P+ + Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEV--GQPVPKQIVGH 63 Query: 61 LENTDVTIVAHNSYFERT----VLKACFNLDIPIH----RWICTLVLARSNGLPSALKAV 112 L + VAHN+ F+ VL+ + C+ AR NGLP +L Sbjct: 64 LNGS--PFVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 121 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EAL L QK EG + + D +H E + +Y D ++ Sbjct: 122 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVGVW 175 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + PL + Q + +D IN RG DV A + + +LD E+ LT G + + Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + K+K + G ++D T ++ +++ L Q+ R+ ASR+ K + Sbjct: 236 VTEVAKIKEY-AATLGEDMDDAGRETLKK-IAARDNLPDSLRQLIELRLDASRAP--KKS 291 Query: 293 TLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN--LPRPSRSHEELDQIITHL- 346 + + GRL+ + GA T R +G N PRP + + + I+ Sbjct: 292 AAILRAHVGGRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDACL 350 Query: 347 --PTSITSDPDP---LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + S P+ L ++D R A G LV ADL+GIEARV W+A + KL+ Sbjct: 351 RGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLE 410 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE G D Y +++ VTKDQR +GK +LALG+ GG AF MA+ G++L Sbjct: 411 AFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHLP 470 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 PE E + WR Sbjct: 471 -----------------------------PEQVSE----------IVYNWRAGRPAFERW 491 Query: 521 WNELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN-R 577 W+ + ++ + ++ R + + KD L + LPSGR++ Y + + Sbjct: 492 WSLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLE 551 Query: 578 SYLNTTTRQLTREYTY-----GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 N + Y L+ N Q ++RD+ +++ + +IV V+DE Sbjct: 552 PGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHHVYDEA 610 Query: 633 VCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E + L M +W GLPL AEG+ R+RK Sbjct: 611 LLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905] Length = 533 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 149/421 (35%), Positives = 212/421 (50%), Gaps = 19/421 (4%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 6 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 124 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI FCK R H E WR F Y D+ RE++ RL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWN 184 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 185 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R++AS ++ K L++ Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKEMLAIRLQASTTSTSKYKALMKG 303 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I P + L Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEA-PNAAAKTLKCL 362 Query: 358 QIISDCVRSCVIAS----EGKKLVVADLAGIEARVLAWMAGEQW------KLKAFETGED 407 QI S V + S KL D EA + W LKAF G Sbjct: 363 QIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRH 422 Query: 408 L 408 L Sbjct: 423 L 423 >gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68] Length = 385 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 139/379 (36%), Positives = 204/379 (53%), Gaps = 10/379 (2%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ +D PV +WD +P L EA+ Sbjct: 6 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 TDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 + + HNS+F+RTVL+ A L P+ RW T+V A ++GLP +L + E L + Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI FCK R H E WR F Y D+ RE++KRL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG C+D+ LA + VD E+ +L + + +T G V ++ + Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 L + G+ L D+ +T +R ++ L ++ R +AS ++ K L++ Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRQQASTTSTSKYKALMKG 303 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355 ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS E++D+ I L + Sbjct: 304 VSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDN 363 Query: 356 PLQIISDCVRSCVIASEGK 374 +++ S +R C+IA GK Sbjct: 364 IMELTSSALRGCIIAPTGK 382 >gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1] gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1] Length = 1062 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 145/467 (31%), Positives = 227/467 (48%), Gaps = 40/467 (8%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 LF+D ET S +DL K G YAE +++ + D+ V+ WDC P MP+ L++AL Sbjct: 7 LFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPRELRKAL 66 Query: 62 E----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 ++A+ F+R V++ + +D+P+ + T+++A + LP +L + L Sbjct: 67 RQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDMQCQVLG 126 Query: 118 LSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + ++ K + GK LI RFCK R + H E W F Y D+ RE++ R Sbjct: 127 VDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREVYWR 186 Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + + KE E+ +DQ INDRG+ VDV LA+ + V + +L +E G ++ Sbjct: 187 IPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERFGGKLTG 246 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 + L L+ + + ++T +L + + R+ AS +A K N Sbjct: 247 NDFLPILRDI---APAFTIHNAQKSTLNDLLED-PDFPDEGKALIEMRLGASSTASTKYN 302 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS------------------- 333 LV +++DGR RG LQ+ GA RT RW+G F PQNL R Sbjct: 303 PLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESDVS 362 Query: 334 ---RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390 RSH + I + L + D ++ + VR C+I ++GKK VVAD + +E R LA Sbjct: 363 FWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRGLA 422 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT---KDQRAIGKV 434 W+AGE+ L F+ G D+Y T + F + P + KD R IGK Sbjct: 423 WVAGEKTALMVFKAGRDIYCETAGKMFGLDPDYIKANRKDLRQIGKA 469 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 134/293 (45%), Gaps = 53/293 (18%) Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH----PE 491 EL LGY GG AF + A GL+L T A ++K W A+ + + N P+ Sbjct: 770 ELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARINEAKRPPK 829 Query: 492 HAIED--------LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN--------- 534 +D + C+ +K+ WR+ H + W EL A I N Sbjct: 830 PGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPGKAYWAGA 889 Query: 535 ------GKAIIARKRRDVPLVYMKKDKN-------NLILMLPSGRSLVYR---------- 571 KA+ + + ++++ L + LPSGR + Y Sbjct: 890 NVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEI 949 Query: 572 --DVGNNRS-------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 D G R+ N TTRQ +YTYGGKLTENIVQA+ RDILA M AGY Sbjct: 950 DEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGY 1009 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 +IVL+VHDE++ E PDTD++ L LM P WAKG PL AEG RYRK Sbjct: 1010 EIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062 >gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C] Length = 686 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 166/724 (22%), Positives = 258/724 (35%), Gaps = 149/724 (20%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICTLVLARSNG 104 P L + + N A N FE + + + + C + AR Sbjct: 13 GGPKPTDLIDHIANGGPIA-AWNITFEFWIWNMVLAKSEGWPWLQLEQCYCDMAKARRFS 71 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHREAWRLFGEYC 161 LP +L +AL+ +++K ++GK+LI + C+ + + YC Sbjct: 72 LPGSLDTAAKALR-TAEKDKKGKQLIGKLCRPVSATKARPEPRWTLYTAPQDYADLYRYC 130 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 DV + + ++ E+E W DQ IN RG VDV IV + E Sbjct: 131 DQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNALDIVGQTTRRFTME 190 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 L ++T G V S + KL +L G + +L T L + L P A ++ R Sbjct: 191 LAAITNGAVGSVSEVAKLTDFL-ATVGCRMHNLKSETVAETLERD-DLNPTARRILEIRE 248 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + V KL +L ++SDGRLR F GA TGRWS QNL + + Sbjct: 249 ALAGANVKKLFSLKAQISSDGRLRNQYNFFGA-GTGRWSAGGVQLQNLTSKGPKSKTCNG 307 Query: 342 IITHLPTSITSD----------------------------------------------PD 355 + S + D Sbjct: 308 CGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLKHRNLDLIIDIWGD 367 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 P+ ++S C+R IA+ GKK V D + IEA VLA +A +W+++ F T +Y + ++ Sbjct: 368 PITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFRTHGKIYEMSASK 427 Query: 416 SFNVAPAQVT----------KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 V ++ ++++GKV ELA GY G A++ + + Sbjct: 428 ISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFGAEEHFEDDDA--- 484 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW---- 521 ++ WR + E W Sbjct: 485 -------------------------------------MKKAILGWRDASPEIVEFWGGQY 507 Query: 522 -------------NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 L A I N K V + + L LPSGR L Sbjct: 508 RRDPYTRKWVREYYGLEGAVIMAILNP-----GKCYAVGDITYAVFDDVLYCRLPSGRFL 562 Query: 569 VYRDVGNNRS-------------YLNTTTRQ----LTREYTYGGKLTENIVQAVSRDILA 611 Y S NT +++ R TYGG+L EN+ QA + D+ A Sbjct: 563 QYHQPKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQAAAADVQA 622 Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671 M GY +V+ HDE++ E P D + + LMT W + P++A G+E Sbjct: 623 YAMKQCENNGYPVVMHTHDELIAEVP-GDFGSVEEMAALMTGREPWREWWPIRAAGWEDD 681 Query: 672 RYRK 675 RY+K Sbjct: 682 RYQK 685 >gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 362 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 130/351 (37%), Positives = 195/351 (55%), Gaps = 8/351 (2%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L+ D ET I + G YAE V V+LFA+ D PV +WD +P L++A+ + Sbjct: 6 LWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIAD 64 Query: 64 TDVTIVAHNSYFERTVLKA-CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 D + HNS+F+RTVL+ L P+ RW T+V A ++ LP AL A+ E L + Sbjct: 65 PDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQDK 124 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI FCK R H W+ F Y D+ RE++KRL + Sbjct: 125 AKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E LW+ DQ INDRG+CVD+ L H + VD + +L ++ +T G V ++ + Sbjct: 185 YQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQRD 244 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 + + G+ L D+ ++T +R ++ L P ++ + R++AS ++ K TL+++ Sbjct: 245 AMIKHIVESYGVELPDMQKSTIERRIAD-PDLPPAVKELLHIRLQASATSTSKYKTLLKS 303 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 ++SDGRLRGTLQF GASRTGRW+G +F PQNL R S S EE++ I + Sbjct: 304 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMKA 354 >gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46] Length = 330 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 118/336 (35%), Positives = 173/336 (51%), Gaps = 19/336 (5%) Query: 4 LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 + ID E S D++KCG KY AED +++ A+ D PV D P + Sbjct: 1 MNIDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYET 60 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K AL + V A N+ FERT L FN +P WICT+V + GLP++L VGE L Sbjct: 61 FKIALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 +L +QK + GK LI F CK RN P H E W+ F +YC DV V I Sbjct: 121 RLQNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMAIA 180 Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ P+++ EQ+ W DQ INDRG + +L N + + +L ++ + +T + Sbjct: 181 NKIKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQITD--L 238 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L TWL E GL + +L + T Q L K+ T +A ++ R++ S+++V K Sbjct: 239 ENPNSPTQLLTWLNKEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKK 295 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 N + + M SD R+RG QF GA TGRW+G Sbjct: 296 YNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQL 330 >gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] Length = 356 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 110/403 (27%), Positives = 169/403 (41%), Gaps = 66/403 (16%) Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 K + A +D R RG QF GA+RTGRW+G + QNLP+ + + + + Sbjct: 4 KQKYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIG 63 Query: 348 T---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 D +S +R+ IA G K VAD + IEARV+A +AGE W+ F+ Sbjct: 64 DYDSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKN 123 Query: 405 GEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461 G D+Y + ++ F+V + + R GK+ ELALGY G A + M + GL + Sbjct: 124 GGDIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALEMGLTEDE 183 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 LV WRQ + + LW Sbjct: 184 LQPLVDA-----------------------------------------WRQSNPNIVALW 202 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY 579 + A + I+ + L++ LPSGR L Y +G N+ Sbjct: 203 WDFDTAIKNAIK------MHCSTASHGIKFTWRSGMLLITLPSGRKLTYVKPRIGENKFG 256 Query: 580 LNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + T++ R YG K EN+VQA+SRD+L M + I VHDE+ Sbjct: 257 GESVTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMKTLSH--CFICGHVHDEL 314 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + E +++ + +L M P W + L+A+GY ++ Y+K Sbjct: 315 IIEC--SEKVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355 >gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont phage 1] Length = 415 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 152/419 (36%), Positives = 228/419 (54%), Gaps = 16/419 (3%) Query: 162 KGDVTVTREIFKRLEPLSSK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 D+ TREI++ L + E LW LDQ IN RG C+DV LA + V+ E+ +L Sbjct: 1 GSDILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLS 60 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + LT V ++ + L + G+ L D+ +T QR + ++ + P ++ + Sbjct: 61 TVTQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRI-NDPDIPPALRELLSI 119 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R+++ R++ K L++++++DGRLRGT QF GASRTGRW+G +F P NLPRP+ + Sbjct: 120 RLQSCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTI 179 Query: 340 DQIITHLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 D I L D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+AGE W Sbjct: 180 DNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENW 239 Query: 398 KLKAFET-----GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 K+ AF G+DLY YAR+FN+ P VTK QR IGKVMEL LGY GG AF A Sbjct: 240 KVNAFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFA 299 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 L+L A+ N +A ++ + E + + T C+ +K+ WR Sbjct: 300 LAYSLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRN 358 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 H++ W ++ A +Q I++ ++ V ++DK+ L + LPSGRSL Y Sbjct: 359 AHTQTVSFWYDIEDAVKQAIQSPGVAFKCRKLSV-----RRDKSWLRICLPSGRSLCYP 412 >gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 368 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 132/416 (31%), Positives = 188/416 (45%), Gaps = 67/416 (16%) Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R++ S+++V K N + + M SD R+RG QF GA TGRW+G QNL + S Sbjct: 1 EIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGA-GTGRWAGRGVQLQNLTKHYISDT 59 Query: 338 ELDQIITHLPTSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 EL+ + D D P ++S VR+ A EG +L V+D + IEARV+AW Sbjct: 60 ELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAW 119 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQ 449 A EQW+L F T +Y + ++ FNV +TK R GKV ELALGYQGGA A + Sbjct: 120 YAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALK 179 Query: 450 KMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 M + G+ N + Sbjct: 180 AMGALEMGIEENELQ-----------------------------------------GLVD 198 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 +WR + + W +A T+++ RK + K L++ LPSGR+L Sbjct: 199 SWRNANPNIVNFWKACQEAAINTVKS------RKTHHTHGLRFYMKKGFLMIELPSGRAL 252 Query: 569 VYRD--VGNNR------SYLNTT-TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 Y VG N ++ R+ ++ TYGGKL ENIVQA +RD+LA + Sbjct: 253 AYPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA 312 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 G+ IV VHDE++ E P + +M WAKGL L ++G+ S Y K Sbjct: 313 LGFKIVGHVHDEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367 >gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 352 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 120/401 (29%), Positives = 179/401 (44%), Gaps = 68/401 (16%) Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 + V + + + + R SRS+V K +++ +D R G LQF GA+RTG Sbjct: 2 AKESVDDALVSASGEVKEALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTG 61 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLP------TSITSDPDPLQIISDCVRSCVIAS 371 RW+G + QNLPR + + +S PD L S +R+ I S Sbjct: 62 RWAGRLVQVQNLPRNYLPDLAQARSLVRDGNGETLEMLYSSVPDTL---SQLIRTAFIPS 118 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ--VTKDQR 429 +G + +VAD + IEARVLAW+AGE+ L AF+ GEDLY T + F V + V + R Sbjct: 119 KGHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELR 178 Query: 430 AIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 GK+ LA GY G A + M + GL+ + Sbjct: 179 QKGKIAVLACGYNGSVGALKAMGALKMGLSEDELQ------------------------- 213 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + AWR + + +LW+++ A + I G+ + + Sbjct: 214 ----------------PIVDAWRAANPNIVQLWHDVDNAATRAISTGRPVT------LGN 251 Query: 549 VYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-------RQLTREYTYGGKLTE 599 + +K L + LPSGR L Y +G NR + T R+ + TYGGKL E Sbjct: 252 LGFEKKSGMLFINLPSGRRLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVE 311 Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 NIVQA +RD+L E + AG+ IV+ +HDE+V + P Sbjct: 312 NIVQATARDLLVEAITRIENAGHRIVMHIHDEVVIDEPINS 352 >gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 328 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 132/330 (40%), Positives = 187/330 (56%), Gaps = 16/330 (4%) Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYV 410 +Q+ S +R C++A GKKLVV+DL+ IE R+LAW+AGEQWKL AF G DLY Sbjct: 4 VMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPDLYK 63 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 YAR+FN++ VTK QR IGKVMEL LG+ GG AF A GL+L A N Sbjct: 64 LAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAALPNI 123 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+ + + + + + + AC+ +K+ WR+ H + W +L + Sbjct: 124 PRDVQREAKGWYDESVKRKATYGLSER-VFIACDSLKRLWRRAHPETCDFWYQLERTVRT 182 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTR 585 I K + +++D L + LPSGR+L Y N +Y+ N+ +R Sbjct: 183 AIATPA-----KTLYCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGINSYSR 237 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + R TYGGKL EN+ QA +RD+LA M AGY IVLTVHDE++CE PDTD++ + Sbjct: 238 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDYTDA 297 Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L L+++NP WA +PL A G+E+ YRK Sbjct: 298 ALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327 >gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] Length = 341 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 148/321 (46%), Gaps = 32/321 (9%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + + ID ET S +D+ K G+ KYAE + ++LFA D V ++D V+P + Sbjct: 4 IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100 +A+ + DV A N+ FER L + P W CT++ + Sbjct: 64 DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRL 156 GLP +L+ VG L L QKM+EGK+LI F CK RN P H E W + Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQKMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKWTV 183 Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 F Y K DV V I ++L P+ E + LDQ INDRG VD+ + + Sbjct: 184 FKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVENAIAFDERS 243 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 + + E+ LT + + + ++K+WL + G+ +E L + ++ K Sbjct: 244 KATITDEMLGLTD--IDNPNSVSQMKSWLSDQ-GIEVESLGKKVVAEMI---KDAPEDLA 297 Query: 275 QVFNNRMRASRSAVLKLNTLV 295 QV + R + ++S+V ++ + Sbjct: 298 QVLSLRQQLAKSSVNRVGEIP 318 >gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4] Length = 773 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 140/395 (35%), Positives = 210/395 (53%), Gaps = 19/395 (4%) Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 +L + LT V ++ + L + G+ L D+ +T QR + ++ + P + Sbjct: 2 NRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPALRE 60 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + + R+++ ++ K L++++++DGRLRGT QF GASRTGRW+G VF P NLPRP+ Sbjct: 61 LLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLD 120 Query: 336 HEELDQIITHLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +D I L D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+A Sbjct: 121 PNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLA 180 Query: 394 GEQWKLKAFET-----GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 GE WK+ AF G+DLY YAR+FN+ P VTK+QR IGKVMEL LGY GG AF Sbjct: 181 GENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAF 240 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 A GL+L+ A N +A + + E + + + T C+ +K+ Sbjct: 241 LTFALAYGLDLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKR 299 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 WR H + W ++ A +Q I++ ++ V ++DK L + LPSGRSL Sbjct: 300 MWRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCRKLSV-----RRDKGWLRICLPSGRSL 354 Query: 569 VYRDVGNN---RSYLNTT--TRQLTREYTYGGKLT 598 Y +Y+ T +R+ R TYGGKL Sbjct: 355 CYPSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 43/78 (55%), Positives = 54/78 (69%) Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI Q+ +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N W Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 754 Query: 658 AKGLPLKAEGYESKRYRK 675 A LPL A G+E+ RYRK Sbjct: 755 AWDLPLSANGFETYRYRK 772 >gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5] Length = 773 Score = 327 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 142/395 (35%), Positives = 213/395 (53%), Gaps = 19/395 (4%) Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 +L + LT V ++ + L + G+ L D+ +T QR + ++ + P + Sbjct: 2 KRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRE 60 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + + R+++ ++ K L++++++DGRLRGT QF GASRTGRW+G VF P NLPRP+ Sbjct: 61 LLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLD 120 Query: 336 HEELDQIITHLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +D I L D +Q+ S +R C+IA GKKLV++DL+ IE R+LAW+A Sbjct: 121 PNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLA 180 Query: 394 GEQWKLKAFET-----GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 GE WK+KAF G+DLY YAR+FN+ P VTKDQR IGKVMEL LGY GG AF Sbjct: 181 GENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAF 240 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 A GL+L+ A + P +A ++ + E + + + I C+ +K+ Sbjct: 241 LTFALAYGLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEK-IFVNCDSLKR 299 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 WR H + W ++ A +Q I++ ++ V ++DK L + LPSGRSL Sbjct: 300 MWRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCRKLSV-----RRDKGWLRICLPSGRSL 354 Query: 569 VYRDVGNN---RSYLNTT--TRQLTREYTYGGKLT 598 Y +Y+ T +R+ R TYGGKL Sbjct: 355 CYPSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389 Score = 117 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 43/78 (55%), Positives = 54/78 (69%) Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI Q+ +RD+LA M KAGY+IVLTVHDEI+ E PDT +F+A L L++ N W Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHW 754 Query: 658 AKGLPLKAEGYESKRYRK 675 A LPL A G+E+ RYRK Sbjct: 755 AWDLPLSANGFETYRYRK 772 >gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 204/370 (55%), Gaps = 9/370 (2%) Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + G+ L D+ +T QR + ++ + P ++ + R+++ ++ K L++++++ Sbjct: 62 QHIASAFGITLPDMQASTLQRRI-NDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSA 120 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358 DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A N P Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPG 300 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 +A + + E + + + T C+ +K+ WR H + W ++ A +Q I+ Sbjct: 301 VKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359 Query: 534 NGKAIIARKR 543 + ++ Sbjct: 360 SPGIAFKCRK 369 >gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2] gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2] gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 204/370 (55%), Gaps = 9/370 (2%) Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + G+ L D+ +T QR + ++ + P ++ + R+++ ++ K L++++++ Sbjct: 62 QHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSA 120 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358 DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N P Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPG 300 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 +A + + E + + + T C+ +K+ WR H + W ++ A +Q I+ Sbjct: 301 VKREAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359 Query: 534 NGKAIIARKR 543 + ++ Sbjct: 360 SPGIAFKCRK 369 >gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 9/370 (2%) Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + G+ L D+ +T QR + ++ + P ++ + R+++ ++ K L++++++ Sbjct: 62 QHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSA 120 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358 DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + P Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPG 300 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 +A ++ + E + + + T C+ +K+ WR H + W ++ A +Q I+ Sbjct: 301 VKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359 Query: 534 NGKAIIARKR 543 + ++ Sbjct: 360 SPGIAFKCRK 369 >gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 136/370 (36%), Positives = 203/370 (54%), Gaps = 9/370 (2%) Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + G+ L D+ +T QR + ++ + P ++ + R+++ ++ K L++++++ Sbjct: 62 QHIASAFGITLPDMQASTLQRRI-NDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSA 120 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358 DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+ AF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTK+QR IGKVMEL LGY GG AF A GL+L+ A N Sbjct: 241 ARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLG 300 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 +A + + E + + + T C+ +K+ WR H + W ++ A +Q I+ Sbjct: 301 VKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359 Query: 534 NGKAIIARKR 543 + ++ Sbjct: 360 SPGIAFKCRK 369 >gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2] gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2] gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 9/370 (2%) Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E ELW LDQ IN RG C+DV LA + V+ E+ +L + LT V ++ + L Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + G+ L D+ +T QR + ++ + P ++ + R+++ ++ K L++++++ Sbjct: 62 QHIASAFGITLPDMQASTLQRRI-NDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSA 120 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD--PDPLQ 358 DGRLRGT QF GASRTGRW+G VF P NLPRP+ +D I L D +Q Sbjct: 121 DGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQ 180 Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-----GEDLYVTTY 413 + S +R C+IA GKKLV++DL+ IE R+LAW+AGE WK+KAF G+DLY Y Sbjct: 181 LTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAY 240 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 AR+FN+ P VTKDQR IGKVMEL LGY GG AF A GL+L+ A + P Sbjct: 241 ARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPG 300 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 +A ++ + E + + + I C+ +K+ WR H + W ++ A +Q I+ Sbjct: 301 VKREATSWYQKSVETDKTYGLSEK-IFVNCDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQ 359 Query: 534 NGKAIIARKR 543 + ++ Sbjct: 360 SPGIAFKCRK 369 >gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1] gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 524 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 134/481 (27%), Positives = 206/481 (42%), Gaps = 82/481 (17%) Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 V+ + L TWL + G+ E + + +++L+ + A Q R A++++ Sbjct: 91 VTKATKAADLTTWLRDQ-GVETEGVAKAAVRQMLAG--DIEGAARQAVEIRAEAAKASTA 147 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 KL +V+ DGR RG GA TGRW+G + QNLPR +L + Sbjct: 148 KLTAMVKCACDDGRARGLHLVYGA-GTGRWAGRLIQLQNLPRGVIKKADLAIPLIIDGDI 206 Query: 350 ---ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--- 403 PL +IS +R C+I +EG + +D + IE R+ AW+A E+WK++AF Sbjct: 207 DLVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFD 266 Query: 404 --TGEDLYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 TG DLY+ + + + + ++ GKV ELALG+ GG AFQ MA+ Sbjct: 267 AGTGRDLYLIGAEKILTLLKVLYAHPLNENSPERTPYGKVPELALGFGGGVGAFQSMAAI 326 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ +++K AWR+ H Sbjct: 327 YGM---------------------------------------KVTDEEADQIKVAWREAH 347 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 RV LW + A I N +++ + L ++LPSGR L Y Sbjct: 348 PRVVALWRNMEDAAFNAISNPGRVVS---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPR 404 Query: 575 NNR--------------------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + +N+ TR+ R TYGG L EN +QA++RD+LA + Sbjct: 405 IEKRRPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANAL 464 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 + AGY +V+ VHDE + E + +M P+WA GLP+ A G+ RYR Sbjct: 465 LKLEAAGYPVVIHVHDEALAEVRKGV-GSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYR 523 Query: 675 K 675 K Sbjct: 524 K 524 >gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 422 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 159/410 (38%), Positives = 204/410 (49%), Gaps = 57/410 (13%) Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASE 372 TGRW+G +F P NLPRP+ S + I + D + + S +RSC+IA Sbjct: 20 YTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPT 79 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAF------------------------------ 402 KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 80 HKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPIT 139 Query: 403 ----------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 G+D+Y YA SF +AP VTK+QR IGKV ELALGY GG AF A Sbjct: 140 LQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFA 199 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWR 511 + ++L A + P ++A +W + N P + D AC+ K+AWR Sbjct: 200 AMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWR 256 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570 H ++ W L A I + + + ++ + L L LPSGR L Y Sbjct: 257 NAHPAIAAFWQALQFAATDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYA 311 Query: 571 ---RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA M AGY IV Sbjct: 312 APRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIV 371 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 LTVHDE++ E D FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 372 LTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 422 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 159/410 (38%), Positives = 203/410 (49%), Gaps = 57/410 (13%) Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASE 372 TGRW+G +F P NLPRP+ S + I + D + + S +RSC+IA Sbjct: 20 YTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPT 79 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFE----------------------------- 403 KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 80 HKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPIT 139 Query: 404 -----------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 G+D+Y YA SF +AP VTK QR IGKV ELALGY GG AF A Sbjct: 140 LQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFA 199 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHAIEDLFIGTACERVKKAWR 511 + ++L A + P ++A +W + N P + D AC+ K+AWR Sbjct: 200 AMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWR 256 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570 H ++ W L A I + + + M+ + L + LPSGR L Y Sbjct: 257 NAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYA 311 Query: 571 ---RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 D SY+ T TR+ TR TYGGKL ENI QAVSRD+LA M AGY IV Sbjct: 312 APRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIV 371 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 LTVHDE++ E D FNA+ L LM + P WA+GLPL AEG+++ RYRK Sbjct: 372 LTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 284 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 136/278 (48%), Gaps = 15/278 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54 M + ID ET S D++KCG KY AED +++ A+ D + D P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + K AL + V A N+ FERT L FN +P WICT+V + GLP++L VG Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169 E L+L SQK + GK LI F CK RN P H E W+ F +YC DV V Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180 Query: 170 EIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 I +++ P+++ EQ W DQ INDRG + +L N + + +L ++ + +T Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265 + + +L WL E GL + +L + T Q L Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKE 276 >gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113] gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113] Length = 901 Score = 307 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 118/614 (19%), Positives = 203/614 (33%), Gaps = 89/614 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQV-----LKEALENT 64 DL + Y E ++ +F H D P +P+ LK LE+ Sbjct: 328 DLETNSLD-YME-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLARLKPLLEDP 385 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 V N F+R VL N I + +L L + + S ++ Sbjct: 386 RHGKVGQNLKFDRNVLA---NYGIELQGIHHDSMLESYV-----LDSTATRHNMDSLALK 437 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 L E + P ++ Y D ++ ++ + P +E+ Sbjct: 438 Y---LQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQLHRYFWPRIQQEES 494 Query: 185 LWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L L Q + G VD T + + KL+QE L G + Sbjct: 495 LRRLYQELEIPLIPVLSRMERNGVQVDTTQLKTQSDELAARLKKLEQEAFDLA-GESFNL 553 Query: 234 RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++++ L+ + L + T T T + VL P ++ Sbjct: 554 ASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQRLL------------ 601 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 Q+ S+ P Q P R H Q +T Sbjct: 602 -------------------QYRTLSKLKSTYTDRLPLQVNPHTGRVHTSYHQAVTATGRL 642 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +SDP+ I +R IA G +LV AD + IE R++A ++ ++ L AFE Sbjct: 643 SSSDPNLQNIPIRTAEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEA 702 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 ED++ T F +VT +QR K + L Y A + G+N H Sbjct: 703 EEDIHQRTATEVFRTPLEEVTPEQRRSAKAINFGLIYGMSA---HGLGRQLGINRTAAQH 759 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + E + + +N + A + ++ T R + HSR ++ N+ Sbjct: 760 YI------ERYFQRYPGVKAYMDNICQQARQKGYVETLFGR-RLYLPDIHSRQTQRRNQA 812 Query: 525 HQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + G A KR + +++K+ +N +++ LV+ L T Sbjct: 813 ERTAINAPMQGSAADIIKRAMIHTDGWLQKNSDNARMIMQVHDELVFE---VAEDKLEIT 869 Query: 584 TRQLTREYTYGGKL 597 R + T +L Sbjct: 870 MRAIRENMTAAAQL 883 >gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989] gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989] Length = 782 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 117/686 (17%), Positives = 214/686 (31%), Gaps = 150/686 (21%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D + Y ++ +F + C HD + LK LEN Sbjct: 202 DTETTSLD-YM-QAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQLSLECVLAALKPLLENP 259 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + V N +++ VL N DI + +L N + + A + Sbjct: 260 NKHKVGQNLKYDKHVL---LNHDIDLQGIAYDTMLESYVCNSVATRHDMDSLARFYLDRS 316 Query: 123 MEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 +++ + K T + + Y D VT ++ + + P + Sbjct: 317 TIHFEDVAGKKGAKQLTFNQI----------DIEIAAPYAAEDADVTLQLHQAIWPTLQQ 366 Query: 182 EQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E L ++ + I G VD L + ++ +L++E + G Sbjct: 367 EPTLQHVLESIEIPLLPVISRIERNGALVDATLLGQQSIELEQRLKELEKEAFDIA-GEE 425 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF + L + T T + VL P + +R Sbjct: 426 FNLSSPKQLGVILFEKLELPIIKKTPKGAPSTAEEVLQELALDYPLPKVLIEHR------ 479 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 G S+ P P R H Q +T Sbjct: 480 -------------------------GLSKLKSTYTDKLPQMINPATGRIHTSYHQAVTAT 514 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I +R +A +G K++ AD + IE R++A ++G++ L+A Sbjct: 515 GRLSSSDPNLQNIPIRNAEGRRIRQAFVAPKGYKILAADYSQIELRIMAHLSGDEGLLEA 574 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F V QVT++QR K + L Y A +A G+ N Sbjct: 575 FNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMSAF---GLAKQLGVGRND 631 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + + + A D ++ T R + + ++R Sbjct: 632 AQQYID------VYFERYPGVKSYMDGVRQQAAVDGYVETLEGR-RLYLPEINARNGMRR 684 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + G A KR + + L P + S +N Sbjct: 685 QAAERTAINAPMQGTAADIIKRAMIAV------DQWLCPTNPK-----------DESAVN 727 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD- 640 +++ VHDE+V E ++D Sbjct: 728 ----------------------------------------AKMIMQVHDELVLEVKESDL 747 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666 + L +MT+ +PL + Sbjct: 748 DAVREKLKRVMTTTVE--LSVPLIVD 771 >gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004] gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 932 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 114/693 (16%), Positives = 211/693 (30%), Gaps = 167/693 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVEL---------WDCVHDPVMPQVL---KEALE 62 D G+ ++ + FA + VE D + +VL K LE Sbjct: 355 DTETDGLDTLTVNLVGMSFAIAVGESEVEAAYLPLGHDYLDAPEQLDLHEVLAALKPLLE 414 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120 + ++ + N F+R VL D+ ++ + +L N + A + Sbjct: 415 DANLPKIGQNLKFDRGVLARY---DVALNGIVFDTMLESYVLNSVSGRHDMDSLADRHLG 471 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K +E+ + K T + +Y D VT + + + P Sbjct: 472 YKTTTFEEIAGKGKKQLTFNQI----------PLEEAAKYAAEDADVTLRLHQVMYPQID 521 Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G +D + + +L++ L G Sbjct: 522 SVPTLKSVFQNIEMPLVPVLSRIERTGVLIDAQTLAEHSTEITARLGELEKAAYELA-GE 580 Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF + L + + +T + VL Sbjct: 581 EFNLASPKQLQVILFEKLNLPVLKKTPNGAPSTNEEVLEELADNHELP------------ 628 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L+ G ++ P P R H Q +T Sbjct: 629 -------------------RVILEHRGLAKLKSTYTDKLPQMVNPLTKRVHTSYHQAVTA 669 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + DP+ I +R IA EG ++ AD + IE R++A ++ ++ L+ Sbjct: 670 TGRLSSRDPNLQNIPVRNDEGRRIRQAFIAPEGYCIMAADYSQIELRIMAHLSQDKGLLE 729 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F V +VT +QR K + L Y A + S Sbjct: 730 AFAQGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFGLIYGMSAFGLSRQLSI------ 783 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +A+ + E +P + Sbjct: 784 -------------PRGEAQRYMDLYFERYP----------------------------GV 802 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +Q E+G + GR L D+ + Sbjct: 803 LAYMERTRQQAAEHG-----------------------FVETLEGRRLYLPDIKS----R 835 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 N R+ + +Q + DI+ M+ + +++ VHDE+V Sbjct: 836 NAMRRKASEREA-----INAPMQGTAADIIKLAMIAVDNWIVSEQPNVRMIMQVHDELVF 890 Query: 635 ETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E +++ A + LM + +PLK + Sbjct: 891 EVHESELATAEQKISELMEKSMQ--LDVPLKVD 921 >gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 923 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 126/694 (18%), Positives = 218/694 (31%), Gaps = 168/694 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63 +D + Y ++ +F + HD +P+ LK LEN Sbjct: 348 VDTETTSLD-YM-QAELVGLSFAIEAGKAAYLPLGHDYPGAPSQLPREATLAKLKPLLEN 405 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 D+ V N ++ +VL N I + +L N + S G ALK Sbjct: 406 PDIKKVGQNLKYDMSVLA---NAGIQLKGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 462 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +E+ + K T + A Y D +T + + L P SK Sbjct: 463 KNISFEEIAGKGAKQLTFNQI----------ALEQAAPYAAEDADITLRLHQHLWPRLSK 512 Query: 182 EQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E+ L + I RG +D L ++ + + +L+Q + G Sbjct: 513 EEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKIDELEQHAHEIA-GEP 571 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 572 FNLSSTKQLQELFFTKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKIILEHRSL---- 627 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ P R R H Q Sbjct: 628 ---------------------------TKLKSTYTDKLPLMINGRTGRVHTSYHQANAAT 660 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I +R +A EGK+++ AD + IE R++A ++ ++ L+A Sbjct: 661 GRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRA 720 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F+VA VT +QR K + L Y A +A + N Sbjct: 721 FAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRN- 776 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 +A+++ + +P + Sbjct: 777 ---------------EAQSYIDTYFKRYP----------------------------GVL 793 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + E G RR L LP R +R+ + Sbjct: 794 KYMEETRAMASEQGYVSTLFGRR---------------LYLPEIR---------DRNAM- 828 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVC 634 R+ +Q + DI+ + M+ +++ VHDE+V Sbjct: 829 ------RRQAAERA-AINAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDELVF 881 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 E D + + LM + S +PL AE Sbjct: 882 EVDADKADALKEKVCELMAAAAS--LDVPLLAEA 913 >gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 896 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 119/653 (18%), Positives = 207/653 (31%), Gaps = 157/653 (24%) Query: 32 LFAFGFDDHPVELWDCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 L GF HP + W + + + +K EN+ + HN ++ VL+ N Sbjct: 345 LVGIGFGIHPKKAWYVPLNGKLGKQRVLEGVKPLFENSAIGFYGHNVKYDWHVLQ---NE 401 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLS--SQKMEEGKELIARFCKGETHECLYD 144 I I +LA + + E L L + ELI + L Sbjct: 402 GIQIQNICFDTILASYILNAHSRQHSLEVLALEYFGKVTIPISELIGKG-----KNVLSM 456 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIND 194 R+ P EYC DV T + + LE + E L + + Sbjct: 457 RDVPI-----ERVTEYCCEDVDFTCRLKEVLEKQLKERDLLNLYHQIELPLLVVLAKMER 511 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 RG VD+ L++ + E L + + ++ G + +++ LF++ G+ Sbjct: 512 RGIYVDIPYLEQLSKELTQELKTLQESIYTMA-GEEFNLNSPKQVSELLFIKLGIPAPKK 570 Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T T T VL K P A ++ R+ Sbjct: 571 TATGHSTSAEVLEFLKNDYPLAGKILEYRLLE---------------------------- 602 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366 + P Q +PR R H +Q + + DP+ I +R Sbjct: 603 ---KLRSTYVDALPSQVIPRTHRIHSTFNQSVAATGRLSSQDPNLQNIPIRTEEGRKIRG 659 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 EG + AD + IE R+LA ++ + + AF+ ED++ T A F + QV+ Sbjct: 660 AFRPEKEGWSFLSADYSQIELRLLAHLSQDPVLMAAFQNNEDIHTYTAASMFEIPLEQVS 719 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 K+QR K + + Y A +A G+ + + + Sbjct: 720 KEQRYQAKAINFGIIYGQQAF---GLARELGIEVKQASKFITMYF--------------- 761 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 R ++ L Q+ E GK++ R Sbjct: 762 -----------------------------QRYPKIKEYLDQSKENARATGKSVTLTGRER 792 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 + + K+ R+ R +NT Q Sbjct: 793 IIPEILSKNM--------QIRAAA------ERLAVNTPL------------------QGT 820 Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLY-HLM 651 + D++ M+ + ++L +HDE++ E PD + S L +M Sbjct: 821 AADLIKMAMLKMDEEIEKQHLKGFMILQIHDELIFEIPDEEISLFSQLVPEVM 873 >gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK] gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK] Length = 922 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 106/613 (17%), Positives = 190/613 (30%), Gaps = 91/613 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64 D G+ Y ++ +F ++ HD + + LK LE+ Sbjct: 348 DTETDGLD-YM-TANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDP 405 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N F+ ++L DI + +L N + AL+ K Sbjct: 406 AQNKVGQNLKFDMSILARY---DINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLEHK 462 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 +E+ + K T + + G Y D +T + L Sbjct: 463 NISFEEVAGKGKKQLTFNQI----------DLDVAGPYAAEDADITLRLHNLLNEKVESD 512 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + I G +D L + + +L+ + + Sbjct: 513 EQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDELETKAYEIA-EQEF 571 Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF + GL + +T + VL P + R Sbjct: 572 NLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPLPKILLEYR------- 624 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 625 ------------------------GLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATG 660 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA G K++ D + IE R++A ++G++ L+AF Sbjct: 661 RLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAF 720 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G+D++ T A + VT +QR K + L Y A +A G+ N Sbjct: 721 KQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAF---GLAKQLGMGRNEA 777 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + E+ HA E ++ T R + SR Sbjct: 778 QDYMN------VYFERYPGVLEYMESTRVHASEQGYVETLFGR-RLYLPDIKSRNGIRRK 830 Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +A G A II R V +++ + L++ LV+ + + Sbjct: 831 AAERAAINAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQESELDAV 890 Query: 581 NTTTRQLTREYTY 593 + R+L Sbjct: 891 SADVRRLMELAAE 903 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 19/111 (17%) Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------- 617 GR L D+ + N R+ +Q + DI+ M+ Sbjct: 813 GRRLYLPDIKS----RNGIRRKAAERAA-----INAPMQGTAADIIKRAMVLVDEWVEQQ 863 Query: 618 TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 +++ VHDE+V E +++ + ++ + LM +PL A+ Sbjct: 864 ETGRVRLLMQVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADA 912 >gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131] gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131] Length = 930 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 117/661 (17%), Positives = 212/661 (32%), Gaps = 165/661 (24%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHR 92 D PV+ + V+ +++K LE+ ++ + N ++ VL+ D + Sbjct: 391 DAPVQ---LPLEEVL-ELMKPILESENILKIGQNLKYDAEVLENYDIELKGIGYDTMLES 446 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 ++ V A + + K +E+ + K T + Sbjct: 447 YVLNSVAGM-----GRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTFNQI---------- 491 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDV 201 A Y D VT + + L P E +L ++ Q + +G +D Sbjct: 492 ALEEAANYAAEDADVTLLLHQALYPQLEAEPKLNHIFQNIEMPLVPVLVRMERKGVLIDA 551 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---- 257 + ++++ +L++E L G + ++L+T LF + L + T + Sbjct: 552 NVLAAQSKVITARLAELEKEAFELA-GEEFNLASPKQLQTILFEKLQLPVIKKTPSGAAS 610 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T + VL + +R A + Sbjct: 611 TNEEVLEELALNHALPKLLLEHRSLA-------------------------------KLK 639 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372 P PR R H Q +T + DP+ I +R IA E Sbjct: 640 STYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARE 699 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G K++ AD + IE R++A ++ ++ L AF G+D++ T A F V QVT DQR Sbjct: 700 GYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSA 759 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + L Y A +A G+ A+ + E +P Sbjct: 760 KAINFGLIYGMSAF---GLARQLGIPRGE----------------AQRYMDLYFERYP-- 798 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 + + Q E G Sbjct: 799 --------------------------GVLRYMENTRLQASEQG----------------- 815 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + GR L D+ ++ N R+ +Q + DI+ + Sbjct: 816 ------YVETLEGRRLYLADIKSS----NGMRRKAAEREA-----INAPMQGTAADIIKK 860 Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 M+ K D+++ VHDE+V E +++ E + + LM + +PLK Sbjct: 861 AMIAVDNWLQTEKPHADMLMQVHDELVFEVKESELERVQAQVQSLMEQSMK--LDVPLKV 918 Query: 666 E 666 + Sbjct: 919 D 919 >gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] Length = 911 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 122/709 (17%), Positives = 214/709 (30%), Gaps = 180/709 (25%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56 D ET + +D K ++ +F HD + Q Sbjct: 337 DTET-TSLDYMKA---------QLVGMSFAVKAGEAVYLPLAHDYPGAPEQLSLEFVMQK 386 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 L L + + V N ++++VL N ++ +L N + + Sbjct: 387 LGPILADENKAKVGQNLKYDKSVLA---NAGFALNGIKFDTMLESYVFNSVGTRHDMDSL 443 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 ALK K +++ + K T + Y D +T + + Sbjct: 444 ALKYLGHKNISFEDIAGKGKKQLTFNQI----------ELEKAAPYAAEDADITLRLHEV 493 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + I G +D + + + +L++E Sbjct: 494 LWPKIAADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLAAHSMRLGERLIELEKEAF 553 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+ LF + GL + T T + VL P + + Sbjct: 554 EIA-GEPFNLSSPKQLQVLLFEKLGLPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIEH 612 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P + R H Sbjct: 613 R-------------------------------GLSKLKSTYTDKLPLMVNEKTQRVHTSY 641 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q IT ++DP+ I +R IA++G K+V AD + IE R++A ++ Sbjct: 642 HQAITATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQ 701 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G D++ T A F V VT D R K + L Y A +A Sbjct: 702 DKGLLNAFANGLDVHSATAAEVFGVELDDVTTDMRRKAKAVNFGLIYGMSAF---GLARQ 758 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + H + + +E +M E E A E+ ++ Sbjct: 759 LDVPRHEAQHYID-----KYFERFPGVLEYM-ETTREKAAENGYV--------------- 797 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDV 573 + I R+ LP + R Sbjct: 798 ---------------------ETIFGRRLH-----------------LPEINARNGARRK 819 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVL 626 G R+ +N Q + DI+ + M++ + +++ Sbjct: 820 GAERAAINAPM------------------QGTAADIIKKAMLSVNRWVHEQAPNTIKLLM 861 Query: 627 TVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 VHDE+V E E+ + LM+ A +PL E E + Sbjct: 862 QVHDELVFEIKTDCAPEYT-KHICELMSQAA--ALDVPLIVEADEGDNW 907 >gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341] gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341] Length = 938 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 116/674 (17%), Positives = 212/674 (31%), Gaps = 164/674 (24%) Query: 33 FAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKA 82 +F + HD PQ L A LE+ + V N ++ +V+ Sbjct: 380 VSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQLKPLLEDENKAKVGQNLKYDASVIAR 439 Query: 83 CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 +++ R T++ + N + AL+ +++ + T Sbjct: 440 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190 + + +Y D VT + +R+ PL + E L + Sbjct: 498 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLS 547 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D L +Q + + +L+++ L G + ++L+T LF + L Sbjct: 548 RIERTGVMIDDMLLSAQSQEIALRLDELEKKAYELA-GQPFNLSSPKQLQTILFEQMKLP 606 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + Sbjct: 607 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 636 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 +++ G ++ P P R H Q +T ++DP+ I Sbjct: 637 -IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 695 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V Sbjct: 696 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 755 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ A+ + Sbjct: 756 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGE----------------AQEY 796 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 E +P V + SR Q + +TI Sbjct: 797 MDKYFERYP--------------GVMQYMEDTRSR------AAEQGYVETIF-------- 828 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 GR L ++ T+R R Sbjct: 829 -----------------------GRRLHLPEI---------TSRNGMRRKAAERAAINAP 856 Query: 602 VQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTS 653 +Q + DI+ + M+ +++ VHDE+V E ++ + + LM S Sbjct: 857 MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIEIKVQELMES 916 Query: 654 NPSWAKGLPLKAEG 667 A +PL A+ Sbjct: 917 AAELA--VPLVADA 928 >gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] Length = 929 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 117/598 (19%), Positives = 207/598 (34%), Gaps = 99/598 (16%) Query: 7 DFETRS----PIDL------TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S ++ T G+ Y + A + D P + + V+ Sbjct: 355 DLETDSLDTLSANIIGLSFATAPGVAAY------LPVAHDYLDAPAQ---LDRNDVL-AR 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LEN V N F+R VLK+ DI + +L N + Sbjct: 405 LKPLLENPQALKVGQNLKFDRGVLKSY---DIELQGIRFDTMLESYALNSVIGRHDMDTL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ + K +E+ + K T + A G Y D VT ++ + Sbjct: 462 ALRWLNHKTVTFEEIAGKGKKQLTFNQI----------ALEQAGHYAAEDADVTLQLHLK 511 Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P KEQ L + I G +D + T +Q + +L+Q+ Sbjct: 512 MWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQGILATHSQELGSRLAELEQKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + G+ T +T + VL+ P + + Sbjct: 572 ELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEH 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P P R H Sbjct: 631 R-------------------------------GLSKLKSTYTDKLPLMINPHSGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I +R IA G ++V AD + IE R++A ++ Sbjct: 660 HQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPPGYRIVAADYSQIELRIMAHLSQ 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF + +D++ T A F V+ +V+ +QR K + L Y + ++ Sbjct: 720 DKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSSF---GLSRQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + +E ++M E+ E A E ++ T + + + Sbjct: 777 LNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAEKGYVST-LDGRRLYLPDIN 829 Query: 515 SRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A II R V ++ ++ +++ LV+ Sbjct: 830 ASNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVHDELVF 887 >gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] Length = 911 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 115/650 (17%), Positives = 204/650 (31%), Gaps = 158/650 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 Q L L + V N ++++VL N ++ +L N + + Sbjct: 385 QKLGPILADAKKAKVGQNLKYDKSVLA---NAGYQLNGIKFDTMLESYVLNSVGTRHDMD 441 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 ALK K +++ + K T + G Y D +T + Sbjct: 442 SLALKFLGHKNISFEDIAGKGKKQLTFNQV----------ELDKAGPYAAEDADITLRLH 491 Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + I G +D + +Q + +L++E Sbjct: 492 QVLWPKLAADEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAHSQRLGERLLELEKE 551 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + G + ++L+ LF + L + T T + VL P + Sbjct: 552 AYEIA-GEPFNLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPLPKVII 610 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R G S+ P + R H Sbjct: 611 EHR-------------------------------GLSKLKSTYTDKLPLMVNEKTQRVHT 639 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA++G K+V AD + IE R++A + Sbjct: 640 SYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHL 699 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G D++ T A F V+ +VT D R K + L Y A +A Sbjct: 700 SQDKGLLSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNFGLIYGMSAF---GLA 756 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + H + + +E +M E E A E ++ Sbjct: 757 RQLDVPRHEAQHYID-----KYFERFPGVLEYM-ETTREKAAESGYV------------- 797 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YR 571 + I R+ L LP ++ R Sbjct: 798 -----------------------ETIFGRR-----------------LYLPEIKAQNGAR 817 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------I 624 G R+ +N Q + DI+ + M++ Y+ + Sbjct: 818 RKGAERAAINAPM------------------QGTAADIIKKAMLSVHSWVYEQAPNTVKL 859 Query: 625 VLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 ++ VHDE+V E D + + LM+ + +PL E E + Sbjct: 860 LMQVHDELVFEIKTDCVDAYTKHICELMSQAAT--LDVPLIVEADEGDNW 907 >gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 923 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 112/688 (16%), Positives = 199/688 (28%), Gaps = 155/688 (22%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D G+ Y V+ +F ++ HD + LK LE+ Sbjct: 349 DTETDGLD-YM-TANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRDWVLAQLKPLLEDP 406 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + + N F+ +++ I + + +L N + AL+ K Sbjct: 407 NQAKIGQNLKFDASIVARY---GIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHK 463 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 +E+ + K T + G Y D +T + L P Sbjct: 464 NISFEEIAGKGKKQLTFNQI----------DLAQAGPYAAEDADITLRLHNALYPKVEAD 513 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + E L + + G VD L + + +L+++ + Sbjct: 514 EKLKHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAARLDELEKKAFEIAD-QEF 572 Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF + GL + T +T + VL P + R Sbjct: 573 NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLILEYR------- 625 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 626 ------------------------GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATG 661 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R +A G K++ D + IE R++A ++G++ L AF Sbjct: 662 RLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAF 721 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T A + QV+ +QR K + L Y A +A + N Sbjct: 722 RHGKDIHAATAAEILGLDIEQVSSEQRRRAKAINFGLIYGMSAF---GLAKQLDMGRNEA 778 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + N E + + + E + G SR Sbjct: 779 QDYM--NVYFERYPGVLEYMESTRNTASEKGYVETLFGRRL-----YLPDIKSRNGLRRK 831 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +A G A K + Sbjct: 832 AAERAAINAPMQGTAADIIKLAMI------------------------------------ 855 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-E 641 +N VQ +D + M VHDE+V E ++ E Sbjct: 856 --------------AVDNWVQQQPQDEVRLLM------------QVHDELVFEVKESALE 889 Query: 642 FNASMLYHLMTSNPSWAKGLPLKAE-GY 668 + + LM + +PL A+ G+ Sbjct: 890 SVTAEVKALMEQAAT--LDVPLIADAGF 915 >gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155] gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155] Length = 921 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63 +D + Y ++ +F + HD V + L+ LE+ Sbjct: 346 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQINKTVALEKLRPLLED 403 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 + V N ++ ++L N I + +L N + S G ALK Sbjct: 404 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 460 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +E+ + K T + Y D +T + + L P K Sbjct: 461 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 510 Query: 182 EQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E EL + I +G +D L + + + L+++ + G Sbjct: 511 EAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 569 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 570 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 625 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P + R H Q Sbjct: 626 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 658 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA +G+K++ AD + IE R++A ++ + LKA Sbjct: 659 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 718 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F +VT +QR K + L Y A +A + + Sbjct: 719 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 775 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + R+M+E Sbjct: 776 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 797 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580 +A + + R+ L LP R R G R+ + Sbjct: 798 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 836 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633 N Q + DI+ + M+N T+ +++ VHDE+V Sbjct: 837 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 878 Query: 634 CETP-DTDEFNASMLYHLMTSN 654 E D E + LM Sbjct: 879 FEVDADKAEALKKTICTLMAQA 900 >gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] Length = 934 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 114/640 (17%), Positives = 203/640 (31%), Gaps = 157/640 (24%) Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAVG 113 K LEN + + N ++ VL N DI + +L Sbjct: 410 KPILENEKIGKIGQNLKYDAEVL---LNYDIELKGIAFDTMLESYVLNSVAGMGRHDMDS 466 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + + K +E+ + K T + Y D VT + + Sbjct: 467 LADRHLNHKTVSFEEIAGKGKKQLTFNQI----------PLEQAANYAAEDADVTLLLHQ 516 Query: 174 RLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E +L ++ Q + +G +D A+ +Q++ +L+++ Sbjct: 517 ALYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAAVLTAQSQVITARLAELEKQA 576 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + ++L+T LF + L + T + T + VL + Sbjct: 577 FDLA-GEEFNLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNHALPKLLLE 635 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R A + P PR R H Sbjct: 636 HRSLA-------------------------------KLKSTYTDKLPLMINPRTQRVHTS 664 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T + DP+ I +R +A +G K++ AD + IE R++A ++ Sbjct: 665 YHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFVARDGYKVMAADYSQIELRIMAHLS 724 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF G+D++ T A F V +VT DQR K + L Y A +A Sbjct: 725 QDKGLLTAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMSAF---GLAR 781 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ +A+ + E +P Sbjct: 782 QLGIPRG----------------EAQRYMDLYFERYP----------------------- 802 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + Q E G + GR L D+ Sbjct: 803 -----GVLRYMENTRLQASERG-----------------------YVETLEGRRLYLADI 834 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 ++ N R+ +Q + DI+ + M+ K D+++ Sbjct: 835 KSS----NGMRRKAAEREA-----INAPMQGTAADIIKKAMIAVDNWLETEKPSADMLMQ 885 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E +++ E + + LM + + +PLK E Sbjct: 886 VHDELVFEVKESELEKVQAKVQELMEQSMT--LDVPLKVE 923 >gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1] gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 516 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 131/456 (28%), Positives = 200/456 (43%), Gaps = 81/456 (17%) Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T+ +++L+ + A Q R A++++ KL +V+ DGR RG GA Sbjct: 107 TKAAVRQMLAG--DIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGA- 163 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSDPDPLQIISDCVRSCVIAS 371 TGRW+G + QNLPR S +L + PL +IS +R C+I + Sbjct: 164 GTGRWAGRLIQLQNLPRGSVKKADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPA 223 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNV------- 419 EG + +D + IE R+ AW+A E+WK++AF TG DLY+ + + Sbjct: 224 EGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVPYAH 283 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + ++++ GKV ELALG+ GG AFQ MA+ G+ Sbjct: 284 PLNENSQERTPYGKVPELALGFGGGVGAFQSMAAIYGM---------------------- 321 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 +++K AWR+ H RV LW + A I N ++ Sbjct: 322 -----------------KVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVV 364 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-----------DVGNNRSYL-------- 580 + + L ++LPSGR L Y ++G + L Sbjct: 365 S---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMS 421 Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 N+ TR+ R TYGG L EN +QA++RD+LA ++ AGY +V+ VHDE + E Sbjct: 422 VNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEIRKG 481 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +M P+WA GLP+ A G+ RYRK Sbjct: 482 V-GSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 516 >gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602] gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602] Length = 934 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 119/681 (17%), Positives = 209/681 (30%), Gaps = 168/681 (24%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 T+ G Y + A + D PV+ D V+ Q LK LE+ V N F+ Sbjct: 380 TEAGKAAY------LPVAHDYLDAPVQ---LDRDEVLKQ-LKPILEDEKQLKVGQNLKFD 429 Query: 77 RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 R VL DI + +L + + A + K +E+ + Sbjct: 430 RGVL---LRYDIELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSFEEIAGKGK 486 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQ 183 T + A Y D VT ++ + L P + E Sbjct: 487 NQLTFNQI----------ALEQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEM 536 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + I G +D + ++ + + +L+ + L + ++L+ L Sbjct: 537 PLVPVLSHIERTGVLIDQNILAAHSKELAIRLNELENKAHELA-EEPFNLSSTKQLQAIL 595 Query: 244 FLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + + L + T +T + VL+ P + R Sbjct: 596 YEKQKLPILKKTPGGAPSTNEEVLAELALDYPLPKVILEYR------------------- 636 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 G ++ P P+ R H Q +T +SDP+ I Sbjct: 637 ------------GLAKLKSTYTDKLPLMINPQSGRVHTSYHQAVTATGRLSSSDPNLQNI 684 Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R IA + ++ AD + IE R++A ++ ++ LKAF G+D++ T A Sbjct: 685 PVRNDEGRRIRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFAEGKDIHRATAA 744 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F +V+ +QR K + L Y A ++ + Sbjct: 745 EVFGTPLEKVSGEQRRSAKAINFGLIYGMSAF---GLSRQLNIPRKESQ----------- 790 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + R + + + Q E Sbjct: 791 ---------------------------------RYMDLYFERYPGVLEYMERTRTQASEQ 817 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTY 593 G RR L LP +S R G R+ +N Sbjct: 818 GYVETLDGRR---------------LYLPDIKSSNAMRRKGAERAAINAPM--------- 853 Query: 594 GGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDEFNAS 645 Q + DI+ M++ I++ VHDE+V E D E + Sbjct: 854 ---------QGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEVHKDDVEVASE 904 Query: 646 MLYHLMTSNPSWAKGLPLKAE 666 + +LM ++ + A +PLK + Sbjct: 905 KIRNLMEASMTLA--VPLKVD 923 >gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183] gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175] gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183] gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175] Length = 921 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63 +D + Y ++ +F + HD V + L+ LE+ Sbjct: 346 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLED 403 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 + V N ++ ++L N I + +L N + S G ALK Sbjct: 404 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 460 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +E+ + K T + Y D +T + + L P K Sbjct: 461 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 510 Query: 182 EQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E EL + I +G +D L + + + L+++ + G Sbjct: 511 EAELAAMFIEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 569 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 570 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 625 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P + R H Q Sbjct: 626 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 658 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA +G+K++ AD + IE R++A ++ + LKA Sbjct: 659 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 718 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F +VT +QR K + L Y A +A + + Sbjct: 719 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 775 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + R+M+E Sbjct: 776 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 797 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580 +A + + R+ L LP R R G R+ + Sbjct: 798 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 836 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633 N Q + DI+ + M+N T+ +++ VHDE+V Sbjct: 837 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 878 Query: 634 CETP-DTDEFNASMLYHLMTSN 654 E D E + LM Sbjct: 879 FEVDADKAEALKKTICTLMAQA 900 >gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185] gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185] Length = 935 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63 +D + Y ++ +F + HD V + L+ LE+ Sbjct: 360 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLED 417 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 + V N ++ ++L N I + +L N + S G ALK Sbjct: 418 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 474 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +E+ + K T + Y D +T + + L P K Sbjct: 475 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 524 Query: 182 EQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E EL + I +G +D L + + + L+++ + G Sbjct: 525 EAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 583 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 584 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 639 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P + R H Q Sbjct: 640 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 672 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA +G+K++ AD + IE R++A ++ + LKA Sbjct: 673 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 732 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F +VT +QR K + L Y A +A + + Sbjct: 733 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 789 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + R+M+E Sbjct: 790 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 811 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580 +A + + R+ L LP R R G R+ + Sbjct: 812 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 850 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633 N Q + DI+ + M+N T+ +++ VHDE+V Sbjct: 851 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 892 Query: 634 CETP-DTDEFNASMLYHLMTSN 654 E D E + LM Sbjct: 893 FEVDADKAEALKKTICTLMAQA 914 >gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223] gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223] Length = 921 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63 +D + Y ++ +F + HD V + L+ LE+ Sbjct: 346 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLED 403 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 + V N ++ ++L N I + +L N + S G ALK Sbjct: 404 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 460 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +E+ + K T + Y D +T + + L P K Sbjct: 461 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 510 Query: 182 EQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E EL + I +G +D L + + + L+++ + G Sbjct: 511 EAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 569 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 570 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 625 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P + R H Q Sbjct: 626 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 658 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA +G+K++ AD + IE R++A ++ + LKA Sbjct: 659 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 718 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F +VT +QR K + L Y A +A + + Sbjct: 719 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 775 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + R+M+E Sbjct: 776 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 797 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580 +A + + R+ L LP R R G R+ + Sbjct: 798 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 836 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633 N Q + DI+ + M+N T+ +++ VHDE+V Sbjct: 837 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 878 Query: 634 CETP-DTDEFNASMLYHLMTSN 654 E D E + LM Sbjct: 879 FEVDADKAEALKKTICTLMAQA 900 >gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195] gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195] gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678] Length = 921 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 116/682 (17%), Positives = 204/682 (29%), Gaps = 168/682 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALEN 63 +D + Y ++ +F + HD V + L+ LE+ Sbjct: 346 VDTETTSLD-YM-VAELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLED 403 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 + V N ++ ++L N I + +L N + S G ALK Sbjct: 404 PKLKKVGQNLKYDISILA---NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 460 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +E+ + K T + Y D +T + + L P K Sbjct: 461 KNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLHQHLWPRLEK 510 Query: 182 EQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E EL + I +G +D L + + + L+++ + G Sbjct: 511 EAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIA-GEK 569 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 570 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 625 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P + R H Q Sbjct: 626 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTNYHQANAAT 658 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA +G+K++ AD + IE R++A ++ + LKA Sbjct: 659 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKA 718 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F +VT +QR K + L Y A +A + + Sbjct: 719 FAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRHE 775 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + R+M+E Sbjct: 776 AQTYIDT-----YFARYPGVLRYMEET--------------------------------- 797 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYL 580 +A + + R+ L LP R R G R+ + Sbjct: 798 ----RAGAADLGYVSTLFGRR-----------------LYLPEIRDRNAMRRQGAERAAI 836 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633 N Q + DI+ + M+N T+ +++ VHDE+V Sbjct: 837 NAPM------------------QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELV 878 Query: 634 CETP-DTDEFNASMLYHLMTSN 654 E D E + LM Sbjct: 879 FEVDADKAEALKKTICTLMAQA 900 >gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4] gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4] Length = 901 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 109/589 (18%), Positives = 194/589 (32%), Gaps = 90/589 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 DL + Y E ++ +F HD + L+ L+++ Sbjct: 328 DLETNSLD-YIE-AEIVGLSFAIKPKEAAYVPLAHDYDAAPLQLAREGVLARLQPLLQDS 385 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + V N F+R VL N I + +L + S ALK + Sbjct: 386 NRGKVGQNLKFDRNVLA---NYGIELEGIRHDSMLESYVLHSTASRHNMDSLALKYLQRS 442 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 +E+ + K P ++ Y D + ++ P +E Sbjct: 443 TISYEEVAGKGAKQ----------LPFNQVPIDKATRYAAEDADICLQLHHYFWPRLQQE 492 Query: 183 QELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L L Q + G +D + + K++QE L G Sbjct: 493 EALCRLYQELEIPLIPVISRMERNGVQIDATQLKAHSAELTARLEKIEQEAFELA-GEPF 551 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++++ L+ + L + T T T + VL P + R Sbjct: 552 NLASPKQIQAILYDKLKLPITRKTPTGQPSTAETVLQELALDYPLPQLLLEYR------- 604 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 S+ P Q PR R H Q +T Sbjct: 605 ------------------------ALSKLKSTYTDRLPLQVNPRTGRVHTSYHQAVTATG 640 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA G L+ AD + IE R++A ++ ++ L AF Sbjct: 641 RLSSSDPNLQNIPIRSAEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAF 700 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 E GED++ T A F VT +QR K + L Y A +A G++ + Sbjct: 701 EAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSA---HGLAQQLGISRSAA 757 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 H + E + + + + A + ++ T R + + HSR ++ N Sbjct: 758 QHYI------ERYFHRYPGVKAYMDAICQQARQKGYVETLFGR-RLYLPEIHSRQAQRRN 810 Query: 523 ELHQAFEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVY 570 + + G A KR + +++K +N +++ LV+ Sbjct: 811 QAERMAINAPMQGTAADIIKRAMLRADQWLQKQGSNARMIMQVHDELVF 859 >gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661] gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661] Length = 928 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 103/562 (18%), Positives = 190/562 (33%), Gaps = 79/562 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ + V N ++R VLK N DI + +L + + S Sbjct: 402 ERLKPLLEDPALLKVGQNLKYDRGVLK---NYDIELQGIKFDTMLESYALSSVGSRHDMD 458 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + + K +E+ + K T + Y D VT ++ Sbjct: 459 TLSSRWLNHKTVSFEEIAGKGKKQLTFNQI----------DLEQAAHYAAEDADVTLQLH 508 Query: 173 KRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P KEQ L + I G +D + ++ + + +L+Q+ Sbjct: 509 LKMWPELEKEQGPKEVFENIEMPLLTVISRIERNGVLIDQGILAAHSKELTIRLAELEQK 568 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L G + ++L+T LF + G+ T +T + VL+ P + Sbjct: 569 AHELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVIL 627 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 NR G ++ P P R H Sbjct: 628 ENR-------------------------------GLAKLKSTYTDKLPLMINPITGRVHT 656 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IAS+G K+V AD + IE R++A + Sbjct: 657 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIASKGHKIVAADYSQIELRIMAHL 716 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G D++ T A F +A +VT +QR K + L Y A ++ Sbjct: 717 SQDKGLLSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINFGLIYGMSAF---GLS 773 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + +E +M E+ + A E ++ T + + Sbjct: 774 RQLNIGAGEAKKYMDL-----YFERYPGVLEYM-ESTRQQAAEKGYVST-LDGRRLYLPD 826 Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ + +A G A II + V + ++ +++ LV+ Sbjct: 827 INASNAMRRKAAERAAINAPMQGTAADIIKKAMIAVDGWLTPQSAPDVKMIMQVHDELVF 886 Query: 571 RDVGNNRSYLNTTTRQLTREYT 592 + R L Sbjct: 887 EVKTSEVEAATAKIRDLMENSM 908 >gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] Length = 911 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 122/687 (17%), Positives = 215/687 (31%), Gaps = 168/687 (24%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77 K G Y + A + D P +L + Q L L + + V N +++ Sbjct: 358 KAGEAAY------LPVAHDYPDAPEQL----SLEFVMQKLGPILADANKAKVGQNLKYDK 407 Query: 78 TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 +VL N ++ +L N + + ALK K +++ + K Sbjct: 408 SVLA---NAGYELNGIKFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEDIAGKGKK 464 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQE 184 T + Y D +T + + L P E Sbjct: 465 QLTFNQI----------ELDKAAPYAAEDADITLRLHEVLWPKIEADEKLKSVFEDIEMP 514 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + I G +D ++ +Q + +L++E + G + ++L+ LF Sbjct: 515 LVSVISDIERTGVAIDSSMLGAHSQRLGERLIELEKEAFEIA-GEPFNLSSPKQLQVLLF 573 Query: 245 LETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + L + T T + VL P + +R Sbjct: 574 EKLELPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIEHR-------------------- 613 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 G S+ P + R H Q +T ++DP+ I Sbjct: 614 -----------GLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIP 662 Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R IA++G K+V AD + IE R++A ++ ++ L AF G D++ T A Sbjct: 663 IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAE 722 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V VT D R K + L Y A +A + + H + + + Sbjct: 723 VFGVDLDDVTTDMRRKAKAVNFGLIYGMSAF---GLARQLDVPRHEAQHYID-----KYF 774 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 E +M E E A E+ ++ Sbjct: 775 ERFPGVLEYM-ETTREKAAENGYV------------------------------------ 797 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYG 594 + I R+ LP + R G R+ +N Sbjct: 798 ETIFGRRLH-----------------LPEINARNGARRKGAERAAINAPM---------- 830 Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLTVHDEIVCETP-DTDEFNASM 646 Q + DI+ + M++ + Y+ +++ VHDE+V E D E Sbjct: 831 --------QGTAADIIKKAMLSVNQWVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQ 882 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM+ S +PL E E + + Sbjct: 883 ICELMSQAAS--LDVPLIVEADEGENW 907 >gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9] gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9] Length = 937 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 105/626 (16%), Positives = 194/626 (30%), Gaps = 94/626 (15%) Query: 5 FIDFETRSPI---DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV 56 ++D T + + D + Y ++ +F ++ HD + + Sbjct: 350 WLDTLTAADVVAFDTETDSLD-YM-TANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRD 407 Query: 57 -----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSAL 109 LK LE+ V N F+ ++L DI + +L N + Sbjct: 408 WVLAQLKPLLEDPAQNKVGQNLKFDMSILARY---DINMQGIKYDTMLESYVFNSVVGRH 464 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 AL+ K +E+ + K T + + G Y D +T Sbjct: 465 DMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI----------DLDVAGPYAAEDADITL 514 Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + L E L + I G +D L + + +L Sbjct: 515 RLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDEL 574 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAI 274 + + + + ++L+ LF + GL + +T + VL P Sbjct: 575 ETKAYEIA-EQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPLPK 633 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + G ++ P P R Sbjct: 634 ILLE-------------------------------YRGLAKLKSTYTDKLPKMVNPSTGR 662 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q +T +SDP+ I +R IA G K++ D + IE R++ Sbjct: 663 VHTSYHQAVTATGRLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIM 722 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++G++ L+AF+ G+D++ T A + VT +QR K + L Y A Sbjct: 723 AHLSGDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAF--- 779 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A + N + + + E+ HA E ++ T R + Sbjct: 780 GLAKQLDMGRNEAQDYMN------VYFERYPGVLEYMESTRIHASEQGYVETLFGR-RLY 832 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 SR +A G A II R V +++ + L++ Sbjct: 833 LPDIKSRNGIRRKAAERAAINAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDE 892 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTY 593 LV+ + ++ R+L Sbjct: 893 LVFEVQESELDAVSADVRRLMELAAE 918 >gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227] gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227] Length = 928 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNPLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83] Length = 928 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNPLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379] gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379] Length = 893 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 121/694 (17%), Positives = 216/694 (31%), Gaps = 169/694 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL-----KEAL 61 IDL + D ++ +F F DH H +P+ L + L Sbjct: 317 IDLETTSLDP--RDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPRDLVLERLRPQL 374 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLS 119 E+ T + N F+ VL + + +LA PS AL+ Sbjct: 375 ESPSPTKIGQNIKFDMQVLAT---NGVSLSGIRFDTMLASYVLNPSRQGHGLDALALEHL 431 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +M E+ T +N + Y D T + ++ PL Sbjct: 432 GHRMISYAEV--------TGSGKTQKN--FSQVEIETASRYACEDADATWLLHRKFSPLL 481 Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 ++ E L + + + G +D+ L L++ L+ + L G Sbjct: 482 AENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMATLEGRIFQLA-GT 540 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF L T+ +T VLSS + A Sbjct: 541 TFNLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEEHEIA----------- 589 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R L + G S+ P PR R H +Q +T Sbjct: 590 --------------------RLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVT 629 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R IA G ++ AD + IE RVLA ++G+ Sbjct: 630 STGRLSSSDPNLQNIPIRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFC 689 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE ED++ T + F + P VT + R K + + Y G+ + A G+ Sbjct: 690 QAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQGSFSL---ARQLGIAR 746 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 T + A++++H++ Sbjct: 747 KTAEEFI-----------------------------------------SAYKERHAKAVG 765 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ + E+ + I +R + + + R+ R+ Sbjct: 766 FLDDCIRQAEE--QGFVTTILGRRLPIADITSTNG---------NIRAFA------QRNA 808 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 +N +Q + DI+ M+ +++ VHDE+V Sbjct: 809 INYP------------------IQGSAADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELV 850 Query: 634 CETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 E + + +L M+ +PLK + Sbjct: 851 FEVREDELLAMELLVEEEMSRAVE--LRIPLKVD 882 >gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] Length = 929 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 106/643 (16%), Positives = 194/643 (30%), Gaps = 156/643 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N ++ +VL I + +LA N + Sbjct: 403 EQLKPILEDDAQAKVGQNLKYDASVLARY---GIEMKGIKHDTMLASYVYNSVGGKHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ +++ + K T + Y D VT + Sbjct: 460 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELDEASPYAAEDADVTLRLH 509 Query: 173 KRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQE 221 RL ++++L + Q I G +D +Q + +L+Q+ Sbjct: 510 NRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLSAQSQEIAQRLDELEQK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277 + + ++L+ LF + GL + T +T + VL P + Sbjct: 570 AYEIA-EQEFNMNSPKQLQAILFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPKMINPETGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA G K++ D + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+Q L AF+ G+D++ T A QV+ +QR K + L Y A +A Sbjct: 718 SGDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAF---GLA 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + + + Sbjct: 775 KQLGIPRGEAQDYMN-----------------------------------------KYFE 793 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + + A + I +R +P + R+ + R Sbjct: 794 RYPGVMQYMEDTRSAA--ADQGYVETIFGRRLHLPEI--------------KSRNGMRRK 837 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 R+ +N Q + DI+ + M+ + ++ Sbjct: 838 A-AERAAINAPM------------------QGTAADIIKKAMLLVDEWIQAEGQGRVKLL 878 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 + VHDE+V E ++ + LM S +PL AE Sbjct: 879 MQVHDELVFEVEESSLAEIESKVQQLMESAAD--LDVPLVAEA 919 >gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395] gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27] gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395] gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395] gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27] Length = 934 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924 >gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] Length = 911 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 121/687 (17%), Positives = 210/687 (30%), Gaps = 168/687 (24%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77 K G Y + A + P +L + Q L L + + V N +++ Sbjct: 358 KAGEAAY------LPIAHDYPGAPEQL----SLEFVMQKLGPILADENKAKVGQNLKYDK 407 Query: 78 TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 +VL N ++ +L N + + ALK K +++ + K Sbjct: 408 SVLA---NAGYELNGIKFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEDIAGKGKK 464 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQE 184 T + Y D +T + + L P E Sbjct: 465 QLTFNQI----------ELEKAAPYAAEDADITLRLHQVLWPKLEADEKLKSVFEDIEMP 514 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + I G +D + T +Q + +L++E + G + ++L+ LF Sbjct: 515 LVSVISDIERTGVAIDSNMLATHSQRLGERLLELEKEAFEIA-GEPFNLSSPKQLQVLLF 573 Query: 245 LETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + L + T T + VL P + +R Sbjct: 574 EKLELPVIKKTPKGAPSTAEEVLQELAHDYPLPKVIIEHR-------------------- 613 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 G S+ P R R H Q +T +SDP+ I Sbjct: 614 -----------GLSKLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDPNLQNIP 662 Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R IA++G K+V AD + IE R++A ++ ++ L AF G D++ T A Sbjct: 663 IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVHSATAAE 722 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT D R K + L Y A +A + + H + + + Sbjct: 723 VFGVELEEVTSDMRRKAKAVNFGLIYGMSAF---GLARQLDVPRHEAQHYID-----KYF 774 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 E +M E E A E+ ++ Sbjct: 775 ERFPGVLEYM-ETTREKAAENGYV------------------------------------ 797 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYG 594 + I R+ LP + R G R+ +N Sbjct: 798 ETIFGRRLH-----------------LPEINARNGARRKGAERAAINAPM---------- 830 Query: 595 GKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETP-DTDEFNASM 646 Q + DI+ + M++ +++ VHDE+V E + E Sbjct: 831 --------QGTAADIIKKAMLSVHAWVNQQAPNTVKLLMQVHDELVFEIKTECTEQYTKQ 882 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 + LM+ +PL E E + Sbjct: 883 ICELMSQAAQ--LDVPLIVEADEGDNW 907 >gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424] gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424] Length = 966 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 129/694 (18%), Positives = 228/694 (32%), Gaps = 153/694 (22%) Query: 7 DFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMP-QVLKEAL 61 D ET S P D T GI +G V +P + + AL Sbjct: 381 DTETTSLEPKDTTLVGIG----------CCWGEQPTEVAYIPLNHTEGEQLPQEEVLSAL 430 Query: 62 ----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 E+ + V N+ F+R VL N I + + +LA P L + E Sbjct: 431 SVILESENYPKVFQNTKFDRIVL---LNKGIKLAGVVFDTMLASYVLRPELSHKLSDLCE 487 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + K ++L + + + YC D T + + Sbjct: 488 RY-LENIKALNYRDL------------EIPKTQTIAHLSLEKVAHYCGMDAYATFMLVPK 534 Query: 175 L-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L E L EQ L + + + G C+D A + L+Q ++ + L+ + Sbjct: 535 LIAELKQAPDLYELLLKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAY 594 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF + GL+ + Sbjct: 595 E-AAGESFNLGSPKQLSEILFEKLGLNKRKSRK--------------------------- 626 Query: 284 SRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ + +E + D + L+ ++ P P+ R H + +Q Sbjct: 627 LKTGYSTDHATLEKLQGDHPIIDYILEHRTLAKLKSTYVDALPALVHPQTGRVHTDFNQA 686 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T +S+P+ I S +R I + LV AD + IE R+LA ++ E Sbjct: 687 VTTTGRLSSSNPNLQNIPIRTEFSRQIRKAFITQDDWLLVSADYSQIELRILAHLSQEPV 746 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+A++ +D++ T F+ +T ++R+IGK + + Y GA Q+ A + GL Sbjct: 747 LLEAYQNYQDVHRVTAQLLFDKEV--ITSEERSIGKTINFGVIYGMGA---QRFARSMGL 801 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + ++ E + AI F+ T Sbjct: 802 SFQEGKDFID------KYHQKYARVFEYLERVKKEAIAKGFVTT---------------- 839 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 I R+R Y + + L R ++ ++ Sbjct: 840 --------------------IKGRRR------YFEFFDD----KLNHLRGEKPENLDLDK 869 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIV 633 LN + QL R +Q S DI+ M+ ++L VHDE+V Sbjct: 870 LNLNYSDAQLLRAAANAP------IQGSSADIIKIAMVQLHEILQHYQARLLLQVHDELV 923 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + E + M + +PL + Sbjct: 924 FEIPPDEWEDLQVKIKDTMENAVK--LTVPLVVD 955 >gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10] gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10] Length = 934 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924 >gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80] gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80] Length = 906 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 488 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q+ Sbjct: 489 IHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLEQLEQKAY 548 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 549 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSY 636 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896 >gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] Length = 931 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 106/642 (16%), Positives = 191/642 (29%), Gaps = 156/642 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 LK LE+ V N ++ +VL +I + +LA N + Sbjct: 406 QLKPILEDDTQAKVGQNLKYDASVLARY---NIEMKGIKHDTMLASYVYNSVGGKHDMDS 462 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ +++ + K T + Y D VT + Sbjct: 463 LALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELDQASPYAAEDADVTLRLHN 512 Query: 174 RL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL E L + I G +D +Q + +L+Q+ Sbjct: 513 RLMANIEKDEQLKAIYEEIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELEQKA 572 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + ++L+ LF + GL + T +T + VL P + Sbjct: 573 YEIA-EQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R G ++ P P R H Sbjct: 632 YR-------------------------------GLAKLKSTYTDKLPKMINPETGRVHTS 660 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R IA G K++ D + IE R++A ++ Sbjct: 661 YHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 720 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L AF+ G+D++ T A QV+ +QR K + L Y A +A Sbjct: 721 GDKALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAK 777 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + + ++ Sbjct: 778 QLGIPRGEAQDYMN-----------------------------------------TYFER 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + + A + + I +R +P + R+ + R Sbjct: 797 YPGVMQYMEDTRSAAAE--QGYVETIFGRRLHLPEI--------------KSRNGMRRKA 840 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVL 626 R+ +N Q + DI+ + M+ +++ Sbjct: 841 -AERAAINAPM------------------QGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 881 Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 882 QVHDELVFEVQESALTEIESKVQQLMESAA--ALDVPLVAEA 921 >gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4] Length = 934 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924 >gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33] gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757] gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33] gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757] Length = 934 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924 >gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] Length = 906 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 488 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q+ Sbjct: 489 IHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAY 548 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 549 ELA-GKPFNVSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 636 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896 >gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] Length = 949 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 118/700 (16%), Positives = 221/700 (31%), Gaps = 176/700 (25%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S ++ D +I +F + H+ +P Sbjct: 375 DTETDSLNNI----------DARLIGMSFAIEPGKAAYIPLRHEYLDAPEQLPVNDVLAA 424 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ ++ + N F+R +++ N I ++ +L N + + Sbjct: 425 LKPILEDKNILKIGQNLKFDRGIME---NEGIELNGIHFDTMLESYVLNSVSNRHDMDTL 481 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A K + K +E+ + T + Y D +T + + Sbjct: 482 AEKHLNHKTTTFEEIAGKGKGQLTFNQI----------EVEQATLYAAEDADITLLLHQA 531 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + +G +D + +Q + ++++E Sbjct: 532 LYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLAEIEKETF 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + ++L+ LF + L + T T + VL + + Sbjct: 592 ALA-GQEFNLSSPKQLQEILFDKLQLPVIKKTPKGAPSTNEEVLEELAHSHELPRLILEH 650 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P + R H Sbjct: 651 R-------------------------------GLAKLKSTYTDKLPLMVNSKTKRVHTSY 679 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R IA EG K+V AD + IE R++A ++ Sbjct: 680 HQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHLSQ 739 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T + F + +VT +QR K + L Y A + Sbjct: 740 DKGLLDAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGV 799 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 E +A+ + E +P Sbjct: 800 -------------------ERREAQRYMDLYFERYP------------------------ 816 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + + +Q E G + GR L ++ Sbjct: 817 ----GVLDYMERTRKQASEQG-----------------------YVETLEGRRLYLPEIN 849 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627 + N R+ + +Q + DI+ + M+ A +++ Sbjct: 850 SK----NAIRRKASEREA-----INAPMQGTAADIIKKAMIAVDNWICNECPADVHMIMQ 900 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E ++ NA M++ LM S+ A +PLK E Sbjct: 901 VHDELVFEVRESYLENANIMIHKLMESSMELA--IPLKVE 938 >gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39] gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39] Length = 934 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 517 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 576 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 664 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R + R +Q + DI+ + M+ +++ Sbjct: 832 ------EITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924 >gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33] gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9] gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236] gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9] gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33] gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236] Length = 906 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 488 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 489 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 548 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 549 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 636 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896 >gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)] gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)] Length = 906 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 488 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 489 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 548 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 549 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 636 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896 >gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21] gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21] Length = 906 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 203/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 381 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 438 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A + +Y D VT + +R Sbjct: 439 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALQEAAQYAAEDADVTLRLHQR 488 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q+ Sbjct: 489 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAY 548 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 549 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 604 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 605 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 636 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 637 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 696 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 697 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 753 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 754 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 783 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 784 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 803 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 804 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 857 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 858 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 896 >gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] Length = 933 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 105/637 (16%), Positives = 200/637 (31%), Gaps = 149/637 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 LK LE+ ++ V N +++ V+ I + +L + + Sbjct: 408 LKPVLEDANLLKVGQNLKYDQGVMARY---GIELQGIAFDTMLESYDLDSVAGRHDMDSL 464 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + K +E+ + T + A Y D VT ++ + Sbjct: 465 AERHLNHKTITFEEIAGKGKSQLTFNQI----------ALEQATPYAAEDADVTLQLHLK 514 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P KE L + + G +D + +Q + + +L+++ Sbjct: 515 LWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDSNILGKHSQELAIRLDELEKKAH 574 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLTPQAIQVFNNRMR 282 G + ++L+ LF + L + T +L+ Q ++ Sbjct: 575 E-AAGEPFNLSSPKQLQAILFEKQKLPVVKKTPGGAPSTNEEVLAELSEQGFELPTI--- 630 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 L+ G ++ P P R H Q Sbjct: 631 ------------------------ILEHRGLAKLKSTYTDKLPQMINPATGRVHTSYHQA 666 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T +SDP+ I +R IA +G K+V AD + IE R++A ++G++ Sbjct: 667 VTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSGDKG 726 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F + VT +QR K + L Y A +A + Sbjct: 727 LLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMSAF---GLARQLNI 783 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + +E +M+ + A Sbjct: 784 ARGEAQRYMDL-----YFERYPGVLEYMERTRQQAA------------------------ 814 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 Q + +T++ +R +P ++ + R G R Sbjct: 815 -------EQGYVETLD-------GRRLYLPEIHSRN---------------GMRRKGAER 845 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHD 630 + +N Q + DI+ M++ +++ VHD Sbjct: 846 AAINAPM------------------QGTAADIIKRAMISVDAWLLQQKEPLVRMIMQVHD 887 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E ++ E + LM + A +PLK + Sbjct: 888 ELVFEVHESVIEQTVEKVRELMEQSLELA--VPLKVD 922 >gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457] gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457] Length = 851 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 326 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 383 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 384 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 433 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 434 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 493 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 494 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 549 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 550 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 581 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 582 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 641 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 642 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 698 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 699 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 728 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 729 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 748 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 749 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 802 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 803 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 841 >gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541] gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541] Length = 934 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 120/673 (17%), Positives = 212/673 (31%), Gaps = 161/673 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 A + + D PV+ D V+ V+K LEN + + N ++ VL+ Sbjct: 381 AGHAAYLPIGHDYLDAPVQ---LSLDDVI-AVMKPILENEKIGKIGQNLKYDAEVLE--- 433 Query: 85 NLDIPIHRWICTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 N I + +L A + + K +E+ + K T Sbjct: 434 NYGIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTFN 493 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------- 190 + Y D VT + + L P +E +L ++ Q Sbjct: 494 QI----------PLEQAANYAAEDADVTLLLHQALFPQLEEEPKLAHVFQNIEMPLVPVL 543 Query: 191 -TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + +G +D ++I+ +L+++ L G + ++L+T LF + L Sbjct: 544 VRMERKGVLIDAPTLAAQSKIITARLAELEKQAFELA-GEEFNLASPKQLQTILFEKLQL 602 Query: 250 HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + T + T + VL + +R A Sbjct: 603 PVIKKTPSGAASTNEEVLEELALNHELPKLLLEHRSLA---------------------- 640 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 + P P+ R H Q +T + DP+ I Sbjct: 641 ---------KLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEE 691 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IA +G K++ AD + IE R++A ++ ++ L AF G+D++ T A F V Sbjct: 692 GRRIRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVP 751 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 QVT DQR K + L Y A +A G+ A+ Sbjct: 752 LDQVTSDQRRSAKAINFGLIYGMSAF---GLARQLGIPRGE----------------AQR 792 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + E +P + + Q E G Sbjct: 793 YMDLYFERYP----------------------------GVLRYMENTRLQASEQG----- 819 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 + GR L D+ ++ N R+ Sbjct: 820 ------------------YVETLEGRRLYLADIKSS----NGMRRKAAEREA-----INA 852 Query: 601 IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTS 653 +Q + DI+ + M+ K D+++ VHDE+V E +++ E + + LM Sbjct: 853 PMQGTAADIIKKAMIAVDHWLQTEKPEADMLMQVHDELVFEVKESELEKVQAKVQELMEQ 912 Query: 654 NPSWAKGLPLKAE 666 + +PLK E Sbjct: 913 SMK--LDVPLKVE 923 >gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320] gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320] Length = 932 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 114/700 (16%), Positives = 216/700 (30%), Gaps = 176/700 (25%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S ++ D +I +F + HD +P Sbjct: 358 DTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVLTA 407 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ + + N F+R +++ N I ++ +L N + S Sbjct: 408 LKPILEDKTILKIGQNLKFDRGIME---NEGIELNGIYFDTMLESYVLNSVSSRHDMDTL 464 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A K + K +E+ + T + Y D +T + + Sbjct: 465 AEKHLNHKTTTFEEIAGKGKGQLTFNQI----------EVEQATLYAAEDADITLLLHQA 514 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + +G +D + +Q + ++++E Sbjct: 515 LYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETF 574 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + ++L+ LF + L + T T + VL + + + Sbjct: 575 ALA-GQEFNLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHELPRLILEH 633 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P + R H Sbjct: 634 R-------------------------------GLAKLKSTYTDKLPLMVNSKTKRVHTSY 662 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R IA +G K+V AD + IE R++A ++ Sbjct: 663 HQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHLSQ 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T + F + +VT +QR K + L Y A + Sbjct: 723 DKGLLDAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFGLIYGMSAFGLSQ---Q 779 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + Sbjct: 780 IGVERKEAQ--------------------------------------------RYMDLYF 795 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + + + + +Q + G + GR L ++ Sbjct: 796 ERYPGVLDYMERTRKQASQQG-----------------------YVETLDGRRLYLPEIN 832 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLT 627 + N R+ + +Q + DI+ + M+ +++ Sbjct: 833 SK----NAIRRKASEREA-----INAPMQGTAADIIKKAMIAVDNWICHECPDDVHMIMQ 883 Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E ++ E +M++ LM S+ A +PLK E Sbjct: 884 VHDELVFEVRESYLEKANAMIHKLMESSMELA--IPLKVE 921 >gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587] gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2] gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587] gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2] Length = 886 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 112/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 361 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 418 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 419 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 468 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 469 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 528 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 529 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 584 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 585 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 616 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 617 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 676 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 677 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 733 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 734 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 763 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 764 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 783 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 784 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 837 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL A+ Sbjct: 838 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVADA 876 >gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51] gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51] Length = 930 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 405 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 462 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 463 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 512 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q+ Sbjct: 513 IHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAY 572 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 573 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 628 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 629 ----------------------------IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSY 660 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 661 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 720 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 721 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 777 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 778 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 807 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 808 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 827 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 828 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 881 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 882 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 920 >gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] Length = 931 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 108/643 (16%), Positives = 195/643 (30%), Gaps = 156/643 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N ++ +VL I + +LA N + Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY---GIEMKGIKHDTMLASYVYNSVGGKHDMD 461 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ +++ + K T + Y D VT + Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELEQASPYAAEDADVTLRLH 511 Query: 173 KRL-------EPL----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 RL E L E L + I G +D +Q + + +L+Q+ Sbjct: 512 NRLLANIEQDEKLKTIYEEVEVPLVPVLSRIERTGVLIDDMKLAAQSQEIALRLDELEQQ 571 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277 + + ++L+ LF + GL + T +T + VL P + Sbjct: 572 AFEIA-EQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLIL 630 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P R H Sbjct: 631 EYR-------------------------------GLAKLKSTYTDKLPKMINPETGRVHT 659 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA G K++ D + IE R++A + Sbjct: 660 SYHQAVTATGRLSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHL 719 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L AF+ G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 720 SGDKALLDAFQQGKDIHAATAAEIIGVDIEQVSAEQRRRAKAVNFGLIYGMSAF---GLA 776 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + + + Sbjct: 777 KQLGIPRGEAQQYMD-----------------------------------------TYFE 795 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + + A + + I +R +P + R+ + R Sbjct: 796 RYPGVMQYMEDTRSAAAE--QGYVETIFGRRLHLPEI--------------KSRNGMRRK 839 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 R+ +N Q + DI+ + M+ + ++ Sbjct: 840 A-AERAAINAPM------------------QGTAADIIKKAMLLVDEWIESQGQGRVKLL 880 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 + VHDE+V E ++ + LM S +PL AE Sbjct: 881 MQVHDELVFEVQESALAEIESKVQELMESAAQ--LDVPLIAEA 921 >gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061] gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 110/693 (15%), Positives = 211/693 (30%), Gaps = 167/693 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVEL---------WDCVHDPVMPQVL---KEALE 62 D G+ ++ + FA + VE D + +VL K LE Sbjct: 353 DTETDGLDTLTANLVGMSFAIAAGESEVEAAYLPLAHDYLDAPQQLDLHEVLTALKPLLE 412 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120 + ++ + N F+R VL D+ + + +L N + A + S Sbjct: 413 DANLPKIGQNLKFDRGVLARY---DVVLEGIVFDTMLESYVLNSVAGRHDMDSLAERHLS 469 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K +++ + K T + +Y D VT + + + P + Sbjct: 470 YKTTTFEDIAGKGKKQLTFNQI----------PLEEAAKYAAEDADVTLRLHQAMYPQLA 519 Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + + G +D ++ + V +L++ +L Sbjct: 520 SAEVLKKVFQKIEMPLVPVLSRMERTGVLIDARTLAEHSREITVRLDELEKSAYALAD-E 578 Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF + L + + +T + VL + Sbjct: 579 EFNLASPKQLQVILFEKMKLPVLKKTPNGAPSTNEEVLEELAENHELP------------ 626 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L+ G ++ P P +R H Q +T Sbjct: 627 -------------------RVILEHRGLAKLKSTYTDKLPQMVNPLTNRVHTSYHQAVTA 667 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + DP+ I +R IA G +++ AD + IE R++A ++ ++ L Sbjct: 668 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPTGYRIMAADYSQIELRIMAHLSQDKGLLA 727 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F V VT +QR K + L Y A ++ G+ Sbjct: 728 AFAQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMSAF---GLSRQLGIPRG 784 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + R + Sbjct: 785 EAQ--------------------------------------------RYMDLYFERYPGV 800 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 N + + +Q E+G + GR L ++ + Sbjct: 801 LNYMERTRQQAAEHG-----------------------FVETLEGRRLYLPEIKS----R 833 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 N R+ + +Q + DI+ M+ K +++ VHDE+V Sbjct: 834 NAMRRKASEREA-----INAPMQGTAADIIKLAMIAVDDWIVSEKPNVRMIMQVHDELVF 888 Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E +++ + LM + +PLK + Sbjct: 889 EVHESELAMAEQKIRALMEQSML--LDVPLKVD 919 >gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385] gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385] Length = 934 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 202/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 409 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 466 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 467 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 516 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q+ Sbjct: 517 IHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAY 576 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 577 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 633 ----------------------------IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSY 664 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 665 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 724 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 725 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 781 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 782 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 811 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 812 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 831 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 832 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 885 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 886 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 924 >gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 96/540 (17%), Positives = 172/540 (31%), Gaps = 79/540 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N ++ +VL I + +LA N + Sbjct: 401 EQLKPILEDGSRAKVGQNLKYDASVLARY---GIDMRGIKFDTMLASYVYNSVAGKHDMD 457 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ +++ + K T + Y D VT + Sbjct: 458 SLALRFLQHSCISFEQVAGKGKKQLTFNQI----------DLEQAAPYAAEDADVTFRLH 507 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +RL+ E L + I G +D +Q + + L+Q+ Sbjct: 508 QRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGVLIDDMKLSAQSQEIALRLDALEQQ 567 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+ LF + GL + T +T + VL P ++ Sbjct: 568 AFDIA-GQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPEKIL 626 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P R H Sbjct: 627 EYR-------------------------------GLAKLKSTYTDKLPKMINPTTGRVHT 655 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R +A G K++ D + IE R++A + Sbjct: 656 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAIDYSQIELRIMAHL 715 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L+AF+ G+D++ T A V +QVT +QR K + L Y A +A Sbjct: 716 SGDRALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNFGLIYGMSAF---GLA 772 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + T E + + + E + G + Sbjct: 773 KQLGIPRGEAQQYMDT--YFERYPGVMQYMEDTRSIAAEQGYVETIFGRRL-----HLPE 825 Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 SR +A G A II + V + + + L++ LV+ Sbjct: 826 IQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDDWIQTEGQGRVKLLMQVHDELVF 885 >gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] Length = 890 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 201/641 (31%), Gaps = 154/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 365 QLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 422 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + A +Y D VT + +R Sbjct: 423 ALRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQR 472 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G +D L +Q + + +L+Q Sbjct: 473 IHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAY 532 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 533 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL--- 588 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 +++ G ++ P P R H Sbjct: 589 ----------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 620 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 621 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 680 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 681 DQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 737 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P V + Sbjct: 738 LGIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTR 767 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++L + I R+ LP Sbjct: 768 SRAAQL------------GYVETIFGRRLH-----------------LP----------- 787 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627 T+R R +Q + DI+ + M+ +++ Sbjct: 788 ------EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQ 841 Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E ++ + LM S A +PL AE Sbjct: 842 VHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 880 >gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82] Length = 928 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] Length = 912 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 129/699 (18%), Positives = 210/699 (30%), Gaps = 174/699 (24%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL-------- 57 D ET S Y D ++ A H P P L Sbjct: 338 DLETSSLN---------YM-DAEIVGVALAVGAGEAAYVPLAHEGPDTPTQLDRDRVLAA 387 Query: 58 -KEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110 K LE+ D V N ++ +VL D + ++ +R + ALK Sbjct: 388 LKPLLEDPDRAKVGQNLKYDMSVLARYDIHLEGVAYDTMLESYVLDSTASRHDMDSLALK 447 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +G A +G + I P + A Y D +T Sbjct: 448 YLGRATVKYEDVCGKGAKQI-----------------PFAQVAVETATRYAGEDADITLR 490 Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P E L + + G VD AL + + L+ Sbjct: 491 LHQTLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTELAEGMAALE 550 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 Q G + ++++ LF GL + T S + Sbjct: 551 QRAHEEAEG-PFNLSSPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEE---------- 599 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 A+R L R L + ++ P P+ R H Sbjct: 600 --LAARGYELP--------------RLILAYRSLAKLKTTYTDKLPRLIHPKTGRVHTSY 643 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + +SDP+ I +R +A G KL+ AD + +E R++A ++G Sbjct: 644 HQAVAATGRLSSSDPNLQNIPVRTAEGRRIRKAFVAEPGCKLLAADYSQVELRIMAHLSG 703 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ +AF G D++ T A F +AP +V +QR K + L Y A +A Sbjct: 704 DEGLRQAFAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINFGLIYGMSAY---GLARQ 760 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + E +P VK+ + Sbjct: 761 LGIERGEAQA----------------YVDRYFERYP--------------GVKEYMDRTR 790 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + AR+R V ++ GR L ++ Sbjct: 791 AE-----------------------ARERGYVETLF--------------GRRLYLPEI- 812 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 N RQ REY +Q + D++ M+ + +V+ V Sbjct: 813 ------NARNRQ-RREYAER-TAINAPMQGTAADLIKRAMVAVDAWLTEAHSKARMVMQV 864 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P D A L M + A +PL+ + Sbjct: 865 HDELVLEVPAADVPAVAEGLRERMQAAGELA--VPLEVD 901 >gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185] gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIESGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALDEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39] gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI39] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143] gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLQYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101] gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 116/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+ LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQNILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75] gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5' exonuclease [Escherichia coli O127:H6 str. E2348/69] gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLGYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D E A ++ LM Sbjct: 887 EVHKDDLEAVAKKIHQLME 905 >gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581] gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581] Length = 922 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 116/684 (16%), Positives = 204/684 (29%), Gaps = 164/684 (23%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVM-PQVLKEA 60 D E DL + Y E ++ + HD + Q + EA Sbjct: 342 DCEAFC-FDLETTSL-SYME-ADIVGVGLALEPGEAAYIPLAHDYLDAPEQLDRQAVLEA 398 Query: 61 LE----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA 115 L + + N ++ +VL + T++ + + A Sbjct: 399 LAPLWADAGKAKIGQNLKYDISVLARHGHEVAGP--LHDTMLESYVLDSTATRHDMDSLA 456 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LK +K +++ + K T + A Y DV +T + + L Sbjct: 457 LKYLGEKTVSFEDIAGKGAKQLTFNQI----------ALEQAAPYACEDVDITLRLHREL 506 Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P L + E+ L + + G +D H ++ + +L+Q Sbjct: 507 RPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPERLHEQSRELGERIRELEQRAHE 566 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L LF E + + T T + VL P + +R Sbjct: 567 LA-GREFNLGSPKQLGEILFEEQKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVIMEHR 625 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P P R H Sbjct: 626 -------------------------------GFSKLRSTYTDKLPKLVDPTTGRLHTSYH 654 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +SDP+ I +R +A G +LV AD + IE R++A ++G+ Sbjct: 655 QAVTATGRLSSSDPNLQNIPIRTEQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLSGD 714 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF G D++ T A F VA +V+ +QR K + L Y A + Sbjct: 715 KGLLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSA---WGLGRQL 771 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + N + + D E A ED ++ T Sbjct: 772 HIERNQAQIYID------RYFDRYPGVARYMERIRAQAAEDGYVETVFG----------- 814 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +R +P ++ + R G Sbjct: 815 --------------------------RRLHLPEIHSQNRN---------------RRQGA 833 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVH 629 R+ +N Q + DI+ M++ D +V+ VH Sbjct: 834 ERTAINAPM------------------QGTAADIIKRAMIDVDGWLADGDIDAMMVMQVH 875 Query: 630 DEIVCETPDTD-EFNASMLYHLMT 652 DE+V E +++ + + M Sbjct: 876 DELVFEVAESEVDAFMDQVKTRME 899 >gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469] gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia fergusonii ATCC 35469] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972] gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972] gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972] gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012] gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + KL+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAKLEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] Length = 917 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 129/708 (18%), Positives = 216/708 (30%), Gaps = 178/708 (25%) Query: 7 DFET--RSPIDLTKCGICK-YAEDVCVILFAFGFDDHP-----VELWDCVHD-----PVM 53 D ET +D+ + YA+ L P V L D + Sbjct: 323 DLETCQAFALDVETTALHPMYAD-----LVGIALATAPDRSYYVPLGHTTGDTQLDIEQV 377 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 Q L L + + AH+ ++ VL+ P ++A +A+ Sbjct: 378 LQRLAPFLRHPEKQRYAHHGKYDALVLERA---GFPRPHIDFDTMIAAYLLGENAVGLKE 434 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A +MEE ELI R K R +Y DV T + + Sbjct: 435 LAFTKLGWEMEEITELIGRGKKQ----------LTMDRAEIARVTQYACADVEATYRLVE 484 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + G +DV L+ ++D + L++ + Sbjct: 485 VLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIY 544 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280 L G + ++L T LF E GL T+T Q VL + + P + R Sbjct: 545 ELA-GHPFNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYR 603 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + P Q P+ R H Sbjct: 604 QLL-------------------------------KLKSTYVDALPRQVHPQTGRVHTIFH 632 Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIAS---------EGKKLVVADLAGIEA 386 Q + +SDP+ I + VR IA E L+ D + IE Sbjct: 633 QTVAATGRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIEL 692 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A + + L+AF G+D++ T + F V VT + R I KV+ + Y A Sbjct: 693 RLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAY 752 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +A TG++ R Sbjct: 753 ---GLARDTGMSRQDAQ-----------------------------------------RF 768 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +A+ Q+ V+ E + + + + + R+R LP Sbjct: 769 IEAYFQRFPGVARYLEETRRRAAE-LGYVETLFGRRRY-----------------LP--- 807 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---- 622 + N RQ +Q + DI+ M+ +A Sbjct: 808 ---------EITSSNPARRQAAERMA-----VNMPLQGTAADIMKLAMIAVHRALAERGL 853 Query: 623 --DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 ++L VHDE+V E P+++ ++ M+ +PL+ + Sbjct: 854 RSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVE--LSVPLEVDA 899 >gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D E A ++ LM Sbjct: 887 EVHKDDLEAVAKKIHQLME 905 >gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605] gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86] gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605] Length = 928 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] Length = 928 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227] Length = 928 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D E A ++ LM Sbjct: 887 EVHKDDLEAVAKKIHQLME 905 >gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] Length = 928 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272] Length = 928 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERTAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509] Length = 928 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536] gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11] gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536] gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11] gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2] gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1] Length = 928 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046] gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K-12 substr. W3110] gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A] gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638] gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A] gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22] gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019] gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171] gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1] gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11] gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1] gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989] gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952] gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606] gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9] gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B] gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088] gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736] gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli] gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli] gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046] gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K12 substr. W3110] gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A] gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638] gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A] gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22] gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019] gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171] gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1] gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11] gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli 55989] gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI1] gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952] gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Escherichia coli BL21(DE3)] gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606] gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)] gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1] gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088] gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1] gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112] gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010] gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68] gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1] gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482] gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489] gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007] gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3] gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] Length = 928 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15] Length = 928 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1] gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1] Length = 932 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 103/563 (18%), Positives = 186/563 (33%), Gaps = 79/563 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ + V N ++ +VL DI + +LA N + Sbjct: 406 EQLKPLLEDDAIAKVGQNLKYDASVLARY---DIELKGIKFDTMLASYVYNSVGGKHDMD 462 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ +++ + T + Y D VT + Sbjct: 463 SLALRFLQHSCISFEQIAGKGKAQLTFNQI----------DLEQASPYAAEDADVTFRLH 512 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +RL K E L + I G +D L +Q + +L+Q+ Sbjct: 513 QRLNAELEKNEALNRIYQDIEVPLVPVLSRIERTGVLIDDMLLGAQSQEIAARLDELEQK 572 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T F + GL + T + T + VL P + Sbjct: 573 AFEIA-GQEFNLSSPKQLQTIFFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLIL 631 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P R H Sbjct: 632 E-------------------------------YRGLAKLKSTYTDKLPKMINPETGRVHT 660 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA G K++ D + IE R++A + Sbjct: 661 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHL 720 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L AF+ G+D++ T A V QVT +QR K + L Y A ++ Sbjct: 721 SGDKALLDAFKNGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINFGLIYGMSAF---GLS 777 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + T +E ++M E+ A E ++ T R + + Sbjct: 778 KQLGIPRGEAQQYMDT-----YFERYPGVMQYM-EDTRSLAAEKGYVETIFGR-RLHLPE 830 Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 SR +A G A II + V + + + L++ LV+ Sbjct: 831 IKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWVQAEGEGKVKLLMQVHDELVF 890 Query: 571 RDVGNNRSYLNTTTRQLTREYTY 593 ++ S + + ++L Sbjct: 891 EVESSSLSEIESKIQKLMESAAE 913 >gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263] Length = 928 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89] gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1] gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88] gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89] gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1] gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli S88] gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034] gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146] gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3] gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252] Length = 928 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206] gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3] gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206] Length = 928 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74] Length = 605 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 116/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 81 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 139 AERWLKHKTITFEEIAGKGKNPLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G ++ P P+ R H Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 564 EVHKDDVDAVAKQIHQLME 582 >gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a] gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli ED1a] Length = 928 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886] gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886] Length = 931 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 114/675 (16%), Positives = 195/675 (28%), Gaps = 168/675 (24%) Query: 33 FAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKA 82 +F + HD P+ L LE+ V N ++ +VL Sbjct: 373 ISFAVAEGEAAYLPLAHDYLDAPKQLDRDWVLAEMKLWLEDAGALKVGQNLKYDASVLAR 432 Query: 83 CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 DI + +L N + AL+ + +E+ + K T Sbjct: 433 Y---DIAMRGIAYDTMLESYVFNSVAGKHDMDSLALRYLQHQCISFEEIAGKGKKQLTFN 489 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLD 189 + Y D VT + L E L E L + Sbjct: 490 QI----------ELDQAAPYAAEDADVTLRLHNALMAQLNNDEKLKVIFEQYEMPLVPVL 539 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G + + +Q + V L++E+ L G + ++L+ LF + GL Sbjct: 540 SRMERHGVLISAEMLAKQSQEIAVRLDTLEKEVFELA-GEEFNLSSPKQLQAILFEKMGL 598 Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + T +T + VL P ++ R Sbjct: 599 PVVKKTPSGTPSTNEEVLQELALDYPLPKRILEYR------------------------- 633 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 G ++ P P R H Q +T ++DP+ I Sbjct: 634 ------GLAKLKSTYTDKLPKMVKPATGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 687 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IA GK ++ D + IE R++A ++G++ + AF G+D++ T A + Sbjct: 688 GRRIRQAFIAPAGKTILAVDYSQIELRIMAHLSGDEALIDAFRHGKDIHAATAAEVMGID 747 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + VT + R K + L Y A +A G+ + + + Sbjct: 748 ISDVTPEMRRRAKAINFGLIYGMSAF---GLAKQLGIPRGEAQQYMD------RYFERYP 798 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 R EN A Q + +TI + Sbjct: 799 GVRQYMENTRLQA------------------------------AEQGYVETIFGRR---- 824 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 L LP +S R G R+ +N Sbjct: 825 -------------------LHLPEIKSSNAMRRKGAERAAINAPM--------------- 850 Query: 600 NIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLM 651 Q + DI+ M+ +++ VHDE+V E + LM Sbjct: 851 ---QGTAADIIKRAMILVDAWIQQQPEGRVALIMQVHDELVLEVDTEHLAEVEQQVCKLM 907 Query: 652 TSNPSWAKGLPLKAE 666 S +PL A+ Sbjct: 908 ESAAL--LDVPLVAD 920 >gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82] gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 928 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354] gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354] Length = 928 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933] gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933] gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli] gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli] gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli] gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli] gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli] gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407] gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212] gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89] gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520] gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044] gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125] gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88] Length = 928 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHRDDVDAVAKQIHQLME 905 >gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687] Length = 928 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHRDDVDAVAKQIHQLME 905 >gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 933 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 92/558 (16%), Positives = 185/558 (33%), Gaps = 76/558 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115 LK LEN ++ + N F+ T+ I + T++L+ + A Sbjct: 412 LKPILENPNIGKIGQNLKFDMTIFAR---NGIDLQGIEFDTMLLSYTLDSTGRHNMDDLA 468 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---- 171 + + +++ + T + GEY D VT ++ Sbjct: 469 KRYLGHQTISFEDIAGKGKNQLTFNQI----------PLEQAGEYAAEDADVTMKLQQVL 518 Query: 172 FKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +++L+P S E L + + G +D + + T L+ + + Sbjct: 519 WQKLQPQPGLVELYQSIELPLLGVLSRMERYGVLIDSDALFLQSNEITERLTALEMQAHT 578 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF + GL + T + VL + +R Sbjct: 579 LA-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGVPSTNEEVLEELAYSHELPKVLVEHR 637 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P P+ R H Sbjct: 638 -------------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYH 666 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +SDP+ I +R IA +G K++ AD + IE R++A ++ + Sbjct: 667 QAVTATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 726 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 Q + AF G+D++ +T A F + QVT +QR K + L Y + ++ Sbjct: 727 QGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSF---GLSRQL 783 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + + + + F ++E + G + +S Sbjct: 784 GISRADAQRYMD--LYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRL-----YLPEINS 836 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + G A KR + L + +D ++ +++ LV+ Sbjct: 837 SNAMRRKGAERVAINAPMQGTAADTIKRAMIKLDGITRDDPDIHMIMQVHDELVFEVRSE 896 Query: 576 NRSYLNTTTRQLTREYTY 593 ++ + +Q Sbjct: 897 KIAFFSDLIKQHMEAAAE 914 >gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W] gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W] gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W] gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11] Length = 928 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 116/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQIT----------LEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101] Length = 916 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 343 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 392 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 393 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 449 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 450 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 499 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 500 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 559 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 560 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 618 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 619 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 647 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 648 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 707 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 708 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 764 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 765 LNIPRK----------------EAQKYMDLYFERYP------------------------ 784 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 785 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 817 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 818 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 874 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D + A ++ LM Sbjct: 875 EVHRDDVDAVAKQIHQLME 893 >gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5] gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5] Length = 928 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 118/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LEN V N ++R +L N I + +L N + Sbjct: 405 LKPLLENEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167] Length = 928 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLTKC----------GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIELGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B] Length = 928 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDANVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] Length = 903 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 113/614 (18%), Positives = 195/614 (31%), Gaps = 89/614 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQV-----LKEALENT 64 DL + Y E ++ +F H D P +P+ LK LE+ Sbjct: 330 DLETNNLD-YIE-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLARLKPLLEDP 387 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 V N F+ VL N I + +L L + + S ++ Sbjct: 388 RHGKVGQNLKFDCNVLA---NYGIELQGIRHDSMLESYV-----LDSTATRHNMDSLALK 439 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 L E + P ++ Y D ++ ++ P +E+ Sbjct: 440 Y---LQRTTITYEMVAGKGAKQLPFNQVTIEKAAPYAAEDADISLQLHHCFWPRLQQEEG 496 Query: 185 LWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L L Q + G V+ + + +L+QE L G + Sbjct: 497 LRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSDELAARLKRLEQEAFELA-GESFNL 555 Query: 234 RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++++ L+ + L + T T T + VL P + R Sbjct: 556 ASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQLLLEYR--------- 606 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ P Q R H Q +T Sbjct: 607 ----------------------TLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAVTATGRL 644 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +SDP+ I +R IA G +LV AD + IE R++A ++ ++ L AFE Sbjct: 645 SSSDPNLQNIPIRSTEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEA 704 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 ED++ T F VT +QR K + L Y A + G+N H Sbjct: 705 EEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSA---HGLGRQLGINRTAAQH 761 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + E + + EN + A + ++ T R + + HSR ++ N+ Sbjct: 762 YI------ERYFQRYPGVKAYMENICQQARQKGYVETLFGR-RLYLPEIHSRQTQRRNQA 814 Query: 525 HQAFEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + G A KR + ++++ K N +++ LV+ L T Sbjct: 815 ERTAINAPMQGSAADIIKRAMIHADRWLQEQKANARMIMQVHDELVFE---VAEDKLEAT 871 Query: 584 TRQLTREYTYGGKL 597 R + +L Sbjct: 872 IRAIRENMAAAAQL 885 >gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] Length = 928 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + A+ + E +P Sbjct: 777 LNIPRKE----------------AQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGPAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] Length = 929 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 110/643 (17%), Positives = 201/643 (31%), Gaps = 161/643 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110 LK LE++++ + N F+R VL D + ++ V Sbjct: 404 LKPLLEDSNLLKIGQNIKFDRGVLARYGIELQGIAYDTMLESYVLNSVAGM-----GRHD 458 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A + + K +E+ + T + A Y D VT Sbjct: 459 MDSLAERHLNHKTTTFEEIAGKGKNQLTFNQV----------AVEQAAMYAAEDADVTLL 508 Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + + P K E L + + G +D + ++ + +L+ Sbjct: 509 LHQAMWPQLEKAPTLEKVFLNTEMPLVMVLSRMERTGVLIDANILAEHSKEITARLDELE 568 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQ 275 +E L G V + ++L+T LF + L + + +T + VL Sbjct: 569 KEAHELA-GEVFNLASPKQLQTILFEKLQLPVVKKTPNGAPSTNEEVLEELADTHALPKV 627 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R G ++ P P R Sbjct: 628 ILEHR-------------------------------GLAKLKSTYTDKLPQMVHPLTKRV 656 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H Q +T + DP+ I +R +A EG +++ AD + IE R++A Sbjct: 657 HTSYHQAVTATGRLSSRDPNLQNIPVRNKEGRRIRQAFVAPEGYRIMAADYSQIELRIMA 716 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ +Q LKAF G+D++ T A F + QVT +QR K + L Y A Sbjct: 717 HLSQDQGLLKAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMSAF---G 773 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 ++ G+ A+ + E +P Sbjct: 774 LSRQLGIPRGE----------------AQRYMDLYFERYP-------------------- 797 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + + +Q E G RR L L R+ + Sbjct: 798 --------GVLAYMERTRKQAEEQGYVETLDGRR-------------LYLSDIKSRNAMR 836 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624 R R +N Q + DI+ + M+ + + Sbjct: 837 RKA-AEREAINAPM------------------QGTAADIIKKAMIAVDDWIVSEEPKVRM 877 Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ VHDE+V E +++ E+ + LM + +PLK + Sbjct: 878 IMQVHDELVFEVHESELEYAEQKIRELMEKSMV--LDVPLKVD 918 >gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906] gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906] Length = 949 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 113/700 (16%), Positives = 215/700 (30%), Gaps = 176/700 (25%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S ++ D +I +F + HD +P Sbjct: 375 DTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVLTA 424 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ + + N F+R +++ N I ++ +L N + S Sbjct: 425 LKPILEDKTILKIGQNLKFDRGIME---NEGIELNGIYFDTMLESYVLNSVSSRHDMDTL 481 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A K + K +E+ + T + Y D +T + + Sbjct: 482 AEKHLNHKTTTFEEIAGKGKGQLTFNQI----------EVEQATLYAAEDADITLLLHQA 531 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + +G +D + +Q + ++++E Sbjct: 532 LYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETF 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +L G + ++L+ LF + L + T T + VL + + + Sbjct: 592 ALA-GQEFNLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHELPRLILEH 650 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P + R H Sbjct: 651 R-------------------------------GLAKLKSTYTDKLPLMVNSKTKRVHTSY 679 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R I +G K+V AD + IE R++A ++ Sbjct: 680 HQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHLSQ 739 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T + F + +VT +QR K + L Y A + Sbjct: 740 DKGLLDAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFGLIYGMSAFGLSQ---Q 796 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + Sbjct: 797 IGVERKEAQ--------------------------------------------RYMDLYF 812 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + + + + +Q + G + GR L ++ Sbjct: 813 ERYPGVLDYMERTRKQASQQG-----------------------YVETLDGRRLYLPEIN 849 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLT 627 + N R+ + +Q + DI+ + M+ +++ Sbjct: 850 SK----NAIRRKASEREA-----INAPMQGTAADIIKKAMIAVDNWICHECPDDVHMIMQ 900 Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E ++ E +M++ LM S+ A +PLK E Sbjct: 901 VHDELVFEVRESYLEKANAMIHKLMESSMELA--IPLKVE 938 >gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627] gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627] Length = 928 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 116/679 (17%), Positives = 214/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y + A + D P ++ + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------VPVAHDYLDAPEQI----SRERVLEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N DI + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA + +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPQDHVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + A+ + E +P Sbjct: 777 LNIPRKE----------------AQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + + G + I +A+ I + + A K +++ VHDE+V Sbjct: 830 SSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEKPRVRMIMQVHDELVF 886 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDLDVVAKKIHQLME 905 >gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80] gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80] Length = 525 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 113/640 (17%), Positives = 201/640 (31%), Gaps = 154/640 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEA 115 LK LE+ V N ++ +V+ +++ R T++ + N + A Sbjct: 1 LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLA 58 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ +++ + T + A +Y D VT + +R+ Sbjct: 59 LRFLQHSCISFEQVAGKGKNQLTFNQI----------ALEEAAQYAAEDADVTLRLHQRI 108 Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 PL + E L + I G +D L +Q + + +L+Q Sbjct: 109 HPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYE 168 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+T LF + L + T +T + VL P + Sbjct: 169 LA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVL---- 223 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 +++ G ++ P P R H Sbjct: 224 ---------------------------IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYH 256 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G+ Sbjct: 257 QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGD 316 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 317 QALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQL 373 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A+ + E +P V + S Sbjct: 374 GIPRGE----------------AQEYMDKYFERYP--------------GVMQYMEDTRS 403 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R ++L + I R+ LP Sbjct: 404 RAAQL------------GYVETIFGRRLH-----------------LP------------ 422 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTV 628 T+R R +Q + DI+ + M+ +++ V Sbjct: 423 -----EITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQV 477 Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 HDE+V E ++ + LM S A +PL AE Sbjct: 478 HDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEA 515 >gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli] gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli] Length = 898 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 120/679 (17%), Positives = 212/679 (31%), Gaps = 165/679 (24%) Query: 27 DVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFE 76 ++ +F HD P PQ L K E+ + H+ ++ Sbjct: 335 QAELVGLSFAIGGEKPVYIPLAHDYPDAPQQLNRQWVLQQLKPLFEDPKQIKIGHHLKYD 394 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFC 134 +L I + +L ++ ALK K +E+ + Sbjct: 395 MNILAHY---GIQLRGIDFDTMLESYLLDSASNQHSLDSAALKHLDHKTIRFEEIAGKGA 451 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQ 183 K +T + + G Y D + + + L+P + E Sbjct: 452 KQKTFNQIN----------LQDAGPYAAEDAAIALRLHETLKPQLDNVVGLSTVYTEIEM 501 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G +D L ++ + L+Q+ L G + ++L+T L Sbjct: 502 PLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLTLEQQAFQLA-GKPFNLGSPKQLQTIL 560 Query: 244 FLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 F + GL + +T + VL + P + +R Sbjct: 561 FDDHGLPILEKTPKGQASTSENVLQALALTFPLPKIILKHRRL----------------- 603 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 S+ P Q P+ R H Q +SDP+ I Sbjct: 604 --------------SKLKSTYTDKLPEQINPKTGRVHTSYHQAAVVTGRLSSSDPNLQNI 649 Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R IA G ++ AD + IE R++A + ++ LKAF G D++ T A Sbjct: 650 PARTHEGRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGLLKAFAQGLDIHQATAA 709 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 N+ +VT +QR K + L Y A +A G++ Sbjct: 710 EVLNIPLERVTHEQRRSAKAINFGLMYGMSAF---GLARQLGISR--------------- 751 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 EDA+N+ + +P VK+ + R Sbjct: 752 -EDAKNYIERYFDRYP--------------GVKRYMERIRQR------------------ 778 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 A ++R V ++ GR L N +++N+ R Sbjct: 779 -----AHEQRYVTTLF--------------GRRL-------NLAFINSNDSLQRRASERA 812 Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 +Q + DI+ + M+ K +++ VHDE+V E + D A L Sbjct: 813 A--INAPLQGSAADIIKKAMIRIDAELIKKKLDAHMIMQVHDELVFEIAEHDLQRAKRLI 870 Query: 649 H-LMTSNPSWAKGLPLKAE 666 LM + +PL + Sbjct: 871 ENLMVHTTT--LSVPLVVD 887 >gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14] Length = 928 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 213/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F++ VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] Length = 928 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYATEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703] gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703] Length = 931 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 99/597 (16%), Positives = 191/597 (31%), Gaps = 97/597 (16%) Query: 16 LTKCGICKY------AEDVCVILFA--FGFDDHPVELWDCVHD-----PVMPQV-----L 57 + G+ + + + L F + HD + + L Sbjct: 348 IKTKGVFAFDTETDSLDTISTTLVGVSFAINAGEAAYLPLGHDYLDAPEQLDRDKVLALL 407 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEA 115 K LE+ V + N F++ V+ I + +L + + + Sbjct: 408 KPVLEDASVLKIGQNLKFDKGVMARY---GITLRGIAFDTMLESYVLDSVAGRHDMDSLS 464 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + K +E+ + T + Y D VT + + L Sbjct: 465 ERYLNHKTITFEEIAGKGKNQLTFNQI----------PLEQAAVYAAEDADVTLRLHQVL 514 Query: 176 EPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +KE L+ + Q + +G +D A+ ++ + +L+ Sbjct: 515 SEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDTAILAEHSKELTQRLAELEVRAHE 574 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 L G V + ++L+ L+ + L + T T + VL+ P + R Sbjct: 575 LA-GEVFNLSSTKQLQAILYEKLQLPVTKKTPKGAPSTNEEVLAELALDYPLPKVILEYR 633 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G ++ P P R H Sbjct: 634 -------------------------------GLAKLKSTYTDKLPMMINPLTKRVHTSYH 662 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +SDP+ I +R IA EG +V AD + IE R++A ++ + Sbjct: 663 QAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYCIVAADYSQIELRIMAHLSCD 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 LKAF G D++ T A F + +VT +QR K + L Y A ++ Sbjct: 723 AGLLKAFSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMSAF---GLSRQL 779 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ N + + + + E + A E ++ T + + HS Sbjct: 780 GIGRNEAQKYMN------LYFERYPGVQHYMEQTRQQAAEQGYVAT-LDGRRLYLPDIHS 832 Query: 516 RVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + +A G A II + + + +++ + +++ LV+ Sbjct: 833 RNAISRKAAERAAINAPMQGTAADIIKKAMASIDAWLLSQEEPLINMIMQVHDELVF 889 >gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327] Length = 884 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 360 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 417 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 418 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 467 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 468 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 527 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 528 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 586 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 587 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 615 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 616 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 732 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 733 LNIPRK----------------EAQKYMDLYFERYP------------------------ 752 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 753 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 785 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 786 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 842 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 843 EVHKDDVDAVAKQIHQLME 861 >gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016] gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016] Length = 957 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 98/561 (17%), Positives = 177/561 (31%), Gaps = 87/561 (15%) Query: 34 AFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83 +F + HD + + LK LE+ V N ++ +VL Sbjct: 400 SFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDDTKAKVGQNLKYDASVLARY 459 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ ++L + T Sbjct: 460 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQ 516 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPLS----SKEQELWYLDQ 190 + Y D VT + RL E L+ E L + Sbjct: 517 I----------DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLS 566 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G +D +Q + V +L+Q+ + G + ++L+T LF + GL Sbjct: 567 RMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIA-GQPFNMNSPKQLQTILFEQMGLP 625 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P Sbjct: 626 VIKKTPSGTPSTAEEVLQELALDYPLPS-------------------------------V 654 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 +++ G ++ P P R H Q +T ++DP+ I Sbjct: 655 IMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 714 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF+ G+D++ T A V+ Sbjct: 715 RRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSI 774 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + E + + Sbjct: 775 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQTYMD--KYFERYPGVMQY 829 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + N +H + G + SR +A G A Sbjct: 830 MEDTRSNASQHGYVETIFGRRL-----HLPEITSRNVMRRKAAERAAINAPMQGTAADII 884 Query: 542 KRRDVPLVYMKKDKNNLILML 562 K+ + + +++ N + L Sbjct: 885 KKAMLLVDQWIQEEGNGRVKL 905 >gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905] Length = 884 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 360 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 417 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 418 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 467 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 468 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 527 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 528 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 586 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 587 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 615 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 616 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 732 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 733 LNIPRK----------------EAQKYMDLYFERYP------------------------ 752 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 753 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 785 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 786 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 842 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 843 EVHKDDVDAVAKQIHQLME 861 >gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 128/708 (18%), Positives = 215/708 (30%), Gaps = 178/708 (25%) Query: 7 DFET--RSPIDLTKCGICK-YAEDVCVILFAFGFDDHP-----VELWDCVHD-----PVM 53 D ET +D+ + YA+ L P V L D + Sbjct: 323 DLETCQAFALDVETTALHPMYAD-----LVGIALATAPDRSYYVPLGHTTGDTQLDIEQV 377 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 Q L L + + AH+ ++ VL+ P ++A +A+ Sbjct: 378 LQRLAPFLRHPEKQRYAHHGKYDALVLERA---GFPRPHIDFDTMIAAYLLGENAVGLKE 434 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A +MEE ELI R K R +Y DV T + + Sbjct: 435 LAFTKLGWEMEEITELIGRGKKQ----------LTMDRAEIARVTQYACADVEATYRLVE 484 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + G +DV L+ ++D + L++ + Sbjct: 485 VLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIY 544 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280 L G + ++L T LF E GL T+T Q VL + + P + R Sbjct: 545 ELA-GHPFNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYR 603 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + P Q P+ R H Sbjct: 604 QLL-------------------------------KLKSTYVDALPRQVHPQTGRVHTIFH 632 Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIAS---------EGKKLVVADLAGIEA 386 Q + +SDP+ I + VR IA E L+ D + IE Sbjct: 633 QTVAATGRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIEL 692 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A + + L+AF G+D++ T + F V VT + R I KV+ + Y A Sbjct: 693 RLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAY 752 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +A TG++ R Sbjct: 753 ---GLARDTGMSRQDAQ-----------------------------------------RF 768 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +A+ Q+ V+ E + + + + + R+R LP Sbjct: 769 IEAYFQRFPGVARYLEETRRRAAE-LGYVETLFGRRRY-----------------LP--- 807 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---- 622 + N RQ +Q + DI+ M+ + Sbjct: 808 ---------EITSSNPARRQAAERMA-----VNMPLQGTAADIMKLAMIAVHRPLAERGL 853 Query: 623 --DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 ++L VHDE+V E P+++ ++ M+ +PL+ + Sbjct: 854 RSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVE--LSVPLEVDA 899 >gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] Length = 931 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 98/561 (17%), Positives = 177/561 (31%), Gaps = 87/561 (15%) Query: 34 AFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83 +F + HD + + LK LE+ V N ++ +VL Sbjct: 374 SFAVAEGEAAYVPVAHDYLDAPEQLDREWVLAQLKPLLEDDTKAKVGQNLKYDASVLARY 433 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ ++L + T Sbjct: 434 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQ 490 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPLS----SKEQELWYLDQ 190 + Y D VT + RL E L+ E L + Sbjct: 491 I----------DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLS 540 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G +D +Q + V +L+Q+ + G + ++L+T LF + GL Sbjct: 541 RMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIA-GQPFNMNSPKQLQTILFEQMGLP 599 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P Sbjct: 600 VIKKTPSGTPSTAEEVLQELALDYPLPS-------------------------------V 628 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 +++ G ++ P P R H Q +T ++DP+ I Sbjct: 629 IMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF+ G+D++ T A V+ Sbjct: 689 RRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSI 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + E + + Sbjct: 749 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD--KYFERYPGVMQY 803 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + N +H + G + SR +A G A Sbjct: 804 MEDTRSNAAQHGYVETIFGRRL-----HLPEITSRNVMRRKAAERAAINAPMQGTAADII 858 Query: 542 KRRDVPLVYMKKDKNNLILML 562 K+ + + +++ N + L Sbjct: 859 KKAMLLVDQWIQEEGNGRVKL 879 >gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS] gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS] Length = 928 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTRRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] Length = 937 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 126/699 (18%), Positives = 214/699 (30%), Gaps = 160/699 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-PQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSQTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P PR + Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + A + E A F+ T R + Sbjct: 773 -GLAKSLGIDNLSAKNFIDRYFARYP------GVAEYMQRTKEQAAAQGFVETLFGR-RL 824 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 H++ + +A G A KR + Sbjct: 825 YLPDIHNKNANARAGAERAAINAPMQGTASDLIKRAMI---------------------- 862 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 + E +A D L +++ V Sbjct: 863 --------------DVSRWLSE-----------CEASLWDCLKS----------KLIMQV 887 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P+ + + L +M +PL AE Sbjct: 888 HDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 926 >gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] Length = 931 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 106/643 (16%), Positives = 196/643 (30%), Gaps = 156/643 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N ++ +VL DI + +LA N + Sbjct: 405 EQLKPILEDDTQAKVGQNLKYDASVLARY---DIELKGIKHDTMLASYVYNSVGGKHDMD 461 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ +++ + K T + Y D VT + Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELDEASPYAAEDADVTLRLH 511 Query: 173 KRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 RL ++++L + Q I G +D +Q + +L+Q+ Sbjct: 512 NRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELEQK 571 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277 + + ++L+ LF + GL + T +T + VL P + Sbjct: 572 AYEIA-EQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLIL 630 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P R H Sbjct: 631 EYR-------------------------------GLAKLKSTYTDKLPKMINSETGRVHT 659 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R +A G K++ D + IE R++A + Sbjct: 660 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAVDYSQIELRIMAHL 719 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+Q L AF+ G+D++ T A QV+ +QR K + L Y A +A Sbjct: 720 SGDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAF---GLA 776 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + + + Sbjct: 777 KQLGIPRGEAQDYMN-----------------------------------------KYFE 795 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + + A + + I +R +P + R+ + R Sbjct: 796 RYPGVMQYMEDTRSAAAE--QGYVETIFGRRLHLPEI--------------KSRNGMRRK 839 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIV 625 R+ +N Q + DI+ + M+ + ++ Sbjct: 840 A-AERAAINAPM------------------QGTAADIIKKAMLLVDQWIQAEGDGRVKLL 880 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 + VHDE+V E ++ + LM S A +PL AE Sbjct: 881 MQVHDELVFEVQESALTEIESKVQELMESAAELA--VPLVAEA 921 >gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042] Length = 928 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 105/621 (16%), Positives = 193/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V N ++R +L N I + +L N + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A + K +E+ + T + A G Y D VT ++ Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P K E L + I G +D + H ++ + + +L+++ Sbjct: 510 LKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHEIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R I E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLA 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + +A+ + E +P Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCET-PDTDEFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 885 VFEVHKDDVDAVAKQIHQLME 905 >gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 933 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 98/611 (16%), Positives = 198/611 (32%), Gaps = 88/611 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDPVMPQVLKEALEN 63 +D G+ Y ++ +F ++ + LK LEN Sbjct: 361 VDTETDGLD-YM-SANLVGISFALENGEAAYLPLHLDYLGAPKTLEKNTALSALKPILEN 418 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEALKLSSQK 122 ++ + N F+ T+ I + T++L+ + A + + Sbjct: 419 PNIGKIGQNLKFDMTIFAR---NGIDLQGIEFDTMLLSYTLDSTGRHNMDDLAKRYLGHQ 475 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----FKRLEPL 178 +++ + T + GEY D VT ++ +++LEP Sbjct: 476 TISFEDIAGKGKNQLTFNQI----------PLEQAGEYAAEDADVTMKLQQVLWEKLEPQ 525 Query: 179 S-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 S E L + + G +D + + T L+ + +L G Sbjct: 526 PGLVALYQSIELPLLSVLSRMERCGVLIDSDALFLQSNEITERLTALEMQAYALA-GQPF 584 Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF + GL + +T + VL + +R Sbjct: 585 NLASTKQLQEILFGKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPKVLVEHR------- 637 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G S+ P P+ R H Q +T Sbjct: 638 ------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATG 673 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA +G K++ AD + IE R++A ++ +Q + AF Sbjct: 674 RLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINAF 733 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ +T A F + QVT +QR K + L Y + F + G++ Sbjct: 734 AQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFVFP---ARLGISRADA 790 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + + + F ++E + G + +S + Sbjct: 791 QRYMD--LYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRL-----YLPEINSSNAMRRK 843 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + G A KR + L + +D ++ +++ LV+ ++ + Sbjct: 844 GTERVAINAPMQGTAADIIKRAMIKLDGITRDDPDIHMIMQVHDELVFEVRSEKIAFFSD 903 Query: 583 TTRQLTREYTY 593 +Q Sbjct: 904 LIKQHMEAAAE 914 >gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6] gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6] Length = 931 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 98/561 (17%), Positives = 177/561 (31%), Gaps = 87/561 (15%) Query: 34 AFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83 +F + HD + + LK LE+ V N ++ +VL Sbjct: 374 SFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDDTKAKVGQNLKYDASVLARY 433 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ ++L + T Sbjct: 434 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQ 490 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPLS----SKEQELWYLDQ 190 + Y D VT + RL E L+ E L + Sbjct: 491 I----------DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLS 540 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G +D +Q + V +L+Q+ + G + ++L+T LF + GL Sbjct: 541 RMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIA-GQPFNMNSPKQLQTILFEQMGLP 599 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P Sbjct: 600 VIKKTPSGTPSTAEEVLQELALDYPLPS-------------------------------V 628 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 +++ G ++ P P R H Q +T ++DP+ I Sbjct: 629 IMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF+ G+D++ T A V+ Sbjct: 689 RRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSI 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + E + + Sbjct: 749 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD--KYFERYPGVMQY 803 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + N +H + G + SR +A G A Sbjct: 804 MEDTRSNAAQHGYVETIFGRRL-----HLPEITSRNVMRRKAAERAAINAPMQGTAADII 858 Query: 542 KRRDVPLVYMKKDKNNLILML 562 K+ + + +++ N + L Sbjct: 859 KKAMLLVDQWIQEEGNGRVKL 879 >gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1] gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1] Length = 922 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 114/674 (16%), Positives = 197/674 (29%), Gaps = 152/674 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALEN 63 +D + Y ++ +F + HD V PQ L + LE+ Sbjct: 347 VDTETTSLD-YM-VAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILED 404 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 V V N ++ +VL N I + + +L N + S G ALK Sbjct: 405 DKVKKVGQNLKYDISVLA---NAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGH 461 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +++ + K T + + Y D +T + + L P K Sbjct: 462 KNIGFEDIAGKGAKQLTFNQI----------PLEVAAPYAAEDADITLRLHQHLWPRLEK 511 Query: 182 EQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E +L + I +G +D L + + + L+++ + G Sbjct: 512 EPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIA-GEK 570 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 571 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 626 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P + R H Q Sbjct: 627 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 659 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA G+K++ AD + IE R++A ++ + LKA Sbjct: 660 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKA 719 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F VT +QR K + L Y A +A + N Sbjct: 720 FAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRNE 776 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + R+M+E A E ++ T R + + R + Sbjct: 777 AQTYIDT-----YFARYPGVLRYMEETRA-GAAELGYVSTLFGR-RLYLPEIRDRNAMRR 829 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +A G A K+ + Sbjct: 830 QGAERAAINAPMQGTAADIIKKAMI----------------------------------- 854 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 Q + T G M ++ VHDE+V E Sbjct: 855 -NIAQWIKTETQG----------------EIAM----------IMQVHDELVFEVDADKA 887 Query: 642 FNASM-LYHLMTSN 654 + LM Sbjct: 888 ETLKQKVCELMAKA 901 >gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026] gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli UMN026] gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] Length = 928 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LEN V N ++R +L N I + +L N + Sbjct: 405 LKPLLENEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R I E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200] Length = 922 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 114/674 (16%), Positives = 197/674 (29%), Gaps = 152/674 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALEN 63 +D + Y ++ +F + HD V PQ L + LE+ Sbjct: 347 VDTETTSLD-YM-VAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILED 404 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 V V N ++ +VL N I + + +L N + S G ALK Sbjct: 405 DKVKKVGQNLKYDISVLA---NAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGH 461 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +++ + K T + + Y D +T + + L P K Sbjct: 462 KNIGFEDIAGKGAKQLTFNQI----------PLEVAAPYAAEDADITLRLHQHLWPRLEK 511 Query: 182 EQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E +L + I +G +D L + + + L+++ + G Sbjct: 512 EPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIA-GEK 570 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 571 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 626 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P + R H Q Sbjct: 627 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 659 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA G+K++ AD + IE R++A ++ + LKA Sbjct: 660 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKA 719 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F VT +QR K + L Y A +A + N Sbjct: 720 FAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRNE 776 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + R+M+E A E ++ T R + + R + Sbjct: 777 AQTYIDT-----YFARYPGVLRYMEETRA-GAAELGYVSTLFGR-RLYLPEIRDRNAMRR 829 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +A G A K+ + Sbjct: 830 QGAERAAINAPMQGTAADIIKKAMI----------------------------------- 854 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 Q + T G M ++ VHDE+V E Sbjct: 855 -NIAQWIKTETQG----------------EIAM----------IMQVHDELVFEVDADKA 887 Query: 642 FNASM-LYHLMTSN 654 + LM Sbjct: 888 ETLKQKVCELMAKA 901 >gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3] gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3] Length = 932 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 107/643 (16%), Positives = 193/643 (30%), Gaps = 156/643 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N ++ +VL I + +LA N + Sbjct: 406 EQLKPILEDDAQAKVGQNLKYDMSVLARY---GIEMKGIKHDTMLASYVFNSVGGKHDMD 462 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ +++ + K T + Y D VT + Sbjct: 463 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELGEASPYAAEDADVTLRLH 512 Query: 173 KRL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 RL E L + I G VD L +Q + V +L+Q+ Sbjct: 513 NRLMENIEQDEKLKAIYEEIEVPLIPVMSRIERTGVFVDDMLLGAQSQEIAVRLDELEQK 572 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277 + + ++L+ LF + GL + + +T + VL P + Sbjct: 573 AYEIA-EQEFNMNSPKQLQAILFEKMGLPVIKKTPSGSPSTNEEVLQELALDYPLPKLII 631 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P R H Sbjct: 632 EYR-------------------------------GLAKLKSTYTDKLPKMINAETGRVHT 660 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R +A G K++ D + IE R++A + Sbjct: 661 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHL 720 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L+AF+ G+D++ T A V VT +QR K + L Y A +A Sbjct: 721 SGDKALLEAFQQGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNFGLIYGMSAF---GLA 777 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ H + T + + Sbjct: 778 KQLGIPRGEAQHYMDT-----------------------------------------YFE 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + + A + + V +Y GR L + Sbjct: 797 RYPGVMQYMEDTRSAASE------------QGFVETIY--------------GRRLHLPE 830 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 + + + R+ +Q + DI+ + M+ ++ Sbjct: 831 I--------QSRNGMRRKAAERA-AINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLL 881 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 + VHDE+V E ++ + LM S +PL AE Sbjct: 882 MQVHDELVFEVEESSLAEIESKVQELMESAAE--LEVPLVAEA 922 >gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] Length = 932 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 114/692 (16%), Positives = 206/692 (29%), Gaps = 168/692 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQ--------VLKEALENT 64 D G+ + + +I F+F HD Q LK LE+ Sbjct: 358 DTETDGLDTLSSN--LIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWVLAQLKPLLEDE 415 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N F++++L DI + +L + + A + + K Sbjct: 416 KALKVGQNLKFDQSMLARY---DIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHK 472 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 +E+ + T + A G Y D VT ++ L P + Sbjct: 473 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQQS 522 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + I G +D + ++ + + +L+++ L Sbjct: 523 EGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EEPF 581 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 582 NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR------- 634 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 635 ------------------------GLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATG 670 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + DP+ I +R IA +G +++ AD + IE R++A ++ +Q L AF Sbjct: 671 RLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDQGLLTAF 730 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T A F + +VT DQR K + L Y A +A + Sbjct: 731 AAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMSAF---GLARQLNIPRGEA 787 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + R + Sbjct: 788 Q--------------------------------------------RYMDLYFERYPGVLE 803 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + +Q E G GR L D+ + N Sbjct: 804 YMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----RNA 836 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635 T R+ +Q + DI+ M+ +++ VHDE+V E Sbjct: 837 TRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFE 891 Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 ++ +A + LM + A +PLK + Sbjct: 892 VHESVLESAEQKIRELMEQSMQLA--VPLKVD 921 >gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223] gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223] Length = 890 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 105/594 (17%), Positives = 200/594 (33%), Gaps = 87/594 (14%) Query: 33 FAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKA 82 +F + HD PQ L A LE+ V N ++ +V+ Sbjct: 332 MSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQLKPLLEDESKAKVGQNLKYDASVIAR 391 Query: 83 CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 +++ R T++ + N + AL+ +++ + T Sbjct: 392 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 449 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190 + + +Y D VT + +R+ PL + E L + Sbjct: 450 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYSEIEMPLVPVLS 499 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D L +Q + + +L+Q+ L G + ++L+T LF + L Sbjct: 500 RIERTGVMIDDMLLSAQSQEIALRLDELEQKAYELA-GQSFNLSSPKQLQTILFEQMKLP 558 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + Sbjct: 559 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 588 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 +++ G ++ P P R H Q +T ++DP+ I Sbjct: 589 -IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 647 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V Sbjct: 648 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 707 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + + +E Sbjct: 708 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQEYMD-----KYFERYPGV 759 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--II 539 ++M++ A E ++ T R + + SR + +A G A II Sbjct: 760 MQYMEDTRSR-AAELGYVETIFGR-RLHLPEITSRNAMRRKAAERAAINAPMQGTAADII 817 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + V ++ + L++ LV+ ++ S + + +QL Sbjct: 818 KKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESAAE 871 >gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414] gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414] Length = 970 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 119/672 (17%), Positives = 225/672 (33%), Gaps = 152/672 (22%) Query: 33 FAFGFDDHPVELWDCVH--DPVMPQVLKEA-----LENTDVTIVAHNSYFERTVLKACFN 85 +G H + Q + A L + D N F+R V C Sbjct: 402 CCWGTQPDESAYIPIAHKFGENLSQDVVFAELSPILTSADYPKTFQNGKFDRLVF-RCQG 460 Query: 86 LDIPIHRWICTLVLARSNGLPS--------ALKAVGEALKLSSQKMEEGKELIARFCKGE 137 + + + +LA P +L+ +G LK + +G+ + Sbjct: 461 IKL--AGIVFDTMLASYVLNPDTPHNLNDISLRYLGLILKSYEDLVPKGQTIA------- 511 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELW 186 + G YC V T ++ ++L L EQ L Sbjct: 512 -------------DISIASVGYYCCLQVHATFQLVQKLREELEKFPALHKLLLEVEQPLE 558 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + G C++ A H L+Q ++++ KL++ S+ G + ++L LF + Sbjct: 559 AVLAEMEYTGVCINSAYLHELSQQLEIDLAKLEETATSIA-GETFNLGSPKQLSVILFDK 617 Query: 247 TGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 GL + +T +++ +KL ++ G + Sbjct: 618 LGLSTKYSRKIKTGYSTDVATLEKLQE--------------------------VDETGFV 651 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 +++ S+ P P R H +Q +T +S+P+ I Sbjct: 652 DAMMEYRTLSKLKSTYVDALPALVRPDTQRLHTNFNQTVTATGRLSSSNPNLQNIPIRTA 711 Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 S +R + G + AD + IE R+LA ++ E L+A++ ED++ T F Sbjct: 712 FSRQIRKAFLPESGYLMAAADYSQIELRILAHLSQEPILLQAYQQNEDIHTVTARLVF-- 769 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + +T D+R I K + + Y G+ + + +TG++ + +K + E + Sbjct: 770 EKSDITSDERRIAKTINFGVIYGMGS---LRFSRSTGIDKSIANEFIKRFN--ERYPQVF 824 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + E + AI ++ T R R + N+ Sbjct: 825 AYL----EGVKKQAISQGYVETILGR---------RRYVDFKND---------------- 855 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 + K+ + L ++L D G RS N Sbjct: 856 --------SLRKLKNSKPEDIDLSKLKNLGPEDAGLLRSAANAP---------------- 891 Query: 600 NIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654 +Q S DI+ M+ K ++L VHDE+V E P + E + +M + Sbjct: 892 --IQGSSADIIKIAMIRMHEVLQKYQARLLLQVHDELVFEVPPQEWEELQPQIKSVMENA 949 Query: 655 PSWAKGLPLKAE 666 + +PL + Sbjct: 950 VT--LSVPLLVD 959 >gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603] gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603] Length = 938 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 102/594 (17%), Positives = 199/594 (33%), Gaps = 87/594 (14%) Query: 33 FAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 +F + HD + LK LE+ V N ++ +V+ Sbjct: 380 VSFAVAEGEAAYIPVAHDYLDAPQQLDREWVITQLKPLLEDESKAKVGQNLKYDASVMAR 439 Query: 83 CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 +++ R T++ + N + AL+ +++ + T Sbjct: 440 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190 + + +Y D VT + +R+ PL + E L + Sbjct: 498 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLS 547 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D L +Q + + +L+++ L G + ++L+T LF + L Sbjct: 548 RIERTGVMIDDMLLSAQSQEIALRLDELEKKAYELA-GQPFNLSSPKQLQTILFEQMKLP 606 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + Sbjct: 607 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 636 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 +++ G ++ P P R H Q +T ++DP+ I Sbjct: 637 -IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 695 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V Sbjct: 696 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 755 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + + +E Sbjct: 756 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQEYMD-----KYFERYPGV 807 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--II 539 ++M++ A E ++ T R + + SR + +A G A II Sbjct: 808 MQYMEDTRSR-AAELGYVETIFGR-RLHLPEITSRNAMRRKAAERAAINAPMQGTAADII 865 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + V ++ + L++ LV+ ++ S + + +QL Sbjct: 866 KKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESAAE 919 >gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891] gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891] Length = 931 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 108/643 (16%), Positives = 199/643 (30%), Gaps = 156/643 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N ++ +VL I + +LA N + Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY---GIEMKGIKHDTMLASYVYNSVGGKHDMD 461 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ +++ + K T + Y D VT + Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELDEASPYAAEDADVTLRLH 511 Query: 173 KRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQE 221 RL ++++L + Q I G +D +Q + +L+Q+ Sbjct: 512 NRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLGAQSQEIAQRLDELEQQ 571 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277 + + ++L+ LF + GL + T +T + VL P + Sbjct: 572 AYEIA-EQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLIL 630 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P R H Sbjct: 631 EYR-------------------------------GLAKLKSTYTDKLPKMINPETGRVHT 659 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA G K++ D + IE R++A + Sbjct: 660 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHL 719 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L+AF+ G+D++ T A QV+ +QR K + L Y A +A Sbjct: 720 SGDKALLEAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAF---GLA 776 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ A+++ E +P Sbjct: 777 KQLGIPRGE----------------AQDYMNKYFERYP---------------------- 798 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 Q +E+ ++ A ++ V +Y GR L + Sbjct: 799 --------------GVMQYMEDTRS-TASEQGYVETIY--------------GRRLHLPE 829 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 + + + R+ +Q + DI+ + M+ ++ Sbjct: 830 I--------QSRNGMRRKAAERA-AINAPMQGTAADIIKKAMLLVDEWIQTEGDGRVKLL 880 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 + VHDE+V E ++ + LM S +PL AE Sbjct: 881 MQVHDELVFEVQESALTEIESKVQELMESAAE--LDVPLVAEA 921 >gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222] gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222] Length = 933 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 110/674 (16%), Positives = 202/674 (29%), Gaps = 166/674 (24%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD + + LK LE+ V N ++ +VL Sbjct: 376 SFATDEGVAAYVPVAHDYLDAPQQLDRDWVLEQLKPILEDDAQAKVGQNLKYDMSVLARY 435 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ +++ + K T Sbjct: 436 ---GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQ 492 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190 + Y D VT + RL E L + Sbjct: 493 I----------ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMS 542 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D L +Q + V +L+Q+ + + ++L+ LF + GL Sbjct: 543 RIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 601 Query: 251 LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T + T + VL P + Sbjct: 602 VIKKTPSGAPSTNEEVLQELALDYPLPKLI------------------------------ 631 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 +++ G ++ P R H Q +T ++DP+ I Sbjct: 632 -IEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 690 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G++ L+AF+ G+D++ T A V Sbjct: 691 RRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDI 750 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 VT +QR K + L Y A +A G+ H + T Sbjct: 751 ESVTTEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQHYMDT------------- 794 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + +++ V + + A + Sbjct: 795 ----------------------------YFERYPGVMQYMEDTRSAASE----------- 815 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 + V +Y GR L ++ + + R+ Sbjct: 816 -QGFVETIY--------------GRRLHLPEI--------QSRNGMRRKAAERA-AINAP 851 Query: 602 VQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653 +Q + DI+ + M+ +++ VHDE+V E ++ + LM S Sbjct: 852 MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAEIESKVQELMES 911 Query: 654 NPSWAKGLPLKAEG 667 +PL AE Sbjct: 912 AAE--LEVPLVAEA 923 >gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451] gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451] Length = 938 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 104/594 (17%), Positives = 199/594 (33%), Gaps = 87/594 (14%) Query: 33 FAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKA 82 +F + HD PQ L A LE+ V N ++ +V+ Sbjct: 380 VSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQLKPLLEDESKAKVGQNLKYDASVMAR 439 Query: 83 CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 +++ R T++ + N + AL+ +++ + T Sbjct: 440 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190 + + +Y D VT + +R+ PL + E L + Sbjct: 498 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLS 547 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D L +Q + + +L+++ L G + ++L+T LF + L Sbjct: 548 RIERTGVMIDDMLLSAQSQEIALRLDELEKKAYELA-GQPFNLSSPKQLQTILFEQMKLP 606 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + Sbjct: 607 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 636 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 +++ G ++ P P R H Q +T ++DP+ I Sbjct: 637 -IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 695 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V Sbjct: 696 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 755 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + + +E Sbjct: 756 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQEYMD-----KYFERYPGV 807 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--II 539 ++M++ A E ++ T R + + SR +A G A II Sbjct: 808 MQYMEDTRSR-AAELGYVETIFGR-RLHLPEITSRNGIRRKAAERAAINAPMQGTAADII 865 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + V ++ + L++ LV+ ++ S + + +QL Sbjct: 866 KKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESAAE 919 >gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] Length = 932 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%) Query: 15 DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62 D G+ + + L F HD PQ LK LE Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120 + V N F++++L I + +L + + A + + Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K +E+ + T + A G Y D VT ++ L P Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520 Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + I G +D + ++ + + +L+++ L Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERAGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR----- 634 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 G ++ P P R H Q +T Sbjct: 635 --------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + DP+ I +R IA +G ++ AD + IE R++A ++ + L Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F +VT +QR K + L Y A +A G+ Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + R + Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +Q E G GR L D+ + Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ + +++ VHDE+V Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E ++ +A + LM + A +PLK + Sbjct: 890 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 921 >gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] Length = 984 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 122/634 (19%), Positives = 206/634 (32%), Gaps = 147/634 (23%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 PV L D P L+ LE+ VT +A N+ ++ VL++ + + +L Sbjct: 446 EPVNLPPFDSDACAP--LRAMLEDPSVTKIAQNAKYDLLVLRSS---GVRVAGVGFDTML 500 Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 A P + AL+ M L+ KG+T P Sbjct: 501 ASYVLDPGRRSHGLDLLALEQLGHTMTAYDTLVG---KGKTQ-------LPFDVAPVDTA 550 Query: 158 GEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTL 207 +Y DV +T + +LEP+ ++ E L + + G +D+ +L Sbjct: 551 RDYSCEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSVLAEMEWEGIAIDLDWFASL 610 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267 ER +++Q + + G + KL+ LF + GL ++ T T S + Sbjct: 611 KARFAAERGRVEQAIYAEA-GEEFNINSNPKLRAILFEKLGLPVKKKTATGPSTDASVLQ 669 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 +L + V + +++ + P Sbjct: 670 ELAEE-GHVLPTLL--------------------------MEYREIFKLEGTYIDALPRL 702 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLA 382 PR R H Q ++ + DP+ I + +R + EG +L+ AD + Sbjct: 703 VHPRDRRLHTSYSQTVSATGRLSSHDPNLQNIPIRRELGRDIRRGFVPREGWRLLSADYS 762 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA ++ + + AF+ G D++ T A F V VT + RA K + A Y Sbjct: 763 QIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARAKTINFATIYG 822 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GA A + T +A+ F E Sbjct: 823 QGAHALSRQLRITN-------------------AEAKAFIETYFE--------------- 848 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561 R + + L Q G + ++RR +P + Sbjct: 849 -------------RFAGVRGFLDQCVVDARARGYVETLFKRRRYIPEL------------ 883 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 R+ R G R N +Q + D++ M+N A Sbjct: 884 --KERNFNIRAFGE-RVAQNAP------------------IQGSAADLIKIAMINVRNAI 922 Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNASMLYH 649 ++L VHDE+V E P + S L Sbjct: 923 DAEGLASRMLLQVHDELVFELPVEEADTLSALVK 956 >gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] Length = 932 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 110/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%) Query: 15 DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62 D G+ + + L F HD PQ LK LE Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120 + V N F++++L I + +L + + A + + Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K +E+ + T + A G Y D VT ++ L P Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520 Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + I G +D + ++ + + +L+++ L Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ L+ + L + T +T + VL+ P + Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILE------- 632 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + G ++ P P R H Q +T Sbjct: 633 ------------------------YRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + DP+ I +R IA +G ++ AD + IE R++A ++ + L Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F +VT +QR K + L Y A +A G+ Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + R + Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +Q E G GR L D+ + Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ + +++ VHDE+V Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E ++ +A + LM + A +PLK + Sbjct: 890 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 921 >gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna Polymerase I Complexed With DTMP gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna Polymerase I Complexed With Deoxynucleoside Triphosphate And Pyrophosphate Length = 605 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 116/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 81 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G ++ P P+ R H Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 564 EVHKDDVDAVAKQIHQLME 582 >gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] Length = 891 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 108/594 (18%), Positives = 192/594 (32%), Gaps = 89/594 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHD--PVMPQV-- 56 + +D ET S L V+ F F + V + C +P+ Sbjct: 318 ISVDTETTSLNPLL----------AEVVGFCFAVEPGHGWYVPVGHCGGGAEEQLPRDEV 367 Query: 57 ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111 ++ LE+ + V N ++ VL+ I + + +L P + Sbjct: 368 VAQVQPLLEDATLAKVGQNLKYDALVLRRA---GIALRGVVADTMLQSYLLYPAARSHGL 424 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 A KM E+ K + +D A + Y D +T ++ Sbjct: 425 DALAADHLGYKMISYSEVAGTGKK----QIGFD------EVALDVATRYAAEDADITLQL 474 Query: 172 FKRL---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 ++R E + E L + + G VD L+ +L+Q++ Sbjct: 475 YQRFDAELDGTLRELFETVEMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSIKQLEQQI 534 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 L G + ++L LF + L T+T + K L + V Sbjct: 535 YELA-GEEFNINSPKQLGVILFEKLDLPHGKKTKTGWSTAVDVLKNLADKHDVVAL---- 589 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 LQ+ ++ P P R H +Q Sbjct: 590 ------------------------ILQYRSLAKLKGTYTDALPLLIHPDSGRIHTSFNQA 625 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T +SDP+ I +R + G+ L+ AD + IE RV+A MA E Sbjct: 626 VTATGRLSSSDPNLQNIPIRSEEGRAIREAFVPDAGQVLLAADYSQIELRVMAHMADEPI 685 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++F GED++ T + F+V P V + R K + + Y GA + A G+ Sbjct: 686 LQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAKTINFGVLYGMGAFSL---AKDLGI 742 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + E + F ++ EH + +G C A +S+ Sbjct: 743 SNKEAKQYID--HYFERYPAVLEFIEQQKQFGREHLYVETLLGRRC-----AVSDINSKN 795 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 ++ + + G A K V + +D ++L LV+ Sbjct: 796 GQVRSYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVLQVHDELVF 849 >gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227] Length = 605 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 116/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 81 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G ++ P P+ R H Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 507 SSNGARRAAAERTAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 564 EVHKDDVDAVAKQIHQLME 582 >gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 128/708 (18%), Positives = 215/708 (30%), Gaps = 178/708 (25%) Query: 7 DFET--RSPIDLTKCGICK-YAEDVCVILFAFGFDDHP-----VELWDCVHD-----PVM 53 D ET +D+ + YA+ L P V L D + Sbjct: 323 DLETCQAFALDVETTALHPMYAD-----LVGIALATAPDRSYYVPLGHTTGDTQLDIEQV 377 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 Q L L + + AH+ ++ VL+ P ++A +A+ Sbjct: 378 LQRLAPFLRHPEKQRYAHHGKYDALVLERA---GFPRPHIDFDTMIAAYLLGENAVGLKE 434 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A +MEE ELI R K R +Y DV T + + Sbjct: 435 LAFTKLGWEMEEITELIGRGKKQ----------LTMDRAEIARVTQYACADVEATYRLVE 484 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + G +DV L+ ++D + L++ + Sbjct: 485 VLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIY 544 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280 L G + ++L T LF E GL T+T Q VL + + P + R Sbjct: 545 ELA-GHPLNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYR 603 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + P Q P+ R H Sbjct: 604 QLL-------------------------------KLKSTYVDALPRQVHPQTGRVHTIFH 632 Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIAS---------EGKKLVVADLAGIEA 386 Q + +SDP+ I + VR IA E L+ D + IE Sbjct: 633 QTVAATGRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIEL 692 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A + + L+AF G+D++ T + F V VT + R I KV+ + Y A Sbjct: 693 RLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAY 752 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +A TG++ R Sbjct: 753 ---GLARDTGMSRQDAQ-----------------------------------------RF 768 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +A+ Q+ V+ E + + + + + R+R LP Sbjct: 769 IEAYFQRFPGVARYLEETRRRAAE-LGYVETLFGRRRY-----------------LP--- 807 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---- 622 + N RQ +Q + DI+ M+ + Sbjct: 808 ---------EITSSNPARRQAAERMA-----VNMPLQGTAADIMKLAMIAVHRPLAERGL 853 Query: 623 --DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 ++L VHDE+V E P+++ ++ M+ +PL+ + Sbjct: 854 RSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVE--LSVPLEVDA 899 >gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Manganese gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc Only gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And Manganese gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate And Europium (Iii) Ion gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Short Dna Fragment Carrying 2'-0- Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3' gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Tetramer Carrying 2'-O-(3-Aminopropyl)- Rna Modification 5'-D(Tt)-Ap(U)-D(T)-3' gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431] gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G] gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180] gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357] gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74] Length = 605 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 116/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 81 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G ++ P P+ R H Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 564 EVHKDDVDAVAKQIHQLME 582 >gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01] gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01] Length = 937 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 108/643 (16%), Positives = 197/643 (30%), Gaps = 156/643 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N ++ +VL I + +LA N + Sbjct: 411 EQLKPILEDDTQAKVGQNLKYDMSVLARY---GIEMKGIKHDTMLASYVFNSVGGKHDMD 467 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ +++ + K T + Y D VT + Sbjct: 468 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELGEASPYAAEDADVTLRLH 517 Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 RL E L + I G +D L +Q + V +L+Q+ Sbjct: 518 NRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQK 577 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + + ++L+ LF + GL + T + T + VL P + Sbjct: 578 AYEIA-EQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLI- 635 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +++ G ++ P R H Sbjct: 636 ------------------------------IEYRGLAKLKSTYTDKLPKMINAETGRVHT 665 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R +A G K++ D + IE R++A + Sbjct: 666 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHL 725 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L+AF+ G+D++ T A VA QVT +QR K + L Y A +A Sbjct: 726 SGDKALLEAFQQGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIYGMSAF---GLA 782 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ H + T + + Sbjct: 783 KQLGIPRGEAQHYMDT-----------------------------------------YFE 801 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + + A + + V +Y GR L + Sbjct: 802 RYPGVMQYMEDTRSAASE------------QGFVETIY--------------GRRLHLPE 835 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 + + + R+ +Q + DI+ + M+ ++ Sbjct: 836 I--------QSRNGMRRKAAERA-AINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLL 886 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 + VHDE+V E ++ + LM S +PL AE Sbjct: 887 MQVHDELVFEVQESALAEIESKVQQLMESAAD--LEVPLVAEA 927 >gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120] Length = 810 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 237 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 286 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 287 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 343 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 344 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDSDVTLQLHLK 393 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 394 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 453 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 454 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 512 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 513 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 541 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 542 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 601 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 602 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 658 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 659 LNIPRK----------------EAQKYMDLYFERYP------------------------ 678 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 679 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 711 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 712 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 768 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 769 EVHKDDVDAVAKQIHQLME 787 >gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola] gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A] gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola] gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A] Length = 932 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%) Query: 15 DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62 D G+ + + L F HD PQ LK LE Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120 + V N F++++L I + +L + + A + + Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K +E+ + T + A G Y D VT ++ L P Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520 Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + I G +D + ++ + + +L+++ L Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR----- 634 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 G ++ P P R H Q +T Sbjct: 635 --------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + DP+ I +R IA +G ++ AD + IE R++A ++ + L Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F +VT +QR K + L Y A +A G+ Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + R + Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +Q E G GR L D+ + Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ + +++ VHDE+V Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E ++ +A + LM + A +PLK + Sbjct: 890 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 921 >gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10] gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua] gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516] gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92] gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516] gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003] gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10] gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516] gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua] gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92] gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516] gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004] gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003] gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 932 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%) Query: 15 DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62 D G+ + + L F HD PQ LK LE Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120 + V N F++++L I + +L + + A + + Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K +E+ + T + A G Y D VT ++ L P Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520 Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + I G +D + ++ + + +L+++ L Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR----- 634 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 G ++ P P R H Q +T Sbjct: 635 --------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + DP+ I +R IA +G ++ AD + IE R++A ++ + L Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F +VT +QR K + L Y A +A G+ Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + R + Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +Q E G GR L D+ + Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ + +++ VHDE+V Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E ++ +A + LM + A +PLK + Sbjct: 890 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 921 >gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4] gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4] Length = 930 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 100/595 (16%), Positives = 184/595 (30%), Gaps = 89/595 (14%) Query: 33 FAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 +F D+ HD + + LK LE+ V N ++ +VL Sbjct: 372 VSFATDEGVAAYVPLAHDYLDAPQQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLAR 431 Query: 83 CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 I + +LA N + AL+ +++ + T Sbjct: 432 Y---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFN 488 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLD 189 + Y D VT + RL E L + Sbjct: 489 QI----------DLNEAAPYAAEDADVTLRLHNRLAANIEQDKKLKAVYEEIEMPLVPVL 538 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 I G +D + + +L+Q+ + + ++L+ LF + GL Sbjct: 539 SRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQALLFEKMGL 597 Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + T +T + VL P + Sbjct: 598 PVIKKTPSGTPSTNEEVLQELALDYPLPKLILE--------------------------- 630 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 + G ++ P P R H Q +T ++DP+ I Sbjct: 631 ----YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 686 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 687 GRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHTATAAEIMGVS 746 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 V+ +QR K + L Y A +A G+ + + +E Sbjct: 747 IEDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPG 798 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--I 538 ++M E+ A E ++ T R + + SR +A G A I Sbjct: 799 VMQYM-EDTRSAAAEQGYVETIFGR-RLHLPEIQSRNGMRRKAAERAAINAPMQGTAADI 856 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 I + V + + L++ LV+ ++ S + + ++L Sbjct: 857 IKKAMLLVGRWIEEHGDGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 911 >gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] Length = 913 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 112/595 (18%), Positives = 191/595 (32%), Gaps = 87/595 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56 + D ET + ID A+ V+ +F + H + + Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 LK LE+ V ++ ++ VL + I + +L + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169 ALK +++ + K T + + A G Y D VT Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492 Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++++LE + E L + I G VD L ++ + + L++ Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + L G + ++L L+ + GL + T T + L A Q F Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +Q+ S+ P Q PR R H Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R +A +G KL+ AD + IE R++A +A + Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G D++ T A F V V+ DQR K + L Y A +A Sbjct: 706 DGLLDAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + A E A E F+ T R + + HS Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + + + G A KR V + ++ + ++L LV Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870 >gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565] gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565] Length = 921 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 103/558 (18%), Positives = 180/558 (32%), Gaps = 75/558 (13%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 F + PV+L + V+ LK LE+ V N ++R VL N DI + Sbjct: 377 FGHDYLGAPVQL----SEAVVLGKLKPLLEDPTCLKVGQNLKYDRNVL---LNHDIDLQG 429 Query: 93 WICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 +L N S A + + +++ + K T + Sbjct: 430 IAYDTMLESYVLNSTASRHDMDSLAKRYLGVETTSFEDIAGKGVKQLTFNQI-------- 481 Query: 151 REAWRLFGEYCKGDVTVTREIFK----RLEPLS-------SKEQELWYLDQTINDRGYCV 199 Y D +T + + +LE + E L + + G + Sbjct: 482 --ELEQAAPYAAEDADITLRLHQTLWGQLEAVPGLAKVFSEIELPLLPVLARMELLGTTI 539 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D L H +Q +++ +L+++ L G + ++L LF + GL + T Sbjct: 540 DPKLLHQQSQEIELRLAELEKQAHELA-GQEFNLSSPKQLGEILFTKLGLPIIKKTPKGA 598 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + ++ M + G ++ Sbjct: 599 PSTAEEVLAELAETYELPQLLM---------------------------EHRGLAKLKST 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374 P P+ R H Q + +SDP+ I +R I S G Sbjct: 632 YTDKLPLMIKPQTGRVHTSYHQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGY 691 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 KLV AD + IE R++A ++G++ L AF G+D++ T A F VA VT D R K Sbjct: 692 KLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDMRRSAKA 751 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + L Y A +A G+ + E + + ++ Sbjct: 752 INFGLIYGMSAF---GLAKQLGIGRAEAQKYMD--LYFERYPGVLEYMERTRQQAEAQGY 806 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMK 552 + G SR + L +A G A II R +V Sbjct: 807 VETLFGRRL-----YLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDSWIRG 861 Query: 553 KDKNNLILMLPSGRSLVY 570 + ++ +++ LV+ Sbjct: 862 IEDESIRMLMQVHDELVF 879 >gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v] Length = 605 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 117/679 (17%), Positives = 212/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 81 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G ++ P P+ R H Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 454 LNIPRK----------------EAQKYMDLYFERYP------------------------ 473 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 474 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 506 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 563 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D E A ++ LM Sbjct: 564 EVHKDDLEAVAKKIHQLME 582 >gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573] gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573] Length = 938 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 104/594 (17%), Positives = 200/594 (33%), Gaps = 87/594 (14%) Query: 33 FAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKA 82 +F + HD PQ L K LE+ V N ++ +V+ Sbjct: 380 VSFAVAEGEAAYIPVAHDYLDAPQQLDRDWVIAQLKPLLEDESKAKVGQNLKYDASVMAR 439 Query: 83 CFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 +++ R T++ + N + AL+ +++ + T Sbjct: 440 Y-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQ 190 + + +Y D VT + +R+ PL + E L + Sbjct: 498 I----------DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLS 547 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D L +Q + + +L+++ L G + ++L+T LF + L Sbjct: 548 RIERTGVMIDDMLLSAQSQEIALRLDELEKKAYELA-GQPFNLSSPKQLQTILFEQMKLP 606 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + Sbjct: 607 VLQKTPSGTPSTNEEVLQELALDYPLPKVL------------------------------ 636 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 +++ G ++ P P R H Q +T ++DP+ I Sbjct: 637 -IEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 695 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V Sbjct: 696 RRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPI 755 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + + +E Sbjct: 756 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQEYMD-----KYFERYPGV 807 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--II 539 ++M++ A E ++ T R + + SR + +A G A II Sbjct: 808 MQYMEDTRSR-AAELGYVETIFGR-RLHLPEITSRNAMRRKAAERAAINAPMQGTAADII 865 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + V ++ + L++ LV+ ++ S + + +QL Sbjct: 866 KKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESAAE 919 >gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968] gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150] gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968] gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150] Length = 894 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 92/588 (15%), Positives = 190/588 (32%), Gaps = 80/588 (13%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------A 60 E ID + ++ + ++ HD PQ+L+E Sbjct: 319 EAFC-IDTETTSLD--VMMAEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLTALNPI 375 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKL 118 LEN + + N ++ +VL+ N I + +L + ALK Sbjct: 376 LENPTIKKIGQNLKYDYSVLR---NHGITLKGIYYDTMLESYVLNSGSGRHDMDSLALKY 432 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K +E+ + K + + G Y D +T ++ +L PL Sbjct: 433 LGHKTISYEEIAGKGAKQLRFDQIPV----------EKAGAYAAEDADITLQLHHKLYPL 482 Query: 179 SSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + + G +D A + + L++E L G Sbjct: 483 IPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQHGERLKERIRTLEEEALHLA-GK 541 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + ++L+ LF L + T T + + ++ R+ A Sbjct: 542 PFNLNSPKQLQEILFDSHKLPIIAKTPTGQPSTAEAVLQELA-----YDYRLAA------ 590 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L++ ++ P + P+ +R H +Q +T Sbjct: 591 ----------------VILEYRSLTKLVSTYIDALPKKINPKTNRVHTSYNQAVTATGRL 634 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +S+P+ I +R+ IA E ++ AD + IE R++A ++ ++ LKAF Sbjct: 635 SSSEPNLQNIPIRSEEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDENLLKAFAN 694 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T + F + ++ +QR K + L Y + +A G+ + Sbjct: 695 GWDVHAATASEIFQIPLEEINNEQRRRAKAINFGLIYGMSSF---GLAKQIGVERQDAQY 751 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + T + + + ++ + G + ++R Sbjct: 752 YIDT--YFQRYPKVLEYMNRTRQQAHHQGYVETLFGRRL-----YLPEINARNLMRQKAA 804 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMK--KDKNNLILMLPSGRSLVY 570 + G A K + + + +K +++ LV+ Sbjct: 805 ERTAINAPMQGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHDELVF 852 >gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica] Length = 929 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 109/643 (16%), Positives = 199/643 (30%), Gaps = 161/643 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110 LK LE++++ + N F+ VL D + ++ V Sbjct: 404 LKPLLEDSNLLKIGQNIKFDCGVLVRYGIELQGIAYDTMLESYVLNSVAGM-----GRHD 458 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A + + K +E+ + T + Y D VT + Sbjct: 459 MDSLAERHLNYKTTTFEEIAGKGKNQLTFNQVPV----------EQAAMYAAEDADVTLQ 508 Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + + P K E L + + G ++ + ++ + V +L+ Sbjct: 509 LHQVIWPQLEKVPALEKVFLETEMPLIMVLSRMERAGVLINSDILAEHSKEIAVRLDELE 568 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275 +E L G V + ++L+T LF + L + T +T + VL Sbjct: 569 KEAHELA-GEVFNLASPKQLQTILFEKLNLPVVKKTPGGAPSTNEEVLEELVDHHELPKV 627 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R G ++ P P R Sbjct: 628 ILEHR-------------------------------GLAKLKSTYTDKLPQMVHPLTKRV 656 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H Q +T + DP+ I +R IASEG +++ AD + IE R++A Sbjct: 657 HTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIASEGYRIMAADYSQIELRIMA 716 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ +Q LKAF G+D++ T A F+V QVT +QR K + L Y A Sbjct: 717 HLSQDQGLLKAFAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMSAF---G 773 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 ++ G+ + Sbjct: 774 LSRQLGIPRGEAQ--------------------------------------------RYM 789 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + + + EQ E G + +GR L Sbjct: 790 DLYFERYPGVLAYMERTREQAEEQG-----------------------YVETLAGRRLYL 826 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624 D+ + N T R+ +Q + DI+ + M+ + Sbjct: 827 PDIKS----RNGTRRKAAEREA-----INAPMQGTAADIIKKAMIAVDDWIISEAPKVRM 877 Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ VHDE+V E +++ E + LM + +PL+ + Sbjct: 878 IMQVHDELVFEVHESELENTEQKIRELMEKSVV--LDVPLQVD 918 >gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14] gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14] Length = 923 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 99/612 (16%), Positives = 188/612 (30%), Gaps = 91/612 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D G+ Y V+ +F ++ HD + + LK LE+ Sbjct: 349 DTETDGLD-YM-TANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRDWVLEQLKPLLEDP 406 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + N F+ +++ I + + +L N + AL+ K Sbjct: 407 KQAKIGQNLKFDASIVARY---GIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHK 463 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 +E+ + K T + G Y D +T + L P Sbjct: 464 NISFEEVAGKGKKQLTFNQI----------DLEQAGPYAAEDADITLRLHNTLYPKVEAD 513 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + + G VD L + + +++++ + Sbjct: 514 DKLNHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAARLDEIEKKAFEIA-EQEF 572 Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF + GL + T +T + VL P + R Sbjct: 573 NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLLLEYR------- 625 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 626 ------------------------GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATG 661 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R +A G K++ D + IE R++A ++G++ L AF Sbjct: 662 RLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAF 721 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T A ++ +V+ +QR K + L Y A +A + N Sbjct: 722 RHGKDIHAATAAEILSLDIEEVSSEQRRRAKAINFGLIYGMSAF---GLAKQLDMGRNEA 778 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + N E + + + E + G SR Sbjct: 779 QNYM--NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRL-----YLPDIKSRNGLRRK 831 Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +A G A II V ++ + N+ L++ LV+ + + Sbjct: 832 AAERAAINAPMQGTAADIIKLAMIAVDGWVQQQPEGNVRLLMQVHDELVFEVKESALEAV 891 Query: 581 NTTTRQLTREYT 592 + + L + Sbjct: 892 TASVKALMEQAA 903 >gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40] gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40] Length = 926 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 96/564 (17%), Positives = 172/564 (30%), Gaps = 89/564 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64 D + Y E V+ +F HD + + LK LE+ Sbjct: 353 DTETTSLN-YME-AKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQVLGKLKPLLEDE 410 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 +V V N ++ +VL N I + +L N + AL Sbjct: 411 NVKKVGQNLKYDASVLA---NHGIALQGIAFDTMLESYVVNSTANRHDMDTLALAHLGHT 467 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 +E+ + K T + Y D +T + + L P Sbjct: 468 NISFEEIAGKGAKQLTFNQI----------QLDQAAPYAAEDADITLRLHQALWPQVEAV 517 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + + G +D + + + + ++ +E L G Sbjct: 518 EGIKSLFENVELPLVPVLSKVERTGALIDATILGQQSAELAADLERIQREAWELA-GEEF 576 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + G+ + T+T T + VL P + R Sbjct: 577 NLASPKQLGVILFEKLGIPVIKKTKTGAPSTAEEVLQELALDYPLPALLLEQR------- 629 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H +Q +T Sbjct: 630 ------------------------GLAKLKSTYTDKLPTMINPHTGRVHTSYNQAVTATG 665 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++DP+ I VR IA EG ++V AD + IE R++A ++G++ AF Sbjct: 666 RLSSTDPNLQNIPIKTEAGRRVRKAFIAPEGYRIVAADYSQIELRIMAHLSGDEGLTNAF 725 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A F + VT +QR K + L Y A +A + N Sbjct: 726 NQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINFGLIYGMSAF---GLARQLHIGRNDA 782 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + T + + + ++ EH + +G + ++ Sbjct: 783 QRYIDT--YFDRYPGVARYMEDIRVFAKEHGYVETLMGRRL-----YLPEINASNGMRRQ 835 Query: 523 ELHQAFEQTIENGKAIIARKRRDV 546 + G A K+ + Sbjct: 836 AAERTAINAPMQGSAADIIKKAMI 859 >gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex Length = 605 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 105/621 (16%), Positives = 194/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V N ++R +L N I + +L N + Sbjct: 80 ELLKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMD 136 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A + K +E+ + T + A G Y D VT ++ Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 186 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P K E L + I G +D + H ++ + + +L+++ Sbjct: 187 LKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKK 246 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 247 AHEIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 305 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P+ R H Sbjct: 306 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 334 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 335 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 394 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 395 SRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLA 451 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + +A+ + E +P Sbjct: 452 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 473 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 474 ------GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPD 504 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + G + I +A+ I + + A + +++ VHDE+ Sbjct: 505 IKSSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 561 Query: 633 VCET-PDTDEFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 562 VFEVHKDDVDAVAKQIHQLME 582 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 114/691 (16%), Positives = 208/691 (30%), Gaps = 168/691 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEALENT 64 D G+ ++ + H H +P+ L+ A N Sbjct: 316 DTETTGLDP--RTAELVGISISLQAHEAFYIPVGHRYLGMPDQLPRETVLERLRPAFGNP 373 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQK 122 + V N F+ +L + + C +L P A + + K Sbjct: 374 AIRKVGQNLKFDLQILAVA---GLEVQGSWCDTMLCSYLLNPSRGGHGLDALAQEHLNHK 430 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 M E+ G + Y D T + ++L P+ + Sbjct: 431 MISYDEV-----TGSGKNRIC-----FSEVEVEKATRYAAEDADATWLLHEKLLPMLKEQ 480 Query: 182 ---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + + G +D+A L +L++ + L G + Sbjct: 481 GLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGNGFGQRMQELEKRIIELAGG-PFN 539 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L+ LF GL T+ +T VL+ + A + Sbjct: 540 LNSPKQLEEVLFERLGLQAGKKTKGKTGRSTDNEVLTGLAEEHEIAKLLL---------- 589 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + G ++ R R H +Q +T Sbjct: 590 ---------------------DYRGLTKLKSTYTDALAKLTD-RQGRVHTSYNQAVTATG 627 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA G ++ AD + IE RVLA ++ + AF Sbjct: 628 RLSSSDPNLQNIPIRTDEGRRIREAFIAPPGCVILAADYSQIELRVLAHLSQDPVFCDAF 687 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ED++ T + F + P VT + R K + + Y GA + A G+ N Sbjct: 688 SQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQGAFSL---AKQLGVARNVA 744 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + ++++HS + Sbjct: 745 EKFIAA-----------------------------------------YKERHSGAIAFLD 763 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + ++T I+ RK +P+ + NL RS R+ +N Sbjct: 764 SCIASAKET-GYVTTILGRK---LPIADITSSNGNL-------RSFA------ERNAINY 806 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 +Q + DI+ + M+ +A +++ VHDE+V E Sbjct: 807 P------------------IQGSAADIIKQAMLGVDRAIRAEGLQSRLIMQVHDELVFEV 848 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +T+ E ++ M+ A +PLK + Sbjct: 849 LETELEQMRELVNREMSQAV--ALKVPLKVD 877 >gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32] gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32] Length = 933 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 109/643 (16%), Positives = 195/643 (30%), Gaps = 156/643 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N ++ +VL I + +LA N + Sbjct: 407 EQLKPILEDDAQAKVGQNLKYDMSVLARY---GIEMKGIKHDTMLASYVFNSVGGKHDMD 463 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ +++ + K T + Y D VT + Sbjct: 464 SLALRFLQHSCISFEQIAGKGKKQLTFNQI----------ELGEASPYAAEDADVTLRLH 513 Query: 173 KRL-------EPLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 RL E L E L + I G +D L +Q + V +L+Q+ Sbjct: 514 NRLMENIEQDEKLKTIYGEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQK 573 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + + ++L+ LF + GL + T + T + VL P + Sbjct: 574 AYEIA-EQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLII 632 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P R H Sbjct: 633 EYR-------------------------------GLAKLKSTYTDKLPKMINAETGRVHT 661 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R +A G K++ D + IE R++A + Sbjct: 662 SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHL 721 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L+AF+ G+D++ T A V VT +QR K + L Y A +A Sbjct: 722 SGDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIYGMSAF---GLA 778 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ H + T + + Sbjct: 779 KQLGIPRGEAQHYMDT-----------------------------------------YFE 797 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V + + A + + V +Y GR L + Sbjct: 798 RYPGVMQYMEDTRSAASE------------QGFVETIY--------------GRRLHLPE 831 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 + + + R+ +Q + DI+ + M+ ++ Sbjct: 832 I--------QSRNGMRRKAAERA-AINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLL 882 Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 + VHDE+V E ++ + LM S +PL AE Sbjct: 883 MQVHDELVFEVEESALAEIESKVQELMESAAE--LEVPLVAEA 923 >gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 105/621 (16%), Positives = 194/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V N ++R +L N I + +L N + Sbjct: 80 ELLKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMD 136 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A + K +E+ + T + A G Y D VT ++ Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 186 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P K E L + I G +D + H ++ + + +L+++ Sbjct: 187 LKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKK 246 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 247 AHEIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 305 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P+ R H Sbjct: 306 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 334 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 335 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 394 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 395 SRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLA 451 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + +A+ + E +P Sbjct: 452 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 473 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 474 ------GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPD 504 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + G + I +A+ I + + A + +++ VHDE+ Sbjct: 505 IKSSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 561 Query: 633 VCET-PDTDEFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 562 VFEVHKDDVDAVAKQIHQLME 582 >gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32] gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32] Length = 922 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 113/674 (16%), Positives = 197/674 (29%), Gaps = 152/674 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALEN 63 +D + Y ++ +F + HD V PQ L + LE+ Sbjct: 347 VDTETTSLD-YM-VAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILED 404 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 V V N ++ +VL N I + + +L N + S G A+K Sbjct: 405 DKVKKVGQNLKYDISVLA---NAGIKLQGVVFDTMLESYVFNSVASRHDMDGLAIKYLGH 461 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +++ + K T + + Y D +T + + L P K Sbjct: 462 KNIGFEDIAGKGAKQLTFNQI----------PLEVAAPYAAEDADITLRLHQHLWPRLEK 511 Query: 182 EQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E +L + I +G +D L + + + L+++ + G Sbjct: 512 EPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIA-GEK 570 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 571 FNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 626 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P + R H Q Sbjct: 627 ---------------------------SKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 659 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA G+K++ AD + IE R++A ++ + LKA Sbjct: 660 GRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKA 719 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F VT +QR K + L Y A +A + N Sbjct: 720 FAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRNE 776 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + R+M+E A E ++ T R + + R + Sbjct: 777 AQTYIDT-----YFARYPGVLRYMEETRA-GAAELGYVSTLFGR-RLYLPEIRDRNAMRR 829 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +A G A K+ + Sbjct: 830 QGAERAAINAPMQGTAADIIKKAMI----------------------------------- 854 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 Q + T G M ++ VHDE+V E Sbjct: 855 -NIAQWIKTETQG----------------EIAM----------IMQVHDELVFEVDADKA 887 Query: 642 FNASM-LYHLMTSN 654 + LM Sbjct: 888 ETLKQKVCELMAKA 901 >gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953] gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] Length = 932 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 172/694 (24%) Query: 15 DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62 D G+ + + L F HD PQ LK LE Sbjct: 358 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 413 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120 + V N F++++L I + +L + + A + + Sbjct: 414 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 470 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K +E+ + T + A G Y D VT ++ L P Sbjct: 471 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 520 Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + I G +D + ++ + + +L+++ L Sbjct: 521 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 579 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 580 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR----- 634 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 G ++ P P R H Q +T Sbjct: 635 --------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 668 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + DP+ I +R IA +G ++ AD + IE R++A ++ + L Sbjct: 669 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 728 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F +VT +QR K + L Y A +A G+ Sbjct: 729 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 785 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + R + Sbjct: 786 EAQ--------------------------------------------RYMDLYFERYPGV 801 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +Q E G GR L D+ + Sbjct: 802 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 834 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ + +++ VHDE+V Sbjct: 835 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 889 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E ++ +A + LM + A +PLK + Sbjct: 890 FEVHESVLQSAEQKIRELMEKSMQLA--VPLKVD 921 >gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299] gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299] Length = 928 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 116/679 (17%), Positives = 211/679 (31%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + + T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQSIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLDGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ET-PDTDEFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHKDDVDAVAKQIHQLME 905 >gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3] gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3] Length = 916 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 112/688 (16%), Positives = 199/688 (28%), Gaps = 168/688 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEAL- 61 + ID ET S Y E ++ +F + HD V P+ L +AL Sbjct: 339 IAIDTETTSLN---------YME-AELVGISFAVEAGKAAYLPLSHDYVDAPEQLDKALV 388 Query: 62 --------ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPS 107 EN + V N ++ ++ D + ++ V ++ N Sbjct: 389 FEKLTPLLENEAIKKVGQNLKYDISIFANAGIKLKGVQFDTMLESYVFNSVASKHNMDDL 448 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 ALK +G K +E+ + K T + Y D + Sbjct: 449 ALKYLG-------HKNISFEEIAGKGAKQLTFNQI----------PLETAAPYAAEDADI 491 Query: 168 TREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T + + L P K E L + TI +G +D L ++ + + Sbjct: 492 TLRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGVLIDSMLLGQQSEELARKID 551 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272 L + + G + ++L+ F + G + T T + VL P Sbjct: 552 DLQTKAHEIA-GQPFNLASPKQLQELFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 610 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R A + P + Sbjct: 611 PKIILEHRSLA-------------------------------KLKSTYTDKLPLMVNAKS 639 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +S+P+ I +R IA EG+K++ AD + IE R Sbjct: 640 GRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGRKILAADYSQIELR 699 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++ ++ L AF G+D++ T A F+V ++VT DQR K + L Y A Sbjct: 700 IMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAF- 758 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 +A + + T + + N+ + + G Sbjct: 759 --GLAKQLDIPRAEAQRYIDT--YFKRYPGVLNYMEETRAIATDLGYVSTLFGRRL---- 810 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 R + +A G A K+ + Sbjct: 811 -YLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI--------------------- 848 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 + T G I +++ Sbjct: 849 ---------------NVAKWIETETNG-----EIT---------------------MIMQ 867 Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSN 654 VHDE+V E + + + LM + Sbjct: 868 VHDELVFEVDADKADSLQVKICELMAAA 895 >gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105] gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105] Length = 927 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 115/642 (17%), Positives = 197/642 (30%), Gaps = 159/642 (24%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D +P +P LK E++D +A N+ ++ L N D+ + +LA Sbjct: 389 DLTAEPQLPLAEVLAFLKPWFEDSDSPKIAQNAKYD---LHVMANHDVWVKGLFEDTMLA 445 Query: 101 RSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 AL+ + + +E+ + T + + + Sbjct: 446 SYILEAHKPHGMDALALRWLNYNTIKYEEVAGKGASQITFDQV----------PIDTATK 495 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLN 208 Y D VT + L+ K EL L + + G +D + Sbjct: 496 YAAEDAEVTLRLAHALKAELDKVPELAKLYRDVELPFGQVLFEVERNGVLIDSDKLEAQS 555 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLS 264 + + ++++ L G + +++ LF + GL + T +T + VLS Sbjct: 556 AEIADKLKLIEEQAFELAGGS-FNLNSPKQIGELLFDKLGLPVVKKTASGAPSTDEEVLS 614 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P ++ +R A + Sbjct: 615 KLAEDYPLPAKLLEHRSLA-------------------------------KLKSTYTDKL 643 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379 P R R H Q + ++DP+ I VR IA+ G LV A Sbjct: 644 PRMVNARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRVREAFIAAPGCVLVSA 703 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++G++ + AF G D++ T + F V +VT D R KV+ L Sbjct: 704 DYSQIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINFGL 763 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A +A G+ + A +N A ED F+ Sbjct: 764 IYGMSAF---GLAGNLGITREAAKLYIDRYFARYP------GVAKFMDNVRAQAKEDGFV 814 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T R LW Sbjct: 815 QTVFGR-------------RLW-------------------------------------- 823 Query: 560 LMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM---- 614 LP +S R G R+ +N Q S D++ M Sbjct: 824 --LPEIKSPNGPRRAGAERAAINAPM------------------QGTSADLIKMAMVELS 863 Query: 615 --MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTS 653 + A K +++ VHDE++ E P + E + +MT Sbjct: 864 AWLKAEKLNSKMIMQVHDEVIFEVPKGELELIQKRVPEIMTQ 905 >gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163] gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163] Length = 929 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 102/589 (17%), Positives = 192/589 (32%), Gaps = 90/589 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64 D G+ +I +F HD P L A LE+ Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPDQLDRATVLALLKPLLEDE 413 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + + N F++ V++ DI + +L + + A + K Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHK 470 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----RLEP- 177 +E+ + T + A G Y D VT + + +L+P Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQTLWGKLQPH 520 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + + L + I G +D A+ ++ + +L+ + L G Sbjct: 521 ADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAELEIQAYELA-GEEF 579 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ L+ + L + T T + VL+ P + R Sbjct: 580 NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLILEYR------- 632 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 633 ------------------------GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA +G +V AD + IE R++A ++G++ L AF Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDEGLLNAF 728 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T + F +A +VT +QR K + L Y A + LN+ Sbjct: 729 ANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 N E + +++ ++ EH + + + HSR + Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A K+ + + +++KD + +++ LV+ Sbjct: 839 GAERAAINAPMQGTAADIIKKAMIAIDDWLQKDAPKVKMIMQVHDELVF 887 >gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7] gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7] Length = 917 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 112/595 (18%), Positives = 191/595 (32%), Gaps = 87/595 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + D ET + ID A+ V+ +F + H + Sbjct: 338 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAV 387 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 + LK LE+ V ++ ++ VL + I + +L + + Sbjct: 388 LRALKPLLEDPQKLKVGQHAKYDINVLANA-STPIAMQGVAYDTMLESYVLDSTATRHDM 446 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169 ALK +++ + K T + + A G Y D VT Sbjct: 447 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 496 Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++++LE + E L + I G VD L ++ + + L++ Sbjct: 497 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 556 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + L G + ++L L+ + GL + T T + L A Q F Sbjct: 557 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 612 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +Q+ S+ P Q PR R H Sbjct: 613 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 649 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R IA +G KL+ AD + IE R++A +A + Sbjct: 650 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPQGYKLLAADYSQIELRIMAHLAKD 709 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF D++ T A F V V+ DQR K + L Y A +A Sbjct: 710 EGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 766 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + A E A E F+ T R + + HS Sbjct: 767 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 819 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + + + G A KR V + ++ + ++L LV Sbjct: 820 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLRESGLDARVILQVHDELV 874 >gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700] gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700] Length = 985 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 92/551 (16%), Positives = 182/551 (33%), Gaps = 76/551 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115 LK LEN ++ V N F+ T+ I + T++L+ + A Sbjct: 464 LKPILENPNIGKVGQNLKFDMTIFAR---NGIELRGIEFDTMLLSYTLDSTGRHNMDDLA 520 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---- 171 + + +++ + T + GEY D VT ++ Sbjct: 521 KRYLGHQTIGFEDIAGKGKNQLTFNQI----------PLEQAGEYAAEDADVTMKLQQVL 570 Query: 172 FKRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +++L+ S E L + + G +D + + T L+ + Sbjct: 571 WEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTALEMQAHE 630 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF + GL + +T + VL + +R Sbjct: 631 LA-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPKVLVEHR 689 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P P+ R H Sbjct: 690 -------------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYH 718 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +SDP+ I +R IA +G K++ AD + IE R++A ++ + Sbjct: 719 QAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 778 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF G+D++ +T A F + QVT +QR K + L Y + ++ Sbjct: 779 AGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIYGMSSF---GLSRQL 835 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + + E A ++ T R + + +S Sbjct: 836 GISRADAQRYMDLYFQRYP------GVQTFMHDIREKAKAQGYVETLFGR-RLYLPEINS 888 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + G A KR + L + +D ++ +++ LV+ Sbjct: 889 SNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEITRDDPDIHMIMQVHDELVFEVRSE 948 Query: 576 NRSYLNTTTRQ 586 ++ + +Q Sbjct: 949 KIAFFSDLIKQ 959 >gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] Length = 923 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 100/594 (16%), Positives = 182/594 (30%), Gaps = 89/594 (14%) Query: 33 FAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKA 82 +F ++ HD + + LK LE+ + + N ++ +V+ Sbjct: 365 VSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDPNQAKIGQNLKYDASVIAR 424 Query: 83 CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 I + +L N + AL+ K +E+ + T Sbjct: 425 Y---GIEMQGIKYDTMLESYVYNSVVGRHDMDSLALRYLEHKNISFEEIAGKGKGQLTFN 481 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLD 189 + G Y D +T + L P S E L + Sbjct: 482 QI----------DLEQAGPYAAEDADITLRLHNALYPKVSADEKLLHVFSDIEMPLVPVL 531 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G +D +Q + +L++ + + ++L+ LF + GL Sbjct: 532 SRMERTGVLIDSMKLSAQSQEIAQRLDELEKRAFEIAD-QEFNLSSPKQLQAILFEKMGL 590 Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + T +T + VL P + R Sbjct: 591 PVLKKTPSGTPSTNEEVLQELALDYPLPKLILEYR------------------------- 625 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 G ++ P P R H Q +T +SDP+ I Sbjct: 626 ------GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDE 679 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R IA +G K++ D + IE R++A ++G++ L AF G+D++ T A + Sbjct: 680 GRRIRQAFIAPQGYKVLAIDYSQIELRIMAHLSGDKALLDAFCHGKDIHAATAAEILGLP 739 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 QV+ +QR K + L Y A +A + + T +E Sbjct: 740 LDQVSSEQRRRAKAINFGLIYGMSAF---GLAKQLDMGRGEAQEYMNT-----YFERYPG 791 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--I 538 +M E A E ++ T R + SR +A G A I Sbjct: 792 VLEYM-ETTRTVASEQGYVETLFGR-RLYLPDIKSRNGLRRKAAERAAINAPMQGTAADI 849 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 I R V +++ + L++ LV+ + + + L Sbjct: 850 IKRAMVLVDEWIGQQESGRVRLLMQVHDELVFEVQESEIESVAQEIKTLMESAA 903 >gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 928 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P+ R H Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905 >gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] Length = 929 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 114/664 (17%), Positives = 195/664 (29%), Gaps = 157/664 (23%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEALENT 64 D GI A+ ++ +F H + + LK LE+ Sbjct: 347 DTETTGID--AQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRDSVLLALKPLLEDP 404 Query: 65 DVTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 + V ++ F+ +L C I + +L N + A K Sbjct: 405 KLLKVGQHAKFDMNILANCAIGGDQANGITVRGVAFDTMLESYVLNSTATRHDMDSLAQK 464 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175 +++ + K T + + G Y D VT + + L Sbjct: 465 YLDHSTVSFQDIAGKGAKQLTFDQI----------PLEQAGPYAAEDADVTLRLHQVLFD 514 Query: 176 ---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L+ E L + I +G VD L + + + L++E + Sbjct: 515 KLSAIPSLASVLTDIEMPLVPVLARIERQGALVDDKLLGVQSIELGDKMVALEREAFEIA 574 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G + ++L + L+ + GL + T + Sbjct: 575 -GEEFNLGSPKQLGSILYDKLGLPVLKKTAKGQPSTAEEVLAKLAEDDYPLP-------- 625 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 R +Q+ S+ P Q PR R H Q + Sbjct: 626 ------------------RVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAST 667 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I +R IA G KL+ AD + IE R++A ++ ++ L A Sbjct: 668 GRLSSSDPNLQNIPVRTAEGRRIRQAFIAPPGYKLLAADYSQIELRIMAHLSRDEGLLNA 727 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F D++ T A F V VT DQR K + L Y GA QK+ G++ Sbjct: 728 FRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINFGLIYGMGA---QKLGKDIGVDTKQ 784 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + +M + Sbjct: 785 AKAYIDT-----YFARYPGVREYMDRTRAQ------------------------------ 809 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 Q + +TI +R +P + K P R+ G R+ +N Sbjct: 810 -AADQGYVETI-------FGRRLYLPEINSNK---------PQERA------GAERTAIN 846 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE 635 Q + DI+ + M+ ++L VHDE+V E Sbjct: 847 APM------------------QGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLE 888 Query: 636 TPDT 639 + Sbjct: 889 VRED 892 >gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 928 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P+ R H Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905 >gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 929 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 102/589 (17%), Positives = 194/589 (32%), Gaps = 90/589 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D G+ +I +F HD P+ L K LE+ Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVLALFKPLLEDE 413 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + + N F++ V++ DI + +L + + A + S K Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHK 470 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----P- 177 +E+ + T + A G Y D VT + ++L P Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQKLWGKLQPH 520 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + + L + I G +D A+ ++ + + +L+ + L G Sbjct: 521 ADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTIRLAELETQAYELA-GEEF 579 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ L+ + L + T T + VL+ P + Sbjct: 580 NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLILE--------- 630 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + G ++ P P R H Q +T Sbjct: 631 ----------------------YRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA +G +V AD + IE R++A ++G++ L AF Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAF 728 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T + F +A +VT +QR K + L Y A + LN+ Sbjct: 729 ANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 N E + +++ ++ EH + + + HSR + Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A K+ + + +++KD + +++ LV+ Sbjct: 839 GAERAAINAPMQGTAADIIKKAMIAIDDWLQKDTPKVKMIMQVHDELVF 887 >gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 928 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905 >gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1] gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1] Length = 938 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 126/705 (17%), Positives = 218/705 (30%), Gaps = 178/705 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMP-QVL 57 + +D ET S L L P + + +P +P + + Sbjct: 358 IALDTETTSTDPLNGA------------LVGISLAVEPGTGYYLPVGHLTGEPQLPLESI 405 Query: 58 KEALE----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111 ++AL + V N ++ L+ + +LA P++ L Sbjct: 406 RDALAPFLGDPRKPKVGQNLKYDLLALRLA---GMEAQGLAFDTLLAEWLVDPASRALGL 462 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 A + +M +ELI R + Y D +T + Sbjct: 463 KEMAERYLGVQMTRIEELIG--------TGKNQRTMAQ--VSVAQVAPYAAADAEITLRL 512 Query: 172 FKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 LE E L + + G +DV + + ++++E Sbjct: 513 KPILEERMLKAGVTRLFQDVEMPLVPVLADMEWNGILLDVPFLQRMGVELSQRLAEIEKE 572 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-------RVLSSNKKLTPQAI 274 + +L G + ++L LF E L D + T VL + P Sbjct: 573 IYAL-VGHPFNINSTQQLSRVLFEELRLEPPDRRKKTSAGLYSTSAEVLEELRGRHPVLD 631 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR S+ P Q PR R Sbjct: 632 LILENREL-------------------------------SKLKSTYVDALPQQVNPRTGR 660 Query: 335 SHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q + +SDP+ I + VR+ IA EG L+ D + IE R++ Sbjct: 661 VHTRFNQTGSVTGRLASSDPNLQNIPTRTDLGRQVRNAFIADEGWVLLSVDYSQIELRIV 720 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A ++ L AF G+D++ T A + V VT++ R K + L Y A Sbjct: 721 AHVANDEAMLAAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMSAFGLS 780 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + A T +AENF + E Sbjct: 781 RSADLT-------------------LAEAENFVKAYFEQ--------------------- 800 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 V ++L + + + ++ R+R Y KN P+ +L Sbjct: 801 ----FPGVKRFLDDLRRRAARE-GYVETLLGRRR------YFPNLKN------PANPAL- 842 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YD 623 R +N +Q + DI+ M+ +A Sbjct: 843 --KAREEREAINAP------------------IQGTAADIIKLAMIRLPEALRAAGSRAR 882 Query: 624 IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 ++L VHDE+V E P + A ++ H+M + ++ +PL E Sbjct: 883 LLLQVHDELVLEVPREEMPGTAKLVQHVMET--AYPLQIPLTTEA 925 >gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 929 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 101/589 (17%), Positives = 192/589 (32%), Gaps = 90/589 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64 D G+ +I +F HD P+ L A LE+ Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAKVLALFKPLLEDE 413 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + + N F++ V++ DI + +L + + A + + K Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHK 470 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----P- 177 +E+ + T + A G Y D VT + ++L P Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQKLWGKLQPH 520 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + + L + I G +D A+ ++ + +L+ + L G Sbjct: 521 ADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAELETQAYELA-GEEF 579 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ L+ + L + T T + VL+ P + Sbjct: 580 NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLILE--------- 630 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + G ++ P P R H Q +T Sbjct: 631 ----------------------YRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA +G +V AD + IE R++A ++G++ L AF Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAF 728 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T + F A +VT +QR K + L Y A + LN+ Sbjct: 729 ANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 N E + +++ ++ EH + + + HSR + Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A K+ + + +++KD + +++ LV+ Sbjct: 839 GAERAAINAPMQGTAADIIKKAMIAIDDWLQKDAPQVKMIMQVHDELVF 887 >gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 928 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905 >gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11] Length = 932 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 112/697 (16%), Positives = 207/697 (29%), Gaps = 178/697 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59 D G+ + ++ + FA D P +L W LK Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQ-------LKP 410 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 LE+ V N F++++L I + +L + + A + Sbjct: 411 LLEDDKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K +E+ + T + A G Y D VT ++ L P Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517 Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E L + I G +D + ++ + + +L+++ L Sbjct: 518 KLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G ++ P P R H Q Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T + DP+ I +R IA EG +++ AD + IE R++A ++ ++ Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKG 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F ++ +VT +QR K + L Y A +A + Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + R Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + +Q E G GR L D+ + Sbjct: 799 PGVLEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 833 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630 N T R+ +Q + DI+ M+ +++ VHD Sbjct: 834 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHD 886 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E+V E ++ +A + LM + A +PLK + Sbjct: 887 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921 >gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDDKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +E+ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P+ R H Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + + ++ LM Sbjct: 885 VFEVHKGDLDAVSKRIHQLME 905 >gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 932 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 112/697 (16%), Positives = 207/697 (29%), Gaps = 178/697 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59 D G+ + ++ + FA D P +L W LK Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQ-------LKP 410 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 LE+ V N F++++L I + +L + + A + Sbjct: 411 LLEDDKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K +E+ + T + A G Y D VT ++ L P Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517 Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E L + I G +D + ++ + + +L+++ L Sbjct: 518 KLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G ++ P P R H Q Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T + DP+ I +R IA EG +++ AD + IE R++A ++ ++ Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKG 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F ++ +VT +QR K + L Y A +A + Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + R Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + +Q E G GR L D+ + Sbjct: 799 PGVLEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 833 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630 N T R+ +Q + DI+ M+ +++ VHD Sbjct: 834 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHD 886 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E+V E ++ +A + LM + A +PLK + Sbjct: 887 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921 >gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] Length = 932 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 102/640 (15%), Positives = 190/640 (29%), Gaps = 156/640 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N F++++L I + +L N + Sbjct: 408 LKPLLEDDKALKVGQNLKFDQSMLARY---GIELRGIAFDTMLESYVLNSVAGRHDMDSL 464 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + K +E+ + T + A G Y D VT ++ Sbjct: 465 AERYLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYASEDADVTLQLHLV 514 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + I G +D + ++ + + +L+++ Sbjct: 515 LWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAH 574 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 575 ELA-EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEY 633 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P R H Sbjct: 634 R-------------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSY 662 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R IA +G +++ AD + IE R++A ++ Sbjct: 663 HQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPQGYRIMAADYSQIELRIMAHLSQ 722 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + +VT +QR K + L Y A +A Sbjct: 723 DEGLLTAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIYGMSAF---GLARQ 779 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + Sbjct: 780 LNIPRGEAQ--------------------------------------------RYMDLYF 795 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + + + +Q + G GR L D+ Sbjct: 796 ERYPGVLEYMERTRKQAADQGYVTTLD-----------------------GRRLYLPDIH 832 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627 + N R+ +Q + DI+ M+ +++ Sbjct: 833 S----RNANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQ 883 Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 VHDE+V E ++ +A + LM + A +PLK + Sbjct: 884 VHDELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921 >gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] Length = 918 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 190/617 (30%), Gaps = 85/617 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEA---------LENT 64 D + Y E ++ +F + HD + P L EA LE+ Sbjct: 344 DTETTSLD-YME-ARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLTEAVVLGKLKPLLEDP 401 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N ++R VL N DI + +L N S A + + Sbjct: 402 TRLKVGQNLKYDRNVL---LNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLGVE 458 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----RLEPL 178 +++ + K T + Y D +T + + +LE + Sbjct: 459 TTSFEDIAGKGVKQLTFNQI----------ELEQAAPYAAEDADITLRLHQTLWGQLEAV 508 Query: 179 S-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + + G +D L H +Q +++ +L+++ L G Sbjct: 509 PGLCQVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELERQAHELA-GQEF 567 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L LF + GL + T + ++ M Sbjct: 568 NLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYELPRLLM---------- 617 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + ++ P P+ R H Q + + Sbjct: 618 -----------------EHRTLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAATGRLSS 660 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I +R I S G KLV AD + IE R++A ++G++ L AF G+ Sbjct: 661 SDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGK 720 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A F VA VT D R K + L Y A +A G+ + Sbjct: 721 DIHKATAAEVFGVALDAVTTDMRRSAKAINFGLIYGMSAF---GLAKQLGIGRAEAQKYM 777 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 E + + ++ + G SR + L + Sbjct: 778 D--LYFERYPGVLEYMERTRQQAEAQGYVETLFGRRL-----YLPDIKSRNAGLRKGAER 830 Query: 527 AFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNT 582 A G A II R +V + ++ +++ LV+ R+ Sbjct: 831 AAINAPMQGTAADIIKRAMINVDGWIRGIEDESIRMLMQVHDELVFEIREEKLEEYTAII 890 Query: 583 TTRQLTREYTYGGKLTE 599 + + L E Sbjct: 891 KEKMSAAAELHVPLLVE 907 >gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] Length = 915 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 120/652 (18%), Positives = 205/652 (31%), Gaps = 164/652 (25%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 + + L L + + + AH+ ++ VL+ P R ++A +AL Sbjct: 379 DEVREALSPLLADPNTVVYAHHGKYDALVLERA---GYPRPRIAFDTMIAAYLLGENALD 435 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169 A +M E LI RN+ + G+Y DV T Sbjct: 436 LKSLAFNRLGMEMTEITTLI-----------GRGRNQLTMDLTDVQAAGDYACADVEATY 484 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L+P E L + + G VDV L L++ + + +L+ Sbjct: 485 RLVEVLQPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELE 544 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQV 276 +E+ L + +L T LF E GL T+T Q VL + + P + Sbjct: 545 REIYGLAK-HEFNINSTRQLATVLFDELGLPAGRRTKTGYSVSQEVLENLRHAHPIVDCI 603 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R + P Q P R H Sbjct: 604 LEYRQLL-------------------------------KLKSTYVDALPEQVNPETGRIH 632 Query: 337 EELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS---------EGKKLVVADLA 382 +Q I ++DP+ I + VR IA E L+ AD + Sbjct: 633 TSFNQTIAATGRLSSTDPNLQNIPVRTELGRSVRRAFIADNRPGYRPFDEEAVLLSADYS 692 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G++ + AF G+D++ T A F V QVT D R + K + + Y Sbjct: 693 QIELRLMAHLSGDERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMYG 752 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A +A TG++ + Sbjct: 753 MQAY---GLARDTGMSRQDAQRFID----------------------------------- 774 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561 + + V L + Q ++ G + +RR P + D +N+ Sbjct: 775 ------RYMARLPGVRAF---LERTKRQALQQGYVTSMFGRRRYTPDI----DSSNVNRR 821 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-- 619 L + R +N Q + DI+ M+ Sbjct: 822 LAA-----------ERMAINMPL------------------QGSAADIMKIAMIRVHDEM 852 Query: 620 ----AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P ++ + L +M + +PL E Sbjct: 853 RRRGLRSRMLLQVHDELLFEVPRSELRTMADLAVDVMEKVVT--LNVPLVVE 902 >gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 928 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 104/621 (16%), Positives = 198/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + +A+ + E +P Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905 >gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 928 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 104/621 (16%), Positives = 198/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + +A+ + E +P Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905 >gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2] Length = 913 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 111/595 (18%), Positives = 190/595 (31%), Gaps = 87/595 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56 + D ET + ID A+ V+ +F + H + + Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 LK LE+ V ++ ++ VL + I + +L + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169 ALK +++ + K T + + A G Y D VT Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492 Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++++LE + E L + I G VD L ++ + + L++ Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + L G + ++L L+ + GL + T T + L A Q F Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +Q+ S+ P Q PR R H Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R +A +G KL+ AD + IE R++A +A + Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF D++ T A F V V+ DQR K + L Y A +A Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + A E A E F+ T R + + HS Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + + + G A KR V + ++ + ++L LV Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870 >gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1] gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1] Length = 913 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 111/595 (18%), Positives = 190/595 (31%), Gaps = 87/595 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56 + D ET + ID A+ V+ +F + H + + Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 LK LE+ V ++ ++ VL + I + +L + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169 ALK +++ + K T + + A G Y D VT Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492 Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++++LE + E L + I G VD L ++ + + L++ Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + L G + ++L L+ + GL + T T + L A Q F Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +Q+ S+ P Q PR R H Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R +A +G KL+ AD + IE R++A +A + Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF D++ T A F V V+ DQR K + L Y A +A Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + A E A E F+ T R + + HS Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + + + G A KR V + ++ + ++L LV Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870 >gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi] gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 928 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905 >gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187] gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187] Length = 910 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 97/538 (18%), Positives = 168/538 (31%), Gaps = 79/538 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V + F+R VL+ N I + +L N S Sbjct: 386 LKPLLEDPTRLKVGQHLKFDRNVLR---NHGIHLQGIAFDTMLESYVLNSTASRHNMDDL 442 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A K + + +++ + K T + Y D +T + + Sbjct: 443 AKKYLNYTTQTFEDVAGKGVKQLTFNQV----------ELEKAAFYAAEDADITLRLHQT 492 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P L E L + + G +D L +Q ++V +L+ + Sbjct: 493 LWPQVEKEPALKSLLLEMELPLAEVLSDMERTGALIDPFLLQNQSQQIEVRLAELESQAH 552 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L LF + L + T T + VL P + + Sbjct: 553 EIAGG-PFNLGSPKQLGEVLFEKLQLPVIKKTPKGAPSTAEEVLQELAYDYPLPKLLLEH 611 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P P R H Sbjct: 612 RSL-------------------------------SKLKSTYTDKLPLMIAPSTGRVHTSY 640 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I +R +A G K+V AD + IE R++A ++ Sbjct: 641 HQAVTATGRLSSSDPNLQNIPVRTEEGRRIRQAFVADHGYKIVAADYSQIELRIMAHLSE 700 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF G+D++ T A N+ P VT +QR K + L Y A +A Sbjct: 701 DDGLLQAFAHGQDIHRATAAEIMNITPEAVTSEQRRNAKAINFGLIYGMSAF---GLAKQ 757 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + E + + +E + + G Sbjct: 758 LGIPRGEAQRYMD--RYFERYPGVLTYMERTREQAEQAGYVETLFGRRL-----YLPDIK 810 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL--VYMKKDKNNLILMLPSGRSLVY 570 ++ L +A G A KR + L D + +++ LV+ Sbjct: 811 AKNMGLRKAAERAAINAPMQGTAADIIKRAMIKLADWIKTCDNGTIRMVMQVHDELVF 868 >gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355] Length = 928 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 119/692 (17%), Positives = 212/692 (30%), Gaps = 168/692 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64 DL G+ ++ +F HD + + LK LE+ Sbjct: 354 DLETDGLD--TLTANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVLAQLKPLLEDP 411 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 D + V N ++R VLK N DI + +L N + + + + K Sbjct: 412 DASKVGQNLKYDRGVLK---NYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHK 468 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 +E+ + T + A Y D VT ++ ++ P KE Sbjct: 469 TITFEEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHLKMWPELEKE 518 Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L + + G +D A+ ++ + +L+ + L G Sbjct: 519 AGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAELELKAHELA-GEPF 577 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF + G+ T +T + VL+ P + +R Sbjct: 578 NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEHR------- 630 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G S+ P P R H Q +T Sbjct: 631 ------------------------GLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 666 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++DP+ I +R +A +G ++V AD + IE R++A ++ ++ L AF Sbjct: 667 RLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAF 726 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ T + F V ++VT +QR K + L Y G AF GL+ Sbjct: 727 SQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIY--GMSAF-------GLSRQ-- 775 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + KK R + Sbjct: 776 ------------------------------------LNIGAGEAKKYMDLYFERYPGVLR 799 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + NG + GR L D+ ++ N Sbjct: 800 YMENTRQLAASNG-----------------------YVETLDGRRLWLPDIKSS----NA 832 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635 R+ +Q + DI+ M+ +++ VHDE+V E Sbjct: 833 IRRKAAERAA-----INAPMQGTAADIIKRAMIAVDDWLQKQTDDAVRMIMQVHDELVFE 887 Query: 636 T-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + + + + LM + A +PL E Sbjct: 888 IKAEAVDEASKQIRALMEGSM--ALDVPLLVE 917 >gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 114/682 (16%), Positives = 211/682 (30%), Gaps = 168/682 (24%) Query: 27 DVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFE 76 D ++ +F ++ HD + LK LE++++ V + ++ Sbjct: 366 DAELVGVSFCIEEGEAAYVPVAHDYPDAPTQLSREFVLDALKPILESSNIIKVGQHIKYD 425 Query: 77 RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + VL N DI ++ +L N AL K +++ + Sbjct: 426 KNVLA---NYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEDIAGKGA 482 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEPLSS-------KEQ 183 K T + A G Y D +T I+ +L+ + E Sbjct: 483 KQLTFNQI----------ALEEAGPYAAEDADITLRLHNTIWAKLKEIPELKNLLIDVEV 532 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G +D +Q + +L++E+ G + ++L+ L Sbjct: 533 PLACVLSRMEQEGVLIDSQRLSQQSQDLAARIAELEKEVHEEA-GEPFNLGSTKQLQHIL 591 Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 F + L + T T + VL P ++ Sbjct: 592 FEKMSLPIIKKTPKGAPSTSEDVLQELALEYPLPKKI----------------------- 628 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +++ G ++ P R R H Q IT ++DP+ I Sbjct: 629 --------MEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLSSTDPNLQNI 680 Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 VR + +G K V AD + IE R++A ++G++ L AF G+D++ T + Sbjct: 681 PIRNEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHGKDIHKATAS 740 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F V +VT +QR K + L Y A +A + N + Sbjct: 741 EVFGVPLDEVTTEQRRSAKAINFGLIYGMSAF---GLAKQLNIPRNEAQKYMD------L 791 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + ++ E A + + +T+ Sbjct: 792 YFERYPGVLEYMDSTRESAK------------------------------EKGYVETVFG 821 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTY 593 + L LP ++ R G R+ +N Sbjct: 822 RR-----------------------LYLPDIKASNGARRKGAERAAINAPM--------- 849 Query: 594 GGKLTENIVQAVSRDILAEGMMNAT----KAGYD---IVLTVHDEIVCETPDTDEFN-AS 645 Q + DI+ M+ K D +++ VHDE+V E + + Sbjct: 850 ---------QGTAADIIKMAMIKVDDWISKNAADDVTMMMQVHDELVFEIKEDKVDSYVK 900 Query: 646 MLYHLMTSNPSWAKGLPLKAEG 667 + LM S + +PL E Sbjct: 901 TINTLMESAAT--LNVPLVVEA 920 >gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 913 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 111/595 (18%), Positives = 190/595 (31%), Gaps = 87/595 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56 + D ET + ID A+ V+ +F + H + + Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 LK LE+ V ++ ++ VL + I + +L + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169 ALK +++ + K T + + A G Y D VT Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492 Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++++LE + E L + I G VD L ++ + + L++ Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + L G + ++L L+ + GL + T T + L A Q F Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +Q+ S+ P Q PR R H Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R +A +G KL+ AD + IE R++A +A + Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF D++ T A F V V+ DQR K + L Y A +A Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + A E A E F+ T R + + HS Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + + + G A KR V + ++ + ++L LV Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870 >gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043] gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043] Length = 929 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 102/589 (17%), Positives = 193/589 (32%), Gaps = 90/589 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64 D G+ +I +F HD P+ L A LE+ Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAQVLALFKPLLEDE 413 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + + N F++ V++ DI + +L + + A + K Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHK 470 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----RLEP- 177 +E+ + T + A G Y D VT + + +L+P Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQTLWGKLQPH 520 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + + L + I G +D A+ ++ + L+ + L G Sbjct: 521 ADLCQVFQAIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAGLETQAYELA-GEEF 579 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ L+ + L + T T + VL+ P + Sbjct: 580 NLASTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLILE--------- 630 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + G ++ P P R H Q +T Sbjct: 631 ----------------------YRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IAS+G +V AD + IE R++A ++G++ L AF Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIASKGYSIVAADYSQIELRIMAHLSGDKGLLNAF 728 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T + F +A +VT +QR K + L Y A + LN+ Sbjct: 729 ANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 N E + +++ ++ EH + + + HSR + Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A K+ + + +++KD + +++ LV+ Sbjct: 839 GAERAAINAPMQGTAADIIKKAMISIDDWLQKDTPLVKMIMQVHDELVF 887 >gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103] gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103] Length = 928 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 119/692 (17%), Positives = 212/692 (30%), Gaps = 168/692 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64 DL G+ ++ +F HD + + LK LE+ Sbjct: 354 DLETDGLD--TLTANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVLAQLKPLLEDP 411 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 D + V N ++R VLK N DI + +L N + + + + K Sbjct: 412 DASKVGQNLKYDRGVLK---NYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHK 468 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 +E+ + T + A Y D VT ++ ++ P KE Sbjct: 469 TITFEEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHLKMWPELEKE 518 Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L + + G +D A+ ++ + +L+ + L G Sbjct: 519 AGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAELELKAHELA-GEPF 577 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF + G+ T +T + VL+ P + +R Sbjct: 578 NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEHR------- 630 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G S+ P P R H Q +T Sbjct: 631 ------------------------GLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 666 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++DP+ I +R +A +G ++V AD + IE R++A ++ ++ L AF Sbjct: 667 RLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAF 726 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ T + F V ++VT +QR K + L Y G AF GL+ Sbjct: 727 SQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIY--GMSAF-------GLSRQ-- 775 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + KK R + Sbjct: 776 ------------------------------------LNIGAGEAKKYMDLYFERYPGVLR 799 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + NG + GR L D+ ++ N Sbjct: 800 YMENTRQLAASNG-----------------------YVETLDGRRLWLPDIKSS----NA 832 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635 R+ +Q + DI+ M+ +++ VHDE+V E Sbjct: 833 IRRKAAERAA-----INAPMQGTAADIIKRAMIALDDWLQKQTDDAVRMIMQVHDELVFE 887 Query: 636 T-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + + + + LM + A +PL E Sbjct: 888 IKAEAVDEASKQIRALMEGSM--ALDVPLLVE 917 >gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 929 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 103/589 (17%), Positives = 193/589 (32%), Gaps = 90/589 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D G+ +I +F HD P+ L K LE+ Sbjct: 356 DTETDGLD--TLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVLALFKPLLEDE 413 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + + N F++ V++ DI + +L + + A + S K Sbjct: 414 KLLKIGQNLKFDKGVMQRY---DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHK 470 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PL 178 +E+ + T + A G Y D VT + ++L P Sbjct: 471 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLHLHQKLWGKLQPH 520 Query: 179 SS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + + L + I G +D A+ ++ + + +L+ + L G Sbjct: 521 TDLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKRLTIRLAELETQAYELA-GEEF 579 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ L+ + L + T T + VL+ P + R Sbjct: 580 NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALGYPLPKLILEYR------- 632 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 633 ------------------------GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATG 668 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA +G +V AD + IE R++A ++G++ L AF Sbjct: 669 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYSIVAADYSQIELRIMAHLSGDKGLLNAF 728 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T + F A +VT +QR K + L Y A + LN+ Sbjct: 729 ANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQ-----LNIPRS 783 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 N E + +++ ++ EH + + + HSR + Sbjct: 784 ESQKYMNLYFERYPGVQDYMERTRQQAAEHGYV-----STLDGRRLYLPDIHSRNAMARK 838 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A K+ + + +++KD + +++ LV+ Sbjct: 839 GAERAAINAPMQGTAADIIKKAMIAIDDWLRKDTPKVKMIMQVHDELVF 887 >gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] Length = 1043 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 116/640 (18%), Positives = 202/640 (31%), Gaps = 148/640 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + LK LE+ + + N ++ VLK +++ TL+L+ Sbjct: 515 ERLKPLLEDPSILKIGQNVKYDWIVLKQH-GVEMRPLD--DTLLLSYVLDA--------- 562 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN---HREAWRLFGEYCKGDVTVTREI 171 L+ M+ E K + + R A EY D VT + Sbjct: 563 --GLTDHGMDVLSE-KHLGHKPIPFSAVAGSGRTFIGFARVAIDKATEYAAEDADVTLRL 619 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ L+P E + + + + RG +D L L+ + + + E Sbjct: 620 WRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLGRLSSDFAQDMARYEAE 679 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQV 276 + L G + ++L LF + GL T T T VL + A ++ Sbjct: 680 IYELA-GEKFNLGSPKQLGDILFGKLGLPGAKKTATGAWSTAAGVLEDLAEQGVDLAARI 738 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R A + P P R H Sbjct: 739 LDWRQLA-------------------------------KLKSTYTDALPNYINPSSGRVH 767 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 T +S+P+ I +R IA G+KLV AD + IE R+LA Sbjct: 768 TSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRRAFIAPPGRKLVSADYSQIELRLLAH 827 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A + AF D++ T + F V + + R K + + Y A + Sbjct: 828 IADIKSLKNAFAENLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAF---GL 884 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A+ + A +K Sbjct: 885 ANQLAIPREEAAAYIK-------------------------------------------- 900 Query: 512 QKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + R + + ++ ENG I ++ P + PS R+L Sbjct: 901 KYFERFPGIRAYMDDTKKKARENGYVETIFGRKCHYPRIKASN---------PSERAL-- 949 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 N R+ +N + G + I +A+ I E + A K ++L VHD Sbjct: 950 ----NERAAINAPIQ---------GSAADIIRRAM---IHMEAALAAEKLSAQMLLQVHD 993 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 E++ E PD + E +++ +M P A +PL+ + Sbjct: 994 ELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDA 1033 >gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568] gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568] Length = 934 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 110/640 (17%), Positives = 200/640 (31%), Gaps = 156/640 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N F+ ++L DI + +L + + Sbjct: 410 LKPLLEDEKALKVGQNLKFDMSLLARY---DITLRGIAFDTMLESYVLDSVGGRHDMDSL 466 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + K T + A Y D VT ++ Sbjct: 467 SDRYLGHKTVTFEEIAGKGKKQLTFNQI----------ALEQAAPYAAEDADVTLQLHLA 516 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E L + I G +D ++ T + + +L+ + Sbjct: 517 MWPQLKESAELLTVFNQIEMPLLPVLSHIERTGVLIDQSILATHSIELTKRLAELEIQAH 576 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 577 ELA-EEPFNLASTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPLPKVILEY 635 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P R H Sbjct: 636 R-------------------------------GLAKLKTTYTDKLPLMINPVSGRVHTSY 664 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I +R IA EG ++V AD + IE R++A ++ Sbjct: 665 HQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQ 724 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ LKAF GED++ T A F + +VT +QR K + L Y A +A Sbjct: 725 DEGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIYGMSAF---GLARQ 781 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A+ + E +P Sbjct: 782 LGIPRGE----------------AQRYMDLYFERYP------------------------ 801 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + +Q G GR L DV Sbjct: 802 ----GVLEYMERTRQQAASQGYVSTLD-----------------------GRRLYLPDV- 833 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLT 627 +++ + R+ +Q + DI+ M+ K +++ Sbjct: 834 -------SSSNGMRRKAAERA-AINAPMQGTAADIIKRAMIEVDAWLQAQEKPLVRMIMQ 885 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E ++ E + + LM ++ + A +PLK + Sbjct: 886 VHDELVFEVHESVLEESNQRIRELMENSMALA--VPLKVD 923 >gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586] gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586] Length = 938 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 99/561 (17%), Positives = 190/561 (33%), Gaps = 77/561 (13%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGE 114 LK LE+ V N ++ +V+ +++ R T++ + N + Sbjct: 413 QLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSL 470 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + T + + +Y D VT + +R Sbjct: 471 ALRFLQHSCISFEQIAGKGKNQLTFNQI----------DLQEAAQYAAEDADVTLRLHQR 520 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + PL + E L + I G ++ L +Q + + +L+++ Sbjct: 521 ISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMINDMLLSAQSQEIALRLDELEKKAY 580 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + L + T +T + VL P + Sbjct: 581 ELA-GQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEY 639 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P R H Sbjct: 640 R-------------------------------GLAKLKSTYTDKLPKMINPNTGRVHTSY 668 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R +A G K++ D + IE R++A ++G Sbjct: 669 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSG 728 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L AF G+D++ T A V QV+ +QR K + L Y A +A Sbjct: 729 DQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQ 785 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + +E ++M++ A E ++ T R + + Sbjct: 786 LGIPRGEAQEYMD-----KYFERYPGVMQYMEDTRSR-AAELGYVETIFGR-RLHLPEIT 838 Query: 515 SRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 SR +A G A II + V ++ + L++ LV+ Sbjct: 839 SRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEV 898 Query: 573 VGNNRSYLNTTTRQLTREYTY 593 ++ S + + +QL Sbjct: 899 EESSLSEIESKVQQLMESAAE 919 >gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1] gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1] Length = 928 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 117/692 (16%), Positives = 213/692 (30%), Gaps = 168/692 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64 DL + + + ++ +F HD P+ L A LE+ Sbjct: 354 DLETDALDTLSAN--IVGISFAIAPGEAAYLPVAHDYLDAPEQLDRAAVLAQLKPLLEDD 411 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N ++R VLK N DI + +L N + A + + K Sbjct: 412 SAWKVGQNLKYDRGVLK---NYDIELAGIKFDTMLESYILNSVVGKHDMDSLAARWLNHK 468 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 +E+ + T + A Y D VT ++ ++ P KE Sbjct: 469 TVTFQEIAGKGKNQLTFNQI----------ALEQASHYAAEDADVTLQLHLKMWPELEKE 518 Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L + I G +D A+ ++ + +L+ + L G Sbjct: 519 AGPRKVFEQIEMPLLTVISRIERNGVLIDQAILAQHSKELTARLAELELKAHELA-GEPF 577 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF + G+ T +T + VL+ P + +R Sbjct: 578 NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEHR------- 630 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G S+ P P R H Q +T Sbjct: 631 ------------------------GLSKLKSTYTDKLPLMINPLSGRVHTSYHQAVTATG 666 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++DP+ I +R +A++G ++V AD + IE R++A ++ ++ L AF Sbjct: 667 RLSSADPNLQNIPVRNDEGRRIRQAFVAAKGYRIVAADYSQIELRIMAHLSQDKGLLDAF 726 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ T + F V +V+ +QR K + L Y A ++ + Sbjct: 727 AQGEDIHRATASEVFGVPLDKVSAEQRRSAKAINFGLIYGMSAF---GLSRQLNIGAGE- 782 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A+ + E +P V + + Sbjct: 783 ---------------AKKYMDLYFERYP--------------GVLRYMENTRQLAAS--- 810 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + +TIE GR L D+ ++ N Sbjct: 811 ---KGYVETIE-------------------------------GRRLWLPDIKSS----NA 832 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635 R+ +Q + DI+ M+ +++ VHDE+V E Sbjct: 833 IRRKAAERAA-----INAPMQGTAADIIKRAMIAVDAWLEQQNDNSVRMIMQVHDELVFE 887 Query: 636 T-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + E + + LM + +PL E Sbjct: 888 VKAEAVEAASQKIRALMEGSVQ--LDVPLLVE 917 >gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 928 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 102/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P+ R H Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + + ++ LM Sbjct: 885 VFEVHKDDLDAVSKRIHQLME 905 >gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032] gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032] Length = 966 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 98/598 (16%), Positives = 197/598 (32%), Gaps = 98/598 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV---- 56 +D ET S +LT ++ +F + HD +P+ Sbjct: 392 VDTETDSLDNLTAN----------LVGISFATEPGLAAYIPVAHDYLDAPDQLPRDRVLE 441 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 LK LE+ + V N F+R +L+ N I + + +L + + Sbjct: 442 LLKPLLEDESLVKVGQNLKFDRGILQ---NYGIELRGIVFDTMLESYILDSVSGRHDMDS 498 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + +++ + T + G Y D VT ++ Sbjct: 499 LSSRWLKHTTITFEQIAGKGKNQLTFNQI----------DLEQAGRYAAEDADVTLQLHL 548 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 ++ P + E L + I G +D A+ H +Q + ++ +L+Q+ Sbjct: 549 KMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLAELEQKA 608 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 609 HEIA-GEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL- 666 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 Q+ G ++ P P+ R H Sbjct: 667 ------------------------------QYRGLAKLKSTYTDKLPQMINPKTGRVHTS 696 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 697 YHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 756 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF G+D++ T A F + V+ +QR K + L Y A ++ Sbjct: 757 RDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAF---GLSR 813 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + E + + ++ E + G Sbjct: 814 QLNIPRKESQKYMD--LYFERYPGVLEYMERTRKQAKEQGYVETLDGRRL-----YLPDI 866 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 ++ + +A G A KR + + +++K++ + +++ LV+ Sbjct: 867 NASNAARRAGAERAAINAPMQGTAADIIKRAMIAVDGWLEKEQPRVKMIMQVHDELVF 924 >gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688] gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688] Length = 918 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 123/698 (17%), Positives = 212/698 (30%), Gaps = 174/698 (24%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----QV 56 D ET S LT ++ +F HD +P Sbjct: 346 DTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAATLAR 395 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115 +K LEN + V N +++ VL N I ++ TL+ + A Sbjct: 396 IKPLLENPAIKKVGQNLKYDKHVLA---NHGIVLNGIAHDTLLQSYVLESHRTHGMDDLA 452 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 ++ + +++ + K + + A EY D VT ++ + L Sbjct: 453 MRHLGVQTITYEQVAGKGAKQVSFSQV----------ALEQASEYAAEDADVTLQLHENL 502 Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P ++ E + + TI G +D + + + + + L+Q+ Sbjct: 503 YPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALEQQAYE 562 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF + G+ T +T + VL P + Sbjct: 563 LA-GQPFNLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLPKVLLE-- 619 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + G ++ P P R H Sbjct: 620 -----------------------------YRGLAKLKSTYTDKLPRMINPTTGRVHTSYS 650 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R +A G +V AD + IE R++A ++ + Sbjct: 651 QAVAVTGRLSSSDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF GED++ T A F V V+ +QR KV+ L Y A +A Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAF---GLAQNL 767 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + ++ R +N E A + Sbjct: 768 GIERQAAQNYIERYFTRYP------GVRDYMQNTRERA------------------KAQG 803 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + +R VP + P+G R G Sbjct: 804 YVETFF-------------------GRRLWVPEINS-----------PNGM----RRAGA 829 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 R+ +N Q + D++ M+ K +++ VH Sbjct: 830 ERAAINAPM------------------QGTAADLIKLAMIAVQGWLESEKLATKLIMQVH 871 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+V E PD + L LM +PL AE Sbjct: 872 DELVLEVPDNELALVKEKLPQLMQDVAK--LDVPLLAE 907 >gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 928 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 196/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P+ R H Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D A ++ LM Sbjct: 885 VFEVHKDDLNAVAKRIHQLME 905 >gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34] gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34] Length = 923 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 99/612 (16%), Positives = 189/612 (30%), Gaps = 91/612 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D G+ Y V+ +F ++ HD + + LK LE+ Sbjct: 349 DTETDGLD-YM-TANVVGVSFAIEEGKAAYVPLAHDYLDAPAQLDRDWVLEQLKPLLEDP 406 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + N F+ +++ I + + +L N + AL+ K Sbjct: 407 KQAKIGQNLKFDASIVARY---GIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHK 463 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 +E+ + K T + G Y D +T + L P Sbjct: 464 NISFEEVAGKGKKQLTFNQI----------DLEQAGPYAAEDADITLRLHNTLYPKVEAD 513 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + E L + + G VD L + + V +++++ + Sbjct: 514 DKLKHVFENIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAVRLDEIEKKAFEIA-EQEF 572 Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF + GL + T +T + VL P + R Sbjct: 573 NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLLLEYR------- 625 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 626 ------------------------GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATG 661 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R +A G K++ D + IE R++A ++G++ L AF Sbjct: 662 RLSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAF 721 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T A ++ V+ +QR K + L Y A +A + N Sbjct: 722 RHGKDIHAATAAEILSLDIENVSSEQRRRAKAINFGLIYGMSAF---GLAKQLDMGRNEA 778 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + N E + + + E + G SR Sbjct: 779 QNYM--NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRL-----YLPDIKSRNGLRRK 831 Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +A G A II V ++ + ++ L++ LV+ + + Sbjct: 832 AAERAAINAPMQGTAADIIKLAMIAVDDWVQQQPEGDVRLLMQVHDELVFEVKESALEAV 891 Query: 581 NTTTRQLTREYT 592 + + L + Sbjct: 892 TASVKALMEQAA 903 >gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1] Length = 913 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 111/595 (18%), Positives = 189/595 (31%), Gaps = 87/595 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56 + D ET + ID A+ V+ +F + H + + Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 LK LE+ V ++ ++ VL + I + +L + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169 ALK +++ + K T + + A G Y D VT Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492 Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++++LE + E L + I G VD L ++ + + L++ Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + L G + ++L L+ + GL + T T + L A Q F Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +Q+ S+ P Q PR R H Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 645 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R +A +G KL+ AD + IE R++A +A + Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF D++ T A F V V+ DQR K + L Y A +A Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAF---GLAKQI 762 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + A E A E F+ T R + + HS Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + + + G A KR V + + + ++L LV Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLLESGLDARVILQVHDELV 870 >gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] Length = 596 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 155/686 (22%), Positives = 239/686 (34%), Gaps = 132/686 (19%) Query: 7 DFETRSPI--DLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET D+ G+ Y D L +F H P E Sbjct: 26 DTETYYSKGYDIRSLGVDAYVADPRFDCYLASFWGPHGNF----VGHPSECPWE-----E 76 Query: 63 NTDVTIVAHNSYFERTVLKAC--FNL---DIPIHRWICTLVLARSNGLPSALKAVGEALK 117 D ++HN+ F+R V + I W + LA P L E L Sbjct: 77 FNDCVWISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPRNLAGAAEKL- 135 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-KRLE 176 L + + ++ + H +A +Y D + E++ + Sbjct: 136 LGEKPNKAIRDAMK----------GIQGGLLCHDKA---VLDYALDDARLACELWISHCD 182 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 KE+ L L + G +D + + R D E +L + Sbjct: 183 KWPKKERLLSQLTIEQGEYGVHLDQKRIREGIETLTQVR---DDEATNLPWFPRLKPSSP 239 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRV---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 + + + + + T + + + P + R + + L T Sbjct: 240 KAFAE-ACQQARIPIPNSTSEDDPQTQEWIERYGERYPWLKHMSEWR--KANRMLKVLET 296 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGC-VFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + DG L L++ GA TGRW+G QN R + Sbjct: 297 MQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREAYYG---------------V 341 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 DP R C++A G KL++ADL+ IE RVLAW+AG++ G +Y Sbjct: 342 DP----------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAH 391 Query: 413 YARSFNVAPAQVTKDQRAI---GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 S N + K+ + K + LGY G K FQ +A GL ++ Sbjct: 392 AETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMSI-------- 443 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +R +R+ + R+ LW + + Sbjct: 444 -------------------------------GEAKRTVDDFRKANPRIVSLWQAVEDSMR 472 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 I + + LPS RS+ Y DV TT R R Sbjct: 473 YHI----------------------GSTFFMYLPSLRSIRYFDVQEEEGLTATTERGGRR 510 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 + YGGKLTEN+VQA +RD+ AEG++ KAG I+ TVHDE++CE P+ + + Sbjct: 511 LHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVETVTD 570 Query: 650 LMTSNPSWAKGLPLKAEGYESKRYRK 675 L+ P W GLP+ AEG E+ Y K Sbjct: 571 LLAQTPDWIPGLPVAAEGIETSCYTK 596 >gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] Length = 928 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 116/679 (17%), Positives = 218/679 (32%), Gaps = 161/679 (23%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLI-------------- 765 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A + ++A+ + E +P V + + Sbjct: 766 YGMSAFGLARQLNIPR-----KEAQKYMDLYFERYP--------------GVLEYMERTR 806 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ Q++ +T++ GR L D+ Sbjct: 807 AQAK------EQSYVETLD-------------------------------GRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I + + A + +++ VHDE+V Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDELVF 886 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D + A ++ LM Sbjct: 887 EVHRDDVDAVAKQIHQLME 905 >gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens] gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens] Length = 896 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 116/682 (17%), Positives = 212/682 (31%), Gaps = 156/682 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65 ID + ++ + ++ H Q++KE LEN Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKM 123 + + N ++ +VLK N I + +L A ALK K Sbjct: 383 IGKIGQNIKYDYSVLK---NYGITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKT 439 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181 +++ + K + + G Y D +T + +L P+ K Sbjct: 440 ISYEDVAGKGAKQLRFDQIPV----------EKAGIYAAEDADITLRLHHKLYPMLDKPL 489 Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G +D + + + L+QE L G + Sbjct: 490 RNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAIQLA-GKAFNLN 548 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++L+ LF E L + T T S + F+ R+ A Sbjct: 549 SPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA----------- 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 L++ S+ P + P+ R H +Q + +SDP Sbjct: 593 -----------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R+ IA EG ++ AD + IE R++A ++ + L+AF G D++ Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V+K+QR K + L Y A +A G+ Sbjct: 702 AATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER---------- 748 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +DA+++ +P ++ + + + Sbjct: 749 ------QDAQHYIDTYFRRYP----------------------------KVLEYMERTRK 774 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q + G RR L LP +R L R Sbjct: 775 QAHQLGYVETLFGRR---------------LYLP-----------------EINSRNLMR 802 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDE 641 + +Q + DI+ + M+ +++ VHDE+V E + E Sbjct: 803 QKAAERTAINGPMQGTAADIIKKTMLAVSNWEHSQKNPSAKMIMQVHDELVFEVRKEAVE 862 Query: 642 FNASMLYHLMTSNPSWAKGLPL 663 ++++ LM +PL Sbjct: 863 ECRAIIHKLMEQTVK--LSVPL 882 >gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4] gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4] Length = 918 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 124/698 (17%), Positives = 212/698 (30%), Gaps = 174/698 (24%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----QV 56 D ET S LT ++ +F HD +P Sbjct: 346 DTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAATLAR 395 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115 +K LEN + V N +++ VL N I ++ TL+ + A Sbjct: 396 IKPLLENPAIKKVGQNLKYDKHVLA---NHGIALNGIAHDTLLQSYVLESHRTHGMDDLA 452 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 ++ + +++ + K + + A EY D VT ++ + L Sbjct: 453 MRHLGVQTITYEQVAGKGAKQVSFSQV----------ALEQASEYAAEDADVTLQLHENL 502 Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P ++ E + + TI G +D + + + + + L+Q+ Sbjct: 503 YPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALEQQAYE 562 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF + G+ T +T + VL P + R Sbjct: 563 LA-GQPFNLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLPKVLLEYR 621 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G ++ P P R H Sbjct: 622 -------------------------------GLAKLKSTYTDKLPRMINPTTGRVHTSYS 650 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R +A G +V AD + IE R++A ++ + Sbjct: 651 QAVAVTGRLSSSDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF GED++ T A F V V+ +QR KV+ L Y A +A Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAF---GLAQNL 767 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + ++ R +N E A + Sbjct: 768 GIERQAAQNYIERYFTRYP------GVRDYMQNTRERA------------------KAQG 803 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V + +R VP + P+G R G Sbjct: 804 YVETFF-------------------GRRLWVPEINS-----------PNGM----RRAGA 829 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 R+ +N Q + D++ M+ K +++ VH Sbjct: 830 ERAAINAPM------------------QGTAADLIKLAMIAVQGWLESEKLATKLIMQVH 871 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+V E PD + L LM +PL AE Sbjct: 872 DELVLEVPDNELALVKEKLPQLMQDVAK--LDVPLLAE 907 >gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 930 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 103/613 (16%), Positives = 195/613 (31%), Gaps = 101/613 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S +++ ++ +F + HD +P+ Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLAL 406 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V V N ++R +L N DI + +L + + Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + T + A G Y D VT ++ + Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + V+ +QR K + L Y A +A Sbjct: 722 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573 S +A G A KR + + +++ +K + +++ LV+ Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVH 891 Query: 574 GNNRSYLNTTTRQ 586 + LN +++ Sbjct: 892 KDE---LNAVSKK 901 >gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] Length = 932 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 110/697 (15%), Positives = 204/697 (29%), Gaps = 178/697 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59 D G+ + ++ + FA D P +L W LK Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAT-------LKP 410 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 LE+ V N F++++L I + +L N + A + Sbjct: 411 LLEDEKALKVGQNLKFDQSMLARY---GIELRGIAFDTMLESYVLNSVAGRHDMDSLAER 467 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K +E+ + T + A G Y D VT ++ L P Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEEAGPYASEDADVTLQLHLVLWP 517 Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D + ++ + + +L+++ L Sbjct: 518 KLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G ++ P P R H Q Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T + DP+ I +R IA +G +++ AD + IE R++A ++ ++ Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDEG 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F + +VT +QR K + L Y A +A + Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLNI 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + R Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + +Q + G GR L D+ + Sbjct: 799 PGVLEYMERTRKQAADQGYVTTLD-----------------------GRRLYLPDIHS-- 833 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630 N R+ +Q + DI+ M+ +++ VHD Sbjct: 834 --RNANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQESEPLVRVIMQVHD 886 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E+V E ++ +A + LM + A +PLK + Sbjct: 887 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921 >gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038] Length = 750 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 110/694 (15%), Positives = 200/694 (28%), Gaps = 172/694 (24%) Query: 15 DLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD--PVMPQ--------VLKEALE 62 D G+ + + L F HD PQ LK LE Sbjct: 176 DTETDGL----DTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLE 231 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSS 120 + V N F++++L I + +L + + A + + Sbjct: 232 DDKALKVGQNLKFDKSMLARY---GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLN 288 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 K +E+ + T + A G Y D VT ++ L P Sbjct: 289 HKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQ 338 Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G +D + ++ + + +L+++ L Sbjct: 339 QSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EE 397 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ L+ + L + T +T + VL+ P + Sbjct: 398 PFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILE------- 450 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + G ++ P P R H Q +T Sbjct: 451 ------------------------YRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTA 486 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + DP+ I +R IA +G ++ AD + IE R++A ++ + L Sbjct: 487 TGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLA 546 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F +VT +QR K + L Y A +A G+ Sbjct: 547 AFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAF---GLARQLGIPRG 603 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + R + Sbjct: 604 EAQ--------------------------------------------RYMDLYFERYPGV 619 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +Q E G GR L D+ + Sbjct: 620 LEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS----R 652 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ + +++ VHDE+V Sbjct: 653 NANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELV 707 Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E ++ +A + LM + A +PLK + Sbjct: 708 FEVHESVLQSAEQKIRELMEQSMQLA--VPLKVD 739 >gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 928 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P+ R H Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKSGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 775 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 828 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 885 VFEVHKDDLDAVAKRIHQLME 905 >gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] Length = 931 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD + + LK LE+ V N ++ +VL Sbjct: 374 SFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY 433 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ +++ + T Sbjct: 434 ---GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 490 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190 + Y D VT + RL E L E L + Sbjct: 491 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLS 540 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D + + +L+Q+ + + ++L+ LF + GL Sbjct: 541 RIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 599 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + R Sbjct: 600 VVKKTPSGTPSTNEEVLQELALDYPLPKLILEYR-------------------------- 633 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 G ++ P P R H Q +T ++DP+ I Sbjct: 634 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 689 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + + +E Sbjct: 749 DQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 800 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++M E+ A + ++ T R + + SR +A G A Sbjct: 801 MQYM-EDTRSAAADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 858 Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K+ + + +++ N + L LV+ ++ S + + ++L Sbjct: 859 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 912 >gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 957 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 109/634 (17%), Positives = 204/634 (32%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LE+ DV + N ++ T+ N + + +L + + Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTI---FANHGVQVEGVAFDTMLESYTLNSTGRHNMDEL 490 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDIASQYAAEDADVTMKLHQV 540 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P K E L + I G +D + ++ +L+Q + Sbjct: 541 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P P+ R H Q + Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINPKTGRVHTSYHQAV 693 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA++G K+V AD + IE R++A +A ++ Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLANDEGM 753 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ + Q++ V Sbjct: 811 RADAKKYME-----------------------------------------RYFQRYPAVQ 829 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ K+ V ++ GR L ++ ++ Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ KA +++ VHDE+V Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914 Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946 >gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] Length = 896 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 116/682 (17%), Positives = 212/682 (31%), Gaps = 156/682 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65 ID + ++ + ++ H Q++KE LEN Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKM 123 + + N ++ +VLK N I + +L A ALK K Sbjct: 383 IGKIGQNIKYDYSVLK---NYGITLQGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKT 439 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181 +++ + K + + G Y D +T + +L P+ K Sbjct: 440 ISYEDVAGKGAKQLRFDQIPV----------EKAGIYAAEDADITLRLHHKLYPMLDKPL 489 Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G +D + + + L+QE L G + Sbjct: 490 RNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA-GKAFNLN 548 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++L+ LF E L + T T S + F+ R+ A Sbjct: 549 SPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA----------- 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 L++ S+ P + P+ R H +Q + +SDP Sbjct: 593 -----------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R+ IA EG ++ AD + IE R++A ++ + L+AF G D++ Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V+K+QR K + L Y A +A G+ Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER---------- 748 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +DA+++ +P ++ + + + Sbjct: 749 ------QDAQHYIDTYFRRYP----------------------------KVLEYMERTRK 774 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q + G RR L LP +R L R Sbjct: 775 QAHQLGYVETLFGRR---------------LYLP-----------------EINSRNLMR 802 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDE 641 + +Q + DI+ + M+ +++ VHDE+V E + E Sbjct: 803 QKAAERTAINGPMQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVE 862 Query: 642 FNASMLYHLMTSNPSWAKGLPL 663 ++++ LM +PL Sbjct: 863 ECHAIIHKLMEQTVK--LSVPL 882 >gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380] gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380] Length = 932 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 102/642 (15%), Positives = 192/642 (29%), Gaps = 156/642 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 LK LE+ V N F++++L I + +L + + Sbjct: 406 DTLKPLLEDEKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMD 462 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A + + K +E+ + T + A G Y D VT ++ Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLH 512 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L P + E L + I G +D + ++ + + +L+++ Sbjct: 513 LVLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTGVLIDQNILAAHSKELAIRLDELEKQ 572 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L G + ++L+ L+ + L + T +T + VL+ P Sbjct: 573 AHELA-GEPFNLASPKQLQVILYEKQQLPILKKTPGGAASTNEEVLAELALDYPLPK--- 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +++ G ++ P P R H Sbjct: 629 ----------------------------VIIEYRGLAKLKSTYTDKLPLMINPVSGRVHT 660 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T + DP+ I +R IA +G +++ AD + IE R++A + Sbjct: 661 SYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHL 720 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 721 SQDKGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIYGMSAF---GLA 777 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + Sbjct: 778 RQLNIPRGEAQ--------------------------------------------RYMDL 793 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 R + + + +Q + G GR L D Sbjct: 794 YFERYPGVLEYMERTRKQAADQGYVTTLD-----------------------GRRLYLPD 830 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIV 625 + + N R+ +Q + DI+ M+ ++ Sbjct: 831 INS----RNANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQESAPLVRVI 881 Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E +T +A + LM + A +PLK + Sbjct: 882 MQVHDELVFEVHETVLESAEQKIRELMEQSMQLA--VPLKVD 921 >gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 930 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 101/597 (16%), Positives = 189/597 (31%), Gaps = 98/597 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S +++ ++ +F + HD +P+ Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLTL 406 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V V N ++R +L N DI + +L + + Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + T + A G Y D VT ++ + Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + V+ +QR K + L Y A +A Sbjct: 722 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 S +A G A KR + + +++ +K + +++ LV+ Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVF 888 >gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 884 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 359 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 415 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 416 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 465 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 466 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 525 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 526 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 584 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 585 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 613 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 614 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 673 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 674 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 730 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 731 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 752 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 753 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 783 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 784 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 840 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 841 VFEVHKDDLDAVAKRIHQLME 861 >gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 932 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 112/697 (16%), Positives = 207/697 (29%), Gaps = 178/697 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59 D G+ + ++ + FA D P +L W LK Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQ-------LKP 410 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 LE+ V N F++++L I + +L + + A + Sbjct: 411 LLEDDKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K +E+ + T + A G Y D VT ++ L P Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517 Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E L + I G +D + ++ + + +L+++ L Sbjct: 518 KLQQSEGLKRVFQEIEIPLLPILSRIERTGVLIDQNILVAHSKELTIRLDELEKQAHELA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G ++ P P R H Q Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T + DP+ I +R IA EG +++ AD + IE R++A ++ ++ Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKG 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F ++ +VT +QR K + L Y A +A + Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + R Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + +Q E G GR L D+ + Sbjct: 799 PGVLEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 833 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630 N T R+ +Q + DI+ M+ +++ VHD Sbjct: 834 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHD 886 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E+V E ++ +A + LM + A +PLK + Sbjct: 887 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 921 >gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 985 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 124/713 (17%), Positives = 231/713 (32%), Gaps = 169/713 (23%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMPQVL 57 + + ID ET S AE V + F +G + + + Q + Sbjct: 384 LQPVAIDTETTSLNPFK-------AELVG-LGFCWGENLDDIAYIPLGHNSQGELKDQSI 435 Query: 58 KEALENTDVT-------------IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 ++ L +V V N+ ++R + + IP+ + +LA Sbjct: 436 RQQLPIQNVIQSLTPWLSSSYHPKVLQNAKYDRLI---FLHNGIPLEGVVMDTLLADYLS 492 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + ++E + + L + + YC D Sbjct: 493 N-----------STNKHSLDEIAKR-EYGFTPINFKELVGKGETFKDVDIDTASIYCGMD 540 Query: 165 VTVTREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 V +TR++ R+ L EQ L + + RG C+D+ L++ ++ Sbjct: 541 VYLTRKLSFRIRSQLQTKGSELIQLLEKVEQPLEPILAEMEARGICIDIPYLKELSKELN 600 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNK 267 L+++ + G + ++L LF + L + +T T VL + Sbjct: 601 QTLKGLEEQAYK-SAGFEFNLNSPKQLGEILFDKLALDKKKSRKTKTGWSTDANVLERLE 659 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P + +R S+ P Sbjct: 660 ADHPLVPLLVEHR-------------------------------TLSKLVSTYVDALPQL 688 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 R H + +Q +T +S+P+ I S +R + E KL+ AD + Sbjct: 689 VEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLISADYS 748 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA ++GE+ +A++ G+D++ T + + ++R +GK + + Y Sbjct: 749 QIELRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKTINFGVIYG 806 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GA Q+ A +TGLN + + N E + +F E A+ ++ T Sbjct: 807 MGA---QRFARSTGLNQSEAKDFL--NRFKERYPKVFSFL----ELQERLALSKGYVQTL 857 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R + Y DKN L +L Sbjct: 858 LGRRR------------------------------------------YFNFDKNGLGRLL 875 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGM----- 614 S +N ++ R +L +Q S DI+ M Sbjct: 876 GSDP-------------MNIDLKRARRAGMEAQQLRAAANAPIQGSSADIIKIAMVQLAT 922 Query: 615 -MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + + +++L VHDE+V E P E +++ M + A L + A Sbjct: 923 KLKVSGVAANLLLQVHDELVLEVEPSVIEEVKNIVVSTMENAVHLAVPLVVHA 975 >gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 957 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 110/634 (17%), Positives = 204/634 (32%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN DV + N ++ T+ N + + +L + + Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDIASQYAAEDADVTMKLHQV 540 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P K E L + I G +D + ++ +L+Q + Sbjct: 541 LSPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P P+ R H Q + Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINPKTGRVHTSYHQAV 693 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA++G K+V AD + IE R++A +A ++ Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLANDEGM 753 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ + Q++ V Sbjct: 811 RADAKKYME-----------------------------------------RYFQRYPAVQ 829 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ K+ V ++ GR L ++ ++ Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ KA +++ VHDE+V Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 915 FEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIAE 946 >gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18] gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18] Length = 892 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 124/700 (17%), Positives = 210/700 (30%), Gaps = 175/700 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMPQ----- 55 ID ET S L D ++ +A H +P+ Sbjct: 318 IDLETTSLNPL----------DASIVGYAVSCLAHEAYYIPIGHRYLGAPEQLPEALVLE 367 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 +L L + D + N ++ VL+ + + C +LA PS + Sbjct: 368 LLGPLLTDPDRKKIGQNLKYDYQVLQQS---GVELAGIWCDTMLAAYLVNPSRNSQGLDA 424 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ +M E+ G Y D T + + Sbjct: 425 LALEYLDHRMISYAEVA----------GTGKCELNFSEVDLDRAGPYSCEDADATYLLHE 474 Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P L E L + + G +DV L L+ + +L+ ++ Sbjct: 475 ILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELSTGFGRQLIELEAKIH 534 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFN 278 G + ++L LF GL + T+ +T L + A Sbjct: 535 EHCGGS-FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVA----- 588 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R LQ+ S+ P P+ R H Sbjct: 589 --------------------------RLLLQYRSISKLKSTYTDALPRLVDPKTGRVHTS 622 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q IT+ +SDP+ I +R IA G ++ AD + IE RVLA ++ Sbjct: 623 YNQAITNTGRLSSSDPNLQNIPVRGEEGRGIRRAFIAEPGSLILSADYSQIELRVLAHLS 682 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ +AF GED++ T A F + P VT + R KV+ + Y GA + A Sbjct: 683 GDRVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQAKVINFGVIYGQGAFSL---AK 739 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + + + ++ Sbjct: 740 ELGVAPKQAKAFI-----------------------------------------ENYFER 758 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 HS + E I +R +P + K +G + + Sbjct: 759 HSGARSFLDRCIAEAETC--GFVTTILGRRLQIPEIASK-----------NGNARAFAQ- 804 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ N +Q + DI+ M+ K +++ Sbjct: 805 ---RNATNYP------------------IQGSAADIIKAAMIRVTRRMLEEKVASRLIMQ 843 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P + E ++ M +PLK + Sbjct: 844 VHDELVFEVPRNERELMEDLVRAEMEGALP--LSVPLKVD 881 >gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48] gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Pseudomonas entomophila L48] Length = 922 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 101/559 (18%), Positives = 174/559 (31%), Gaps = 76/559 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D G+ A+ ++ +F + + HD P L K LE+ Sbjct: 346 DTETTGLD--AQQASIVGLSFAVEPNEAAYVPLAHDYEGAPAQLDREAVLLALKPLLEDP 403 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123 + N+ ++ +L + T++ + + A K Sbjct: 404 AKGKIGQNAKYDINILANGSPAILMRGVAYDTMLESYVLDSTATRHDMDSLAQKYLDHTT 463 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------- 176 +++ + K T + G Y D VT + L+ Sbjct: 464 IGFEDIAGKGAKQLTFNQI----------PLEKAGPYAAEDADVTLRLHHALQARLANTP 513 Query: 177 ---PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 P+ E L + I +G VD AL + + + +L++E +L G + Sbjct: 514 SVLPVLMDIEMPLVPVLAKIERQGALVDAALLGVQSGELGAKLVELEREAYALA-GEEFN 572 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T + + + Sbjct: 573 LGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDDLAEQGYPLPKVL----------- 621 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 +Q+ S+ P Q PR R H Q + +S Sbjct: 622 ---------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSS 666 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 DP+ I +R +AS G KL+ AD + IE R++A +A ++ L AF D Sbjct: 667 DPNLQNIPVRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLD 726 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A F VA A VT DQR K + L Y A +A G++ + Sbjct: 727 VHRATAAEVFGVALADVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYID 783 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A E A E F+ T R + +++ L + Sbjct: 784 RYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAERT 836 Query: 528 FEQTIENGKAIIARKRRDV 546 G A KR V Sbjct: 837 AINAPMQGTAADIIKRAMV 855 >gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] Length = 930 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 112/640 (17%), Positives = 202/640 (31%), Gaps = 157/640 (24%) Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAVG 113 K LEN + + N ++ VL N DI + +L Sbjct: 406 KPILENDKILKIGQNLKYDAEVL---LNYDIELKGIAFDTMLESYVLNSVAGMGRHDMDS 462 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + + K +E+ + K T + A Y D VT + + Sbjct: 463 LAERHLNHKTVSFEEIAGKGKKQLTFNQI----------ALEQAANYAAEDADVTLLLHQ 512 Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E +L ++ + +G +D A+ ++ + +L++E Sbjct: 513 ALYPQLEAEPKLNHVFREIEMPLVPVLVRMERKGVLIDAAVLAAQSKEITARLAELEKEA 572 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278 L G + ++L+T LF + L + +T + VL + Sbjct: 573 FELA-GEEFNLASTKQLQTILFEKLQLPVVKKTPSGAPSTNEEVLEELALNHALPKLLLE 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R A + P + R H Sbjct: 632 HRSLA-------------------------------KLKSTYTDKLPLMISTKTQRVHTS 660 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T + DP+ I +R IA +G K+V AD + IE R++A ++ Sbjct: 661 YHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLS 720 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF G+D++ T A F V +VT DQR K + L Y A +A Sbjct: 721 QDKGLLTAFAEGKDIHRATAAEVFGVPLDEVTSDQRRSAKAINFGLIYGMSAF---GLAR 777 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ A+ + E +P ++ + Sbjct: 778 QLGIPRGE----------------AQRYMDLYFERYP-------------GVLRYMENTR 808 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 H Q + +T+E GR L D+ Sbjct: 809 HQA-------AEQGYVETLE-------------------------------GRRLYLADI 830 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 ++ N R+ +Q + DI+ + M+ K D+++ Sbjct: 831 KSS----NGMRRKAAEREA-----INAPMQGTAADIIKKAMIAVDAWLQTEKPHADMLMQ 881 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E +++ + + + LM + +PLK + Sbjct: 882 VHDELVFEVKESELDSVTTKIRELMEQSMQ--LDVPLKVD 919 >gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 957 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 110/634 (17%), Positives = 205/634 (32%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN DV + N ++ T+ N + + +L + + Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASQYAAEDADVTMKLHQV 540 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P K E L + I G +D + ++ ++L+Q + Sbjct: 541 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLSELEQLVH 600 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P P+ R H Q + Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINPKTGRVHTSYHQAV 693 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA++G K+V AD + IE R++A +A ++ Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLANDEGM 753 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ + Q++ V Sbjct: 811 RADAKKYME-----------------------------------------RYFQRYPAVQ 829 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ K+ V ++ GR L ++ ++ Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ KA +++ VHDE+V Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914 Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946 >gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 927 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 101/597 (16%), Positives = 189/597 (31%), Gaps = 98/597 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S +++ ++ +F + HD +P+ Sbjct: 354 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLAL 403 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V V N ++R +L N DI + +L + + Sbjct: 404 LKPLLEDEKVLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 460 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + T + A G Y D VT ++ + Sbjct: 461 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 510 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E L + + G +D A+ H +Q + +L+Q Sbjct: 511 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 570 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 571 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 629 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 630 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 658 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 659 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 718 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + V+ +QR K + L Y A +A Sbjct: 719 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 775 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 776 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 828 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 S +A G A KR + + +++ +K + +++ LV+ Sbjct: 829 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVF 885 >gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 957 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 110/634 (17%), Positives = 204/634 (32%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN DV + N ++ T+ N + + +L + + Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASQYAAEDADVTMKLHQV 540 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P K E L + I G +D + ++ +L+Q + Sbjct: 541 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P P+ R H Q + Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINPKTGRVHTSYHQAV 693 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA++G K+V AD + IE R++A +A ++ Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLANDEGM 753 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ + Q++ V Sbjct: 811 RADAKKYME-----------------------------------------RYFQRYPAVQ 829 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ K+ V ++ GR L ++ ++ Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ KA +++ VHDE+V Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914 Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946 >gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] Length = 930 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 101/597 (16%), Positives = 189/597 (31%), Gaps = 98/597 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S +++ ++ +F + HD +P+ Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLTL 406 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V V N ++R +L N DI + +L + + Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + T + A G Y D VT ++ + Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + V+ +QR K + L Y A +A Sbjct: 722 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 S +A G A KR + + +++ +K + +++ LV+ Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVF 888 >gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116] gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116] Length = 930 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 100/561 (17%), Positives = 176/561 (31%), Gaps = 87/561 (15%) Query: 34 AFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD PQ L K LE+ V N ++ +VL Sbjct: 373 SFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY 432 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ +++ + T Sbjct: 433 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 489 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190 + Y D VT + RL E L E L + Sbjct: 490 I----------DLDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLS 539 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D + + +L+Q+ + + ++L+ LF + GL Sbjct: 540 RIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIA-EQEFNMNSPKQLQALLFEKMGLP 598 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + Sbjct: 599 VINKTPSGTPSTNEEVLQELALDYPLPKLILE---------------------------- 630 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 + G ++ P P R H Q +T ++DP+ I Sbjct: 631 ---YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 687 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 688 RRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 V+ +QR K + L Y A +A G+ + + +E Sbjct: 748 EDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 799 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++M E+ A E F+ T R + + SR +A G A Sbjct: 800 MQYM-EDTRSAASEQGFVETIFGR-RLHLPEIQSRNGMRRKAAERAAINAPMQGTAADII 857 Query: 542 KRRDVPLVYMKKDKNNLILML 562 K+ + + +++ N + L Sbjct: 858 KKAMLLVDQWIQEEGNGRVKL 878 >gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345] gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345] Length = 918 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 117/688 (17%), Positives = 208/688 (30%), Gaps = 168/688 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEAL- 61 + ID ET S Y E ++ +F + HD V P+ L AL Sbjct: 341 IAIDTETTSLN---------YME-AKLVGISFAVEAGKAAYLPLEHDYVDAPEQLDRALV 390 Query: 62 --------ENTDVTIVAHNSYFERTVLK------ACFNLDIPIHRWICTLVLARSNGLPS 107 E+ ++ V N ++ ++ D + ++ V ++ N Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFANIGITLRGVQFDTMLESYVFNSVASKHNMDDL 450 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 ALK +G K +E+ + K T + Y D + Sbjct: 451 ALKYLG-------HKNISFEEIAGKGVKQLTFNQI----------PLETAAPYAAEDADI 493 Query: 168 TREI----FKRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T + + RLE L E L I +G +D L ++ + + Sbjct: 494 TLRLHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLIDSMLLGQQSEELARKID 553 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272 +L+ + + G + ++L+ F + G + T T + VL P Sbjct: 554 ELEHKAHEIA-GEPFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 612 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R A + P + Sbjct: 613 PKIILEHRSLA-------------------------------KLKSTYTDKLPLMVNAKT 641 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +S+P+ I +R IA EGKK++ AD + IE R Sbjct: 642 GRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELR 701 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++ + L AF G+D++ T A F+V ++VT DQR K + L Y A Sbjct: 702 IMAHLSQDTGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAF- 760 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 +A + + T ++ ++M+E A + ++ T R + Sbjct: 761 --GLAKQLDIPRAEAQSYIDT-----YFKRYPGVLKYMEETRA-IAADLGYVSTLFGR-R 811 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 R + +A G A K+ + Sbjct: 812 LYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI--------------------- 850 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627 Q T G E I +++ Sbjct: 851 ---------------NIAQWIETETQG----EII----------------------MIMQ 869 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSN 654 VHDE+V E + + + + LM + Sbjct: 870 VHDELVFEVDEAKADSLQAKVCELMAAA 897 >gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1] gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1] Length = 920 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 113/692 (16%), Positives = 195/692 (28%), Gaps = 165/692 (23%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEALE 62 +D + Y D ++ +F H +P LK LE Sbjct: 345 SVDTETTSLN-YM-DAELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLDYVLNALKPILE 402 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSS 120 + N ++ VL I + +L +A ALK Sbjct: 403 AETPAKIGQNLKYDMNVLARY---GITLSGVRFDTMLESYVLDAAATRHDMDSLALKYLG 459 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 QK +++ + K T + + Y D VT ++ + L P Sbjct: 460 QKTIAFEDVAGKGAKQITFDQV----------PLLQAATYAAEDADVTLKLHQALWPRVQ 509 Query: 181 K-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 K E L + + G +DVA ++ + +L+ E +L G Sbjct: 510 KTPTLTKVFQEIEMPLVGVLSRMEREGARIDVAALKQQSRQLGERMAELEAEAHTLA-GQ 568 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L L+ + L + T T + VL + Sbjct: 569 PFNLASPKQLGEILYDQLQLPILKKTPKGAPSTDESVLQDLAHDYELPKVLLE------- 621 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + G ++ P PR R H Q + Sbjct: 622 ------------------------YRGCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVAS 657 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R IA G +V AD + IE R++A ++ ++ + Sbjct: 658 TGRLSSSDPNLQNIPIRNESGRKIRQAFIAEPGFTMVAADYSQIELRIMAHLSDDESLID 717 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A V VT D R K + L Y A +A G++ Sbjct: 718 AFARGLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSAF---GLARQLGISRE 774 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + R + Sbjct: 775 QAQAY--------------------------------------------MDRYFHRYPGV 790 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +Q + G RR L LP R+ Sbjct: 791 LRYMEDIRKQAHDQGYVETLFGRR---------------LYLPEVRAAS----------- 824 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVC 634 ++ R+ +Q + DI+ M++ A +++ VHDE+V Sbjct: 825 -----KMRRQAAER-VAINAPMQGSAADIIKRAMIDIDTWLRTQPAKIRMIMQVHDELVF 878 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 E P D + M+ S L ++A Sbjct: 879 EVPNDVVPDAIEQIQKRMSGAASLKVPLIVEA 910 >gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 917 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 107/558 (19%), Positives = 184/558 (32%), Gaps = 75/558 (13%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 F + PV+L + V+ LK LE+ V N ++R VL N I + Sbjct: 373 FGHDYLGAPVQL----TEAVVLGKLKPLLEDPARLKVGQNLKYDRNVL---LNHGIELQG 425 Query: 93 WICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 +L N S A + + + +E+ + K T + Sbjct: 426 IAYDTMLESYVLNSTASRHDMDSLARRYLNAETISFEEIAGKGVKQLTFNQI-------- 477 Query: 151 REAWRLFGEYCKGDVTVTREIFKRL------EP-----LSSKEQELWYLDQTINDRGYCV 199 Y D +T + + L EP S E L + + G + Sbjct: 478 --ELEQAAPYAAEDADITLRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARMERLGTTI 535 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 + L H +Q ++V +L+++ L G + ++L LF + GL + T Sbjct: 536 EPKLLHQQSQEIEVRLAELEKQAHELA-GQEFNLSSPKQLGEILFTKLGLPIIKKTPKGA 594 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + ++ M + G ++ Sbjct: 595 PSTAEEVLAELAETYELPQLLM---------------------------EHRGLAKLKST 627 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374 P P+ R H Q + ++DP+ I +R I G Sbjct: 628 YTDKLPLMIKPQTGRVHTSYHQAVAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGY 687 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 KLV AD + IE R++A ++G++ L AF G+D++ T A F VA VT D R K Sbjct: 688 KLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKA 747 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + L Y A +A G+ + +E +M E + A Sbjct: 748 INFGLIYGMSAF---GLAKQLGIGRAEAQKYMDL-----YFERYPGVLEYM-ERTRQQAD 798 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMK 552 ++ T R + SR + L +A G A II R +V Sbjct: 799 AQGYVETLFGR-RLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRG 857 Query: 553 KDKNNLILMLPSGRSLVY 570 + ++ +++ LV+ Sbjct: 858 IEDQSIRMLMQVHDELVF 875 >gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 772 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 247 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 303 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 304 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 353 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 354 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 413 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 414 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 472 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 473 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 501 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 502 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 561 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 562 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 618 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + A+ + E +P Sbjct: 619 RQLNIPRKE----------------AQKYMDLYFERYP---------------------- 640 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 641 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 671 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + + G + I +A+ I + + A + +++ VHDE+ Sbjct: 672 IKSSNAARRAGAERAAINAPMQGTAADIIKRAM---IAVDAWLQAEQPRVRMIMQVHDEL 728 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + A ++ LM Sbjct: 729 VFEVHKDDLDAVAKRIHQLME 749 >gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024] Length = 881 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 95/529 (17%), Positives = 170/529 (32%), Gaps = 92/529 (17%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + E + + + E + G Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL 823 >gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby] gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby] Length = 896 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 115/682 (16%), Positives = 212/682 (31%), Gaps = 156/682 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65 ID + ++ + ++ H Q++KE LEN Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKM 123 + + N ++ +VLK N I + +L A ALK K Sbjct: 383 IGKIGQNIKYDYSVLK---NYGITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKT 439 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181 +++ + K + + G Y D +T + +L P+ + Sbjct: 440 ISYEDVAGKGAKQLRFDQIPV----------EKAGIYAAEDADITLRLHHKLYPMLDEPL 489 Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G +D + + + L+QE L G + Sbjct: 490 RNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA-GKAFNLN 548 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++L+ LF E L + T T S + F+ R+ A Sbjct: 549 SPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA----------- 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 L++ S+ P + P+ R H +Q + +SDP Sbjct: 593 -----------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R+ IA EG ++ AD + IE R++A ++ + L+AF G D++ Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V+K+QR K + L Y A +A G+ Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER---------- 748 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +DA+++ +P ++ + + + Sbjct: 749 ------QDAQHYIDTYFRRYP----------------------------KVLEYMERTRK 774 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q + G RR L LP +R L R Sbjct: 775 QAHQLGYVETLFGRR---------------LYLP-----------------EINSRNLMR 802 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDE 641 + +Q + DI+ + M+ +++ VHDE+V E + E Sbjct: 803 QKAAERTAINGPMQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVE 862 Query: 642 FNASMLYHLMTSNPSWAKGLPL 663 ++++ LM +PL Sbjct: 863 ECHAIIHKLMEQTVK--LSVPL 882 >gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1] gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1] Length = 915 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 180/584 (30%), Gaps = 79/584 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D G+ A+ ++ +F + H HD P L K LE+ Sbjct: 339 DTETTGLD--AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDP 396 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N+ ++ +L + I + +L N + A K Sbjct: 397 AKAKVGQNAKYDINILAN-GSPPIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHT 455 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176 +++ + K T + G Y D +T + L+ Sbjct: 456 TIAFEDIAGKGAKQLTFNQIT----------LDKAGPYAAEDADITLRLHHALQARLAQT 505 Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 P+ E L + I +G VD L + + V+ +L+ L G Sbjct: 506 PSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRAYELA-GETF 564 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L T L+ + G+ + T + + + Sbjct: 565 NLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGYPLPEVL---------- 614 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +Q+ S+ P Q PR R H Q + + Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I +R IAS G KL+ AD + IE R++A +A ++ L AF Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 718 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A F VA VT DQR K + L Y A +A G++ + Sbjct: 719 DVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 A E A E F+ T R + +++ L + Sbjct: 776 DRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAER 828 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 G A KR V + + + ++L LV Sbjct: 829 TAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELV 872 >gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 923 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 91/610 (14%), Positives = 191/610 (31%), Gaps = 89/610 (14%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTI 68 +D G + ++ +F +++ D + K E+ + Sbjct: 354 SLDTETTGTDPIS--AKLVGLSFSVEENQAFYVPIPQDFEEAQKIVNEFKSVYEDERILK 411 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124 + N ++ VL+ N I + I ++A P + + E L + +E Sbjct: 412 IGQNIKYDLMVLQ---NYGITLKGEIFDTMIAHYLLQPELRHGMDYLAEVYLNYQTIHIE 468 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179 E + + P EY D +T ++ EP Sbjct: 469 E-------LIGPKGKNQKNMADLPP-----SQVYEYACEDADITLKLKNVFEPKLKEEGC 516 Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G C+D + + E +L++E+ +L G + Sbjct: 517 YDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNRLEEEIHALA-GEPFNIA 575 Query: 235 CLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ LF + + T+T T + VL + + P ++ +R Sbjct: 576 SPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEHR--------- 626 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G + P P H +Q IT Sbjct: 627 ----------------------GLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTGRL 664 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +S+P+ I +R I G + AD + IE R++A ++G+ ++AF Sbjct: 665 SSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIEAFRE 724 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T A+ + +VT+++R+ K + Y +A ++ Sbjct: 725 GHDIHAATAAKIYKKPLEEVTREERSKAKTANFGIIYGITVF---GLAERMNVSRAEAKE 781 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 L+ + + + + E E + C R +S + + Sbjct: 782 LID--GYFTTYPKVKEYMQKSIETAREKGYTETIYHRKC-----YLRDINSHNAVVRGYA 834 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + G A K + + + +K+ ++L L + + + Sbjct: 835 ERNAINAPIQGSAADIIKIAMIAIYHRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQI 894 Query: 584 T-RQLTREYT 592 ++ R YT Sbjct: 895 VIEEMERAYT 904 >gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris] gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris] Length = 896 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 116/682 (17%), Positives = 213/682 (31%), Gaps = 156/682 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65 ID + ++ + ++ H Q++KE LEN Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKM 123 + + N ++ +VLK N I + +L A ALK K Sbjct: 383 IGKIGQNIKYDYSVLK---NYGITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKT 439 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181 +++ + K + + G Y D +T + +L P+ K Sbjct: 440 ISYEDVAGKGAKQLRFDQIPV----------EKAGIYAAEDADITLRLHHKLYPMLDKPL 489 Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G +D + + + L+QE L G + Sbjct: 490 RNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA-GKAFNLN 548 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++L+ LF E L + T T S + F+ R+ A Sbjct: 549 SPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA----------- 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 L++ S+ P + P+ R H +Q + +SDP Sbjct: 593 -----------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R+ IA EG ++ AD + IE R++A ++ + L+AF G D++ Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F V+K+QR K + L Y A +A G+ Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER---------- 748 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +DA+++ +P ++ + + + Sbjct: 749 ------QDAQHYIDTYFRRYP----------------------------KVLEYMERTRK 774 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q + G RR L LP +R L R Sbjct: 775 QAHQLGYVETLFGRR---------------LYLP-----------------EINSRNLMR 802 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-PDTDE 641 + +Q + DI+ + M+ +++ VHDE+V E + E Sbjct: 803 QKAAERTAINGPMQGTAADIIKKTMLAISSWEHSQKSPSAKMIMQVHDELVFEVRKEAVE 862 Query: 642 FNASMLYHLMTSNPSWAKGLPL 663 +++++LM +PL Sbjct: 863 ECHAIIHNLMEQTVK--LSVPL 882 >gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168] gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168] Length = 928 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 197/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V+ V N ++R +L N I + +L N + Sbjct: 403 ELLKPLLEDEKVSKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +E+ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+Q+ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDPAVLHKHSEEITLRLAELEQK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R I + +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIPPKDHVIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIYGMSAF---GLA 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + +A+ + E +P Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + G + I +A+ I +G + + + +++ VHDE+ Sbjct: 828 IKSSNGARRAGAERAAINAPMQGTAADIIKRAM---IAVDGWLESEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D + + ++ LM Sbjct: 885 VFEVHKDDLDVVSKKIHQLME 905 >gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22] gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22] Length = 930 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 100/597 (16%), Positives = 190/597 (31%), Gaps = 98/597 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S +++ ++ +F + HD +P+ Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLAL 406 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ + V N ++R +L N DI + +L + + Sbjct: 407 LKPLLEDEKLLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + T + A G Y D VT ++ + Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + V+ +QR K + L Y A +A Sbjct: 722 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 S +A G A KR + + +++K++ + +++ LV+ Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVF 888 >gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01] gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01] Length = 930 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 98/561 (17%), Positives = 174/561 (31%), Gaps = 87/561 (15%) Query: 34 AFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD PQ L K LE+ V N ++ +VL Sbjct: 373 SFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY 432 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ +++ + T Sbjct: 433 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 489 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190 + Y D VT + RL E L + Sbjct: 490 I----------DLDEASPYAAEDADVTLRLHNRLFANIEQDDKLKTVYEEIEMPLVPVLS 539 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D + + +L+Q+ + + ++L+ LF + GL Sbjct: 540 RIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIA-EQEFNMNSPKQLQALLFEKMGLP 598 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + Sbjct: 599 VIKKTPSGTPSTNEEVLQELALDYPLPKLILE---------------------------- 630 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 + G ++ P P R H Q +T ++DP+ I Sbjct: 631 ---YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 687 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 688 RRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 V+ +QR K + L Y A +A G+ + + +E Sbjct: 748 EDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 799 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++M E+ A E F+ T R + + SR +A G A Sbjct: 800 MQYM-EDTRSAASEQGFVETIFGR-RLHLPEIQSRNGMRRKAAERAAINAPMQGTAADII 857 Query: 542 KRRDVPLVYMKKDKNNLILML 562 K+ + + +++ N + L Sbjct: 858 KKAMLLVDQWIQEEGNGRVKL 878 >gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] Length = 934 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 106/669 (15%), Positives = 198/669 (29%), Gaps = 166/669 (24%) Query: 31 ILFAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + A + D P +L W LK LE+ V N F++++L Sbjct: 388 LPVAHDYLDAPAQLDRSWVLTT-------LKPLLEDEQALKVGQNLKFDKSLLARY---G 437 Query: 88 IPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 I + +L N + + + + K +E+ + T + Sbjct: 438 IELRGIAFDTMLESYVLNSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQI--- 494 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTIND 194 A Y D VT ++ + P + E L + I Sbjct: 495 -------ALEQASPYAAEDADVTLQLHLAMWPKLQESEDLLRVFQQIEMPLLPILSRIER 547 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G +D ++ T +Q + + T+L+++ L + ++L+ L+ + L + Sbjct: 548 TGVLIDQSILATHSQELTIRLTELEKQAHELA-EEPFNLASPKQLQAILYEKQKLPILKK 606 Query: 255 TE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T +T + VL+ P + + Sbjct: 607 TPGGAASTNEEVLAELALDYPLPKVLLE-------------------------------Y 635 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 G ++ P P R H Q +T + DP+ I +R Sbjct: 636 RGLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIR 695 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 IA G ++ AD + IE R++A ++ ++ L AF G+D++ T A F + VT Sbjct: 696 QAFIAPAGYCILAADYSQIELRIMAHLSQDKGLLAAFAEGKDIHRATAAEVFGLPLENVT 755 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 +QR K + L Y A +A + Sbjct: 756 TEQRRSAKAINFGLIYGMSAF---GLARQLNIPRGEAQ---------------------- 790 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + R + + + +Q + G Sbjct: 791 ----------------------RYMDLYFERYPGVLEYMERTRKQAADQGYVTTLD---- 824 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 GR L D+ + N R+ +Q Sbjct: 825 -------------------GRRLYLPDIHS----RNANRRKAAEREA-----INAPMQGT 856 Query: 606 SRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSW 657 + DI+ M+ +++ VHDE+V E ++ +A+ + LM + Sbjct: 857 AADIIKRAMIAVDAWLQQQAEPLVRVIMQVHDELVFEVHESVVESATQTICDLMEQSMQ- 915 Query: 658 AKGLPLKAE 666 +PLK E Sbjct: 916 -LDVPLKVE 923 >gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3] gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3] Length = 930 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 101/561 (18%), Positives = 177/561 (31%), Gaps = 87/561 (15%) Query: 34 AFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD PQ L K LE+ V N ++ +VL Sbjct: 373 SFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY 432 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ +++ + T Sbjct: 433 ---GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 489 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190 + Y D VT + RL E L E L + Sbjct: 490 I----------ELDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLS 539 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D + + +L+Q+ + + ++L+ LF + GL Sbjct: 540 RIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIA-EQEFNMNSPKQLQALLFEKMGLP 598 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + Sbjct: 599 VIKKTPSGTPSTNEEVLQELALDYPLPKLILE---------------------------- 630 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 + G ++ P P R H Q +T ++DP+ I Sbjct: 631 ---YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 687 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +AS G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 688 RRIRQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 V+ +QR K + L Y A +A G+ + + +E Sbjct: 748 EDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 799 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++M E+ A E F+ T R + + SR +A G A Sbjct: 800 MQYM-EDTRSAASEQGFVETIFGR-RLHLPEIQSRNGMRRKAAERAAINAPMQGTAADII 857 Query: 542 KRRDVPLVYMKKDKNNLILML 562 K+ + + +++ N + L Sbjct: 858 KKAMLLVDQWIQEEGNGRVKL 878 >gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55] gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55] Length = 930 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 100/597 (16%), Positives = 190/597 (31%), Gaps = 98/597 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S +++ ++ +F + HD +P+ Sbjct: 357 DTETDSLDNISAN----------MVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLAL 406 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ + V N ++R +L N DI + +L + + Sbjct: 407 LKPLLEDEKLLKVGQNLKYDRGILA---NYDIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + T + A G Y D VT ++ + Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 513 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E L + + G +D A+ H +Q + +L+Q Sbjct: 514 MWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 574 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 633 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 661 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 662 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 721 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + V+ +QR K + L Y A +A Sbjct: 722 DKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAF---GLARQ 778 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 779 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL-----YLPDIK 831 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 S +A G A KR + + +++K++ + +++ LV+ Sbjct: 832 SSNGARRAGAERAAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVF 888 >gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] Length = 931 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD + + LK LE+ V N ++ +VL Sbjct: 374 SFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY 433 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ +++ + T Sbjct: 434 ---GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 490 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190 + Y D VT + RL E L E L + Sbjct: 491 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLS 540 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D + + +L+Q+ + + ++L+ LF + GL Sbjct: 541 RIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 599 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + R Sbjct: 600 VVKKTPSGTPSTNEEVLHELALDYPLPKLILEYR-------------------------- 633 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 G ++ P P R H Q +T ++DP+ I Sbjct: 634 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 688 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 689 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 748 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + + +E Sbjct: 749 DQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 800 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++M E+ A + ++ T R + + SR +A G A Sbjct: 801 MQYM-EDTRSAAADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 858 Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K+ + + +++ N + L LV+ ++ S + + ++L Sbjct: 859 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 912 >gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b] gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b] Length = 928 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 117/676 (17%), Positives = 210/676 (31%), Gaps = 162/676 (23%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDH---PV-----ELWDCVHDPVMPQVLKEALENTDV 66 DL + + ++ + FA + PV + D + + LK LE++ Sbjct: 354 DLETDSLDTLSANIVGLAFAVAPGEAAYLPVAHDYLDAPDQLDRAAVLAQLKPLLEDSKA 413 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKME 124 V N ++R VLK N DI ++ +L N + A + + K Sbjct: 414 AKVGQNLKYDRGVLK---NYDIELNGIKYDTMLESYCLNSVGGKHDMDSLAARWLNHKTV 470 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------- 177 +E+ + T + A G Y D VT ++ ++ P Sbjct: 471 TFEEIAGKGKNQLTFNQI----------AIEQAGHYAAEDADVTLQLHLKMWPELEKEAG 520 Query: 178 ----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E L + + G +D + +Q + +L+Q+ L G + Sbjct: 521 PKKVFTEIEMPLLKVISRVERNGVLIDQNILAKHSQELTTRLAELEQQAHDLA-GEPFNL 579 Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L+T LF + G+ T +T + VL+ P + +R Sbjct: 580 SSTKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEHR--------- 630 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P P R H Q +T Sbjct: 631 ----------------------GLSKLKSTYTDKLPLMINPVTGRVHTSYHQAVTATGRL 668 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IA K++V AD + IE R++A ++ ++ L AF Sbjct: 669 SSTDPNLQNIPVRNDEGRRIRQAFIAGPDKRIVAADYSQIELRIMAHLSQDKGLLAAFAQ 728 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T + F VA ++V+ +QR K + L Y A ++ + Sbjct: 729 GEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAF---GLSRQLNIGAGEA-- 783 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 KK R + + Sbjct: 784 ------------------------------------------KKYMDLYFERYPGVLRYM 801 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + EQ G + GR L D+ T++ Sbjct: 802 EETREQAAAKG-----------------------YVETLDGRRLWLPDI--------TSS 830 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETP 637 + R+ +Q + DI+ M+ +++ VHDE+V E Sbjct: 831 NAIRRKAAERA-AINAPMQGTAADIIKRAMIAVDGWLLEQKDDKVKMIMQVHDELVFEIH 889 Query: 638 DTDEFNA-SMLYHLMT 652 +A + LM Sbjct: 890 QDAVASASDKIRQLME 905 >gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 928 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 106/627 (16%), Positives = 199/627 (31%), Gaps = 153/627 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT++QR K + L Y G AF ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIY--GMSAF-GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + +A+ + E +P Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVL 626 + ++ + + Q + DI+ M+ A + +++ Sbjct: 828 IKSSNAARRAGAERAA---------INAPTQGTAADIIKRAMIAVDAWIQAEQPRVRMIM 878 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMT 652 VHDE+V E D + A ++ LM Sbjct: 879 QVHDELVFEVHKDDLDAVAKRIHQLME 905 >gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329] Length = 930 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 101/594 (17%), Positives = 187/594 (31%), Gaps = 89/594 (14%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD + + LK LE+ V N ++ +VL Sbjct: 373 SFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY 432 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ +++ + T Sbjct: 433 ---GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 489 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190 + Y D VT + RL E L E L + Sbjct: 490 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLS 539 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D + + +L+Q+ + + ++L+ LF + GL Sbjct: 540 RIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 598 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + +T + VL P + R Sbjct: 599 VVKKTPSGAPSTNEEVLQELALDYPLPKLILEYR-------------------------- 632 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 G ++ P P R H Q +T ++DP+ I Sbjct: 633 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 687 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 688 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 747 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + + +E Sbjct: 748 DQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 799 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++M E+ A + ++ T R + + SR +A G A Sbjct: 800 MQYM-EDTRSAAADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 857 Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K+ + + +++ N + L LV+ ++ S + + ++L Sbjct: 858 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 911 >gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591] gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591] Length = 928 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 89/537 (16%), Positives = 175/537 (32%), Gaps = 78/537 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V + N F++ V+ I + +L + + Sbjct: 405 LKPLLEDESVAKIGQNLKFDKGVMARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI--- 171 + + K +E+ + T + Y D VT + Sbjct: 462 SDRYLQHKTITFEEIAGKGKNQLTFNQI----------PLEQAAVYAAEDADVTLRLHET 511 Query: 172 -FKRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + +LEP + L + + G +D + +Q + +L+ + Sbjct: 512 LWAKLEPQPELCKVFQNIDMPLVPVLSRMERTGVLIDTTILGEHSQELTQRLAELEVQAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L T L+ + L + T T + VL+ P + + Sbjct: 572 ELA-GEAFNLSSPKQLGTILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPLPKLILEH 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R A + P P R H Sbjct: 631 RELA-------------------------------KLKSTYTDKLPQMINPLTKRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I +R IA EG ++ AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSSDPNLQNIPVRNEQGRRIRQAFIAPEGYHILAADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF G D++ T A F + +VT +QR K + L Y A ++ Sbjct: 720 DAGLLRAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAF---GLSRQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + N + + + + E + A + ++ T + + H Sbjct: 777 LAIPRNEAQKYMN------LYFERYPGVQEYMERTRQQAADQGYVST-LDGRRLYLPDIH 829 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 SR + +A G A K+ + + +++++K + +++ LV+ Sbjct: 830 SRNAMSRKAAERAAINAPMQGTAADIIKKAMIAIDGWLQQEKPLVTMLMQVHDELVF 886 >gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] Length = 934 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 108/672 (16%), Positives = 207/672 (30%), Gaps = 159/672 (23%) Query: 34 AFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83 +F ++ HD + + LK LE+ V N ++ +VL Sbjct: 377 SFSVEEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPYLEDETKAKVGQNLKYDASVLARY 436 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 DI + +L N + AL+ +E+ + K T Sbjct: 437 ---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQ 493 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190 + A Y D +T + L + E L + Sbjct: 494 I----------ALEEAAPYAAEDADITLRLHNVLHAKLVTDEKLNAVFTDIELPLISVLS 543 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + +G +D L + + +L+ + G + ++L+T LF + L Sbjct: 544 RMERKGVYIDDMLLSAQSLEIGQRLDELETASFEVA-GQEFNMNSPKQLQTILFEKMELP 602 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 + T + + +Q + L++ Sbjct: 603 VIKKTPSGA-------ASTNEEVLQELALEYELPKL--------------------ILEY 635 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 G ++ P P R H Q +T ++DP+ I +R Sbjct: 636 RGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNKEGRRIR 695 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 +A G K++ D + IE R++A ++ ++ L+AF G+D++ T A V+ +VT Sbjct: 696 QAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAFSAGKDIHAATAAEVKGVSIEEVT 755 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K + L Y A +A G++ +A+++ Sbjct: 756 SEDRRRAKAINFGLIYGMSAF---GLAKQIGISRG----------------EAQDYMNVY 796 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E +P Q +E + ++A ++ Sbjct: 797 FERYP------------------------------------GVMQYMEETR-LLATEQGY 819 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 V +Y GR L + N R+ +Q Sbjct: 820 VETLY--------------GRRLYLP----EINARNAIRRKAAERAA-----INAPMQGT 856 Query: 606 SRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSW 657 + DI+ + M+ ++++ VHDE+V E + + E + LM + S Sbjct: 857 AADIIKKAMILVDNWIEAEGTGRVNLLMQVHDELVFEVKEDELEAITKQVTALMEAAVS- 915 Query: 658 AKGLPLKAE-GY 668 +PL AE G+ Sbjct: 916 -LDVPLIAESGF 926 >gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946] gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946] Length = 929 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 105/585 (17%), Positives = 190/585 (32%), Gaps = 101/585 (17%) Query: 6 IDFETRSP------------IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PV 52 +D ET + DL + + + +I +F HD Sbjct: 334 LDEETFTSWLKKLQHSELFAFDLETDSLDTLSAN--IIGISFATAPGEAAYLPVAHDYLD 391 Query: 53 MPQVL---------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS- 102 P+ L K LE+ V N F+R VLK DI + +L Sbjct: 392 APEQLDRSDVLARLKPLLEDPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYA 448 Query: 103 -NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 N + A + K +E+ + T + A Y Sbjct: 449 LNSVAGRHDMDTLASRWLQHKTVTFEEIAGKGKNQLTFNQI----------ALEQAAHYA 498 Query: 162 KGDVTVTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++ ++ P KEQ L + I G +D ++ +Q Sbjct: 499 AEDADVTLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQE 558 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + +L+ + L G + ++L+T LF + G+ T +T + VL+ Sbjct: 559 LGSRLAELELKAHELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAEL 617 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P + +R G ++ P Sbjct: 618 ALDYPLPKVILEHR-------------------------------GLAKLKSTYTDKLPL 646 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H Q +T +SDP+ I +R IA +G +++ AD Sbjct: 647 MINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRILAADY 706 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R++A ++ ++ L AF + +D++ T A F VA +V+ +QR K + L Y Sbjct: 707 SQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIY 766 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 A ++ + + +E ++M E+ E A + ++ T Sbjct: 767 GMSAF---GLSRQLNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAQKGYVST 817 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + ++ + +A G A KR + Sbjct: 818 -LDGRRLYLPDINASNAMRRKAAERAAINAPMQGTAADIIKRAMI 861 >gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909] gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909] Length = 932 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 110/692 (15%), Positives = 208/692 (30%), Gaps = 168/692 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64 D G+ + + +I +F HD + + LK LE+ Sbjct: 358 DTETDGLDTLSSN--LIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWVLATLKPLLEDD 415 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N F++++L I + +L + + A + + K Sbjct: 416 KALKVGQNLKFDQSMLARY---GIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHK 472 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 +E+ + T + A G Y D VT ++ L P + Sbjct: 473 TITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWPKLQQS 522 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + I G +D + ++ + + +L+++ L Sbjct: 523 EGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA-EEPF 581 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 582 NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR------- 634 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 635 ------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 670 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + DP+ I +R IA +G +++ AD + IE R++A ++ ++ L AF Sbjct: 671 RLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAF 730 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T A F +VT +QR K + L Y A + S Sbjct: 731 AAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLSI-------- 782 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 +A+ + E +P + Sbjct: 783 -----------PRGEAQRYMDLYFERYP----------------------------GVLE 803 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + +Q + G GR L D+ + N Sbjct: 804 YMERTRKQAADQGYVTTLD-----------------------GRRLYLPDIHS----RNA 836 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCE 635 T R+ +Q + DI+ M+ +++ VHDE+V E Sbjct: 837 TRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFE 891 Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 ++ +A + LM + A +PLK + Sbjct: 892 VHESVLESAEQKIRELMEQSMQLA--VPLKVD 921 >gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] Length = 950 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 92/558 (16%), Positives = 179/558 (32%), Gaps = 76/558 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115 LK LEN ++ V N F+ T+ I + T++L+ + A Sbjct: 429 LKPILENPNIGKVGQNLKFDMTIFAR---NGIELRGIEFDTMLLSYTLDSTGRHNMDDLA 485 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +++ + T + GEY D VT ++ + L Sbjct: 486 KRYLGHQTIGFEDIAGKGKNQLTFNQI----------PLEQAGEYAAEDADVTMKLQQVL 535 Query: 176 -----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E S E L + + G +D + + T L+ + Sbjct: 536 WGKLQSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTALEMQAHE 595 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF + GL + +T + VL + +R Sbjct: 596 LA-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEDVLEELAYSHELPKVLVEHR 654 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P P+ R H Sbjct: 655 -------------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYH 683 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +SDP+ I +R IA +G K++ AD + IE R++A ++ + Sbjct: 684 QAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 743 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF G+D++ +T A F + QVT +QR K + L Y + ++ Sbjct: 744 AGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSF---GLSRQL 800 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + + E A ++ T R + + +S Sbjct: 801 GISRADAQRYMDLYFQRYP------GVQTFMHDIREKAKAQGYVETLFGR-RLYLPEINS 853 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + G A K + L + +D ++ +++ LV+ Sbjct: 854 SNAMRRKGAERVAINAPMQGTAADIIKCAMIKLDEITRDDPDIHMIMQVHDELVFEVRSE 913 Query: 576 NRSYLNTTTRQLTREYTY 593 ++ + +Q Sbjct: 914 KIAFFSDLIKQHMEAAAE 931 >gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126] Length = 930 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 116/682 (17%), Positives = 206/682 (30%), Gaps = 168/682 (24%) Query: 27 DVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFE 76 D ++ +F ++ HD + LK LE+ V V + ++ Sbjct: 366 DAELVGVSFCIEEGEAAYVPVAHDYPDAPAQLSREFVLDALKPILESDTVIKVGQHIKYD 425 Query: 77 RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + VL N DI ++ +L N AL K +E+ + Sbjct: 426 KNVLA---NYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEEIAGKGA 482 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSS-------KEQ 183 K T + + G Y D +T I+ +L+ + E Sbjct: 483 KQLTFNQI----------SLEEAGPYAAEDADITLRLHNAIWTKLKEIPELKNLLIDVEV 532 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G +D +Q + +L+ E+ G + ++L+ L Sbjct: 533 PLACVLSRMEQEGVLIDSQRLRQQSQDLATRIAELESEVHEEA-GEPFNLGSTKQLQHVL 591 Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 F + L + T T + VL P ++ Sbjct: 592 FEKMSLPIIKKTPKGAPSTSEDVLQELALEYPLPKKIME--------------------- 630 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 + G ++ P R R H Q +T ++DP+ I Sbjct: 631 ----------YRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAVTATGRLSSTDPNLQNI 680 Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 VR + EG K V AD + IE R++A ++G++ L AF G+D++ T A Sbjct: 681 PIRNEEGRRVRQAFVPREGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHGKDIHKATAA 740 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F V +VT +QR K + L Y A ++ + N + Sbjct: 741 EVFGVPLDEVTTEQRRSAKAINFGLIYGMSAF---GLSKQLNIPRNEAQKYMD------L 791 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + ++ E A + + +T+ Sbjct: 792 YFERYPGVLEYMDSTRESAK------------------------------EKGYVETVFG 821 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTY 593 + L LP ++ R G R+ +N Sbjct: 822 RR-----------------------LYLPDIKASNGARRKGAERAAINAPM--------- 849 Query: 594 GGKLTENIVQAVSRDILAEGMMNAT---KAGYD----IVLTVHDEIVCET-PDTDEFNAS 645 Q + DI+ M+ + +++ VHDE+V E D E S Sbjct: 850 ---------QGTAADIIKMAMIKVDDWIRKNASDDVTMMMQVHDELVFEIREDKVETYVS 900 Query: 646 MLYHLMTSNPSWAKGLPLKAEG 667 + LM S + +PL E Sbjct: 901 TITALMESAAT--LNVPLVVEA 920 >gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] Length = 932 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 111/697 (15%), Positives = 206/697 (29%), Gaps = 178/697 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59 D G+ + ++ + FA D P +L W LK Sbjct: 358 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRDWVLAQ-------LKP 410 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 LE+ V N F++++L DI + +L N + A + Sbjct: 411 LLEDDKALKVGQNLKFDQSMLARY---DINLRGIAFDTMLESYVLNSVAGRHDMDSLAER 467 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K +E+ + T + A G Y D VT ++ L P Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517 Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E L + I G +D + ++ + + +L+++ L Sbjct: 518 KLQQSEGLKQVFQEIEMPLLPVLSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G ++ P P R H Q Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMISPVSGRVHTSYHQA 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T + DP+ I +R IA +G +++ AD + IE R++A ++ ++ Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKG 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F + +VT +QR K + L Y A +A + Sbjct: 726 LLAAFAAGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIYGMSAF---GLARQLNI 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + R Sbjct: 783 PRGEAQ--------------------------------------------RYMDLYFERY 798 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + +Q + G GR L ++ + Sbjct: 799 PGVLEYMERTRKQAADQGYVTTLD-----------------------GRRLYLPEIHS-- 833 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHD 630 N T R+ +Q + DI+ M+ +++ VHD Sbjct: 834 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPKVRVIMQVHD 886 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E ++ E + LM + A +PLK + Sbjct: 887 ELVFEVHESVLESTEQKVRELMEQSMQLA--VPLKVD 921 >gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51] gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51] Length = 915 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 105/583 (18%), Positives = 178/583 (30%), Gaps = 77/583 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D G+ A+ ++ +F H HD P L K LE+ Sbjct: 339 DTETTGLD--AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVLLALKPLLEDP 396 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123 V N+ ++ +L T++ + + A K Sbjct: 397 AKAKVGQNAKYDINILANGSPAIAMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTT 456 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK---------- 173 +++ + K T + G Y D +T + Sbjct: 457 IAFEDIAGKGAKQLTFNQI----------DLDKAGPYAAEDADITLRLHHALQARLAQTP 506 Query: 174 RLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L+P+ E L + I +G VD AL H + + + +L++ L G + Sbjct: 507 SLQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGEKMAELERRAYELA-GEEFN 565 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L L+ + G+ + T + + + Sbjct: 566 LGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELAELGYPLPEVL----------- 614 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 +Q+ S+ P Q PR R H Q + +S Sbjct: 615 ---------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSS 659 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 DP+ I +R IAS G KL+ AD + IE R++A +A ++ L AF D Sbjct: 660 DPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLD 719 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A F VA VT DQR K + L Y A +A G++ + Sbjct: 720 VHRATAAEVFGVALENVTVDQRRKAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYID 776 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A E A E F+ T R + +++ L + Sbjct: 777 RYFARYP------GVLAYMERTRTQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAERT 829 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 G A KR V + + + ++L LV Sbjct: 830 AINAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELV 872 >gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401] gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401] Length = 928 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 106/619 (17%), Positives = 197/619 (31%), Gaps = 98/619 (15%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 829 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573 S +A G A KR + + +++ ++ + +++ LV+ Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889 Query: 574 GNNRSYLNTTTRQLTREYT 592 ++ + QL T Sbjct: 890 KDDVDAVAKQIHQLMENCT 908 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 Q + DI+ M + A + +++ VHDE+V E D + A ++ LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905 >gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease [Shigella flexneri 2002017] gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671] gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71] gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304] Length = 928 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 106/619 (17%), Positives = 197/619 (31%), Gaps = 98/619 (15%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 829 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573 S +A G A KR + + +++ ++ + +++ LV+ Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889 Query: 574 GNNRSYLNTTTRQLTREYT 592 ++ + QL T Sbjct: 890 KDDVDAVAKQIHQLMENCT 908 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 Q + DI+ M + A + +++ VHDE+V E D + A ++ LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905 >gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens] Length = 939 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 121/697 (17%), Positives = 214/697 (30%), Gaps = 170/697 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64 D GI A+ ++ +F + H + +P+ L K LE+ Sbjct: 357 DTETTGID--AQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDP 414 Query: 65 DVTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 + V ++ F+ +L C N I + +L N + A K Sbjct: 415 NKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQK 474 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + +++ + K T + + A G Y D VT + + L Sbjct: 475 YLNHTTVSFQDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQTLFE 524 Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L+ E L + I +G VD L + + + L++E + Sbjct: 525 KLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDADLLGIQSIELGNKMVALEREAFEIA 584 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L L+ + GL + T T + VL+ + + +V Sbjct: 585 -GEEFNLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVL----- 638 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ S+ P Q PR R H Q Sbjct: 639 -------------------------MEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 673 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +SDP+ I +R +A +G KL+ AD + IE R++A ++ ++ Sbjct: 674 VASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEG 733 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF D++ T A F V +VT DQR K + L Y GA QK+ G+ Sbjct: 734 LMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGA---QKLGKDIGV 790 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + T K +R Sbjct: 791 DTKTA--------------------------------------------KAYIDTYFARY 806 Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + Q + G I +R +P + K P R+ Sbjct: 807 PGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNK---------PQERAAA------E 851 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R+ +N Q + DI+ + M+ ++L VHD Sbjct: 852 RTAINAPM------------------QGTAADIIKKAMVAVDNWLCASGLDAKVILQVHD 893 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 E+V E + + M+ +PL E Sbjct: 894 ELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVE 928 >gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70] gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218] Length = 928 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 106/619 (17%), Positives = 197/619 (31%), Gaps = 98/619 (15%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 829 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573 S +A G A KR + + +++ ++ + +++ LV+ Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889 Query: 574 GNNRSYLNTTTRQLTREYT 592 ++ + QL T Sbjct: 890 KDDVDAVAKQIHQLMENCT 908 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 Q + DI+ M + A + +++ VHDE+V E D + A ++ LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905 >gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B] gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B] Length = 928 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 97/594 (16%), Positives = 185/594 (31%), Gaps = 89/594 (14%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD + + LK LE+ V N ++ +VL Sbjct: 371 SFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDAAKAKVGQNLKYDASVLARY 430 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 DI + +L N + AL+ +++ + T Sbjct: 431 ---DIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 487 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190 + Y D VT + RL E L + Sbjct: 488 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLS 537 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D + + +L+++ + + ++L+ LF + GL Sbjct: 538 RIERTGVFIDEMKLSAQSVEITARLDELEKKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 596 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + Sbjct: 597 VVKKTPSGTPSTNEEVLQELALDYPLPKLILE---------------------------- 628 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 + G ++ P P R H Q +T ++DP+ I Sbjct: 629 ---YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAG 685 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 686 RRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 745 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 V+ +QR K + L Y A +A G+ + T +E Sbjct: 746 EDVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMDT-----YFERYPGV 797 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++M++ A + ++ T R + + SR +A G A Sbjct: 798 MQYMEDTRST-AADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 855 Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K+ + + +++ N + L LV+ ++ S + + ++L Sbjct: 856 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 909 >gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1] Length = 915 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 110/607 (18%), Positives = 185/607 (30%), Gaps = 83/607 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D G+ A+ ++ +F + H HD P L K LE+ Sbjct: 339 DTETTGLD--AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPAQLDREAVLLALKPLLEDP 396 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N+ ++ +L + I + +L N + A K Sbjct: 397 AKAKVGQNAKYDINILAN-GSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHT 455 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176 +++ + K T + G Y D +T + L+ Sbjct: 456 TIAFEDIAGKGAKQLTFNQIN----------LDKAGPYAAEDADITLRLHDALQARLAQT 505 Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 P+ E L + I +G VD L + + V+ +L+ L G Sbjct: 506 PSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRAYELA-GETF 564 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L T L+ + G+ + T + + Sbjct: 565 NLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVL---------- 614 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +Q+ S+ P Q PR R H Q + + Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I +R IAS G KL+ AD + IE R++A +A ++ L AF Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 718 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A F VA VT DQR K + L Y A +A G++ + Sbjct: 719 DVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 A E A E F+ T R + +++ L + Sbjct: 776 DRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAER 828 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 G A KR V + + + ++L LV R L + Sbjct: 829 TAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVL----EVREDLVQQVK 884 Query: 586 QLTREYT 592 R++ Sbjct: 885 DEIRQHM 891 >gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71] gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71] Length = 909 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 120/694 (17%), Positives = 215/694 (30%), Gaps = 165/694 (23%) Query: 7 DFETRS----PIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 D ET S D+ G+ E + + A + P +L + LK Sbjct: 336 DTETTSLNYMEADI--VGLSFAVERGEAAYVPLAHSYPGAPAQL----DRDAILAALKPL 389 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKL 118 LE+ + N ++ +VL DI + +L + + ALK Sbjct: 390 LEDPAKPKLGQNLKYDASVLARY---DIHMQGIAFDTMLESYVLDSTGTRHDMDSLALKY 446 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177 + +++ + K T + + G Y D VT + + L P Sbjct: 447 LGRSTTHFEDVAGKGAKQITFDQV----------GIEQAGPYAAEDAEVTLALHETLWPK 496 Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 S E L + + G +D ++ + L++E +L Sbjct: 497 LQESAGLASVFSDIELPLVPVLSRMERTGALLDEERLWEQSRELGGRLQALEEEAHNLA- 555 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 G V + ++L LF + L + T T + VL P + +R Sbjct: 556 GQVFNLGSPKQLGQILFEKLELPVIKKTPKGAPSTAEEVLQELALDYPLPKLLIEHR--- 612 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 G S+ P PR R H Q + Sbjct: 613 ----------------------------GLSKLKSTYTDKLPGMINPRTGRIHTSYHQAV 644 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA+EG ++V AD + IE R++A ++ + Sbjct: 645 TATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAGL 704 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF D++ T A F V+ V+ +QR K + L Y A +A L+ Sbjct: 705 LEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINFGLIYGMSAF---GLARQLRLD 761 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +A+ + E +P R+ Sbjct: 762 RG----------------EAQRYIDVYFERYP------------------GVREYMDNTR 787 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L + Q + +T + +R +P + ++ R R+ Sbjct: 788 ALAH--EQGYVET-------LFGRRLYLPEINVRNKN---------------RQQAAERT 823 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 +N Q + DI+ M+ + +++ VHDE+ Sbjct: 824 AINAPM------------------QGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDEL 865 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 V E + + L M++ A L ++ Sbjct: 866 VLEVAEDQLDPVCDELCKQMSAAAELAVPLLVEV 899 >gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1] gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1] Length = 915 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 112/607 (18%), Positives = 187/607 (30%), Gaps = 83/607 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D G+ A+ ++ +F H HD P L K LE+ Sbjct: 339 DTETTGLD--AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVLLALKPLLEDP 396 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N+ ++ +L + I + +L N + A K Sbjct: 397 AKAKVGQNAKYDINILAN-GSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHT 455 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176 +++ + K T + G Y D +T + + L+ Sbjct: 456 TIAFEDIAGKGAKQLTFNQIN----------LDKAGPYAAEDADITLRLHQALQARLAQT 505 Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 P+ E L + I +G VD AL H + + V+ +L+Q L G Sbjct: 506 PSVQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGVKMGELEQRAYELA-GEEF 564 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L L+ + G+ + T + + Sbjct: 565 NLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELALLGYPLPEVL---------- 614 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +Q+ S+ P Q PR R H Q + + Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I +R IAS G KL+ AD + IE R++A +A ++ L AF Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 718 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A F VA VT DQR K + L Y A +A G++ + Sbjct: 719 DVHRATAAEVFGVALQDVTTDQRRKAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 A E A E F+ T R + +++ L + Sbjct: 776 DRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAER 828 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 G A KR V + + + ++L LV R L + Sbjct: 829 TAINAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVL----EVREDLVQQVK 884 Query: 586 QLTREYT 592 R++ Sbjct: 885 DEIRQHM 891 >gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] Length = 923 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 93/611 (15%), Positives = 191/611 (31%), Gaps = 91/611 (14%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68 +D G + ++ +F ++ DP + K E+ + Sbjct: 354 SLDTETTGTDPIS--AKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEFKSVYEDERILK 411 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124 + N ++ VL+ N I + I ++A P + + E L + +E Sbjct: 412 IGQNIKYDLMVLQ---NYGITLKGEIFDTMIAHYLLQPELRHGMDYLAEVYLNYQTIHIE 468 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179 E + + P EY D +T ++ EP Sbjct: 469 E-------LIGPKGKNQKNMADLPP-----SQVYEYACEDADITLKLKNVFEPKLKEEGC 516 Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G C+D + + E L++E+ +L G + Sbjct: 517 YDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNCLEEEIHALA-GEPFNIA 575 Query: 235 CLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ LF + + T+T T + VL + + P ++ +R Sbjct: 576 SPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEHR--------- 626 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G + P P H +Q IT Sbjct: 627 ----------------------GLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTGRL 664 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +S+P+ I +R I G + AD + IE R++A ++G+ ++AF Sbjct: 665 SSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIEAFRE 724 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T A+ + +VT+++R+ K + Y +A ++ Sbjct: 725 GHDIHAATAAKVYKKPLEEVTREERSKAKTANFGIIYGITVF---GLAERMNVSRAEAKE 781 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 L+ + + + + E E + C R +S + + Sbjct: 782 LID--GYFTTYPKVKEYMQKSIETAREKGYTETIYHRKC-----YLRDINSHNAVVRGYA 834 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI--LMLPSGRSLVYRDVGNNRSYLNT 582 + G A K + +Y + K ++ ++L L + + + Sbjct: 835 ERNAINAPIQGSAADIIKIAMI-AIYRRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQ 893 Query: 583 TT-RQLTREYT 592 ++ R YT Sbjct: 894 IVIEEMERAYT 904 >gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158] Length = 891 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 105/585 (17%), Positives = 190/585 (32%), Gaps = 101/585 (17%) Query: 6 IDFETRSP------------IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PV 52 +D ET + DL + + + +I +F HD Sbjct: 296 LDEETFTSWLKKLQHSELFAFDLETDSLDTLSAN--IIGISFATAPGEAAYLPVAHDYLD 353 Query: 53 MPQVL---------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS- 102 P+ L K LE+ V N F+R VLK DI + +L Sbjct: 354 APEQLDRSDVLARLKPLLEDPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYA 410 Query: 103 -NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 N + A + K +E+ + T + A Y Sbjct: 411 LNSVAGRHDMDTLASRWLQHKTVTFEEIAGKGKNQLTFNQI----------ALEQAAHYA 460 Query: 162 KGDVTVTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++ ++ P KEQ L + I G +D ++ +Q Sbjct: 461 AEDADVTLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQE 520 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + +L+ + L G + ++L+T LF + G+ T +T + VL+ Sbjct: 521 LGSRLAELELKAHELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAEL 579 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P + +R G ++ P Sbjct: 580 ALDYPLPKVILEHR-------------------------------GLAKLKSTYTDKLPL 608 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H Q +T +SDP+ I +R IA +G +++ AD Sbjct: 609 MINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRILAADY 668 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R++A ++ ++ L AF + +D++ T A F VA +V+ +QR K + L Y Sbjct: 669 SQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIY 728 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 A ++ + + +E ++M E+ E A + ++ T Sbjct: 729 GMSAF---GLSRQLNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAQKGYVST 779 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + ++ + +A G A KR + Sbjct: 780 -LDGRRLYLPDINASNAMRRKAAERAAINAPMQGTAADIIKRAMI 823 >gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396] gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396] Length = 911 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 119/701 (16%), Positives = 212/701 (30%), Gaps = 168/701 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV 56 T D ET S Y E ++ +F + HD + + Sbjct: 332 KTFSFDTETTSLN---------YME-AEIVGVSFAVEPGKAAYVPVAHDYMGAPEQLERD 381 Query: 57 -----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSAL 109 LK LE+ + N ++ VL N + ++ +L N + Sbjct: 382 KVLAALKPLLEDPAYRKIGQNLKYDAHVLA---NHGVQLNGIAEDTMLESYVLNSTANRH 438 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A K ++ +++ + K T + + G Y D +T Sbjct: 439 DMDTLASKHLGRETIHFEDIAGKGAKQLTFNQI----------SLEQAGPYAAEDADITL 488 Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ L P KE L + + RG VD T +Q + +L Sbjct: 489 QLHHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGALVDSQRLRTHSQELAERMLEL 548 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS-SNKKLTPQAIQVF 277 ++E G + ++L+ + + G + T ++L + Sbjct: 549 EEEAYEKA-GQKFNLGSPKQLQEIFYEKLGFDIIKKTPKGQPSTAEPVLQELAEKYELP- 606 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R L++ G S+ P PR R H Sbjct: 607 ---------------------------RVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHT 639 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + +SDP+ I +R IA +G KL+ AD + IE R++A + Sbjct: 640 SYQQAVAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAHL 699 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ LKAF G D++ T A FNVA +V+ +QR K + L Y A +A Sbjct: 700 SGDEGLLKAFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAINFGLIYGMSAF---GLA 756 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + + Sbjct: 757 RQIHVERSEAQ--------------------------------------------SYIDK 772 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 R + N +++ + + G RR L + S R+L Sbjct: 773 YFERYPGVLNYMNRIRAEAQDTGYVETLFGRRLY-----------LPDIRSSNRNL---Q 818 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIV 625 R+ +N Q + DI+ M+ ++ Sbjct: 819 QAAERTAINAPM------------------QGTAADIIKRAMLAVDAWLEGDSAPPAKMI 860 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 + VHDE++ E ++ E L +M+S L ++A Sbjct: 861 MQVHDELILEVEESAVEAVKEKLTQIMSSAADLNVPLLVEA 901 >gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] Length = 935 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 121/697 (17%), Positives = 213/697 (30%), Gaps = 170/697 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64 D GI A+ ++ +F + H + +P+ L K LE+ Sbjct: 353 DTETTGID--AQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDP 410 Query: 65 DVTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 + V ++ F+ +L C N I + +L N + A K Sbjct: 411 NKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQK 470 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175 +++ + K T + + A G Y D VT + + L Sbjct: 471 YLDHTTVSFQDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQTLFD 520 Query: 176 ---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L+ E L + I +G VD L + + + L++E + Sbjct: 521 KLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDAELLGIQSIELGNKMIALEREAFEIA 580 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L L+ + GL + T T + VL+ + + +V Sbjct: 581 -GEEFNLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVL----- 634 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ S+ P Q PR R H Q Sbjct: 635 -------------------------MEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 669 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +SDP+ I +R +A +G KL+ AD + IE R++A ++ ++ Sbjct: 670 VASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEG 729 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF D++ T A F V +VT DQR K + L Y GA QK+ G+ Sbjct: 730 LMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGA---QKLGKDIGV 786 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + T K +R Sbjct: 787 DTKTA--------------------------------------------KAYIDTYFARY 802 Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + Q + G I +R +P + K P R+ Sbjct: 803 PGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNK---------PQERAAA------E 847 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R+ +N Q + DI+ + M+ ++L VHD Sbjct: 848 RTAINAPM------------------QGTAADIIKKAMVAVDNWLCASGLDAKVILQVHD 889 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 E+V E + + M+ +PL E Sbjct: 890 ELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVE 924 >gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894] gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894] Length = 927 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 102/598 (17%), Positives = 201/598 (33%), Gaps = 98/598 (16%) Query: 6 IDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ 55 +D ET S +LT + G+ Y I A + D P D + + + Sbjct: 353 VDTETDSLDNLTANLVGISFATEPGLAAY------IPVAHDYLDAP----DQLSRDRVLE 402 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 +LK LE+ + V N F+R +L+ N I + +L + + Sbjct: 403 LLKPLLEDESLVKVGQNLKFDRGILQ---NYGIELRGIAFDTMLESYILDSVSGRHDMDS 459 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + +++ + T + G Y D VT ++ Sbjct: 460 LSSRWLKHTTITFEQIAGKGKNQLTFNQI----------DLEQAGRYAAEDADVTLQLHL 509 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 ++ P + E L + I G +D A+ H +Q + ++ T+L+Q+ Sbjct: 510 KMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLTELEQKA 569 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 HEIA-GEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL- 627 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 Q+ G ++ P P+ R H Sbjct: 628 ------------------------------QYRGLAKLKSTYTDKLPQMINPKTGRVHTS 657 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 658 YHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 717 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF G+D++ T A F + V+ +QR K + L Y A ++ Sbjct: 718 RDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAF---GLSR 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + E + + ++ E + G Sbjct: 775 QLNIPRKESQKYMD--LYFERYPGVLEYMERTRKQAKEQGYVETLDGRRL-----YLPDI 827 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 ++ + +A G A KR + + +++K++ + +++ LV+ Sbjct: 828 NASNAARRAGAERAAINAPMQGTAADIIKRAMIAVDGWLQKEQPRVKMIMQVHDELVF 885 >gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] Length = 892 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 115/662 (17%), Positives = 197/662 (29%), Gaps = 155/662 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIH 91 ++ PV+L + ++L A ENT +T + N ++ TVL C F +D P+ Sbjct: 349 VGHAYEGAPVQL----DRDAVLRILAPAFENTKITKIGQNVKYDWTVLSRCGFKIDGPVF 404 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 + L L + L R + K Sbjct: 405 DTMIAAYLLNPTRRSYGLDRLAADY------------LNHRMISYQDVTGTGKNAKCFSA 452 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDV 201 Y D +T + + LE L + E L + + G VD Sbjct: 453 VPLEEAIPYAAEDADITFSLHRLLEKELKQGGLFELLETIEMPLVPVLMHMEMAGVAVDR 512 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL-----EDLTE 256 L++ ++ + KL+ E+ L G + ++L LF + GL + Sbjct: 513 EALAALSKELEGQLEKLEGEIYGLA-GETFNINSPQQLGVILFEKLGLPTQKKTKKKTGY 571 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL++ + +R A + Sbjct: 572 STDADVLTTLADHHELPALLLRHRTLA-------------------------------KL 600 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 LP R H +Q T ++DP+ I +R + Sbjct: 601 KSTYADALAELILPETGRIHTSFNQTATATGRLSSTDPNLQNIPIRTEEGRQIRKAFVPR 660 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 G V AD + +E R+LA + + ++AFE ED++ T + F + P +T+D R Sbjct: 661 PGWTFVSADYSQVELRILAHYSQDPILIEAFENDEDIHTRTASEVFQLFPEMITEDVRRQ 720 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y +A G++ Sbjct: 721 AKAINFGIVYGISPF---GLARDLGISQKMA----------------------------- 748 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 K SR S + + +A E G+ R Sbjct: 749 ---------------KNYMDSYFSRYSRVKEFMDKAIADARETGQTRTMFGR-------- 785 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 I LP S NR+ R +Q + DI+ Sbjct: 786 -------IRYLPDIDS-------PNRTLQGYAER----------AAINTPIQGTAADIMK 821 Query: 612 EGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664 M+ KA ++L+VHDEIV E P + +++ +M + A L + Sbjct: 822 LAMIATEKALAKEKLVSVMLLSVHDEIVLECPPDEVKTVSALVADIMENVCDLAVRLKVN 881 Query: 665 AE 666 Sbjct: 882 VA 883 >gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197] gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617] gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197] gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617] Length = 928 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 95/529 (17%), Positives = 169/529 (31%), Gaps = 92/529 (17%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISRERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTRLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELERKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + E + + + E + G Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLDGRRL 823 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 Q + DI+ M + A + +++ VHDE+V E D + A ++ LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905 >gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13] gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13] Length = 933 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 110/642 (17%), Positives = 200/642 (31%), Gaps = 156/642 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N F+ +L DI + +L + + Sbjct: 407 ETLKPLLEDEKALKVGQNLKFDMGLLARY---DITLRGIAFDTMLESYVLDSVGGRHDMD 463 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +E+ + K T + A Y D VT ++ Sbjct: 464 SLSDRYLGHKTVTFEEIAGKGKKQLTFNQI----------ALEQAAPYAAEDADVTLQLH 513 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + P E L + I G +D ++ T + + +L+ + Sbjct: 514 LAMWPQLKESAELLTVFNEIEMPLVPVLSHIERTGVLIDQSILATHSIELTKRLAELEIQ 573 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L + ++L+ L+ + L + T +T + VL+ P + Sbjct: 574 AHELA-EEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVIL 632 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P R H Sbjct: 633 EYR-------------------------------GLAKLKTTYTDKLPLMINPFSGRVHT 661 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T +SDP+ I +R IA EG ++V AD + IE R++A + Sbjct: 662 SYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHL 721 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ LKAF G+D++ T A F V +VT +QR K + L Y A +A Sbjct: 722 SQDEGLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIYGMSAF---GLA 778 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ A+ + E +P Sbjct: 779 RQLGIPRGE----------------AQRYMDLYFERYP---------------------- 800 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + +Q E G GR L D Sbjct: 801 ------GVLEYMERTRQQAAEQGYVSTLD-----------------------GRRLYLPD 831 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIV 625 V +++ + R+ +Q + DI+ M+ ++ Sbjct: 832 V--------SSSNGMRRKAAERA-AINAPMQGTAADIIKRAMIEVDAWLQGQDEPLVRMI 882 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E ++ E ++ + LM ++ + A +PLK + Sbjct: 883 MQVHDELVFEIHESVIEASSQRIRELMENSMTLA--VPLKVD 922 >gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14] gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14] Length = 937 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 125/699 (17%), Positives = 214/699 (30%), Gaps = 160/699 (22%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K L N + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P PR + Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + A + E A F+ T R + Sbjct: 773 -GLAKSLGIDNLSAKNFIDRYFARYP------GVAEYMQRTKEQAAAQGFVETLFGR-RL 824 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 ++ + +A G A KR + Sbjct: 825 YLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMI---------------------- 862 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 + E +A D L +++ V Sbjct: 863 --------------DVSRWLSE-----------CEASLWDCLKS----------KLIMQV 887 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P+ + +F L +M +PL AE Sbjct: 888 HDELVLEVPEAELDFVKEKLPQIMAKVDGGLLDVPLVAE 926 >gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] Length = 891 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 117/697 (16%), Positives = 207/697 (29%), Gaps = 173/697 (24%) Query: 16 LTKCGICKYAEDVCVI--------LFAFGFDDHPVELWDCVHDPV---MPQVLKEAL--- 61 L K G ++A D L F P E W +P+ L AL Sbjct: 311 LKKAG--RFAFDTETTSLVATRADLVGISFAIKPGEGWYLPVGHRYLGVPEQLDRALVID 368 Query: 62 ------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 +T + +A N+ ++ VL+ + + C +LA P+A ++ Sbjct: 369 KLRPLMADTQLAKIAQNAKYDLLVLRRA---GLEVAGLSCDTMLASYLANPAA-----KS 420 Query: 116 LKLSSQKMEEGKELIAR-FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L + EL+ + Y D +T + + Sbjct: 421 HGLDTLA----SELLGYRTIGYTEVTGKGKKQIGFEEVEIEKATVYATEDADITLRLADK 476 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LEP ++ E L + + +G +D L+ + L+ E+ Sbjct: 477 LEPQLAETGQGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADMKTRLATLEGEIHE 536 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281 L+ G + ++L LF L T+T T VL++ + P A +V Sbjct: 537 LS-GRSFNVASPKQLGEVLFEHLKLPRGKKTKTGWSTDVEVLTNLAEEHPIAARVL---- 591 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + ++ P P R H +Q Sbjct: 592 ---------------------------DYRSVAKLKSTYCDALPKLIHPDTGRIHTSFNQ 624 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R + +EG L+ AD + +E R+LA MA E Sbjct: 625 AVTATGRLSSSDPNLQNIPIRTEEGRRIREAFVPAEGNLLLAADYSQVELRILAHMADEP 684 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++F GED++ T + F V VT + R K + + Y A +A + G Sbjct: 685 ALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTINFGVLYGMSAF---GLAKSLG 741 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + ++ + Sbjct: 742 IARK-----------------------------------------EAQTYIDNYFARYPK 760 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V E + + + +R VP + K Sbjct: 761 VLEFMEAKKAEARE--KQYVTTLLGRRCAVPEIASKNGA---------------VRGYAE 803 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 R+ +N +Q + DI+ M+ K +VL VHD Sbjct: 804 RNAINYP------------------IQGSAADIIKVAMLRIHERLKAEKLETKMVLQVHD 845 Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 E+V + P ++ L M +PL + Sbjct: 846 ELVFDMPAAEQAAVENLVREQMEHAFE--LDVPLLVD 880 >gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440] gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440] Length = 915 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 110/607 (18%), Positives = 185/607 (30%), Gaps = 83/607 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D G+ A+ ++ +F + H HD P L K LE+ Sbjct: 339 DTETTGLD--AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDP 396 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N+ ++ +L + I + +L N + A K Sbjct: 397 AKAKVGQNAKYDINILAN-GSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHT 455 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176 +++ + K T + G Y D +T + L+ Sbjct: 456 TIAFEDIAGKGAKQLTFNQIN----------LDKAGPYAAEDADITLRLHHALQARLAQT 505 Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 P+ E L + I +G VD L + + V+ +L+ L G Sbjct: 506 PSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRAYELA-GETF 564 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L T L+ + G+ + T + + Sbjct: 565 NLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVL---------- 614 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +Q+ S+ P Q PR R H Q + + Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I +R IAS G KL+ AD + IE R++A +A ++ L AF Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 718 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A F VA VT DQR K + L Y A +A G++ + Sbjct: 719 DVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 A E A E F+ T R + +++ L + Sbjct: 776 DRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPDINAKNPALRKGAER 828 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 G A KR V + + + ++L LV R L + Sbjct: 829 TAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVL----EVREDLVQQVK 884 Query: 586 QLTREYT 592 R++ Sbjct: 885 DEIRQHM 891 >gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107] gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107] Length = 937 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 94/513 (18%), Positives = 154/513 (30%), Gaps = 77/513 (15%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 LK LE+ + N ++R+VL N I + +L N + S Sbjct: 413 QLKPLLEDEHKIKIGQNIKYDRSVL---LNYGITLRGIKYDTMLESYVWNSVASRHNMDD 469 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A K +EL + K T L G Y D +T + + Sbjct: 470 LAQTYLDYKTVTFEELAGKGVKQLTFNQL----------KIEDAGHYAAEDADITLRLHQ 519 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 P + E L + I G VD L + + +L+++ Sbjct: 520 FFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAKLLGQHSIELGERMVQLERKA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + ++L LF + L + T T T + VL P Sbjct: 580 YELA-GQEFNLSSPKQLGVILFEQLQLPVIKKTPTGTPSTAEEVLQELALDYPLPK---- 634 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +++ ++ P P R H Sbjct: 635 ---------------------------VIMEYRAMAKLKSTYTDKLPLMINPATGRIHTN 667 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + + DP+ I +R IA G KLV AD + IE R++A ++ Sbjct: 668 YHQAVAATGRLSSQDPNLQNIPIKTDEGRRIRQAFIAPAGYKLVAADYSQIELRIMAHLS 727 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AFE G D++ T A F VA VT + R K + L Y A +A Sbjct: 728 SDSGLLSAFEKGLDVHRATAAEVFGVALDSVTPEMRRSAKAINFGLIYGMSAF---GLAK 784 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + N + + + + N A E ++ T R + Sbjct: 785 QLHVGRNEAQQYID------RYFERYPGVQRYMNNIRAQAHEQGYVETLFGR-RLYLPDI 837 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +++ + G A K + Sbjct: 838 NAKNKNFQLAAERTAINAPMQGTAADIIKTAMI 870 >gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001] gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001] Length = 1047 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 118/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115 LK LE+ V N ++ +VL +D+ T++++ A Sbjct: 521 LKPLLEDAGTLKVGQNLKYDFSVLHRY-GIDVAPFD--DTMLISYVLDAGKGGHGMDELA 577 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174 + + ++ RNK R A Y D VT +++ Sbjct: 578 RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 626 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++P E L + + G +D + L+ +L++E++ Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G +++ LF + GL T + ++ + QA + Sbjct: 687 DA-GEKFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L + S+ +R H T Sbjct: 742 ----------------------ILNWRQLSKLKSTYTDSLQEHADRGTNRVHTSFALAAT 779 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A EGKKL+ AD + IE R+LA +A Sbjct: 780 TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE G D++ T + F V Q+T D R K + + Y A +A G+ Sbjct: 840 EAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + +K E + ++ + K++ R+K V+ Sbjct: 897 EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L+ + Y + NN PS R+ V R Sbjct: 933 LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N + G + I +A++R E + A K ++L VHDE+V E PD Sbjct: 959 INAPIQ---------GTAADIIRRAMTR---MEDALGAEKLAARMLLQVHDELVFEVPDD 1006 Query: 640 D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + E ++ H+M P+ A L PL E Sbjct: 1007 EVEATIPVIAHVMEEAPAPALSLSVPLVVEA 1037 >gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] Length = 887 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 101/539 (18%), Positives = 177/539 (32%), Gaps = 79/539 (14%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 LK LEN + V N ++ +V+ I + +LA N + Sbjct: 362 QLKPLLENPQLAKVGQNLKYDASVVARY---GITMRGIAHDTMLASYVYNSVGGKQDMDS 418 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ +++ + T + Y D VT + Sbjct: 419 LALRFLQHSCISFEQVAGKGKNQLTFNQI----------DLEQAAPYAAEDADVTLRLHH 468 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 RL+ L E L + + G +D L +Q + +L+++ Sbjct: 469 RLQALLEADAPLFGVYRDIEVPLVPVLSRMERTGVLIDDQLLAIQSQEIAQRLVELERKA 528 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + ++L+T LF + L + T +T + VL P + Sbjct: 529 YELAD-QEFNLSSPKQLQTILFEQMKLPVVKKTPSGTPSTNEEVLQELALDYPLPAVILE 587 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R G ++ P P R H Sbjct: 588 YR-------------------------------GLAKLKSTYTDKLPKMINPTTGRVHTS 616 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R IA G K++ D + IE R++A ++ Sbjct: 617 YHQAVTATGRLSSTDPNLQNIPIRNQEGRRIRQAFIAPSGWKIMAVDYSQIELRIMAHLS 676 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ L AF+ G+D++ T A V+ QVT +QR K + L Y A +A Sbjct: 677 GDPALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNFGLIYGMSAF---GLAK 733 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + H + + +E R+M+E A E ++ T R + + Sbjct: 734 QLGIPRSEAQHYMD-----KYFERYPGVLRYMEETRSM-AAEQGYVETLFGR-RLHLPEI 786 Query: 514 HSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 SR +A G A II + V + + + L++ LV+ Sbjct: 787 QSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDNWIETEGQGRVKLLMQVHDELVF 845 >gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13] gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13] Length = 925 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 97/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62 D ET ID K G+ + +F ++ + + + AL+ Sbjct: 357 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 406 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 N + N F+ VL+ ++ + + ++A P A Sbjct: 407 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 463 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + +ELI + L RN P EY D VT ++ P K Sbjct: 464 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADVTLKLKNYFAPELKK 514 Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L Y+ + G +D + + KL+QE+ L G Sbjct: 515 EGLESLFTTIEMPLIYVLAEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GAEF 573 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF L T+T T + VL + P ++ Sbjct: 574 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLE-------- 625 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + G + P P+ + H +Q +T Sbjct: 626 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 662 Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I + +R I AD + IE R++A ++G+ ++ Sbjct: 663 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIE 722 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++G D++ T A+ + + +VT D R K + Y +A G+ + Sbjct: 723 AFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 779 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L+ + + E + A E ++ T +R K+ +S + + Sbjct: 780 ESKELIDG------YFSTYPRIKEYMEESVKVAKEKGYVETIFKR-KRFLPDINSHNAVV 832 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 + G A K V + +++ ++L L + Sbjct: 833 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 889 >gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Shigella flexneri 2930-71] Length = 884 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 106/619 (17%), Positives = 197/619 (31%), Gaps = 98/619 (15%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 360 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 417 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 418 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 467 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 468 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 527 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 528 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 586 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 587 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 615 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 616 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 732 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 733 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 785 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573 S +A G A KR + + +++ ++ + +++ LV+ Sbjct: 786 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 845 Query: 574 GNNRSYLNTTTRQLTREYT 592 ++ + QL T Sbjct: 846 KDDVDAVAKQIHQLMENCT 864 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 Q + DI+ M + A + +++ VHDE+V E D + A ++ LM Sbjct: 805 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 861 >gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] Length = 897 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 109/688 (15%), Positives = 200/688 (29%), Gaps = 167/688 (24%) Query: 14 IDLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHDPVMP-------QVLKEALENT 64 +D G+ + L F D+ V P +VL L +T Sbjct: 331 VDTETDGLDP----LTCRLVGVSFAVDEGRACYVPLAAPDVRPLPADVVREVLSPLLVST 386 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 +V V N F+ VL+ + ++A L++ L + Sbjct: 387 EVVKVGQNLKFDYHVLRRW---GVRPEGPFFDTMVAAWL-----LESDAGRYNLDRLAEK 438 Query: 125 E-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE- 182 G I + + ++ G Y D + + + L+ E Sbjct: 439 YLGWRTIHY-------KDVVEKGASFETVPVAEAGVYAAEDADIALRLSRVLKERLEAEG 491 Query: 183 ---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + + G +D + ++ + +++E+ L G + Sbjct: 492 LGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGRELEERISTIEKEIFEL-VGHEFNV 550 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L+ LF+E GL T+T VL P A +V R Sbjct: 551 GSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAARDPVAAKVLEYRSL-------- 602 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ V P P R H Q+ T Sbjct: 603 -----------------------TKLKNTYVDVLPGLVNPGTGRLHTWFSQVGTATGRLS 639 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + DP+ I +R + G + AD + IE +LA ++ + +AF G Sbjct: 640 SKDPNLQNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREG 699 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T + F V P VT +QR I K + + Y A +++ G+ Sbjct: 700 EDVHRATGSLLFGVPPEAVTPEQRRIAKTINFGVIYGMSAF---RLSRELGIPRKEAERF 756 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + R E A E ++ Sbjct: 757 IDA------YFTTYAGVRAFIERTIAEAEEKGYV-------------------------- 784 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + ++R +P + + + G R +NT Sbjct: 785 -----------TTLFGRKRPLPYITSRNKT---------------QKTGAERIAVNTP-- 816 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639 +Q DI+ M++ ++L VHDE++ E P Sbjct: 817 ----------------IQGSGADIIKLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPE 860 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ M +PL+ E Sbjct: 861 ELEVMKRLVRERMEGVV--RLSVPLRVE 886 >gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236] gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236] Length = 932 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 114/697 (16%), Positives = 209/697 (29%), Gaps = 178/697 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59 D G+ + ++ + FA D P +L W LK Sbjct: 358 DTETDGLDTLSSNLIGMSFAVAPGEAAYLPLAHDYLDAPAQLDRNWVLAT-------LKP 410 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 LEN V N F++++L I + +L + + A + Sbjct: 411 LLENEKALKVGQNLKFDQSMLARY---GIELRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K +E+ + T + A G Y D VT ++ L P Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 517 Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E L + I G +D + ++ + + +L+++ L Sbjct: 518 KLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 578 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 634 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G ++ P P R H Q Sbjct: 635 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T + DP+ I +R IA +G +++ AD + IE R++A ++ ++ Sbjct: 666 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKG 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F + VT +QR K + L Y A +A + Sbjct: 726 LLAAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A+ + E +P +E Sbjct: 783 PRGE----------------AQRYMDLYFERYP-GGLE---------------------- 803 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + +Q E G GR L D+ + Sbjct: 804 -----YMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 833 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630 N R+ +Q + DI+ M+ +++ VHD Sbjct: 834 --RNANRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHD 886 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E+V E ++ +A + LM + A +PLK + Sbjct: 887 ELVFEVHESVLESAEQKIRDLMEQSMQLA--VPLKVD 921 >gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9] gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9] Length = 988 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 110/669 (16%), Positives = 221/669 (33%), Gaps = 136/669 (20%) Query: 33 FAFGFDDHPVELWDCVH------DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLK 81 +G ++ V H + +P L++ L + D N+ F+R + K Sbjct: 410 CCWGTGENDVAYIPLGHNITSNLEKNLPLNTVLSTLEKILVSGDYPKTFQNAKFDRLIFK 469 Query: 82 ACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 I + + +LA P AL+ ++ E +++ + Sbjct: 470 ---YQGITLDGVVFDPMLASYVLNPDRTHNLTDLALRYLGLQLTEYDDIVQK-------S 519 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLD 189 +R K + YC V T ++ +L L EQ L + Sbjct: 520 GKKERQKTIADISIHTVANYCGKQVYATWQLVGKLREELNEIPALFKLLVDVEQPLEVVL 579 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + RG ++ A L+Q ++ + L+ + + G + ++L LF + GL Sbjct: 580 AEMEHRGVIINSAYLQQLSQHIESDLATLEIKATKIA-GEKFNLGSPKQLSYILFEKLGL 638 Query: 250 HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 + + T ++ +KL ++ G + Sbjct: 639 STKYSRKISTGYSTDAATLEKLQE--------------------------VDQTGFVDAI 672 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362 +++ ++ P + R H +Q T +S+P+ I S Sbjct: 673 IEYRTLAKLKSTYVDALPELVNHKTQRIHTNFNQTATATGRLSSSNPNLQNIPIRTAFSR 732 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + G +V AD + IE R+LA ++ E ++A+ +D++ T F+ Sbjct: 733 QIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK--E 790 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT ++R K + + Y G K + +TG++ N ++ + Sbjct: 791 DVTSEERRFAKTINFGVIYGMGV---LKFSRSTGVDKNIANEFIQKFNQRYPL------V 841 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E + AI ++ T R ++ + + + +L Sbjct: 842 FTYLETIKKQAISQGYVETILGR-RRYFDFTNKTLQQL---------------------- 878 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 K K+ + L ++L D G RS N + Sbjct: 879 ----------KGKDLQEIELNKLKNLGPYDAGLLRSAANAP------------------I 910 Query: 603 QAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657 Q S DI+ M+ + ++L VHDE+V E P ++ + +M + Sbjct: 911 QGSSADIIKIAMVRLHEVLRRYQAKLLLQVHDELVFEVPPSEWDELQLQIKSVMENAMK- 969 Query: 658 AKGLPLKAE 666 +PL + Sbjct: 970 -LSVPLVVD 977 >gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB] gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB] Length = 928 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 102/540 (18%), Positives = 186/540 (34%), Gaps = 81/540 (15%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 LK LE+ + V N ++R VLK N DI + +L N + Sbjct: 403 QLKPLLEDENAWKVGQNLKYDRGVLK---NYDIELAGIKFDAMLESYILNSVVGKHDMDS 459 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + + K +E+ + T + A Y D VT ++ Sbjct: 460 LAARWLNHKTVTFQEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHL 509 Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 ++ P KE L + I G +D ++ ++ + +L+ + Sbjct: 510 KMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQSILAQHSKELTARLAELELKA 569 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 L G + ++L+ LF + G+ T +T + VL+ P + Sbjct: 570 HELA-GEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILE 628 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G S+ P P R H Sbjct: 629 HR-------------------------------GLSKLKSTYTDKLPLMINPISGRVHTS 657 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R +A++G ++V AD + IE R++A ++ Sbjct: 658 YHQAVTATGRLSSADPNLQNIPVRNDEGRRIRQAFVAAKGHRIVAADYSQIELRIMAHLS 717 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF GED++ T + F VA +V+ +QR K + L Y A ++ Sbjct: 718 QDKGLLDAFAQGEDIHRATASEVFGVALDKVSGEQRRSAKAINFGLIYGMSAF---GLSR 774 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQ 512 + + +E R+M EN + A + ++ T R + W Sbjct: 775 QLNIGAGEAKKYMDL-----YFERYPGVLRYM-ENTRQLAASNGYVETLEGR--RLWLPD 826 Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 S + +A G A II R V +++ N + +++ LV+ Sbjct: 827 IKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDEWLEQQNDNAVRMIMQVHDELVF 886 >gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] Length = 939 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 99/601 (16%), Positives = 193/601 (32%), Gaps = 96/601 (15%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------DCVHD-----PVM 53 ID ET S A + ++ +F + + + W HD + Sbjct: 357 IDTETTSLN----------AMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGAPEQL 406 Query: 54 P-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLP 106 P LK LEN + V N ++ + K N I + +L N + Sbjct: 407 PIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFK---NAGIEVQGMAYDTMLESYCFNSVA 463 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + AL + K++ K +T + Y D Sbjct: 464 TRHNMDDLALTYLNHSTIHFKDIAGTGKKQKTFNQI----------ELETASPYAAEDAD 513 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVER 215 +T ++ + L P E L+ + + I G +D + + + + Sbjct: 514 ITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLADQSYELGQKL 573 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 T+L+Q+ L G + ++L+ LF L + T + Sbjct: 574 TELEQKAH-LIAGTPFNLNSSKQLQEVLFERLELPIVKKTPKGQPSTAEPVLVQLAEDGH 632 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 N L++ ++ P Q + R Sbjct: 633 EMPNL--------------------------ILEYRSLAKLKSTYTDSLPKQINQQTGRV 666 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H Q + +++P+ I +R IA G +L+ +D + IE R++A Sbjct: 667 HTSYQQAVASTGRLSSTEPNLQNIPIRSAEGRRIRQAFIAQPGYRLMASDYSQIELRIMA 726 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++G+ LKAF G+D++ T A FN+ +VT +QR K + L Y A Sbjct: 727 HLSGDASLLKAFAEGKDIHQATAAEIFNMPLEEVTSEQRRSAKAVNFGLIYGMSAF---G 783 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A ++ + N + N+ +EN + + +G Sbjct: 784 LAKQLNISRGLAQEYI--NLYFARYPGVANYMESTKENAKQTGYVETLMGRRL-----YL 836 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLV 569 +++ +L + G A K V + ++ + ++ +++ LV Sbjct: 837 PDINAKNGQLRQYAERTAINAPMQGTAADIIKTAMVKMQQWLDQTPCDIKMLMQVHDELV 896 Query: 570 Y 570 + Sbjct: 897 F 897 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 109/688 (15%), Positives = 198/688 (28%), Gaps = 167/688 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAF--GFDDHPVELWDCVHDPVMP-------QVLKEALENT 64 +D G+ + L D+ V P +VL L + Sbjct: 331 VDTETDGLDP----LTCRLVGVSLAVDEGRACYVPLAAPDVRPLPADVVREVLTPLLASQ 386 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 V+ V N F+ VL+ + ++A L++ L + Sbjct: 387 KVSKVGQNLKFDYHVLRRW---GVRPEGPFFDTMVAAWL-----LESDAGRYNLDRLAEK 438 Query: 125 E-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181 G I + + ++ G Y D + + + L+ Sbjct: 439 YLGWRTIHY-------KDVVEKGASFETVPVAEAGVYAAEDADIALRLSRVLKERLEAGD 491 Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L + + + G +D + +D + ++ E+ L G + Sbjct: 492 LGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGRELDERISNIENEIFDL-VGHEFNV 550 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L+ LF+E GL T+T VL P A +V R Sbjct: 551 GSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAAQDPVAAKVLEYRSL-------- 602 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ V P P R H Q+ T Sbjct: 603 -----------------------TKLKNTYVDVLPGLVNPETGRLHTWFSQVGTATGRLS 639 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + DP+ I +R + G + AD + IE +LA ++G+ +AF G Sbjct: 640 SKDPNLQNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSGDPALCRAFREG 699 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T + F V P VT +QR I K + + Y A +++ G+ Sbjct: 700 EDVHRATGSLLFGVPPETVTPEQRRIAKTINFGVIYGMSAF---RLSRELGIPRKEAERF 756 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + R E A E ++ Sbjct: 757 INA------YFTTYAGVRAFIERTIAEAEEKGYV-------------------------- 784 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + ++R +P + + + G R +NT Sbjct: 785 -----------TTLFGRKRPLPYITSRNKT---------------QKTGAERIAVNTP-- 816 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639 +Q DI+ M++ ++L VHDE++ E P Sbjct: 817 ----------------IQGSGADIIKLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPE 860 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ M +PL+ E Sbjct: 861 ELEVMKRLVRERMEGVV--RLSVPLRVE 886 >gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25] gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25] gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25] gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25] Length = 928 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 97/594 (16%), Positives = 185/594 (31%), Gaps = 89/594 (14%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD + + LK LE+ V N ++ +VL Sbjct: 371 SFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDAAKAKVGQNLKYDASVLARY 430 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 DI + +L N + AL+ +++ + T Sbjct: 431 ---DIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 487 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQ 190 + Y D VT + RL E L + Sbjct: 488 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLS 537 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D + + +L+++ + + ++L+ LF + GL Sbjct: 538 RIERTGVFIDEMKLSAQSVEITARLDELEKKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 596 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + R Sbjct: 597 VVKKTPSGTPSTNEEVLQELALDYPLPKLILEYR-------------------------- 630 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 G ++ P P R H Q +T ++DP+ I Sbjct: 631 -----GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAG 685 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A + Sbjct: 686 RRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGLDI 745 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + + +E Sbjct: 746 EQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 797 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++M++ A + ++ T R + + SR +A G A Sbjct: 798 MQYMEDTRST-AADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 855 Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K+ + + +++ N + L LV+ ++ S + + ++L Sbjct: 856 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 909 >gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937] gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937] Length = 944 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 89/537 (16%), Positives = 176/537 (32%), Gaps = 78/537 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ + + N F++ V+ I + +L + + Sbjct: 421 LKPLLEDDGIRKIGQNLKFDKGVMARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSL 477 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + T + + Y D VT + + Sbjct: 478 SERYLQHKTITFEEIAGKGKNQLTFDQI----------PLAQASVYAAEDADVTLRLHET 527 Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L +QEL + Q I G +D + ++ + +L+ + Sbjct: 528 LWAKLEPQQELRKVFQNIDMPLVPVLSRIERTGVLIDTTILAEHSRELTQRLAELEVQAH 587 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L L+ + L + T T + VL+ P + + Sbjct: 588 ELA-GEAFNLSSPKQLGAILYEKLQLPVIKKTPKGAPSTNEEVLAELALDYPLPKLILEH 646 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P R H Sbjct: 647 R-------------------------------GLAKLKSTYTDKLPQMINPLTRRVHTSY 675 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I +R IA EG +++ AD + IE R++A ++ Sbjct: 676 HQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRILAADYSQIELRIMAHLSR 735 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF G D++ T A F + +VT +QR K + L Y A Sbjct: 736 DAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAF-------- 787 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 GL+ + + + + E + A++ ++ T + + H Sbjct: 788 -GLSRQLAIPRSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGYVST-LDGRRLYLPDIH 845 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 SR +A G A K+ + + +++++K + +++ LV+ Sbjct: 846 SRNVNSRKAAERAAINAPMQGTAADIIKKAMIAIDAWLRQEKPLVTMLMQVHDELVF 902 >gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6] gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6] Length = 931 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 116/697 (16%), Positives = 210/697 (30%), Gaps = 170/697 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENT 64 D GI + ++ +F H H + + LK LE+ Sbjct: 349 DTETTGIDAH--QAQLVGVSFAVQPHEAAYIPLTHAYIGVPDQLDRDTVLRALKPLLEDP 406 Query: 65 DVTIVAHNSYFERTVLKACFNLDIP-----IHRWICTLVLARS--NGLPSALKAVGEALK 117 + ++ F+ +L C P + +L N + A K Sbjct: 407 TKLKIGQHAKFDMNILANCAIDGDPAQGITVQGIAFDTMLESYVLNATATRHDMDSLAKK 466 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +++ + K T + + A G Y D VT + + L Sbjct: 467 YLDYDTVSFQDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQELHA 516 Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L+ E L + I +G VD L + + + +L+++ + Sbjct: 517 QLAAIPSLASVLTDIEMPLVPVLARIERQGALVDAQLLGVQSIELGNKMVELERQAFEIA 576 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L L+ + G+ + T T + VL+ + +V Sbjct: 577 -GEAFNLGSPKQLGAILYEKLGMPVLKKTGKGQASTAEDVLAKLAEDDYPLPKVL----- 630 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 +Q+ S+ P Q PR R H Q Sbjct: 631 -------------------------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +SDP+ I +R +A +G KL+ AD + IE R++A ++ ++ Sbjct: 666 VAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSKDEG 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF D++ T A F V +VT DQR K + L Y GA QK+ G+ Sbjct: 726 LMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINFGLIYGMGA---QKLGKDIGV 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + T K +R Sbjct: 783 DTKTA--------------------------------------------KAYIDVYFARY 798 Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + Q + G +R +P ++ K P R+ Sbjct: 799 PGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNK---------PQERAAA------E 843 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R+ +N Q + DI+ + M+ ++L VHD Sbjct: 844 RTAINAPM------------------QGTAADIIKKAMVRVDNWLTASGLDAKVILQVHD 885 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 E+V E + + M++ +PL E Sbjct: 886 ELVLEVREDLVAEVSEKVREHMSAAAQ--LDVPLLVE 920 >gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1] gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1] Length = 922 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 103/591 (17%), Positives = 190/591 (32%), Gaps = 91/591 (15%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALEN 63 +D + Y ++ +F + HD V PQ L + LE+ Sbjct: 347 VDTETTSLD-YM-VAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILED 404 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 + V N ++ +VL N I + +L N + S G ALK Sbjct: 405 AKLKKVGQNLKYDISVLA---NAGITLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGH 461 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +++ + K T + + Y D +T + + L P K Sbjct: 462 KNIAFEDIAGKGAKQLTFNQI----------SLETAAPYAAEDADITLRLHQHLWPRLEK 511 Query: 182 EQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E EL ++ I +G +D L ++ + + +L+ + + G Sbjct: 512 EAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQQSEELARKIDELETKAYDIA-GEK 570 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ F + G + T T + VL P + +R Sbjct: 571 FNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSL---- 626 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ P + R H Q Sbjct: 627 ---------------------------TKLKSTYTDKLPLMVNAKTGRVHTSYHQANAAT 659 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA EG+K++ AD + IE R++A ++ + L A Sbjct: 660 GRLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNA 719 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T A F VT +QR K + L Y A +A + N Sbjct: 720 FAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAF---GLARQLDIPRNE 776 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + R+M+E A + ++ T R + + R + Sbjct: 777 AQTYIDT-----YFARYPGVLRYMEETRA-SAADLGYVSTLFGR-RLYLPEIRDRNAMRR 829 Query: 522 NELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +A G A II + + + + +++ LV+ Sbjct: 830 QAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVF 880 >gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163] Length = 929 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 96/512 (18%), Positives = 172/512 (33%), Gaps = 77/512 (15%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N F+R VLK DI + +L N + Sbjct: 405 LKPLLEDPQAQKVGQNLKFDRGVLKRY---DIELQGIRFDTMLESYALNSVAGRHDMDTL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + K +E+ + T + A Y D VT ++ + Sbjct: 462 ASRWLNHKTVTFEEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHVK 511 Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P KEQ L + I G +D + T +Q + +L+ + Sbjct: 512 MWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDPGILATHSQELGSRLAELELKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + G+ T +T + VL+ P + + Sbjct: 572 ELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEH 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPHSGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I +R IA +G ++V AD + IE R++A ++ Sbjct: 660 HQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQ 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF + +D++ T A F V+ +V+ +QR K + L Y A ++ Sbjct: 720 DKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAF---GLSRQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + +E ++M E+ E A + ++ T + + Sbjct: 777 LNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAQKGYVST-LDGRRLYLPDIK 829 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + +A G A KR + Sbjct: 830 ASNAMRRKAAERAAINAPMQGTAADIIKRAMI 861 >gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01] gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01] Length = 960 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 111/599 (18%), Positives = 195/599 (32%), Gaps = 95/599 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL----- 57 + D ET + ID A+ ++ +F H + +PQ L Sbjct: 381 IAFDSET-TSID---------AQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQLDRDAV 430 Query: 58 ----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 K LE+ V ++ ++ VL + I + +L + + Sbjct: 431 LNALKPILEDPAKAKVGQHAKYDINVLANA-STPIMVQGVAFDTMLESYVLDSTATRHDM 489 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169 ALK + +++ + K T + + A G Y D VT Sbjct: 490 DSLALKYLNHSTIRFEDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRL 539 Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 E++ RLE + E L + I G VD L + + + +L++ Sbjct: 540 HQELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELER 599 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + G + ++L L+ + G + T T + VL+ + + +V Sbjct: 600 KAFEIA-GEEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDYELPKV 658 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +Q+ S+ P Q PR R H Sbjct: 659 L------------------------------MQYRSLSKLKSTYTDKLPEQINPRTGRIH 688 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q + +SDP+ I +R +A +G KL+ AD + IE R++A Sbjct: 689 TSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLMAADYSQIELRIMAH 748 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A ++ L AF D++ T A F V QVT DQR K + L Y A + Sbjct: 749 LAKDEGLLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMSAF---GL 805 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A + + A E+ A E ++ T R + Sbjct: 806 AKQIDVERKEAQAYIDRYFARYP------GVLTYMESTRAQAAEQGYVETVYGR-RLYLP 858 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLV 569 + H++ + +A G A KR + + +D ++L LV Sbjct: 859 EIHAQNQAMRKGAERAAINAPMQGTAADIIKRAMIAVDGWLQDSGIDARIILQVHDELV 917 >gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11] gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11] Length = 932 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 111/676 (16%), Positives = 214/676 (31%), Gaps = 167/676 (24%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F ++ HD + + LK LE+ + V N ++ +VL Sbjct: 375 SFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKVGQNLKYDASVLARY 434 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 DI + +L N + AL+ +E+ + K T Sbjct: 435 ---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQ 491 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIF----------KRLEPL-SSKEQELWYLDQ 190 + A Y D +T + ++L+ + + E L + Sbjct: 492 I----------ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLS 541 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + +G +D L + + +L++ + G + ++L+T LF + L Sbjct: 542 RMERKGVYIDDMLLSAQSLEIGQRLDELEKAAFEVA-GEEFNMNSPKQLQTILFEKMELP 600 Query: 251 LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T + T + VL P + R Sbjct: 601 VIKKTPSGAASTNEEVLQELALDYPLPKLILEYR-------------------------- 634 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 G ++ P P R H Q +T ++DP+ I Sbjct: 635 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++ ++ L AF G+D++ T A V+ Sbjct: 690 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSI 749 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT + R K + L Y A +A G+ +A+++ Sbjct: 750 EEVTSEDRRRAKAINFGLIYGMSAF---GLAKQIGIPRG----------------EAQDY 790 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 E +P Q +E + ++A Sbjct: 791 MNVYFERYP------------------------------------GVMQYMEETR-LLAT 813 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 ++ V +Y GR L ++ N R+ + R+ Sbjct: 814 EQGYVETLY--------------GRRLHLPEI-NARNGM-------RRKAAERA-AINAP 850 Query: 602 VQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTS 653 +Q + DI+ + M+ K ++++ VHDE+V E + + + + LM Sbjct: 851 MQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQ 910 Query: 654 NPSWAKGLPLKAE-GY 668 +PL AE G+ Sbjct: 911 AVQ--LDVPLVAEAGF 924 >gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille] gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille] Length = 912 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 116/686 (16%), Positives = 207/686 (30%), Gaps = 174/686 (25%) Query: 5 FIDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP 54 ID ET S I + + G+ Y I A + D P +L ++ Sbjct: 338 SIDTETTSLIPMQAQLVGISLCCEPGVAAY------IPVAHHYQDVPQQL----SRELVL 387 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG 113 + +K LE+ V N ++ + N + + + +L + Sbjct: 388 EKMKPWLEDASKAKVGQNLKYDSHI---FANHGVNLRGIVHDTLLESYVFESHRSHDMDS 444 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ ++K +E+ C + + EY D +T ++ + Sbjct: 445 LALRHLNRKTITFQEV----CGKGASQIG------FEQVEIGRATEYAAEDADITLQLHQ 494 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R+ P E + Q I G +D L + + +++Q Sbjct: 495 RMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNELGKRMLEIEQNA 554 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278 L + +++ F + L + + +T + VL + P + Sbjct: 555 YELA-EQPFNLNSPKQIGEIFFEKLKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKVLLE 613 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R G S+ P P R H Sbjct: 614 YR-------------------------------GLSKLKSTYTDKLPKMIDPTTGRVHTN 642 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + ++DP+ I +R IA+ G +V AD + IE R++A ++ Sbjct: 643 YAQAVAVTGRLASNDPNLQNIPIRNAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHIS 702 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L+AF GED++ T A F V V +QR KV+ L Y A +A Sbjct: 703 GDENMLQAFADGEDIHRATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMSAF---GLAG 759 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + ++ + R+M E E Sbjct: 760 NLGIERSAAQSYIE-----RYFHRFAGVKRYMDETRLE---------------------- 792 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572 + + + R+ L LP S R Sbjct: 793 ---------------AKARGYVQTVFGRR-----------------LWLPEINSPNGPRR 820 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVL 626 G R+ +N Q + D++ M+ K +++ Sbjct: 821 QGAERAAINAPM------------------QGTAADLIKLAMIAVQGWLETEKLQSKMIM 862 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLM 651 VHDE+V E P+T+ L LM Sbjct: 863 QVHDELVLEVPETELPLVREKLPELM 888 >gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 96/599 (16%), Positives = 190/599 (31%), Gaps = 94/599 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFD------------DHPVELWDCVHDPVMPQVLKEALE 62 D G+ + + F++ D P D V ++L L Sbjct: 316 DTETTGLDPMQASLVGMSFSYEADRAFYAPLTHDYLGAP----DQVGVEKALEILGPVLS 371 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSS 120 N ++ + N ++ VL + ++A P + A++L Sbjct: 372 NPEIKKIGQNIKYDWIVLARH---GADLQGVAFDTMVASYLLNPSHRSHGLDQIAMELLE 428 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 +M +E+ + K T + Y D VT +I+ L+P Sbjct: 429 HRMISYEEVCGKGAKAITFNQV----------PLEKAVPYACEDADVTFQIYGLLQPKLE 478 Query: 181 K----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K E L + + G VD L++ ++E+ L G Sbjct: 479 KNQLLELFKTVEMPLVRVLVKMEMEGITVDSDQLQALSKEFQGGMESAEKEIYQLA-GEE 537 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL ++ T+ T +VL++ + R Sbjct: 538 FNIASPQQLGHILFEKLGLPVQKKTKKKTGYSTDVKVLTTLASQHELPALILRYR----- 592 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ P R H +Q +T Sbjct: 593 --------------------------SVAKLKSTYVDALQSLIHPETGRVHTSFNQNVTA 626 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ I +R I +G ++ AD + IE R+LA ++ +++ ++ Sbjct: 627 TGRLSSSNPNLQNIPIRTPEGKRIREAFIPRKGWEMFCADYSQIELRILAHLSQDEFLIE 686 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F++GED++ T + F + P VT + R K + + Y GA ++++ G++ Sbjct: 687 LFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAINFGIIYGMGAF---RLSNEIGVSRK 743 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 T + + E A E T R + +++ L Sbjct: 744 TAQRYIDNYFV------TYKGVKKFIEETIALAHETGMTKTLLGRTRP-LPDINAKNRVL 796 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRS 578 + T G A K + + +++N ++L LV+ Sbjct: 797 MEAAERIATNTPIQGTAADLIKVAMIKVQNALEEQNMQTKMLLTVHDELVFESPPEEIF 855 >gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 384 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 146/368 (39%), Positives = 185/368 (50%), Gaps = 55/368 (14%) Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----------- 403 D + + S +RSC+IA KKLVVADL+ IE RVLAW+AGE KL AF Sbjct: 24 DVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGT 83 Query: 404 -----------------------------TGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 G+D+Y YA SF +AP VTK+QR IGKV Sbjct: 84 WHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKV 143 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN-HPEHA 493 ELALGY GG AF A+ ++L A + P ++A +W + N P Sbjct: 144 QELALGYGGGVGAFAAFAAMYHIDLEAMAE--QAALPPLLLQEAVEALQWTKANQRPTFG 201 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + D AC+ K+AWR H ++ W L A I + + + M+ Sbjct: 202 LSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQY 255 Query: 554 DKNNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSR 607 + L + LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSR Sbjct: 256 SRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSR 315 Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG Sbjct: 316 DVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 375 Query: 668 YESKRYRK 675 +++ RYRK Sbjct: 376 FQTHRYRK 383 >gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] Length = 1047 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 118/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115 LK LE+ V N ++ +VL I + + T++++ A Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPFDDTMLISYVLDAGKGGHGMDELA 577 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174 + + ++ RNK R A Y D VT +++ Sbjct: 578 RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 626 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++P E L + + G +D + L+ +L++E++ Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G +++ LF + GL T + ++ + QA + Sbjct: 687 DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L + S+ +R H T Sbjct: 742 ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A EGKKL+ AD + IE R+LA +A Sbjct: 780 TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE G D++ T + F VA Q+T D R K + + Y A +A G+ Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + +K E + ++ + K++ R+K V+ Sbjct: 897 EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L+ + Y + NN PS R+ V R Sbjct: 933 LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N + G + I +A++R E + A K ++L VHDE+V E PD Sbjct: 959 INAPIQ---------GTAADIIRRAMTR---MEDALEAKKLTARMLLQVHDELVFEVPDD 1006 Query: 640 D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + E ++ +M P+ A L PL E Sbjct: 1007 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037 >gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7] Length = 921 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 97/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62 D ET ID K G+ + +F ++ + + + AL+ Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 402 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 N + N F+ VL+ ++ + + ++A P A Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + +ELI + L RN P EY D VT ++ P K Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADVTLKLKNYFAPELKK 510 Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L Y+ + G +D + + KL+QE+ L G Sbjct: 511 EGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GTEF 569 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF L T+T T + VL + P ++ Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLE-------- 621 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + G + P P+ + H +Q +T Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658 Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I + +R I AD + IE R++A ++G+ ++ Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIE 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++G D++ T A+ + + +VT D R K + Y +A G+ + Sbjct: 719 AFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L+ + + E + A E ++ T +R K+ +S + + Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLPDINSHNAVV 828 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 + G A K V + +++ ++L L + Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 885 >gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1] gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1] Length = 1047 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 118/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115 LK LE+ V N ++ +VL I + + T++++ A Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPFDDTMLISYVLDAGKGGHGMDELA 577 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174 + + ++ RNK R A Y D VT +++ Sbjct: 578 RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 626 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++P E L + + G +D + L+ +L++E++ Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G +++ LF + GL T + ++ + QA + Sbjct: 687 DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L + S+ +R H T Sbjct: 742 ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A EGKKL+ AD + IE R+LA +A Sbjct: 780 TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE G D++ T + F VA Q+T D R K + + Y A +A G+ Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + +K E + ++ + K++ R+K V+ Sbjct: 897 EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L+ + Y + NN PS R+ V R Sbjct: 933 LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N + G + I +A++R E + A K ++L VHDE+V E PD Sbjct: 959 INAPIQ---------GTAADIIRRAMTR---MEDALEAKKLTARMLLQVHDELVFEVPDD 1006 Query: 640 D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + E ++ +M P+ A L PL E Sbjct: 1007 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037 >gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T] gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6] Length = 605 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 105/619 (16%), Positives = 197/619 (31%), Gaps = 98/619 (15%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 81 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 138 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y D VT ++ + Sbjct: 139 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 188 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 249 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE- 306 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G ++ P P+ R H Sbjct: 307 ------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHTSY 336 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 337 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 453 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 454 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 506 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573 S +A G A KR + + +++ ++ + +++ LV+ Sbjct: 507 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 566 Query: 574 GNNRSYLNTTTRQLTREYT 592 ++ + QL T Sbjct: 567 KDDVDAVAKQIHQLMENCT 585 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 Q + DI+ M + A + +++ VHDE+V E D + A ++ LM Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 582 >gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4] gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1047 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 117/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115 LK LE+ V N ++ +VL I + + T++++ A Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPFDDTMLISYVLDAGKGGHGMDELA 577 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174 + + ++ RNK R A Y D VT +++ Sbjct: 578 RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 626 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++P E L + + G +D + L+ +L++E++ Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G +++ LF + GL T + ++ + QA + Sbjct: 687 DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L + S+ +R H T Sbjct: 742 ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A EGKKL+ AD + IE R+LA +A Sbjct: 780 TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE G D++ T + F VA Q+T D R K + + Y A +A G+ Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + +K E + ++ + K++ R+K V+ Sbjct: 897 EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L+ + Y + NN PS R+ V R Sbjct: 933 LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N + G + I +A++R E + A + ++L VHDE+V E PD Sbjct: 959 INAPIQ---------GTAADIIRRAMTR---MEDALEAKRLTARMLLQVHDELVFEVPDD 1006 Query: 640 D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + E ++ +M P+ A L PL E Sbjct: 1007 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037 >gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1052 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 117/631 (18%), Positives = 205/631 (32%), Gaps = 134/631 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115 LK LE+ V N ++ +VL I + + T++++ A Sbjct: 526 LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPFDDTMLISYVLDAGKGGHGMDELA 582 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174 + + ++ RNK R A Y D VT +++ Sbjct: 583 RRHLGHQPITFADVA-----------GTGRNKVTFDRVAIDKATAYAAEDADVTLRLWRM 631 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++P E L + + G +D + L+ +L++E++ Sbjct: 632 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 691 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G +++ LF + GL T + ++ + QA + Sbjct: 692 DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 746 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L + S+ +R H T Sbjct: 747 ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 784 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A EGKKL+ AD + IE R+LA +A Sbjct: 785 TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 844 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE G D++ T + F VA Q+T D R K + + Y A +A G+ Sbjct: 845 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 901 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + +K E + ++ + K++ R+K V+ Sbjct: 902 EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 937 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L+ + Y + NN PS R+ V R Sbjct: 938 LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 963 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N + G + I +A++R E + A + ++L VHDE+V E PD Sbjct: 964 INAPIQ---------GTAADIIRRAMTR---MEDALEAKRLTARMLLQVHDELVFEVPDD 1011 Query: 640 D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + E ++ +M P+ A L PL E Sbjct: 1012 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1042 >gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010] gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010] Length = 894 Score = 283 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 107/589 (18%), Positives = 201/589 (34%), Gaps = 89/589 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ---------VLKEALENT 64 D + Y E ++ +F HD P P LK LE+ Sbjct: 320 DTETTSLD-YLE-ARIVGVSFAVKAGEAAYLPLNHDYPGAPDQLDFDAVMADLKPLLEDP 377 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPS-ALKAVGEALKLSSQK 122 V N ++R VL N DI + T++ + + A K + Sbjct: 378 TKLKVGQNLKYDRHVL---LNHDINLQGIAHDTMLESYVLDSTATRHDMDSLAKKYLDRD 434 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 +++ + K T + Y D +T ++ + L P Sbjct: 435 TIHFEDIAGKGKKQLTFNQI----------GLEEAAPYAAEDADITLQLHETLWPRIQAI 484 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 S E L + T+ G +D+ + + + + + +L+++ + G Sbjct: 485 PSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIAELEKQAHE-SAGQTF 543 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ L+ + L ++ T T + VL + Q+ Sbjct: 544 NLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEEVLQGLADDGYELPQI----------- 592 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +Q+ G S+ P Q R H Q +T Sbjct: 593 -------------------IMQYRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAVTATG 633 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R +AS G L+ AD + IE R++A ++G++ LKAF Sbjct: 634 RLSSSDPNLQNIPIRSENGRRIREAFVASNGYTLLAADYSQIELRIMAHLSGDESLLKAF 693 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ T + F++A V+ DQR K + L Y A ++ G+ + Sbjct: 694 AAGEDIHRHTASEIFDIALEDVSSDQRRSAKAINFGLIYGMSA---HGLSKQLGIERHQA 750 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A ++T + D R +N E A E ++ T R + + +S Sbjct: 751 ADYMQT------YFDRYPGVRQYMDNTREQAKEQGYVETIFGR-RLYLPEINSSNGMRRQ 803 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 + G A KR + + ++ + + +++ LV+ Sbjct: 804 YAERTAINAPMQGSAADIIKRAMIAIHSWLSEADTGIRMIMQVHDELVF 852 >gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 896 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 114/686 (16%), Positives = 214/686 (31%), Gaps = 164/686 (23%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--------ALENTD 65 ID + ++ + ++ H Q++KE LEN Sbjct: 325 IDTETTNLD--VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKPILENPA 382 Query: 66 VTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 + + N ++ +VLK D + ++ R + ALK +G Sbjct: 383 IGKIGQNIKYDYSVLKNYGITLKGIGYDTMLESYVLNSGAGRHDMDSLALKYLG------ 436 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +++ + K + + G Y D +T + +L P+ Sbjct: 437 -YKTISYEDVAGKGAKQLRFDQIPV----------VKAGIYAAEDADITLRLHHKLYPML 485 Query: 180 SK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E L + + G +D + + + L+QE L G Sbjct: 486 DESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA-GKA 544 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L+ LF E L + T T S + F+ R+ A Sbjct: 545 FNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELA-----FDYRLPA------- 592 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L++ S+ P + P+ R H +Q + Sbjct: 593 ---------------VILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLS 637 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +SDP+ I +R+ IA EG ++ AD + IE R++A ++ + L+AF G Sbjct: 638 SSDPNLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANG 697 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T + F V+K+QR K + L Y A +A G+ Sbjct: 698 WDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER------ 748 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 +DA+++ +P ++ + Sbjct: 749 ----------QDAQHYIDTYFRRYP----------------------------KVLEYME 770 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + +Q + G RR L LP +R Sbjct: 771 RTRKQAHQLGYVETLFGRR---------------LYLP-----------------EINSR 798 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET-P 637 L R+ +Q + DI+ + M+ +++ VHDE+V E Sbjct: 799 NLMRQKAAERTAINGPMQGTAADIIKKTMLAISSWEHSQKNPSAKMIMQVHDELVFEVRK 858 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPL 663 + E ++++ LM +PL Sbjct: 859 EAVEECRAIIHKLMEQTVK--LSVPL 882 >gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400] Length = 891 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 110/692 (15%), Positives = 211/692 (30%), Gaps = 156/692 (22%) Query: 5 FIDFETRSPIDLTKCGICKYAE----DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 +D ET S L + + C I +D P +L D ++ + L+ Sbjct: 315 SVDLETTSLNPLEADIVGISLSFRDHEACYIPVGHAYDGAPAQL-DRT---LVLEGLRPL 370 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L + V V N ++ VL+ I + C ++A P S A++ Sbjct: 371 LTDPAVRKVGQNLKYDYQVLRRH---GIVMAGVWCDTMVASYLINPVRSGHGLDSLAVEH 427 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 +M +E+ + R Y D + + P Sbjct: 428 LDHRMISYEEVAGKGKDQ----------LNFARVPVEKASTYSCEDADAAWLLHRLFLPR 477 Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++ E L + + G +D+AL L+ + + T L++++ +L Sbjct: 478 VAEAGMERLFFDLEMPLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQVMALA-P 536 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF + L T+T + ++L ++ Sbjct: 537 EPFNLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAA-------- 588 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L++ G ++ P P R H +Q +T+ Sbjct: 589 -------------------AILRYRGLAKLKSTYTDALPRLVHPASGRVHTSYNQTVTNT 629 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R IA EG ++ AD + IE RVLA ++ ++ A Sbjct: 630 GRLSSSEPNLQNIPVRTDEGRKIRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDA 689 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F ED++ T A F + P VT + R K + + Y GA + A G+ Sbjct: 690 FARDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSL---AKQLGIT--- 743 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + +H Sbjct: 744 --------------------------------------TKVAKEFIDNYFARHPGARAFL 765 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + ++ R+ +P+ + N+ R+ +N Sbjct: 766 DGCVAEA-EARGYVTTLMGRR---LPIPDIASSNGNIRAF-------------AQRNAVN 808 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 +Q + DI+ M+ +++ VHDE+V E Sbjct: 809 YP------------------IQGSAADIIKAAMVRVTERMRREGLTSRLIMQVHDELVFE 850 Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 P+ + L M +PL+A+ Sbjct: 851 VPEGERTAMERLVQHEMEHAAP--LRVPLRAD 880 >gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3] gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3] Length = 921 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 96/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62 D ET ID K G+ + +F ++ + + + AL+ Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEVAKVVERFSPALQ 402 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 N + N F+ VL+ ++ + + ++A P A Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + +ELI + L RN P EY D +T ++ P K Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADITLKLKNYFAPELKK 510 Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L Y+ + G +D + + KL+QE+ L G Sbjct: 511 EGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GTEF 569 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF L T+T T + VL + P ++ Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLE-------- 621 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + G + P P+ + H +Q +T Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658 Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I + +R I AD + IE R++A ++G+ ++ Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIE 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++G D++ T A+ + + +VT D R K + Y +A G+ + Sbjct: 719 AFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L+ + + E + A E ++ T +R K+ +S + + Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLPDINSHNAVV 828 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 + G A K V + +++ ++L L + Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 885 >gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3] gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3] Length = 922 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 96/540 (17%), Positives = 176/540 (32%), Gaps = 79/540 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + L+ LE+ + V N ++ +VL N I + + +L N + S Sbjct: 396 EKLRPLLEDAKIKKVGQNLKYDISVLA---NAGIKLQGVVFDTMLESYVFNSIASRHDMD 452 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G ALK K +++ + K T + Y D +T + Sbjct: 453 GLALKYLGHKNIAFEDIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLH 502 Query: 173 KRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P KE EL + I +G +D L + + + +L+ + Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + G + ++L+ F + G + T T + VL P + Sbjct: 563 AYDIA-GEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVIL 621 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R ++ P + R H Sbjct: 622 EHRSL-------------------------------TKLKSTYTDKLPLMVNAKTGRVHT 650 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +S+P+ I +R IA +G+K++ AD + IE R++A + Sbjct: 651 SYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHL 710 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + LKAF G+D++ T A F VT +QR K + L Y A +A Sbjct: 711 SQDAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAF---GLA 767 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + N + T + R+M+E A E ++ T R + + Sbjct: 768 RQLDIPRNEAQTYIDT-----YFARYPGVLRYMEETRA-SAAELGYVSTLFGR-RLYLPE 820 Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + +A G A II + + + + +++ LV+ Sbjct: 821 IRDRNAMRRQAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVF 880 >gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus influenzae 10810] Length = 935 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 89/550 (16%), Positives = 177/550 (32%), Gaps = 74/550 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 414 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 471 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + EY D VT ++ Sbjct: 472 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 521 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 522 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 581 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 582 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 639 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 640 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 669 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 670 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 729 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 730 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 786 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + F ++E + G +S Sbjct: 787 ISRPDAQKYMD--LYFQRYPSVQQFMTDIREKAKTQGYVETLFGRRL-----YLPDINSS 839 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A KR + L + N+ +++ LV+ Sbjct: 840 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIHHDPNIEMIMQVHDELVFEVRSEK 899 Query: 577 RSYLNTTTRQ 586 ++ +Q Sbjct: 900 VAFFREQIKQ 909 >gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25] gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25] Length = 929 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 103/579 (17%), Positives = 180/579 (31%), Gaps = 90/579 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEALENT 64 D GI A+ ++ +F H H + + LK LE+ Sbjct: 347 DTETTGID--AQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRDTVLLALKPLLEDP 404 Query: 65 DVTIVAHNSYFERTVLKAC-----FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 V ++ F+ +L C I + +L N + A K Sbjct: 405 TKLKVGQHAKFDMNILANCAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDSLAKK 464 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175 +++ + K T + + A G Y D VT + + L Sbjct: 465 YLDYDTVAFQDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQALFA 514 Query: 176 ---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L+ E L + I +G VD L + + + +L+++ + Sbjct: 515 QLSAIPSLASVLTDIEIPLVPVLARIERQGALVDKDLLGIQSIELGNKMVELERQAFEIA 574 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L L+ + GL + T T + VL+ + +V Sbjct: 575 -GEEFNLGSPKQLGAILYEKLGLPVLKKTGKGQASTAEEVLAKLAEDDYPLPKVL----- 628 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 +Q+ S+ P Q PR R H Q Sbjct: 629 -------------------------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 663 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + +SDP+ I +R IA +G K++ AD + IE R++A ++ ++ Sbjct: 664 VAATGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPKGYKMLAADYSQIELRIMAHLSKDEG 723 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF D++ T A F V VT DQR K + L Y GA QK+ G+ Sbjct: 724 LMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGA---QKLGKDIGV 780 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + T + A + + + + + F G HS Sbjct: 781 DTKTAKAYIDVYFAR--YPGVREYMERTRAQASDQGYVETFFGRRL-----YLPDIHSNK 833 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + G A K+ V + D Sbjct: 834 PQERAAAERTAINAPMQGTAADIIKKAMVLVDNWLTDSG 872 >gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC 35316] gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316] Length = 930 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 93/552 (16%), Positives = 176/552 (31%), Gaps = 83/552 (15%) Query: 47 CVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 +P+ +K LE+ V N F+R +L+ N I + +L Sbjct: 392 LDAPDQIPRDRVLELMKPVLEDDKALKVGQNLKFDRGILQ---NYGIELRGIAFDTMLES 448 Query: 102 S--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + + + K +E+ + T + A G Sbjct: 449 YILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGR 498 Query: 160 YCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLN 208 Y D VT ++ ++ P K E L + I G +D + H + Sbjct: 499 YAAEDADVTLQLHLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDPTVLHNHS 558 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS 264 + T+L+Q+ L G + ++L+T LF + G+ T +T + VL Sbjct: 559 GELAQRLTELEQKAHELA-GEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLE 617 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 P + Q+ G ++ Sbjct: 618 ELALDYPLPKVIL-------------------------------QYRGLAKLKSTYTDKL 646 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379 P P+ R H Q + ++DP+ I +R IA + +V A Sbjct: 647 PLMINPKTGRVHTSYHQAVAATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSA 706 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R++A ++ ++ L AF G+D++ T A F + VT +QR K + L Sbjct: 707 DYSQIELRIMAHLSRDKGLLTAFAEGQDIHRATAAEVFGLPLESVTNEQRRSAKAINFGL 766 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A ++ + + E + + + E + Sbjct: 767 IYGMSAF---GLSRQLNIPRKESQKYMD--LYFERYPGVLEYMERTRAQAKEKGYVETLD 821 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNL 558 G S + +A G A KR + + +++K+K + Sbjct: 822 GRRL-----YLPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLEKEKPRV 876 Query: 559 ILMLPSGRSLVY 570 +++ LV+ Sbjct: 877 KMIMQVHDELVF 888 >gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015] gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015] Length = 900 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 112/677 (16%), Positives = 197/677 (29%), Gaps = 158/677 (23%) Query: 8 FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--------- 57 FE S D + Y ++ +F + + HD P P+ L Sbjct: 320 FELFS-FDTETTSLN-YM-QAEIVGVSFAVEYNKAAYVPLGHDYPGAPEQLDRDAVLNAL 376 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEA 115 K LE+T V + +++ VL I + +LA N + A Sbjct: 377 KPLLEDTGKAKVGQHLKYDKNVLARY---GIELKGIAHDTMLASYVLNSVAGRHDMDSLA 433 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +++ + K T + Y D +T ++ + L Sbjct: 434 ERYLDRHTVHYEDIAGKGAKQLTFNQI----------DLEQAAPYAAEDADITLQLHREL 483 Query: 176 EPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P E L + Q I G VD + +Q + + ++ + Sbjct: 484 WPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEGMRQAEEAAHN 543 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L+ LF + GL + T + Sbjct: 544 EA-GESFNLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGHPLPQW---- 598 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L++ S+ P + R H Q + Sbjct: 599 ----------------------ILRYRALSKLKSTYTDKLPQLIDSKTGRVHTSYHQAVA 636 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A G K++ AD + IE R++A ++G++ + Sbjct: 637 ATGRLSSSDPNLQNIPIRSEEGRRIREAFVAEPGHKILAADYSQIELRIMAHLSGDETLI 696 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G D++ T + F V +V +QR K + L Y A +A G++ Sbjct: 697 RAFKEGRDIHQATASEVFGVPLDEVESEQRRRAKAVNFGLIYGMSAF---GLAKQLGISR 753 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 V T R Sbjct: 754 GEAQGYVDTYF--------------------------------------------ERYPG 769 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRS 578 + + + + EQ E G RR L LP +S R R+ Sbjct: 770 VRDYMERTREQAREQGYVETEFGRR---------------LYLPEIQSRNVPRRQHAERT 814 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEI 632 +N Q + DI+ M+ A +V+ VHDE+ Sbjct: 815 AINAPM------------------QGTAADIIKRAMIAIHDALEKELPDVRMVMQVHDEL 856 Query: 633 VCETPDTDEFNASMLYH 649 V E P+ L Sbjct: 857 VFEVPEDQAKQTQALVE 873 >gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 677 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F D+ HD + + LK LE+ V N ++ +VL Sbjct: 120 SFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY 179 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 I + +LA N + AL+ +++ + T Sbjct: 180 ---GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 236 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-------EPL----SSKEQELWYLDQ 190 + Y D VT + RL E L E L + Sbjct: 237 I----------ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLS 286 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G +D + + +L+Q+ + + ++L+ LF + GL Sbjct: 287 RIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIA-EQEFNMNSPKQLQAILFEKMGLP 345 Query: 251 L----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T +T + VL P + R Sbjct: 346 VVKKTPSGTPSTNEEVLQELALDYPLPKLILEYR-------------------------- 379 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 G ++ P P R H Q +T ++DP+ I Sbjct: 380 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 434 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V+ Sbjct: 435 RRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI 494 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 QV+ +QR K + L Y A +A G+ + + +E Sbjct: 495 DQVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMD-----KYFERYPGV 546 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++M E+ A + ++ T R + + SR +A G A Sbjct: 547 MQYM-EDTRSAAADKGYVETIFGR-RLHLPEIKSRNGMRRKAAERAAINAPMQGTAADII 604 Query: 542 KRRDVPLVYMKKDKNNLILML--PSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K+ + + +++ N + L LV+ ++ S + + ++L Sbjct: 605 KKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAAE 658 >gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T] Length = 714 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 152/709 (21%), Positives = 228/709 (32%), Gaps = 172/709 (24%) Query: 5 FIDFETRSP---------------------IDLTKCGICKYAEDVCVILFAFGFD--DHP 41 DFET S + G YAE + +D D Sbjct: 36 SFDFETYSEAGFVINPETGKVHTAAKTGNKNGIALVGTPVYAEHPSTEILCLYYDLKDGK 95 Query: 42 VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICT 96 P P L E + N A N FE + + + + C Sbjct: 96 GRRAYIPGGPK-PTDLIEHIANGGPIA-AWNITFEFWIWNMVLAKREGWPWLQLEQCYCD 153 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHREA 153 + AR LP +L A +ALK +S K ++GK+LI + C+ L + Sbjct: 154 MAKARRFSLPGSLDAAAQALK-TSPKDKKGKQLINKLCRPVSATKARPLPRWTLYTAPQD 212 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 + YC DV + ++ E+E W DQ IN RG VDV IVD Sbjct: 213 YSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLDNALDIVDQ 272 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 + EL ++T G V S + K+ +L G + +LT + L + L P A Sbjct: 273 TTRRFTMELAAITNGAVGSVSEVAKMTDFL-AGLGCRMHNLTADSVSEALERD-DLNPTA 330 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V R + + V KL +L ++SDGRLR F GA TGRWS QNL Sbjct: 331 RRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGA-GTGRWSAGGVQLQNLTSKG 389 Query: 334 RSHEELDQIITHLPTSITSD---------------------------------------- 353 + + + + T + Sbjct: 390 PKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALKDLTHRNLD 449 Query: 354 ------PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 DP+ ++S C+R IA+ GKK V D + IEA VLA +A +W+L+ F T Sbjct: 450 LIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRTHGK 509 Query: 408 LYVTTYARSFNVAPAQVT----------KDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +Y + ++ V ++ ++++GKV ELA GY G A++ + Sbjct: 510 IYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWKAFGAEAHF 569 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + ++ WR + Sbjct: 570 ADDD----------------------------------------EMKKAILGWRDASPEI 589 Query: 518 SELWN-----------------ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 E W L A I N K V + + L Sbjct: 590 VEFWGGQYRRDPFTRKWTKEYFGLEGAAIMAILNP-----GKCYAVHDITYAVHDDVLYC 644 Query: 561 MLPSGRSLVYRDVGN-----------NRSYLNTTTR------QLTREYT 592 LPSGR L Y +++ T R T Sbjct: 645 RLPSGRFLQYHQPRLVESDSWKGPEYQITFMGYNTNSQKGPVGWVRMDT 693 >gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 1047 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 117/631 (18%), Positives = 204/631 (32%), Gaps = 134/631 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115 LK LE+ V N ++ +VL I + + T++++ A Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPFDDTMLISYVLDAGKGGHGMDELA 577 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKR 174 + + ++ RNK A Y D VT +++ Sbjct: 578 RRHLGHQPITFADVA-----------GTGRNKVTFDHVAIDKATAYAAEDADVTLRLWRM 626 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++P E L + + G +D + L+ +L++E++ Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G +++ LF + GL T + ++ + QA + Sbjct: 687 DA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQAGHDLPKK---- 741 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L + S+ +R H T Sbjct: 742 ----------------------ILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A EGKKL+ AD + IE R+LA +A Sbjct: 780 TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AFE G D++ T + F VA Q+T D R K + + Y A +A G+ Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGR 896 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + +K E + ++ + K++ R+K V+ Sbjct: 897 EEASAFIK--QYFERFPGIRDYI---------------------DTTKRSCREK-GYVTT 932 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L+ + Y + NN PS R+ V R Sbjct: 933 LFGRVCH-----------------------YPQIRSNN-----PSERASV------ERQA 958 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N + G + I +A++R E + A K ++L VHDE+V E PD Sbjct: 959 INAPIQ---------GTAADIIRRAMTR---MEDALEAKKLTARMLLQVHDELVFEVPDD 1006 Query: 640 D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + E ++ +M P+ A L PL E Sbjct: 1007 EVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037 >gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp] gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp] Length = 931 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 107/599 (17%), Positives = 195/599 (32%), Gaps = 95/599 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL----- 57 + D ET + ID A+ ++ +F H + +PQ L Sbjct: 352 IAFDSET-TSID---------AQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQLDRDAV 401 Query: 58 ----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 K LE+ V ++ ++ VL + I + +L + + Sbjct: 402 LKALKPILEDPAKAKVGQHAKYDINVLANA-STPIAVQGVAFDTMLESYVLDSTATRHDM 460 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169 ALK +++ R K T + + A G Y D VT Sbjct: 461 DSLALKYLGHSTIRFEDIAGRGAKQLTFDQI----------ALEQAGPYAAEDADVTLRL 510 Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 E++ RLE + E L + I G VD L + + + +L++ Sbjct: 511 HQELWGRLEAVPSLAKVLREIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELER 570 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + G + ++L L+ + G + T T + VL+ + + +V Sbjct: 571 KAFEIA-GEEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDFELPKV 629 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +Q+ S+ P Q PR R H Sbjct: 630 L------------------------------MQYRSLSKLKSTYTDKLPEQINPRTGRIH 659 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q + +SDP+ I +R +A +G K++ AD + IE R++A Sbjct: 660 TSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKMMAADYSQIELRIMAH 719 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A ++ L AF D++ T A F VA +VT DQR K + L Y A + Sbjct: 720 LAKDEGLLDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSAF---GL 776 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A + + A + ++ + E + G Sbjct: 777 AKQIDVERKEAQAYIDRYFAR--YPGVLSYMERTRAQAAEQGYVETVFGRRL-----YLP 829 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLV 569 + H++ + +A G A KR + + +++ + ++L LV Sbjct: 830 EIHAQNQAMRKGAERAAINAPMQGTAADIIKRAMIAVDDWLQGSGIDARIILQVHDELV 888 >gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B] gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B] Length = 921 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 96/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62 D ET ID K G+ + +F ++ + + + AL+ Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 402 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 N + N F+ VL+ ++ + + ++A P A Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + +ELI + L RN P EY D +T ++ P K Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADITLKLKNYFAPELKK 510 Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L Y+ + G +D + + KL+QE+ L G Sbjct: 511 EGLESLFTTIEMPLIYVLAEMEATGVTLDTVALRQSSGELTASMNKLEQEVYELA-GTEF 569 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF L T+T T + VL + P ++ Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLE-------- 621 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + G + P P+ + H +Q +T Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658 Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I + +R I AD + IE R++A ++G+ ++ Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIE 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++G D++ T A+ + + +VT D R K + Y +A G+ + Sbjct: 719 AFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L+ + + E + A E ++ T +R K+ +S + + Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLPDINSHNAVV 828 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 + G A K V + +++ ++L L + Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 885 >gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114] gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Vibrio fischeri ES114] Length = 932 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 111/676 (16%), Positives = 214/676 (31%), Gaps = 167/676 (24%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F ++ HD + + LK LE+ + V N ++ +VL Sbjct: 375 SFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKVGQNLKYDASVLARY 434 Query: 84 FNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 DI + +L N + AL+ +E+ + K T Sbjct: 435 ---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQ 491 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIF----------KRLEPL-SSKEQELWYLDQ 190 + A Y D +T + ++L+ + + E L + Sbjct: 492 I----------ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLS 541 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + +G +D L + + +L++ + G + ++L+T LF + L Sbjct: 542 RMERKGVYIDDMLLSAQSVEIGQRLDELEKAAFEVA-GEEFNMNSPKQLQTILFEKMELP 600 Query: 251 LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T + T + VL P + R Sbjct: 601 VIKKTPSGAASTNEEVLQELALDYPLPKLILEYR-------------------------- 634 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 G ++ P P R H Q +T ++DP+ I Sbjct: 635 -----GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R +A G K++ D + IE R++A ++ ++ L AF G+D++ T A V+ Sbjct: 690 RRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSI 749 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT + R K + L Y A +A G+ +A+++ Sbjct: 750 EEVTSEDRRRAKAINFGLIYGMSAF---GLAKQIGIPRG----------------EAQDY 790 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 E +P Q +E + ++A Sbjct: 791 MNVYFERYP------------------------------------GVMQYMEETR-LLAT 813 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 ++ V +Y GR L ++ N R+ + R+ Sbjct: 814 EQGYVETLY--------------GRRLHLPEI-NARNGM-------RRKAAERA-AINAP 850 Query: 602 VQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTS 653 +Q + DI+ + M+ K ++++ VHDE+V E + + + + LM Sbjct: 851 MQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQ 910 Query: 654 NPSWAKGLPLKAE-GY 668 +PL AE G+ Sbjct: 911 AAQ--LDVPLVAEAGF 924 >gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703] Length = 612 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 178/697 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFD------------DHPVEL---WDCVHDPVMPQVLKE 59 D G+ + ++ + FA D P +L W LK Sbjct: 38 DTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQ-------LKP 90 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALK 117 LE+ V N F++++L I + +L + + A + Sbjct: 91 LLEDDKALKVGQNLKFDQSMLARY---GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 147 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + K +E+ + T + A G Y D VT ++ L P Sbjct: 148 YLNHKTITFEEIAGKGKNQLTFNQI----------ALEQAGPYAAEDADVTLQLHLVLWP 197 Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D + ++ + + +L+++ L Sbjct: 198 KLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILVAHSKELTIRLDELEKQAHELA 257 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 258 -EEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYR-- 314 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G ++ P P R H Q Sbjct: 315 -----------------------------GLAKLKSTYTDKLPLMINPVSGRVHTSYHQA 345 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T + DP+ I +R IA EG +++ AD + IE R++A ++ ++ Sbjct: 346 VTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKG 405 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F ++ +VT +QR K + L Y A +A + Sbjct: 406 LLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAF---GLARQLNI 462 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + R Sbjct: 463 PRGEAQ--------------------------------------------RYMDLYFERY 478 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + +Q E G GR L D+ + Sbjct: 479 PGVLEYMERTRKQAAEQGYVTTLD-----------------------GRRLYLPDIHS-- 513 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630 N T R+ +Q + DI+ M+ +++ VHD Sbjct: 514 --RNATRRKAAEREA-----INAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHD 566 Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 E+V E ++ +A + LM + A +PLK + Sbjct: 567 ELVFEVHESVLESAEQKIRELMEQSMQLA--VPLKVD 601 >gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP] gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP] Length = 930 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 100/625 (16%), Positives = 190/625 (30%), Gaps = 151/625 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN D+ + N F+ ++ + T++L+ + A Sbjct: 409 IKPILENPDIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + + + + T + EY D VT ++ + L Sbjct: 467 RYLGHETIAFESIAGKGKNQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516 Query: 177 PLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +E L ++ + G +D + + T L+++ L Sbjct: 517 LKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQAYEL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPILQKTPKGAPSTNEEVLEELAYSHELPKILVEHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLD 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + Q++ Sbjct: 782 ISRPDAKKYM-----------------------------------------DLYFQRYPS 800 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575 V + ++ + + + + R+ L LP S R G Sbjct: 801 VQQFMTDIREKAK-AQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----DIVLTVHD 630 R +N Q + DI+ M+ + Y ++++ VHD Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKLDEVIYHDPDIEMIMQVHD 884 Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654 E+V E + EF + M Sbjct: 885 ELVFEVRSEKVEFFREQIKQQMEDA 909 >gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2] Length = 935 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 116/699 (16%), Positives = 208/699 (29%), Gaps = 178/699 (25%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 +D + Y E ++ +F + HD P P L K LE+ Sbjct: 360 VDTETTSVN-YME-AELVGVSFCIEPGAAAYVPVAHDYPDAPTQLSRDYVLSALKPILES 417 Query: 64 TDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 + V + +++ VL D + ++ R + AL +G Sbjct: 418 ETIIKVGQHIKYDKNVLAHYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLG---- 473 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIFK 173 K +E+ + K T + G Y D +T I+ Sbjct: 474 ---HKTIHFEEIAGKGAKQLTFNQI----------GLEEAGPYAAEDADITMRLHQAIWA 520 Query: 174 RLEP-------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 +LE L E + + + +G ++ +Q + +L++E+ Sbjct: 521 KLENEPKLKALLVDVEVPVACVLSRMEQQGVLIESQRLRQQSQDLATRIAELEKEVHEEA 580 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G V + ++L+ LF + L + T T + VL P ++ R Sbjct: 581 -GEVFNLGSPKQLQHILFEKMSLPVIKKTPKGAPSTSEEVLQELALEFPLPKKLMEYR-- 637 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G ++ P R R H Q Sbjct: 638 -----------------------------GLTKLKNTYTDKLPKMINHRTGRVHTSYHQA 668 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 IT ++DP+ I VR + EG K+V AD + IE R++A ++G++ Sbjct: 669 ITATGRLSSTDPNLQNIPIRNEEGRKVRQAFVPREGYKIVAADYSQIELRIMAHLSGDEG 728 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G D++ T A F V +VT +QR K + L Y A +A + Sbjct: 729 LLDAFAHGRDIHKATAAEVFGVTLDEVTTEQRRSAKAINFGLIYGMSAF---GLAKQLNI 785 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + ++ E A Sbjct: 786 PRHEAQKYMD------LYFERYPGVLEYMDSTREGAK----------------------- 816 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNN 576 + + +T+ + L LP ++ R G Sbjct: 817 -------EKGYVETVFGRR-----------------------LYLPDIKASNGARRKGAE 846 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629 R+ +N Q + DI+ M+ +++ VH Sbjct: 847 RAAINAPM------------------QGTAADIIKMAMIKVDDWITSLESDDVLMMMQVH 888 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 DE+V E + E + LM +PL + Sbjct: 889 DELVFEIREEHLEEQVKNIVSLMEQAAV--LNVPLVVDA 925 >gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR] gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR] Length = 921 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 112/646 (17%), Positives = 193/646 (29%), Gaps = 160/646 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE V N ++ +L+ I + + +LA N + S Sbjct: 393 EQLKPLLEAEKPQKVGQNLKYDSHILRRY---KIRLAGILNDTMLASYVFNSVGSRHDMD 449 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 +L + K +++ + K T + A G Y D +T + Sbjct: 450 TLSLHYLNHKTISFEDIAGKGAKQLTFNQI----------ALEQAGPYAAEDADITYRLH 499 Query: 173 KRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 L L+ E L + + G +D L +Q + + L++ Sbjct: 500 DVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRIDANLLGKQSQEIAEKLDALEK 559 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + G + ++L+ F + L + T T + VL P + Sbjct: 560 KAFEIA-GEEFNLGSPKQLQRIFFEKLELPIVKKTPKGAPSTAEEVLHELAHDYPLPDVI 618 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 Q G S+ P P R H Sbjct: 619 L-------------------------------QHRGLSKLKSTYTDKLPKMINPDTGRVH 647 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q +T ++DP+ I VR I +G K+V D + IE R++A Sbjct: 648 TSYQQAVTATGRLSSTDPNLQNIPIRTAEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAH 707 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ ++ LKAF G D++ T A F +V+ DQR K + L Y A + Sbjct: 708 LSQDESLLKAFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVNFGLIYGMSAF---GL 764 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A G+ + H Sbjct: 765 ARQLGIARHEAQHY--------------------------------------------MD 780 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-Y 570 + R + + +Q E G RR L LP ++ Sbjct: 781 KYFERFPGVLRYMEDTRKQAKEQGYVKTLFGRR---------------LPLPDIKASNGA 825 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--------KAGY 622 R G R+ +N Q + DI+ + M+ + Sbjct: 826 RRKGAERAAINAPM------------------QGTAADIIKKAMLKVADWIDSNNCQDDV 867 Query: 623 DIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEG 667 +++ VHDE+V E ++ + L +M S +PL AE Sbjct: 868 RMLMQVHDELVFEIKESKLTDYIEQLTEVMEKAAS--LDVPLIAEA 911 >gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 919 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 108/634 (17%), Positives = 202/634 (31%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN DV + N ++ T+ N + + +L + + Sbjct: 396 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVEGVAFDTMLESYTLNSTGRHNMDEL 452 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 453 ADRYLGHKTIEFEEIAGKGKNQLTLDKI----------AIDVASQYAAEDADVTMKLHQV 502 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P K E L + I G +D + ++ +L+Q + Sbjct: 503 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 562 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 563 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 621 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P + R H Q + Sbjct: 622 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 655 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA +G K+V AD + IE R++A +A ++ Sbjct: 656 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 715 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 716 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 772 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + Q++ V Sbjct: 773 RADAKKYM-----------------------------------------ERYFQRYPAVQ 791 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ + + V ++ GR L ++ ++ Sbjct: 792 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 823 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ KA +++ VHDE+V Sbjct: 824 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDDNIKMIMQVHDELV 876 Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 877 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 908 >gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 957 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 107/634 (16%), Positives = 203/634 (32%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LE+ DV + N ++ T+ N + + +L + + Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTI---FANHGVQVEGVAFDTMLESYTLNSTGRHNMDEL 490 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDIASQYAAEDADVTMKLHQV 540 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P K E L + I G +D + ++ ++L+Q + Sbjct: 541 LSPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVH 600 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P + R H Q + Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA +G K+V AD + IE R++A +A ++ Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 753 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + Q++ V Sbjct: 811 RADAKKYM-----------------------------------------ERYFQRYPAVQ 829 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ + + V ++ GR L ++ ++ Sbjct: 830 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ KA +++ VHDE+V Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDDNIKMIMQVHDELV 914 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 915 FEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIAE 946 >gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 870 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 81/471 (17%), Positives = 155/471 (32%), Gaps = 72/471 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +++ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P+ R H Sbjct: 629 E-------------------------------YRGLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + E + + + E + G Sbjct: 775 RQLNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLEGRRL 823 >gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 957 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 107/634 (16%), Positives = 202/634 (31%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN DV + N ++ T+ N + + +L + + Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASKYAAEDADVTMKLHQV 540 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E L + I G +D + ++ +L+Q + Sbjct: 541 LTPELDKTPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P + R H Q + Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA +G K+V AD + IE R++A +A ++ Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 753 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + Q++ V Sbjct: 811 RADAKKYM-----------------------------------------ERYFQRYPAVQ 829 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ + + V ++ GR L ++ ++ Sbjct: 830 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ KA +++ VHDE+V Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914 Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946 >gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1] gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1] Length = 928 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 87/538 (16%), Positives = 177/538 (32%), Gaps = 76/538 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVG 113 ++LK LE+ V N ++R +L +++ W T++ + + + Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAW-DTMLESYTLDSVAGRHDMDS 460 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K +E+ + T + G Y D VT ++ Sbjct: 461 LSERWLKHKTITFEEIAGKGKNQLTFNQI----------DLEQAGRYAAEDADVTLQLHL 510 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 ++ P K E L + I G +D + ++ + + +L+Q+ Sbjct: 511 KMWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVKIDPQVLQKHSEEITLRLAELEQKA 570 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 571 HDIA-GEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE 629 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R G ++ P P+ R H Sbjct: 630 YR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTS 658 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 659 YHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LKAF G+D++ T A F + V+ +QR K + L Y A ++ Sbjct: 719 RDKGLLKAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINFGLIYGMSAF---GLSR 775 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + E + + + E + G Sbjct: 776 QLNIPRKESQKYMD--LYFERYPGVLEYMERTRAQAKEQGYVETLEGRRL-----YLPDI 828 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 S + +A G A KR + + ++++++ + +++ LV+ Sbjct: 829 KSSNAARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQEEQPRVRMIMQVHDELVF 886 >gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4] gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4] Length = 922 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 96/540 (17%), Positives = 176/540 (32%), Gaps = 79/540 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + L+ LE+ + V N ++ +VL N I + + +L N + S Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLA---NAGIQLQGVVFDTMLESYVFNSVASRHDMD 452 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G ALK K +++ + K T + Y D +T + Sbjct: 453 GLALKYLGHKNIAFEDIAGKGAKQLTFNQI----------QLETAAPYAAEDADITLRLH 502 Query: 173 KRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P KE EL + I +G +D L + + + +L+ + Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + G + ++L+ F + G + T T + VL P + Sbjct: 563 AYDIA-GEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVIL 621 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R ++ P + R H Sbjct: 622 EHRSL-------------------------------TKLKSTYTDKLPLMVNAKTGRVHT 650 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +S+P+ I +R IA +G+K++ AD + IE R++A + Sbjct: 651 SYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHL 710 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + LKAF G+D++ T A F VT +QR K + L Y A +A Sbjct: 711 SQDAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAF---GLA 767 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + N + T + R+M+E A E ++ T R + + Sbjct: 768 RQLDIPRNEAQTYIDT-----YFARYPGVLRYMEETRA-SAAELGYVSTLFGR-RLYLPE 820 Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + +A G A II + + + + +++ LV+ Sbjct: 821 IRDRNAMRRQAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVF 880 >gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20] gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 957 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 107/634 (16%), Positives = 203/634 (32%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN DV + N ++ T+ N + + +L + + Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASKYAAEDADVTMKLHQV 540 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E L + I G +D + ++ +L+Q + Sbjct: 541 LVPELDKTPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVH 600 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P + R H Q + Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA +G K+V AD + IE R++A +A ++ Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 753 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 754 ITAFAEGKDIHCATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + Q++ V Sbjct: 811 RADAKKYM-----------------------------------------ERYFQRYPAVQ 829 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ + + V ++ GR L ++ ++ Sbjct: 830 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M++ KA +++ VHDE+V Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIDIDKAIRGDDNIKMIMQVHDELV 914 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 915 FEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIAE 946 >gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] Length = 927 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 116/699 (16%), Positives = 200/699 (28%), Gaps = 173/699 (24%) Query: 6 IDFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 +D ET S + G+ AE + + P +L +L+ L Sbjct: 353 LDTETDSLDPMRARLVGLSFAAEPGRAAYLPLGHDYPGAPAQL----GYEQALDLLRPLL 408 Query: 62 ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + V + + ++ VL+ + D + ++ AR + AL+ +G Sbjct: 409 ADPAVRKIGQHGKYDLHVLRRHGVAVAGYADDTLLESFVLDSGNARHDMDSLALRHLGYT 468 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K E R P + A Y D +T + + L Sbjct: 469 TV-----------------KYEDICGKGVRQIPFSQCALDDATRYAAEDADITLRLHRVL 511 Query: 176 EPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E +L + + I G VD+ + + + + Sbjct: 512 SARLQAEPQLQAVYRDIEMPLVQVLERIEANGVLVDMDELRRQGADLSRRMLEAQERATA 571 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L LF E L +T + L + L Sbjct: 572 LA-GRSFNLDSPKQLCALLFDELKLPALVKTPKGQPSTNEEALEAIADLHELP------- 623 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R L++ G ++ P P R H Sbjct: 624 ------------------------RIILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYH 659 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +SDP+ I +R +A G+KLV D + IE R++A ++ + Sbjct: 660 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPPGRKLVACDYSQIELRIMAHLSQD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF +G D++ T A F +VT ++R K + L Y GA +A Sbjct: 720 PGLLGAFASGADIHRATAAEVFGRPLEEVTVNERRAAKAINFGLMYGMGAF---GLARQL 776 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + R E E A E ++ T R+ H Sbjct: 777 GIDRGQAQDYIALYFSRYP------GVRDYMERTREQARERGYVETVFG------RRLHL 824 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 N +A G Sbjct: 825 EYINARNAAQRA----------------------------------------------GA 838 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629 R+ +N Q + DI+ M+ ++L VH Sbjct: 839 ERAAINAPM------------------QGTAADIIKRAMIAVDAWIADHAQRARMLLQVH 880 Query: 630 DEIVCETPDT--DEFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+V E + E S + LM++ +PL + Sbjct: 881 DELVFEADEEFVPEL-VSRVPELMSAAGD--LSVPLVVD 916 >gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] Length = 932 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 94/608 (15%), Positives = 195/608 (32%), Gaps = 92/608 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59 L +D ET S + ++ +F + ++ D + + Sbjct: 362 LSLDTETTSTDPIR----------AELVGMSFSYAENQAFYVPVPADRSEAQKIVDRFRP 411 Query: 60 ALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LK 117 EN ++ V N ++ VL L P+ + + + L + + E L Sbjct: 412 VFENREIMKVGQNIKYDMLVLANYGVQLQGPLFDTMVAHYVLQPE-LRHNMDYLAEIYLN 470 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + +EE + R+ P EY D VT ++ +LE Sbjct: 471 YQTIHIEE-------LIGPKGKNQGNMRDLPP-----ASVYEYACEDADVTLKLKNKLEK 518 Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E L + + G +D ++ + ++++E+ L Sbjct: 519 ELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTEALKETSRHFTLRMKQIEEEVYQLA- 577 Query: 228 GLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + +++ LF + T+T T + VL S + ++ +R Sbjct: 578 GTEFNIASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEVVGKILEHR-- 635 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G + P P R H +Q Sbjct: 636 -----------------------------GLKKLLGTYIDALPQLINPETGRIHTSFNQT 666 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T +S+P+ I +R I +G AD + IE R++A ++G+ Sbjct: 667 VTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPH 726 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF+ G+D++ T ++ + V +VT++QR+ K + Y +A + Sbjct: 727 MIEAFQKGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIYGISVF---GLAERLNV 783 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + L+ + + + + A E +I T +R K+ +SR Sbjct: 784 DRKEAKELIDG------YFENYPHVKEYMDESIRIARERGYIETIFKR-KRYLPDINSRN 836 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + G A K V + K++ ++L L + + Sbjct: 837 AVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFLKERIQSKMILQVHDELNFSVLPEE 896 Query: 577 RSYLNTTT 584 + + Sbjct: 897 QEKVKQIV 904 >gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19] gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19] Length = 921 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 97/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62 D ET ID K G+ + +F ++ + + + AL+ Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 402 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 N + N F+ VL+ ++ + + ++A P A Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + +ELI + L RN P EY D VT ++ P K Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADVTLKLKNYFAPELKK 510 Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L Y+ + G +D + + KL+QE+ L G Sbjct: 511 EGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GTEF 569 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF L T+T T + VL + P ++ Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLLE-------- 621 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + G + P P+ + H +Q +T Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658 Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I + +R I AD + IE R++A ++G+ ++ Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIE 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++G D++ T A+ + + +VT D R K + Y +A G+ + Sbjct: 719 AFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L+ + + E + A E ++ T +R K+ +S + + Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLPDINSHNAVV 828 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 + G A K V + +++ ++L L + Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNIYKEE 885 >gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7] gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7] Length = 922 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 96/540 (17%), Positives = 176/540 (32%), Gaps = 79/540 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + L+ LE+ + V N ++ +VL N I + + +L N + S Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLA---NAGIQLKGVVFDTMLESYVFNSVASRHDMD 452 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G ALK K +++ + K T + Y D +T + Sbjct: 453 GLALKYLGHKNIAFEDIAGKGAKQLTFNQI----------PLETAAPYAAEDADITLRLH 502 Query: 173 KRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P KE EL + I +G +D L + + + +L+ + Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + G + ++L+ F + G + T T + VL P + Sbjct: 563 AYDIA-GEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVIL 621 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R ++ P + R H Sbjct: 622 EHRSL-------------------------------TKLKSTYTDKLPLMVNAKTGRVHT 650 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +S+P+ I +R IA +G+K++ AD + IE R++A + Sbjct: 651 SYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHL 710 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + LKAF G+D++ T A F VT +QR K + L Y A +A Sbjct: 711 SQDAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAF---GLA 767 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + N + T + R+M+E A E ++ T R + + Sbjct: 768 RQLDIPRNEAQTYIDT-----YFARYPGVLRYMEETRA-SAAELGYVSTLFGR-RLYLPE 820 Query: 513 KHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + +A G A II + + + + +++ LV+ Sbjct: 821 IRDRNAMRRQAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEITMIMQVHDELVF 880 >gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 115/691 (16%), Positives = 200/691 (28%), Gaps = 167/691 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64 D G+ +I F HD P L A +E+ Sbjct: 354 DTETDGLD--TLTANLIGLCFAVKPGEAAYLPVGHDYLDAPDQLDRATVLAALKPVMEDP 411 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + + N F+R VLK DI + +L + + A + Sbjct: 412 TIGKIGQNLKFDRGVLKRY---DIELAGIAFDTMLESYVLDSVAGRHDMDSLAERFLQHT 468 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 +E+ + T + A Y D VT + ++L P + Sbjct: 469 TVSFEEIAGKGRNQLTFNQI----------AMEQAASYAAEDADVTLRLHQKLWPRIEQA 518 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + I G +D ++ + + +L+ E L Sbjct: 519 PELRRVFEEIEMPLVPVLSRIERTGVLIDESILAAHSVELAKRLEELEGEAHQLA-EEPF 577 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ L+ + L + T +T + VL+ P + R Sbjct: 578 NLSSTKQLQEILYDKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKLILEYR------- 630 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 631 ------------------------GLAKLKSTYTDKLPQMINPLSKRVHTSYHQAVTATG 666 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA +V AD + IE R++A +A + L AF Sbjct: 667 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPPDALIVAADYSQIELRIMAHLARDPGLLNAF 726 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T A F ++ +VT+DQR K + L Y A + S Sbjct: 727 AAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINFGLIYGMSAFGLARQLSV-------- 778 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 +A+ + E +P + Sbjct: 779 -----------PRSEAQKYMNLYFERYP----------------------------GVLE 799 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + Q + G RR + L+ + R G R+ +N Sbjct: 800 YMERTRRQASDRGYVETLDGRR-LYLLDIHSRNGM-------------RKKGVERAAINA 845 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 Q S DI+ M+ +++ VHDE+V E Sbjct: 846 PM------------------QGTSADIIKRAMIAIDGWLQQEAPPVRMIMQVHDELVFEV 887 Query: 637 P-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 D E + + LM + +PL+ + Sbjct: 888 QRDAVESAKARIKALMEGC--FKLDVPLQVD 916 >gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12] gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12] Length = 859 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 118/680 (17%), Positives = 221/680 (32%), Gaps = 160/680 (23%) Query: 6 IDFETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 +D ET + +D+ GI E+ F D V+ + D V +K LE Sbjct: 288 LDTET-TSLDIMAAEIVGISLAIEEKKAAYIPFIHTDGSVQ---LLRDEVF-AAIKPILE 342 Query: 63 NTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 N + + N ++ +VLK D + +I R + +LK +G Sbjct: 343 NPAIKKIGQNIKYDYSVLKNHGIHLQGLAYDTMLESYILNSNAGRHDMDTLSLKYLG--- 399 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K +++ + K + + Y D +T ++ +L Sbjct: 400 ----HKTITFEDIAGKGAKQLRFDQIPV----------DKASVYAAEDADITLQLHHKLY 445 Query: 177 PL---------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 P+ + E L + + RG +D + + L++E L Sbjct: 446 PMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEEAIQLA- 504 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G + ++L+ LF E + + T T S + F+ R+ A Sbjct: 505 GKPFNLSSPKQLQEILFNEQKIPVIAKTPTGQPSTAESVLQELA-----FDYRLAA---- 555 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 L+ G ++ P + R H +Q + Sbjct: 556 ------------------VILEHRGLTKLVSTYIDALPKKINAETGRVHTSYNQAVAATG 597 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R+ IA + ++ AD + IE R++A ++ ++ L AF Sbjct: 598 RLSSSEPNLQNIPIRNEEGRLIRTAFIAPPEQVILAADYSQIELRIMAHLSQDENLLTAF 657 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A F++A +VT +QR K + L Y A +A G+ Sbjct: 658 ANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIYGMSAF---GLAKQIGVER--- 711 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 +DA+N+ + +P ++ Sbjct: 712 -------------QDAQNYIDTYFQRYP----------------------------KVLE 730 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +++ +Q E G + GR L ++ Sbjct: 731 YMNRTRQQAHEQG-----------------------YVETLCGRRLYLPEI--------- 758 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVCE 635 TR L R+ +Q + DI+ + M+N K +++ VHDE+V E Sbjct: 759 NTRNLMRQKAAERTAINAPMQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFE 818 Query: 636 TPDTD-EFNASMLYHLMTSN 654 + E + + LM Sbjct: 819 VASQEIEASTVKIRQLMEQA 838 >gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708] gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708] Length = 982 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 116/675 (17%), Positives = 226/675 (33%), Gaps = 152/675 (22%) Query: 33 FAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 +G H ++ L+ LEN + N+ F+R + K C Sbjct: 408 CCWGTGSDEAAYIPVGHKIGHNLQLDLVVSALRPILENANYPKTFQNAKFDRLIFK-CQG 466 Query: 86 LDIPIHRWICTLVLARSNGLP--------SALKAVGEALKLSSQKMEEGKELIARFCKGE 137 +++ + +LA P +L+ +G L+L+ K K Sbjct: 467 INLV--GVVFDTMLASYLINPDTTHNLSDLSLRNLG--LQLTEYNDIVTKTGKKELQKNI 522 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-----------EPLSSKEQELW 186 + + YC V T ++ +L + L EQ L Sbjct: 523 ADIGI------------DIVAYYCGTQVYATFQLVDKLRCELNKTPDLAKLLVEVEQPLE 570 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + G ++ + L+Q ++ E KL+ + + + ++L LF + Sbjct: 571 AVLAEMEYTGVRINSSYLQELSQQLESELAKLEIQATEIAS-EKFNLDSPKQLSYILFDK 629 Query: 247 TGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 GL + +T ++ +KL +++ G + Sbjct: 630 LGLSTKYSRKIQTGYSTDAATLEKLQE--------------------------VDNTGFV 663 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 +++ +S+ P P+ R H + +Q T +S+P+ I Sbjct: 664 DAIIEYRTSSKLKSTYVDALPALVHPQSQRLHTDFNQTATSTGRLSSSNPNLQNIPIRTA 723 Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 S +R + G +V AD + IE R+LA ++ E ++A++ ED++ T F Sbjct: 724 FSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPVLVQAYKQNEDIHTVTAKLVF-- 781 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT ++R K + + Y G+ K A +TG++ +A Sbjct: 782 EKDEVTSEERRFAKTINFGVIYGMGS---LKFARSTGVD----------------KANAN 822 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG--KA 537 F R E +P +++ L + ++ I G + Sbjct: 823 EFIRRFNERYP----------------------------QVFAYLEKVKKEAISQGYVET 854 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY-LNTTTRQLTREYTYGGK 596 I+ R+R Y +L + + D+ +R L L R Sbjct: 855 ILGRRR------YFDFTSKSLK----ELKGISLEDIDLSRLKNLGAYNAGLLRSAANAP- 903 Query: 597 LTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLM 651 +Q S DI+ M+ + ++L VHDE+V E P + + +M Sbjct: 904 -----IQGSSADIIKIAMVQLHEVLRNYQARLLLQVHDELVFEVPPQEWGELQLQIKSVM 958 Query: 652 TSNPSWAKGLPLKAE 666 + S +PL + Sbjct: 959 ENAMS--LSVPLVVD 971 >gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] Length = 941 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 116/693 (16%), Positives = 217/693 (31%), Gaps = 166/693 (23%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63 +D + + ++ +F HD +P LK LEN Sbjct: 369 VDTETTSLDE--MRAQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEVLARLKPWLEN 426 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQK 122 + N ++R V N I + + T++ + + A + + Sbjct: 427 PARPKLGQNIKYDRHV---FANHGIEVQGYAHDTMLQSYVLEVTKPHGLASLAERHVGRS 483 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 ++L + + EY D T ++ + L P Sbjct: 484 GINYEDLCGKGVHQIKFNQV----------DIARAAEYSCEDSDQTLDVHRVLWPQLQAN 533 Query: 183 QELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++L ++ Q I G +D + + + +L+ E + G + Sbjct: 534 EKLLFIYQLEMQSSETLYRIERNGVLIDAPMLARQSHELGQRLLQLETEAYEMA-GQPFN 592 Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L F + G+ + +T + VL + P ++ +R Sbjct: 593 LGSPKQLAEIFFDKLGMKVVKKTPSGARSTDEDVLEKLAEDHPLPAKLLEHR-------- 644 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 +L L + T + + N PR R H Q + Sbjct: 645 ------------------SLSKLKGTYTDKLA----QLAN-PRTGRVHTHYAQAVAVTGR 681 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++DP+ I VR +A G + AD + IE R++A ++G++ L AF Sbjct: 682 LSSNDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESLLHAFT 741 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ T A F VA QV+ +QR KV+ L Y + +A G+ A Sbjct: 742 AGLDVHRATAAEVFGVALEQVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAAA 798 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + ++ + A E ++ T R R ++ Sbjct: 799 AYIDRYFQRYP------GVKHYMDSTRQLAKEQGYVETVFGR-----RLLLPEINS---- 843 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 P+G R G R+ +N Sbjct: 844 ---------------------------------------PNG----PRRAGAERAAINAP 860 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETP 637 Q + D++ M ++A K G +++ VHDE+V E P Sbjct: 861 M------------------QGTAADLIKLSMVKVQQVLDAEKRGTKMIMQVHDELVFEVP 902 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 + + E+ + + LM +PL AE G+ Sbjct: 903 EAEVEWVRTEIPRLMAGVAE--LKVPLLAEIGF 933 >gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016] gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016] Length = 913 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 110/595 (18%), Positives = 188/595 (31%), Gaps = 87/595 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-- 56 + D ET + ID A+ V+ +F + H + + Sbjct: 334 IAFDTET-TSID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 LK LE+ V ++ ++ VL + I + +L + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANA-STPIALRGVAYDTMLESYVLDSTATRHDM 442 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-- 169 ALK +++ + K T + + A G Y D VT Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRL 492 Query: 170 --EIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++++LE + E L + I G VD L ++ + + L++ Sbjct: 493 HQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALER 552 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + L G + ++L L+ + GL + T T + L A Q F Sbjct: 553 QAYDLA-GQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAV--LAELAEQDFEL- 608 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +Q+ S+ P Q R R H Sbjct: 609 -----------------------PKVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSYH 645 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R +A +G KL+ AD + IE R++A +A + Sbjct: 646 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKD 705 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF D++ T A F V V DQR K + L Y A +A Sbjct: 706 DGLLDAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINFGLIYGMSAF---GLAKQI 762 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + A E A E F+ T R + + HS Sbjct: 763 GVERKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGFVETLFGR-RLYLPEIHS 815 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + + + G A KR V + ++ + ++L LV Sbjct: 816 KNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELV 870 >gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] Length = 933 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 110/679 (16%), Positives = 204/679 (30%), Gaps = 166/679 (24%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77 + G+ Y + A + D PV+L + + LK LE+ V N F++ Sbjct: 380 EPGVAAY------LPVAHDYLDAPVQL----DRAYVLETLKPLLEDEKALKVGQNLKFDK 429 Query: 78 TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 ++L DI + +L + + + + K +E+ + Sbjct: 430 SLLARY---DIDLRGIAYDTMLESYVLDSVSGRHDMDSLSDRYLDHKTITFEEIAGKGKN 486 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQE 184 T + A Y D VT ++ + P + E Sbjct: 487 QLTFNQI----------ALEQAAPYAAEDADVTLQLHLAMWPKLKESTGQLKVFNEIEMP 536 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + I G +D + ++ + +L+ + L + ++L+ L+ Sbjct: 537 LLPVLSHIERTGVLIDQHILAAHSKELSKRLGELEIQAHELA-EEPFNLASTKQLQAILY 595 Query: 245 LETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + L + T +T + VL+ P + R Sbjct: 596 EKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVILEYR-------------------- 635 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 G ++ P P R H Q +T +SDP+ I Sbjct: 636 -----------GLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATGRLSSSDPNLQNIP 684 Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R IA G ++V AD + IE R++A ++ ++ L AF G+D++ T Sbjct: 685 VRNDEGRRIRQAFIAPAGYRIVAADYSQIELRIMAHLSQDRGLLNAFAAGKDIHRATAGE 744 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + +VT +QR K + L Y A +A G+ Sbjct: 745 VFGLPLDKVTNEQRRSAKAINFGLIYGMSAF---GLARQLGIPRGEA------------- 788 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 ++ R + + + +Q E G Sbjct: 789 -------------------------------QRYMDLYFERYPGVLEYMERTRQQASEQG 817 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 RR L LP RS + + R+ Sbjct: 818 YVSTLDGRR---------------LYLPDVRS----------------SNGMRRKAAERA 846 Query: 596 KLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTD-EFNASML 647 +Q + DI+ M+ +++ VHDE+V E ++ + + Sbjct: 847 -AINAPMQGTAADIIKRAMIAVDAWLQGQQQPLVRMIMQVHDELVFEVHESAMDDACLRI 905 Query: 648 YHLMTSNPSWAKGLPLKAE 666 LM + A +PLK + Sbjct: 906 RSLMEGSMELA--VPLKVD 922 >gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2] gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2] Length = 956 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 104/670 (15%), Positives = 199/670 (29%), Gaps = 156/670 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 ++ I F + P D + ++ K LE+ + + N ++ +VL Sbjct: 404 SDKAAYIPFGHNYPGAP----DQIDKQLVIDKFKPLLEDDSLKKIGQNLKYDMSVLAEDA 459 Query: 85 NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + + +L + + + ALK +K ++ + K T + Sbjct: 460 GITL--RGVAFDTMLESYVLDSVATRHDMDSLALKYLGRKTISFTDIAGKGAKQLTFNQI 517 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQT 191 Y D VT + + L P E L + Sbjct: 518 ----------GLHEASPYAAEDADVTLRLHQTLWPKLEAEDRLPEVFRDIELPLVTVLSR 567 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 I G VD L +Q + +L ++ + G + ++L L+ + + + Sbjct: 568 IERNGTYVDATLLKHQSQFLAKRMAELQEKAFDIA-GQEFNLASPKQLGEILYEKLEIPV 626 Query: 252 EDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T T + VL P + Sbjct: 627 IKKTPKGAPSTAEAVLQELAHDYPLP-------------------------------QVI 655 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362 + + G ++ P R R H Q +T +SDP+ I Sbjct: 656 MDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSEEGR 715 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +A +GKK+V D + IE R++A ++G++ AFE G D++ T A + Sbjct: 716 KIRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKGLTDAFEQGLDIHRATAAEVWGKTLD 775 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +V+ + R K + L Y A +A GL + E + + + Sbjct: 776 EVSDNDRRNAKAINFGLIYGMSAF---GLAKQLGLPRKEAQEYID--LYFERYPGVKKYM 830 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + + +T+ + Sbjct: 831 EDTRAL----------------------------------AIDKGYVETV-------YGR 849 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R +P ++ K + R G R+ +N Sbjct: 850 RLYLPEIHSKNGQ---------------RRQGAERAAINAPM------------------ 876 Query: 603 QAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNP 655 Q + DI+ + M+ T +++ VHDE+V E D + + M S Sbjct: 877 QGTAADIIKKAMIKVHDWLETTHFDAKMIMQVHDELVFEVADDQVDDLVKEVKARMESAA 936 Query: 656 SWAKGLPLKA 665 L + A Sbjct: 937 ELKVPLIVDA 946 >gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62] gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62] Length = 930 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 130/705 (18%), Positives = 223/705 (31%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H +P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNAELVGISIAFQAGEAVYIPVGHSLTAVPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNNIAGDAMLASYIIESHLGHGL 459 Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + G L L + E C + A EY D Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + RL + K+ E++ + + G +D A + + E KL+ Sbjct: 507 LRLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P PR + Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF++GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622 G R+ +N Q + D++ M+N G Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMINVRNWLSDGIGS 874 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919 >gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont] Length = 929 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 112/620 (18%), Positives = 205/620 (33%), Gaps = 99/620 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQ--------V 56 D ET S +D ++ AF HD PQ Sbjct: 355 DLETDS-LDTL---------SANIVGIAFAVAPGKAAYLPVAHDYLDAPPQLDRAAVLKQ 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE++ V N ++R VLK N DI ++ +L N + Sbjct: 405 LKPLLEDSKAAKVGQNLKYDRGVLK---NYDIELNGIKFDTMLESYCLNSVGGKHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + K +E+ + T + A Y D VT ++ + Sbjct: 462 AARWLNHKTVTFEEIAGKGKYQLTFNQI----------ALEQAAHYAAEDADVTLQLHLQ 511 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P +E L + + G +D + +Q + +L+Q+ Sbjct: 512 MWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQNILAKHSQELTTRLAELEQKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + + T +T ++VL+ P + + Sbjct: 572 ELA-GEPFNLSSTKQLQTILFEKQEIKPTKKTPGGAPSTSEKVLAELALDYPLPKVILEH 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P P R H Sbjct: 631 R-------------------------------GLSKLKSTYTDKLPQMINPITGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA K++V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSNDPNLQNIPVRNEEGRRIRQAFIAGADKRIVAADYSQIELRIMAHLSQ 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF GED++ T + F VA ++V+ +QR K + L Y A ++ Sbjct: 720 DKGLLDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAF---GLSRQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + +E R+M+ + A D + + + Sbjct: 777 LNIGAGEAKKYMDL-----YFERYPGVLRYMEATRAQAA--DKGYVETLDGRRLWLPDIN 829 Query: 515 SRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 S + +A G A II R V ++++ + + +++ LV+ Sbjct: 830 SSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDGWLLQQNSDEVKMIMQVHDELVFEI 889 Query: 573 VGNNRSYLNTTTRQLTREYT 592 + + + T R+L Sbjct: 890 HKDAVAGASQTIRELMENSM 909 >gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 917 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 114/685 (16%), Positives = 209/685 (30%), Gaps = 174/685 (25%) Query: 6 IDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ 55 ID ET S + + G+ Y I A + D P++L + + Sbjct: 344 IDTETTSLEPMQAQLVGISLCCEPGVAAY------IPVAHRYQDVPLQL----SRASVLE 393 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 L+ LE+ V N ++ + N + + TL+ + + Sbjct: 394 KLRSWLEDDSKPKVGQNLKYDSHI---FANHGVTLRGIVHDTLLQSYVFESHRSHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ ++K +++ + + + EY D +T ++ +R Sbjct: 451 ALRHLNRKTMTFQDVCGKGASQLCFDQV----------DIARATEYAAEDADITLQLHQR 500 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P E + Q + G +D L T + + +++Q+ Sbjct: 501 MFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEIEQQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + + +T + VL + P + Sbjct: 561 ELA-GQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKLLLE- 618 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G S+ P P R H Sbjct: 619 ------------------------------YRGLSKLKSTYTDKLPKMIDPATGRVHTNY 648 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IA G +V AD + IE R++A ++ Sbjct: 649 AQAVAVTGRLSSNDPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISE 708 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L+AF GED++ T A F VA V+ +QR KV+ L Y A +A Sbjct: 709 DENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAF---GLAGN 765 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ ++ R+M + E Sbjct: 766 LGIERAAAQSYIEKYFYR-----FSGVKRYMDDTRLE----------------------- 797 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDV 573 + + + R+ L LP S R Sbjct: 798 --------------AKARGYVQTVFGRR-----------------LWLPEINSPNGPRRQ 826 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLT 627 G R+ +N Q + D++ M + A K +++ Sbjct: 827 GAERAAINAPM------------------QGTAADLIKLAMIAVQDWLEAEKLQTKMIMQ 868 Query: 628 VHDEIVCETPDTD-EFNASMLYHLM 651 VHDE+V E P+T+ L LM Sbjct: 869 VHDELVLEVPETELALVRVKLPELM 893 >gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 114/685 (16%), Positives = 209/685 (30%), Gaps = 174/685 (25%) Query: 6 IDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ 55 ID ET S + + G+ Y I A + D P++L + + Sbjct: 338 IDTETTSLEPMQAQLVGISLCCEPGVAAY------IPVAHRYQDVPLQL----SRASVLE 387 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 L+ LE+ V N ++ + N + + TL+ + + Sbjct: 388 KLRSWLEDDSKPKVGQNLKYDSHI---FANHGVTLRGIVHDTLLQSYVFESHRSHDMDSL 444 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ ++K +++ + + + EY D +T ++ +R Sbjct: 445 ALRHLNRKTMTFQDVCGKGASQLCFDQV----------DIARATEYAAEDADITLQLHQR 494 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P E + Q + G +D L T + + +++Q+ Sbjct: 495 MFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEIEQQAY 554 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + + +T + VL + P + Sbjct: 555 ELA-GQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKLLLE- 612 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G S+ P P R H Sbjct: 613 ------------------------------YRGLSKLKSTYTDKLPKMIDPATGRVHTNY 642 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IA G +V AD + IE R++A ++ Sbjct: 643 AQAVAVTGRLSSNDPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISE 702 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L+AF GED++ T A F VA V+ +QR KV+ L Y A +A Sbjct: 703 DENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAF---GLAGN 759 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ ++ R+M + E Sbjct: 760 LGIERAAAQSYIEKYFYR-----FSGVKRYMDDTRLE----------------------- 791 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDV 573 + + + R+ L LP S R Sbjct: 792 --------------AKARGYVQTVFGRR-----------------LWLPEINSPNGPRRQ 820 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLT 627 G R+ +N Q + D++ M + A K +++ Sbjct: 821 GAERAAINAPM------------------QGTAADLIKLAMIAVQDWLEAEKLQTKMIMQ 862 Query: 628 VHDEIVCETPDTD-EFNASMLYHLM 651 VHDE+V E P+T+ L LM Sbjct: 863 VHDELVLEVPETELALVRVKLPELM 887 >gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109] gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109] Length = 986 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 115/655 (17%), Positives = 211/655 (32%), Gaps = 152/655 (23%) Query: 49 HDPVMP-QVLKEALE----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +P + + AL +++ N+ ++R +L + + + +LA Sbjct: 436 SPEQLPLETVLTALAPWLASSNHPKTLQNAKYDRLIL---LRHGVALEGVVIDTLLADYL 492 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELI--ARFC-KGETHECLYDRNKPNHREAWRLFGEY 160 +A + G EL+ F + L + + Y Sbjct: 493 RDAAA---------------KHGLELMAEREFGFQPTAFTDLVGKKQTFADVPLEPASLY 537 Query: 161 CKGDVTVTREIFKRLE-----------PLSSK-EQELWYLDQTINDRGYCVDVALAHTLN 208 C DV VTR + L PL + EQ L + + G +DV L+ Sbjct: 538 CGMDVHVTRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLS 597 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVL 263 + + +L+ + ++ G+ + ++L LF GL + T+T T VL Sbjct: 598 EEMGSTLQQLESDAKA-AAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVL 656 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 P V +R+ S+ Sbjct: 657 EKLGNDHPVVPLVLEHRVL-------------------------------SKLKSTYIDA 685 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P R H + +Q +T +S+P+ I S +R + EG L+ Sbjct: 686 LPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLS 745 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+L ++GE+ +A+ +G+D++ T + +V+ D+R +GK + Sbjct: 746 ADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLL--LDKNEVSPDERRLGKTINFG 803 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y GA Q+ A TG++ + + + + F E A+ + Sbjct: 804 VIYGMGA---QRFARETGVSQSEAKEFL--ARYKQRYPKVFAFL----ELQERLALSRGY 854 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + T R + D+N L Sbjct: 855 VETILGRRRP------------------------------------------FHFDRNGL 872 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 +L ++ N + Q R +Q S DI+ M+ Sbjct: 873 GRLLGK----APLEIDLNVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQ 922 Query: 619 KAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 A ++L VHDE+V E P+ + ++ M A +PL E Sbjct: 923 DALQRQGLPAQLLLQVHDELVLEVAPNALDATRELVVQTMEQAV--ALSVPLVVE 975 >gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153] Length = 930 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 128/705 (18%), Positives = 219/705 (31%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFA 506 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622 G R+ +N Q + D++ M++ G Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 874 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919 >gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130] gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130] Length = 978 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 110/635 (17%), Positives = 200/635 (31%), Gaps = 142/635 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115 LK LE V +A N ++ VL +++ T++L+ + Sbjct: 452 LKPMLEAPSVLKIAQNLKYDWLVLSRY-GIEVGPFD--DTMLLSYVLDAGRGKHGMDALS 508 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L KE+ T + + + Y D VT ++ L Sbjct: 509 LAHLDHTPIPFKEVAGSGKSMVTFDKV----------SIEKASAYAAEDADVTLRLWTLL 558 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + E + L + + RG +D + L+ + + ++ ++ + Sbjct: 559 KARLVAEKMVTVYERLERPLVPVLCRMEARGVEIDRQILSRLSGELAQKAAGIEADIHEM 618 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280 G + ++L LF + L T+T T + L ++ + R Sbjct: 619 A-GEPINIASPKQLGELLFGKMELPGGKKTKTGQWATGAQALEDLAAEGHELPRRIVDWR 677 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ P R H Sbjct: 678 QL-------------------------------TKLKSTYTDALPTFINKTTGRVHTSYA 706 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T +S+P+ I +R+ IA++G KLV AD + IE RVLA MA Sbjct: 707 MASTTTGRFSSSEPNLQNIPVRTEAGRKIRTAFIAADGHKLVSADYSQIELRVLAHMADI 766 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G D++ T + FNV + R K + + Y A +A+ Sbjct: 767 SQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAINFGIIYGISAF---GLANNL 823 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + +K +E +M E K + ++H Sbjct: 824 GIDRGEASDYIK-----MYFERFPGIRDYMDET-------------------KKFAREHG 859 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V ++ +R P + P R+ N Sbjct: 860 YVETIF-------------------GRRAHYPEIKSSN---------PQMRAF------N 885 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ +N + G + I +A++R EG + A K ++L VHDE++ E Sbjct: 886 ERAAINAPIQ---------GSAADIIRRAMAR---MEGALAAEKLSAQMLLQVHDELIFE 933 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 PD + + + +M P A L PL+ + Sbjct: 934 VPDDEVDATIETVVKVMEDAPMPALSLSVPLQVDA 968 >gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis] Length = 920 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 112/678 (16%), Positives = 210/678 (30%), Gaps = 165/678 (24%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56 D ET + +D + A ++ F+ FD HD V+ Sbjct: 351 DTET-TSLD------YRIA---QIVGFSVAFDAQDAYYVPLAHDYEGAPEQLNREVILAQ 400 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGE 114 +K LE+ V + H+ ++ VL+ N I + W +LA A Sbjct: 401 IKPILEDESVKKIGHHLKYDAHVLE---NHGIHLAGWYFDTMLASYVLYSVATRHGMDDV 457 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A S +++ R K +T + Y D VT +++ Sbjct: 458 ARLYLSHLTTTYEQVAGRGAKQKTFNQI----------PLETAAHYAAEDAHVTYRLYEV 507 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L L + E + + + + G +D+A L L+ ++ Sbjct: 508 LSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQNLENQIM 567 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G + +++ LF + GL + T S+++ + + Sbjct: 568 EIA-GESFNVSSPKQVGEVLFEKLGL---KGGKKTTTGQYSTSESVLEKIEHPIAQL--- 620 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 L++ G S+ Q P R H Q + Sbjct: 621 -----------------------ILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQAL 657 Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T ++DP+ I I +R +A EG+ L+ AD + IE R++A ++ ++ Sbjct: 658 TATGRLSSTDPNLQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEAL 717 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A + +VT DQR K + L Y + T Sbjct: 718 LDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTR-- 775 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++++++ + +P Sbjct: 776 -----------------QESQDYIKQYFHRYP---------------------------- 790 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +++ + + + +E G + GR L D+ Sbjct: 791 GIYDYMQRTRQVALEQG-----------------------FVETLLGRRLYTPDID---- 823 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVC 634 N R+ L Q + DI+ M+ K ++L VHDE+V Sbjct: 824 ARNMMVRKAAERAAINAPL-----QGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVF 878 Query: 635 ETPDTDEFNAS-MLYHLM 651 E + + L +M Sbjct: 879 EVDEDIADELAPKLAEVM 896 >gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae] Length = 936 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 103/642 (16%), Positives = 193/642 (30%), Gaps = 159/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-----GLPSALKA 111 +K L + ++ + N F+ V+ N DI + +L GL Sbjct: 411 IKPILVDKNIQKIGQNLKFDYGVMA---NYDIELKNMAFDTMLESYVLNSVAGL-GRHDM 466 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 A + + K +E+ + T + Y D VT + Sbjct: 467 DSLAQRHLNHKTITFEEIAGKGKNQLTFNQI----------PLEQASTYAAEDADVTLLL 516 Query: 172 FKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P E +L + Q + G +D ++ + ++++ Sbjct: 517 HQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVGVLIDANKLAKQSREIASRLMEIEK 576 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQV 276 E ++ + ++L+ LF + L + +T + VL + Sbjct: 577 EAYAIA-EQEFNLASPKQLQAILFEKLQLPVVKKTPSGAPSTNEEVLEELAFSHELPKII 635 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ P P+ R H Sbjct: 636 LQHRSL-------------------------------SKLKSTYTDKLPMMIHPKTKRVH 664 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q +T + DP+ I +R IA EG K+V AD + IE R++A Sbjct: 665 TSYHQAVTATGRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKIVAADYSQIELRIMAH 724 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ ++ L AF G+D++ T A F V VT +QR K + L Y A + Sbjct: 725 LSQDKGLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINFGLIYGMSAF---GL 781 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + G+ H Sbjct: 782 SRQLGITRGQAQHY--------------------------------------------MD 797 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + R + + + + +Q E G + +GR L Sbjct: 798 RYFERYPGVLSYMERTRKQAAEQG-----------------------YVETLAGRRLYLP 834 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IV 625 D+ +R R + +Q + DI+ + M+ K ++ Sbjct: 835 DI---------NSRNAMRRKASEREAINAPMQGTAADIIKKAMIALDKWIESVKPDLYML 885 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E ++ + + + LM + +PLK + Sbjct: 886 MQVHDELVFEVKESAVDRSQQKIRQLMEQSMQ--LTVPLKVD 925 >gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] Length = 896 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 116/690 (16%), Positives = 211/690 (30%), Gaps = 165/690 (23%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64 D + Y E V+ +F + HD + P+ L K LE+ Sbjct: 323 DTETTSLN-YME-AKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAVLAQMKPLLEDP 380 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + V N ++ +VL N I + +L + + ALK Q Sbjct: 381 NQAKVGQNLKYDASVLA---NHGIALKGIDYDTMLESYVLDSTATRHDMDSLALKYLGQN 437 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 +++ + K T + G Y D +T + + L P + Sbjct: 438 TIHFEDIAGKGAKQLTFNQV----------KVEEAGPYAAEDADITLRLHQALWPKLEEL 487 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + I +G + + H + + + +L L G Sbjct: 488 SSLLPVFRDIELPLVPVLSKIERQGALLSCEMLHQQSTELGLRLEELKSAAYELA-GQEF 546 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + L + T T + VL P + R Sbjct: 547 NLGSPKQLGEILFEKLELPIIKKTPKGAPSTAEEVLVELALDYPLPKLLLEYRSL----- 601 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 S+ P P+ R H Q + Sbjct: 602 --------------------------SKLKSTYTDKLPGMVNPQTGRVHTSYHQAVAATG 635 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA +G ++V AD + IE R++A ++ + L AF Sbjct: 636 RLSSSDPNLQNIPIRTEEGRRIRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSLLTAF 695 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G+D++ T A F V+ +V+ DQR K + L Y A +A L Sbjct: 696 KEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMSAF---GLAKQLHLGR--- 749 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 +A+ + E +P + + +++ Sbjct: 750 -------------HEAQEYIDRYFERYP---------------GVAQYMDRTRAIAK--- 778 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 Q F +T+ GR L ++ Sbjct: 779 --EQGFVETLF-------------------------------GRRLYLPEI--------- 796 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636 R R +Q + DI+ M++ + A +++ VHDE+V E Sbjct: 797 NARNKMRVQAAERTAINAPMQGSAADIIKRAMLSVDQWLEQGDANARMIMQVHDELVLEV 856 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 + + + ++ + LM+ A L ++A Sbjct: 857 ANDEVDAVSNQVCRLMSGAAELAVPLLVEA 886 >gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301] gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a str. 301] Length = 928 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 105/619 (16%), Positives = 196/619 (31%), Gaps = 98/619 (15%) Query: 7 DFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 D ET S +++ + G+ Y I A + D P D + ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAP----DQISHERALEL 404 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N ++R +L N I + +L N + Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILA---NYGIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + A G Y VT ++ + Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEHADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K E L + I G +D + H ++ + + +L+++ Sbjct: 512 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P+ R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + + E + G Sbjct: 777 LNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKELGYVETLDGRRL-----YLPDIK 829 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDV 573 S +A G A KR + + +++ ++ + +++ LV+ Sbjct: 830 SSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889 Query: 574 GNNRSYLNTTTRQLTREYT 592 ++ + QL T Sbjct: 890 KDDVDAVAKQIHQLMENCT 908 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 Q + DI+ M + A + +++ VHDE+V E D + A ++ LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 905 >gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] Length = 988 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 110/669 (16%), Positives = 219/669 (32%), Gaps = 136/669 (20%) Query: 33 FAFGFDDHPVELWDCVHD-----------PVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 +G ++ V H+ + L + L + D N+ F+R + K Sbjct: 410 CCWGMGENDVAYIPLGHNITTNLEKNLQLNTVLSTLDKILASRDYPKTFQNAKFDRLIFK 469 Query: 82 ACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + + I +LA P AL+ ++ E ++ + K E + Sbjct: 470 ---YQGVTLDGVIFDPMLASYLLNPDHTHNLTDLALRYLGLQLTEYDHIVQKSGKKEPQK 526 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLD 189 + D + YC V T ++ +L L EQ L + Sbjct: 527 TIAD-------ISIHTVANYCGKQVYATWQLVGKLREELNKIPALFKLLVDVEQPLEVVL 579 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + RG ++ A L+Q ++ + L+ + + G + ++L LF + GL Sbjct: 580 AEMEHRGVIINSAYLQQLSQYIESDLATLEIKATKIA-GEKFNLGSPKQLSYILFEKLGL 638 Query: 250 HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 + + T ++ +KL ++ G + Sbjct: 639 STKYSRKISTGYSTDAATLEKLQE--------------------------VDETGFVDAI 672 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362 +++ ++ P + R H +Q T +S+P+ I S Sbjct: 673 IEYRTLAKLKSTYVDALPELVNHKTQRIHTSFNQTATATGRLSSSNPNLQNIPIRTAFSR 732 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + G +V AD + IE R+LA ++ E ++A+ +D++ T F+ Sbjct: 733 QIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK--E 790 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT ++R K + + Y G K + +TG++ N ++ + Sbjct: 791 DVTSEERRFAKTINFGVIYGMGV---LKFSRSTGVDKNIANEFIQKFNQRYPL------V 841 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E + AI ++ T R ++ + + + E Sbjct: 842 FTYLETIKKQAISQGYVETILGR-RRYFDFTNKTLREF---------------------- 878 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 K K+ + L ++L D G RS N + Sbjct: 879 ----------KGKDLQEIELNKLKNLGPYDAGLLRSAANAP------------------I 910 Query: 603 QAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657 Q S DI+ M+ + ++L VHDE+V E P ++ + +M + Sbjct: 911 QGSSADIIKIAMVRLHQVLRPYQTKLLLQVHDELVFEVPPSEWDELQLQIKSVMENAMK- 969 Query: 658 AKGLPLKAE 666 +PL + Sbjct: 970 -LSVPLVVD 977 >gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127] gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127] Length = 930 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 90/550 (16%), Positives = 179/550 (32%), Gaps = 74/550 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + EY D VT ++ Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAYAL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + N + + + F ++E + G +S Sbjct: 782 ISRADAQKYM--NLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRL-----YLPDINSS 834 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A KR + L + + N+ +++ LV+ Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEK 894 Query: 577 RSYLNTTTRQ 586 ++ +Q Sbjct: 895 VAFFREQIKQ 904 >gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 933 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 115/685 (16%), Positives = 215/685 (31%), Gaps = 174/685 (25%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LEN 63 +D + Y E ++ +F + HD PQ L +A LEN Sbjct: 358 VDTETTSLN-YME-AKLVGLSFAVEAGKAAYLPLAHDYLDAPQQLNQAEALAKLKPLLEN 415 Query: 64 TDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 ++ V N ++ ++L D + ++ V ++ N ALK +G Sbjct: 416 PEIKKVGQNLKYDMSILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALKYLG---- 471 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K +E+ + K T + + + Y D +T + + L P Sbjct: 472 ---HKNISFEEIAGKGAKQLTFNQI----------SLEVAAPYAAEDADITLRLHQHLWP 518 Query: 178 LSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 KE EL + + +G +D L ++ + +L+Q+ + Sbjct: 519 RLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSEELARTIDELEQKAYEIA 578 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L+ F + G + T T + VL P + +R Sbjct: 579 -GESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLPKIILQHRSL 637 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + P + R H Q Sbjct: 638 A-------------------------------KLKSTYTDKLPLMVNAQTGRVHTSYHQA 666 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +S+P+ I +R IA EG+K++ AD + IE R++A ++ ++ Sbjct: 667 NAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAHLSQDKG 726 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G+D++ T A F+V +VT +QR K + L Y G+ Sbjct: 727 LLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIY--------------GM 772 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + +A+ + + +P V + Sbjct: 773 SAFGLARQLDIPRG-----EAQKYIDTYFKRYP--------------GVLNYMEET---- 809 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +A + + R+ L LP+ + +R Sbjct: 810 --------RAIAADLGYVSTLYGRR-----------------LYLPAIK---------DR 835 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHD 630 + + R+ +Q + DI+ + M+N T +++ VHD Sbjct: 836 NAM-------RRQAAERA-AINAPMQGTAADIIKKAMINVADWIANETDGEITLIMQVHD 887 Query: 631 EIVCETP-DTDEFNASMLYHLMTSN 654 E+V E D E + LM Sbjct: 888 ELVFEVDSDKAEALQEKVCQLMAEA 912 >gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ] gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ] Length = 908 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 103/532 (19%), Positives = 170/532 (31%), Gaps = 69/532 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 L+ LE+ V ++ ++ VL I + +L + + Sbjct: 384 LRPILEDPARAKVGQHAKYDMNVLAHY---GIEVRGVAYDTMLESYVLDSTATRHDMDSL 440 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI--- 171 ALK Q +++ + K T + + A G Y D VT + Sbjct: 441 ALKYLGQGTIRFEDIAGKGAKQLTFDQI----------ALEQAGPYAAEDADVTLRLHQC 490 Query: 172 -FKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +++LE + E L + I G VD L + + + +L++E Sbjct: 491 LWQKLEAIPALAKVLKEIEMPLVPVLARIERHGALVDAKLLGEQSLELGEKLQQLEREAH 550 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 L G + ++L L+ + GL + T S + + Sbjct: 551 ELA-GEPFNLASPKQLGAILYDKLGLPVLSKTAKGQPSTAESVLADLAEQGYPLPQVIMR 609 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 RS ++ P Q PR R H Q + Sbjct: 610 HRS--------------------------LNKLKGTYTDKLPQQINPRTGRIHTSYHQAV 643 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R +A EG +LV AD + IE R++A +A + Sbjct: 644 TATGRLSSSDPNLQNIPIRTTEGRRIRQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSL 703 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F VAP V+ DQR K + L Y A +A G+ Sbjct: 704 LHAFRNDLDVHRATAAEVFGVAPEAVSADQRRSAKAINFGLIYGMSAF---GLARQIGVE 760 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A E A E ++ T R + + HS+ Sbjct: 761 RKEAQAYIDRYFARYP------GVLAYMERTRAQAAEQGYVETLFGR-RLYLPEIHSKNG 813 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 L + G A KR V + + + ++L LV Sbjct: 814 ALRKAAERTAINAPMQGSAADIIKRAMVTVDAWLLESGLDARMILQVHDELV 865 >gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799] gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799] Length = 922 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 128/708 (18%), Positives = 216/708 (30%), Gaps = 189/708 (26%) Query: 6 IDFETRSPIDLTKCGICKYAE----DVCV-------ILFAFGFDDHPVELWDCVHDPVMP 54 ID ET + ID AE V + A ++ PV+L + Sbjct: 348 IDTET-TSID------YMAAELVGLSFAVEAGKGAYLPVAHDYEGAPVQL----DRDTVL 396 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSA 108 LK LE+T V N ++ +VL D + + R N A Sbjct: 397 AKLKPLLEDTAPRKVGQNLKYDMSVLAKYGIALNGIAFDTMLESYCFNSTAGRHNMDDMA 456 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 LK +G K +++ + K +T + Y D +T Sbjct: 457 LKYLG-------HKTIHFEDIAGKGAKQKTFNQI----------PLEEAAPYAAEDADIT 499 Query: 169 REIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P + E+ L + + G +D H + + Sbjct: 500 LRLHQHLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQLHQQSSEIATTLDS 559 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273 L+Q+ + G V + ++L+ F + G + T T + VL P Sbjct: 560 LEQQAHEIA-GEVFNLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEEVLQELALDYPLP 618 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R A + P P Sbjct: 619 KIILEHRSLA-------------------------------KLKNTYTDKLPQLVKP-SG 646 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +T +SDP+ I +R IA EG KL+ D + IE R+ Sbjct: 647 RVHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPEGYKLLAIDYSQIELRI 706 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ L+AF G+D++ T A F V VT +QR K + L Y G AF Sbjct: 707 MAHLSQDKGLLEAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNFGLIY--GMSAF 764 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + +A+ + +P V + Sbjct: 765 -GLAKQLDIGR----------------AEAQEYIDRYFHRYP--------------GVLE 793 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +A E + ++ R+ LP + Sbjct: 794 YMDRT------------RAQAHDKEYVETLMGRRLH-----------------LPEINAR 824 Query: 569 V-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---- 623 R R+ +N Q + DI+ + M+ Sbjct: 825 NKMRQQAAERTAINAPM------------------QGTAADIIKKAMLLVADYLSQQAED 866 Query: 624 ---IVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEG 667 +++ VHDE+V E + E + L LM+ +PL AEG Sbjct: 867 EIHLIMQVHDELVFEVREGVAEQHKDALCELMSQAAE--LDVPLLAEG 912 >gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 957 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 110/634 (17%), Positives = 203/634 (32%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN DV + N ++ T+ N + + +L + + Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVAGVAFDTMLESYTLNSTGRHNMDEL 490 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASQYAAEDADVTMKLHQV 540 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P K E L + I G +D + ++ ++L+Q + Sbjct: 541 LAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVH 600 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLME 659 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P + R H Q + Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA +G K+V AD + IE R++A +A ++ Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 753 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 754 ITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 DA+ + + + V Sbjct: 811 R----------------ADAKKYMELYFQRY-------------------------PAVQ 829 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ K+ V ++ GR L ++ ++ Sbjct: 830 QFMTDIRESAS------------KKGYVETLF--------------GRRLYLPEIKSS-- 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ KA +++ VHDE+V Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914 Query: 634 CETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 915 FEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIAE 946 >gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090] gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2] gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090] gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] Length = 930 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 130/705 (18%), Positives = 222/705 (31%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNNIAGDAMLASYIIESHLGHGL 459 Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + G L L + E C + A EY D Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + RL + K+ E++ + + G +D A + + E KL+ Sbjct: 507 LRLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P PR + Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF++GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622 G R+ +N Q + D++ M+N G Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMINVRNWLSDGIGS 874 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919 >gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH] gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH] Length = 930 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 88/550 (16%), Positives = 178/550 (32%), Gaps = 74/550 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + + + T + EY D VT ++ Sbjct: 467 RYLGHETIAFESIAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPKILVEHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + F ++E + G +S Sbjct: 782 ISRPDAQKYMD--LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRL-----YLPDINSS 834 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A KR + L + + N+ +++ LV+ Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEK 894 Query: 577 RSYLNTTTRQ 586 ++ +Q Sbjct: 895 VAFFREQIKQ 904 >gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638] gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638] Length = 930 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 95/539 (17%), Positives = 179/539 (33%), Gaps = 78/539 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V N F+R +L+ N I + +L N + Sbjct: 405 ELLKPLLEDEKAKKVGQNLKFDRGILQ---NYGIELRGIAYDTMLESYILNSVAGRHDMD 461 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +E+ + T + A G Y D VT ++ Sbjct: 462 SLSDRWLKHKTVTFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 511 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P K E L + I G +D A+ H ++ + + ++L+Q+ Sbjct: 512 LKMWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHKHSEELALRLSELEQK 571 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 AHEIA-GEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 630 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 Q+ G ++ P P+ SR H Sbjct: 631 -------------------------------QYRGLAKLKSTYTDKLPLMINPKTSRVHT 659 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + +++P+ I +R IA + +V AD + IE R++A + Sbjct: 660 SYHQAVAATGRLSSTEPNLQNIPVRNEEGRRIRQAFIAPKDYLIVSADYSQIELRIMAHL 719 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT DQR K + L Y A ++ Sbjct: 720 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINFGLIYGMSAF---GLS 776 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + E + + + E + G Sbjct: 777 RQLNIPRKESQKYMD--LYFERYPGVLEYMERTRAQAKEKGYVETLDGRRL-----YLPD 829 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 S + +A G A KR + + +++KDK + +++ LV+ Sbjct: 830 ITSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELVF 888 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 Q + DI+ M+ K +++ VHDE+V E D E + ++ LM Sbjct: 851 QGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELVFEVHHEDLEAVSKKIHELME 907 >gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2] gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2] Length = 928 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 194/621 (31%), Gaps = 141/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ + V N ++R +L N I + +L N + Sbjct: 403 ELLKPLLEDENAHKVGQNLKYDRGILA---NYGIELRGITFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +E+ + T + A G Y D VT ++ Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + + L + + G +D A+ H ++ + +L+Q+ Sbjct: 510 LKMWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDPAVLHKHSEELTQRLNELEQK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P + R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINKKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA E +V AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIYGMSAF---GLA 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + +A+ + E +P Sbjct: 775 RQLNIPRK----------------EAQKYMDLYFERYP---------------------- 796 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + Q E G + GR L D Sbjct: 797 ------GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPD 827 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 + ++ + G + I +A+ I +G + + +++ VHDE+ Sbjct: 828 IKSSNGARRAGAERAAINAPMQGTAADIIKRAM---IAVDGWLQTEQPRVRMIMQVHDEL 884 Query: 633 VCETPDTD-EFNASMLYHLMT 652 V E D E + ++ LM Sbjct: 885 VFEVHKDDLESVSKKIHQLME 905 >gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02] gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18] gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140] gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19] gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11] gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18] gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1] gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1] gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332] gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679] gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035] gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae TCDC-NG08107] Length = 908 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 130/705 (18%), Positives = 222/705 (31%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 331 TIGIDTET-TSLD---------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 380 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 381 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNNIAGDAMLASYIIESHLGHGL 437 Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + G L L + E C + A EY D Sbjct: 438 DELSGRWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 484 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + RL + K+ E++ + + G +D A + + E KL+ Sbjct: 485 LRLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLE 544 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 545 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 603 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P PR + Sbjct: 604 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPRDN 632 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A G +V AD + IE R+ Sbjct: 633 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 692 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF++GED++ T A F AP V+ +QR K + L Y G Sbjct: 693 MAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 750 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 751 -GLAKSLGIDNLSAKNFID----------------------------------------- 768 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 769 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 810 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622 G R+ +N Q + D++ M+N G Sbjct: 811 NANARAGAERAAINAPM------------------QGTASDLIKRAMINVRNWLSDGIGS 852 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 853 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 897 >gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619] gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619] Length = 915 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 117/688 (17%), Positives = 204/688 (29%), Gaps = 158/688 (22%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D + A+ ++ +F + H HD P L K L++ Sbjct: 339 DTETTSLD--AQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLQDP 396 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N+ ++ +L + I + +L N + A K Sbjct: 397 AKEKVGQNAKYDINILAN-GSPAIQMQGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHA 455 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------ 176 +++ + K T + G Y D +T + + L+ Sbjct: 456 TIAFEDIAGKGAKQLTFNQI----------HLDKAGPYAAEDADITLRLHQALQARLAQT 505 Query: 177 ----PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 P+ E L + I +G VD AL + + V+ L++ L G Sbjct: 506 PSVLPVLMDIEMPLVPVLAKIERQGALVDAALLQIQSGELGVKMADLERRAYELA-GEEF 564 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L + L+ + G+ + T + + + Sbjct: 565 NLGSPKQLGSILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGYPLPEVL---------- 614 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +Q+ S+ P Q PR R H Q + + Sbjct: 615 ----------------MQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSS 658 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I +R IAS G KL+ AD + IE R++A +A ++ L AF Sbjct: 659 SDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNNL 718 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A F VA VT DQR K + L Y A +A G++ + Sbjct: 719 DVHRATAAEVFGVALEAVTTDQRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQDYI 775 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + +R + + + Sbjct: 776 D--------------------------------------------RYFARYPGVLAYMER 791 Query: 527 AFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 Q E G + +R +P + K P+ R G R+ +N Sbjct: 792 TRAQAAEQGFVETLFGRRLYLPDINAKN---------PALRK------GAERTAINAPM- 835 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639 Q + DI+ M+N ++L VHDE+V E + Sbjct: 836 -----------------QGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVRED 878 Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 + M+ +PL E Sbjct: 879 LVDQVKDEIRGQMSKAAQ--LDVPLLVE 904 >gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] Length = 921 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 96/597 (16%), Positives = 187/597 (31%), Gaps = 91/597 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALE 62 D ET ID K G+ + +F ++ + + + AL+ Sbjct: 353 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPANSVEAAKVVERFSPALQ 402 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 N + N F+ VL+ ++ + + ++A P A Sbjct: 403 NPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 459 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + +ELI + L RN P EY D +T ++ P K Sbjct: 460 QTVHIEELIG----PKGKNQLSMRNVPV-----EQIAEYAAEDADITLKLKNYFAPELKK 510 Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L Y+ + G +D + + KL+QE+ L G Sbjct: 511 EGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELA-GTEF 569 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF L T+T T + VL + P ++ Sbjct: 570 NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLLE-------- 621 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + G + P P+ + H +Q +T Sbjct: 622 -----------------------YRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTST 658 Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I + +R I AD + IE R++A ++G+ ++ Sbjct: 659 GRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIE 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF++G D++ T A+ + + +VT D R K + Y +A G+ + Sbjct: 719 AFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVF---GLAERLGIPRS 775 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L+ + + E + A E ++ T +R K+ +S + + Sbjct: 776 ESKELIDG------YFSTYPRIKEYMEESIKVAKEKGYVETIFKR-KRFLSDINSHNAVV 828 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 + G A K V + +++ ++L L + Sbjct: 829 RGYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEE 885 >gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 930 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 92/539 (17%), Positives = 175/539 (32%), Gaps = 78/539 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ + V N ++R +L+ N I + +L + + Sbjct: 405 ELLKPILEDDNALKVGQNLKYDRGILQ---NYGIELRGIAFDTMLESYILDSVAGRHDMD 461 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +E+ + T + A G Y D VT ++ Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 511 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P K E L + I G +D + H + + T+L+Q+ Sbjct: 512 LKMWPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTELEQK 571 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 AHELA-GEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 630 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 631 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 659 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + ++DP+ I +R IA + +V AD + IE R++A + Sbjct: 660 SYHQAVAATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHL 719 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A ++ Sbjct: 720 SRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINFGLIYGMSAF---GLS 776 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + E + + + E + G Sbjct: 777 RQLNIPRKESQKYMD--LYFERYPGVLEYMERTRAQAKEKGYVETLDGRRL-----YLPD 829 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 S + +A G A KR + + +++K+K + +++ LV+ Sbjct: 830 IKSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVF 888 >gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256] gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256] Length = 952 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 125/706 (17%), Positives = 218/706 (30%), Gaps = 180/706 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 374 TIGIDTET-TSLD---------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 423 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 424 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 480 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 481 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFA 527 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 528 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 587 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE ++ G + ++L+ LF + G+ + L +T T + VL P Sbjct: 588 QEAYAVA-GQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 646 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 647 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 675 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 676 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 735 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 736 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 793 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + Sbjct: 794 -GLAKSLGIDNLSAKTFID----------------------------------------- 811 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 812 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 853 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621 G R+ +N Q + D++ M++ Sbjct: 854 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLK 895 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E P+ + + L +M +PL AE Sbjct: 896 SKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 941 >gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 963 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 117/689 (16%), Positives = 214/689 (31%), Gaps = 149/689 (21%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID G+ + +I +F HD P P L K LE+ Sbjct: 382 IDTETDGLD--TKTAHLIGISFAVAPGKAAYLPLGHDYPEAPAQLNRDKVLALFKPLLED 439 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 V N F++++L N I + +L N + + + + Sbjct: 440 PQALKVGQNLKFDQSLLA---NYGIKLQGIAFDTMLESYVFNSVAGRHDMDSLSERHLNH 496 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177 K +++ + T + Y D VT + L P Sbjct: 497 KTLSFEDIAGKGKNQLTFNQI----------PLEQAAIYAAEDADVTLRLHLALWPKLKE 546 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L E L + + G +D + ++ + + T+L+++ + G Sbjct: 547 NPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDILLNHSKELQLRLTELEKKAHDIA-GET 605 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+T L+ + L + T T + VL+ P + +R Sbjct: 606 FNLNSTQQLQTILYEKQTLPVLKKTPKGAPSTNEAVLAELALDYPLPKIILEHRSL---- 661 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ P P R H Q +T Sbjct: 662 ---------------------------TKLKTTYTDKLPLMIHPLSGRVHTSYHQAVTST 694 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R IA G ++V AD + IE R++A ++ +Q L A Sbjct: 695 GRLSSRDPNLQNIPVRNEEGRRIRHAFIAPRGYQIVAADYSQIELRIMAHLSQDQGLLNA 754 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D+++ T A F + +QV+ QR K + L Y A + LN++ Sbjct: 755 FSEGQDIHLITAAEVFGLPVSQVSAQQRRSAKAINFGLIYGMSAFGLARQ-----LNVSR 809 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 F N + ++ + E A+++ ++ T R + HS+ + Sbjct: 810 FEAERYMNLYFTHYPKVLDYMQRT----REEAVKNGYVTTLEGR-RLYLADIHSKNANRR 864 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + G A KR + + D + Sbjct: 865 KAAEREAINAPMQGTAADIIKRAMIHI-----------------------DFWLQQEEQK 901 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 +Q +R I+Q VHDE+V E D+ Sbjct: 902 LAPKQKSR--------VNLIMQ------------------------VHDELVFEVHDSVL 929 Query: 642 FNA-SMLYHLMTSNPSWAKGLPLKAE-GY 668 +A + LM + + L LK + G+ Sbjct: 930 KSATDKIRELMEKS---TQNLLLKVDIGF 955 >gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] Length = 933 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 110/642 (17%), Positives = 195/642 (30%), Gaps = 156/642 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V V N F+ VL I + +L + + Sbjct: 407 ERLKLLLEDEKVLKVGQNLKFDMGVLARY---GINLRGIAYDTMLESYVLDSVGGRHDMD 463 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A + K +E+ + T + Y D VT + Sbjct: 464 NLADRYLGHKTITFEEIAGKGKNQLTFNQIAL----------AQAALYAAEDADVTLRLH 513 Query: 173 KRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + P + EL + I G +D A+ +Q + +L+ + Sbjct: 514 LAMWPQLKQSAELLRVFNEIDMPLVPVLSHIERTGVLIDPAILSVHSQELTKRLGELEIQ 573 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L G + L++L+ L+ + L + T +T + VL+ P + Sbjct: 574 AHELA-GEPFNLVSLKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVIL 632 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G ++ P P R H Sbjct: 633 E-------------------------------YRGLAKLKTTYTDKLPLMINPVSGRVHT 661 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T +SDP+ I +R IA EG ++V AD + IE R++A + Sbjct: 662 SYHQAVTATGRLSSSDPNLQNIPVRNDEDRRIRQAFIAPEGYRIVAADYSQIELRIMAHL 721 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + LKAF G+D++ T A F V +V +QR K + L Y A +A Sbjct: 722 SQDAGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIYGMSAF---GLA 778 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + + Sbjct: 779 RQLGVPRGEAQ--------------------------------------------RYMDR 794 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 R + + + + +Q E G RR L LP RS Sbjct: 795 YFERYPGVLDYMERTRQQAAEQGYVTTLDGRR---------------LYLPDARS----- 834 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIV 625 + + R+ +Q + DI+ M+ ++ Sbjct: 835 -----------SNGMRRKAAERA-AINAPMQGTAADIIKRAMIEVDAWIQEQGQPLVRMI 882 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E ++ + ++ + LM + + A +PLK + Sbjct: 883 MQVHDELVFEVHESVIDASSQRIRELMEGSMALA--VPLKVD 922 >gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] Length = 918 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 120/695 (17%), Positives = 223/695 (32%), Gaps = 182/695 (26%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA-- 60 + ID ET S Y E ++ +F + HD P+ L +A Sbjct: 341 IAIDTETTSLN---------YME-AKLVGISFAVEAGKAAYLPLAHDYIDAPEQLDKAVV 390 Query: 61 -------LENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPS 107 LE+ ++ V N ++ ++ D + ++ V ++ N Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFANAGICLLGVQFDTMLESYVFNSVASKHNMDDL 450 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 ALK +G K +E+ + K T + + Y D + Sbjct: 451 ALKYLG-------HKNISFEEIAGKGVKQLTFNQI----------SLETAAPYAAEDADI 493 Query: 168 TREI----FKRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T + + RLE L E L TI +G +D L ++ + + Sbjct: 494 TLRLHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQGVLIDSMLLGQQSEELARKID 553 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272 +L+ + + G + ++L+ F + G + T T + VL P Sbjct: 554 ELEHKAHEIA-GQAFNLSSPKQLQELFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 612 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R A + P + Sbjct: 613 PKIILEHRSLA-------------------------------KLKSTYTDKLPLMVNAQT 641 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +S+P+ I +R IA EGKK++ AD + IE R Sbjct: 642 GRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELR 701 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++ ++ L AF G+D++ T A F+V ++VT DQR K + L Y G A Sbjct: 702 IMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIY--GMSA 759 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 F +A + + +A+++ + +P V Sbjct: 760 F-GLAKQLDIPRS----------------EAQSYIDTYFKRYP--------------GVL 788 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + +A + + R+ L LP+ + Sbjct: 789 KYMEET------------RAIAADLGYVSTLFGRR-----------------LYLPAIK- 818 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKA 620 +R+ + R+ +Q + DI+ + M+N T Sbjct: 819 --------DRNAM-------RRQAAERA-AINAPMQGTAADIIKKAMINIANWIETETDG 862 Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654 +++ VHDE+V E + + + + LM + Sbjct: 863 EIIMIMQVHDELVFEVDEAKADSLQAKVCELMAAA 897 >gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586] gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586] Length = 929 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 89/538 (16%), Positives = 174/538 (32%), Gaps = 78/538 (14%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 LK LEN + + N F++ V+ I + + +L + + Sbjct: 405 QLKPLLENEAIGKIGQNLKFDKGVMARY---GIDLRGIVFDTMLESYVLDSVAGRHDMDS 461 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K +E+ + T + Y D VT + + Sbjct: 462 LSERYLQHKTITFEEIAGKGKNQLTFNQI----------PLEQAAVYAAEDADVTLRLHE 511 Query: 174 RLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L +QEL + + G +D + +Q + +L+ Sbjct: 512 TLWAKLEPQQELCQVFKNIDMPLVPVLSRMERTGVLIDTTILAEHSQELTQRLAELEVRA 571 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + ++L L+ + L + T T + VL+ P + Sbjct: 572 HELA-GEAFNLASPKQLGAILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPLPKLILE 630 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R A + P P R H Sbjct: 631 HRELA-------------------------------KLKSTYTDKLPQMINPLTKRVHTS 659 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T +SDP+ I +R IA +G +++ AD + IE R++A ++ Sbjct: 660 YHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPQGYQILAADYSQIELRIMAHLS 719 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + LKAF G D++ T A F + +VT +QR K + L Y A ++ Sbjct: 720 RDAGLLKAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINFGLIYGMSAF---GLSR 776 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ N + + + + E + A + ++ T + + Sbjct: 777 QLGIARNEAQKYMN------LYFERYPGVQEYMERTRQQAADQGYVST-LDGRRLYLPDI 829 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 HSR + +A G A K+ + + +++++K +++ LV+ Sbjct: 830 HSRNAMSRKAAERAAINAPMQGTAADIIKKAMIAIDDWLQQEKPLATMLMQVHDELVF 887 >gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4] gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4] Length = 930 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 106/632 (16%), Positives = 201/632 (31%), Gaps = 162/632 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110 LK LE+ + V N ++ ++L D + ++ V ++ N ALK Sbjct: 406 LKPLLEDPSLLKVGQNLKYDMSILANVGIALKGVAFDTMLESYVFNSVASKHNMDDLALK 465 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +G K +E+ + K T + Y D +T Sbjct: 466 YLG-------HKNISFEEIAGKGVKQLTFNQI----------PLETAAPYAAEDADITLR 508 Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L P K E L + I +G +D L + + + +L+ Sbjct: 509 LHQHLWPRLQKASELASVFTDIELPLVSILSQIERQGVLIDSMLLGQQSDELARKIDELE 568 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275 Q+ + G + ++L+ F + G + T T + VL P Sbjct: 569 QKAYEIA-GEPFNLGSTKQLQALFFEKLGYPVLKKTPKGAPSTAEEVLVELALDYPLPKI 627 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R S+ P + R Sbjct: 628 ILEHRSL-------------------------------SKLKSTYTDKLPLMVDGKTGRV 656 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H Q I +S+P+ I +R +A EG+K++ AD + IE R++A Sbjct: 657 HTSYHQAIAATGRLSSSEPNLQNIPIRTEEGRRIRHAFVAPEGRKILAADYSQIELRIMA 716 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ ++ L AF G+D++ T A F+V ++VT +QR K + L Y G AF Sbjct: 717 HLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIY--GMSAF-G 773 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A + +A+ + Sbjct: 774 LARQLDIPR----------------HEAQQYIDIYF------------------------ 793 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +++ V + + A + + + + +R +P + KD+N + Sbjct: 794 -KRYPGVLKYMEDTRAAAAE--QGYVSTLYGRRLYLPAI---KDRNAMRRQ--------- 838 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYD 623 R+ +N Q + DI+ + M+N T+ Sbjct: 839 ---AAERAAINAPM------------------QGTAADIIKKAMINIAQWIETETQGEIT 877 Query: 624 IVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN 654 +++ VHDE+V E + + LM Sbjct: 878 MIMQVHDELVFEVDADKADSLKLKVCELMAQA 909 >gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102] gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102] Length = 981 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 118/660 (17%), Positives = 207/660 (31%), Gaps = 145/660 (21%) Query: 36 GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D PV+L + L L + D N+ F+R +L + + + Sbjct: 427 SADSQPVQLPL----ETVVTALAPWLGSEDHPKALQNAKFDRLILMRH---GLALDGVVI 479 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 +LA L+ L E + + L + + Sbjct: 480 DTLLADY------LRDAAAKHGLELMAEREF------GFQPTAYSDLVGKKQTFADVPLE 527 Query: 156 LFGEYCKGDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 +YC DV VTR + + L L EQ L + + G +DV Sbjct: 528 AASQYCAMDVHVTRRLALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPY 587 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTC-- 259 L+ + +L+ E + G+ + ++L LF GL + T+T Sbjct: 588 LQELSTEMGTTLERLETEAKE-AAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGYST 646 Query: 260 -QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL P V +R+ S+ Sbjct: 647 DATVLEKLGDDHPVVPLVLEHRVL-------------------------------SKLKS 675 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373 P R H + +Q +T +S+P+ I S +R + G Sbjct: 676 TYIDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQAG 735 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE R+L ++GE+ +A+ +G+D++ T + +V+ D+R +GK Sbjct: 736 WTLLSADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLL--LDKDEVSADERRLGK 793 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y GA Q+ A TG++ + + + + + F E A Sbjct: 794 TINFGVIYGMGA---QRFARETGVSQSEAKDFL--SKYKQRYPKVFAFL----ELQERLA 844 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + ++ T R + Sbjct: 845 LSRGYVETILGRRRP------------------------------------------FHF 862 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 D+N L +L ++ + + Q R +Q S DI+ Sbjct: 863 DRNGLGRLLGKE----PLEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVA 912 Query: 614 MMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 M+ A ++L VHDE+V E PD E M+ M + +PL AE Sbjct: 913 MVQLQAALTSQGLPARLLLQVHDELVLEVEPDALETTRDMVVRTMENAVK--LTVPLVAE 970 >gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15] gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15] Length = 892 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 116/700 (16%), Positives = 204/700 (29%), Gaps = 168/700 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP--- 54 T +D ET S L ++ + + DH H +P Sbjct: 314 TFAVDLETTSLNPLE----------AEIVGISLSYRDHEACYIPVGHFYLGAPEQLPRRR 363 Query: 55 --QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110 L L + + V N ++ V + I + C ++A P S Sbjct: 364 VLDALTPLLIDPKIRKVGQNLKYDYQVFRRH---GIELGGVWCDTMVASYLLNPVRSGHG 420 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A++ KM +E+ + K + + + Y D Sbjct: 421 LDSLAVEHLDHKMISYEEVAGKG-KEQVN---------FAQVPVEKASTYSCEDSDAAWL 470 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + P E L + + G +D+ L L+ + +L+ Sbjct: 471 LHRLFLPRVAVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLGELSAGFGKQLAELEG 530 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC--QRVLSSNKKLTPQAIQVFN 278 + L + ++L LF + L T+T + ++L ++ Sbjct: 531 RITGLA-PEPFNLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVEELERLAEAGHEIAA 589 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 LQ+ G ++ P P R H Sbjct: 590 L---------------------------ILQYRGLAKLKSTYTDALPKLVQPATGRVHTS 622 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T+ +S+P+ I +R IA EG L+ AD + IE RVLA + Sbjct: 623 YNQTVTNTGRLSSSEPNLQNIPVRTEEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFS 682 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ AF ED++ T A F + P VT + R K + + Y GA + A Sbjct: 683 EDRVFCDAFAKDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSL---AK 739 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + + Sbjct: 740 QLGI-----------------------------------------ATKVAREFIDNYFAR 758 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 H + + E+ K ++ +L GR L D+ Sbjct: 759 HPGARAFLDGCVREAEE------------------------KGHVTTLL--GRRLPIPDI 792 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 + N R + +Q + DI+ E M+ T G +++ Sbjct: 793 KSA----NGNIRAFAQRNA-----VNYPIQGSAADIIKEAMVKVTARMRRDVVGSRLIMQ 843 Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 VHDE+V E P + L M S +PLK + Sbjct: 844 VHDELVFEVPKGEVVAMEQLVRREMEHAVS--LRVPLKVD 881 >gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301] gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301] Length = 928 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 110/633 (17%), Positives = 191/633 (30%), Gaps = 144/633 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115 +K LEN + V N +++ VL N I ++ T++ + A Sbjct: 406 IKPILENAAIKKVGQNFKYDQHVLA---NHGIALNGIAHDTMLESYVFESHKTHGMDALA 462 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +E+ + K T + + EY D +T ++ + + Sbjct: 463 ERHLGIQTISFEEVAGKGAKQVTFNQVTV----------EVASEYAAEDADITLQLHQAM 512 Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P S E + TI G +D + + + + + L+ + Sbjct: 513 YPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLIDRDMLNIQSNEIGAKLVALENQAYE 572 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF + G+ T + T + VL P + R Sbjct: 573 LA-GQPFNLGSPKQLQEILFDKLGIKPTKKTPSGAPSTDEDVLQELALDHPLPKVLLEYR 631 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G ++ P + R H + Sbjct: 632 -------------------------------GLAKLKSTYTDKLPKMINAQTGRVHTSYN 660 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R IA +G +V AD + IE R++A ++ + Sbjct: 661 QAVAITGRLASSDPNLQNIPVRSAEGRRIREAFIAPKGSHIVSADYSQIELRIMAHLSKD 720 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L AF ED++ T A F V V +QR KV+ L Y A +A Sbjct: 721 EGMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMSAF---GLAQNL 777 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKH 514 + A ++ A R +N E A + ++ T R + W + + Sbjct: 778 NIERGAAASYIERYFARYP------GVREYMQNTREIAKQKGYVETYFGR--RLWVPEIN 829 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 S +A G A K + Sbjct: 830 SPNGTRRAGAERAAINAPMQGTAADLIKLAMI---------------------------- 861 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + R KL ++ VHDE+V Sbjct: 862 --------AVDKWLRHEKLQTKL---------------------------IMQVHDELVL 886 Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E PD + E L LM + +PL AE Sbjct: 887 EVPDNELELVKQKLPELMQNVAK--LDVPLLAE 917 >gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3] Length = 925 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 107/628 (17%), Positives = 209/628 (33%), Gaps = 132/628 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LEN + + N ++ V+K +I + + T++L+ AL+A Sbjct: 399 LKPILENQAILKIGQNIKYDWLVMKQY---NIVMRSFDDTMLLS------YALEAGISTH 449 Query: 117 KLSSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + G + I K T+ + + + Y D +T +++ L Sbjct: 450 GMDILSERWLGHKSITY--KDLTYNG--RKVNSFAQIDLKQATLYAAEDADITLRLWQVL 505 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P ++ L + + +RG VD + L+ + L++E+ L Sbjct: 506 KPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQL 565 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF + GL T+ + + + Sbjct: 566 -VGEKFNIASPKQLGDILFGKIGLPGGSKTKNGQWSTSAQTLEELAAEGHILP------- 617 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R + + ++ P LP+ R H T Sbjct: 618 -------------------RKIVNWRQLTKLKSTYTDALPSYILPKTGRVHTNYSLATTS 658 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ I +R+ IAS+G L+ AD + IE RVLA A + Sbjct: 659 TGRLSSSEPNLQNIPVRTAEGRKIRTAFIASKGYLLLSADYSQIELRVLAHFADITALKE 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A+ F VA ++ + R K + + Y +A+ G++ Sbjct: 719 AFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINFGIIYGISPF---GLANQLGISRK 775 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +H ++ E + +++ + H + Sbjct: 776 EASHYIQ--LYFERFPGIKDYMEKTKMFARHHGYVE------------------------ 809 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 I +R P + P R+ N R+ + Sbjct: 810 -----------------TIFGRRIHCPEIKAVN---------PQVRAF------NERAAI 837 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 N + G + I +A+ I E + K ++L VHDE++ E P ++ Sbjct: 838 NAPIQ---------GSAADIIRRAM---IQMENALEKEKLSAKMLLQVHDELIFEVPKSE 885 Query: 641 EFNASMLY-HLM--TSNPSWAKGLPLKA 665 ++L +M + P+ + +PL+ Sbjct: 886 STKTAILVRKVMENATMPALSLSVPLEV 913 >gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846] Length = 930 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 100/625 (16%), Positives = 193/625 (30%), Gaps = 151/625 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + EY D VT ++ Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAYAL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQ 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + Q++ Sbjct: 782 ISRPDAQKYMD-----------------------------------------LYFQRYPS 800 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575 V + ++ +A + + + R+ L LP S R G Sbjct: 801 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630 R +N Q + DI+ M+ + ++++ VHD Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 884 Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654 E+V E + F + M + Sbjct: 885 ELVFEVRSEKVAFFREQIKQHMEAA 909 >gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] Length = 916 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 98/538 (18%), Positives = 175/538 (32%), Gaps = 79/538 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 L L + V N ++++VL + ++ +L N + + Sbjct: 392 LGPLLADEQRPKVGQNLKYDKSVLARA---GLELNGIKFDTMLESYVLNSVGTRHDMDSL 448 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 ALK K +E+ + T + Y D +T + + Sbjct: 449 ALKYLGHKNISFEEIAGKGKNQLTFNQI----------ELDKAAPYAAEDADITLRLHQM 498 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + I G +D + + + +L++E Sbjct: 499 LWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQSFEIGKRLDELEKEAH 558 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+ LF + L + T T + VL P + + Sbjct: 559 ELA-GEAFNLSSPKQLQVILFEKHELPVIKKTPKGAPSTAEEVLQELAHDYPLPKLIIEH 617 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P R H Sbjct: 618 R-------------------------------GLSKLKSTYTDKLPLMVNADTQRVHTSY 646 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q IT ++DP+ I +R +A++G K+ AD + IE R++A ++ Sbjct: 647 HQAITATGRLSSTDPNLQNIPIRTEEGRKIRQAFVAAKGYKIAAADYSQIELRIMAHLSQ 706 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G D++ T A F V+ A+VT D R K + L Y A +A Sbjct: 707 DKGLLNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIYGMSAF---GLARQ 763 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + H + + +E +M E+ E A E ++ T R + + + Sbjct: 764 LDVPRHEAQHYID-----KYFERFPGVLEYM-ESTREKAAELGYVETLFGR-RLYLPEIN 816 Query: 515 SRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +R +A G A II + V + N + L++ LV+ Sbjct: 817 ARNGASRKAAERAAINAPMQGTAADIIKKAMITVNAWVKAQPANTVRLLMQVHDELVF 874 >gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] Length = 985 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 119/664 (17%), Positives = 218/664 (32%), Gaps = 155/664 (23%) Query: 44 LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 L D + L L +++ V N+ ++R + IP+ I +LA Sbjct: 441 LIDVIKG------LSPWLGSSEHPKVLQNAKYDRLI---FLQYGIPLEGVIMDTLLADYL 491 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCK 162 + S + M + F + +++ + YC Sbjct: 492 --------CDVTHRHSLEAMAK-----REFGFTPTNFNEIVGKDETFKNVSISTASLYCG 538 Query: 163 GDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 DV +TR+++ K +E L EQ L + + RG +D+ L+ Sbjct: 539 MDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKELSIE 598 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSS 265 ++ +++ + + ++L LF + GL + T+T T VL Sbjct: 599 LNKALKNIEKSAYKIAK-TDFNLSSPKQLGEVLFEQLGLDKKKSRRTKTGWSTDANVLER 657 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P V +R S+ P Sbjct: 658 LQGDNPIVPLVIEHR-------------------------------TLSKLLSTYVEALP 686 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 + R H + +Q +T +S+P+ I S +R + EG +L+ AD Sbjct: 687 QLVEAQTGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPREGWQLLSAD 746 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA ++GE +A+ G+D++ T + +T ++R +GK + + Sbjct: 747 YSQIELRILAHLSGEASLQEAYRNGDDVHALTAKIL--LDKESITSNERRLGKTINFGVI 804 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y G Q+ A +TG++ + + N E + + ++ E A+ F+ Sbjct: 805 YGMGV---QRFARSTGVSQSEAKDFL--NRYKERYTNVFSYL----ELQERLALSKGFVE 855 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 T I+ R+R DKN L Sbjct: 856 T------------------------------------ILGRRRH------FHFDKNGLGR 873 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNA 617 +L L + R +L +Q S DI+ M+ Sbjct: 874 LLGKNP-------------LEIDLKLARRAGMEAQQLRAAANAPIQGSSADIIKVAMVKL 920 Query: 618 TKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670 K +++L VHDE+V E P E +++ H M +PL E Sbjct: 921 DKELKNEGLPANLLLQVHDELVLEVDPTATEQVKALVIHTMEKAVL--LNVPLVVEASVG 978 Query: 671 KRYR 674 K + Sbjct: 979 KNWM 982 >gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146] gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146] Length = 930 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 87/512 (16%), Positives = 163/512 (31%), Gaps = 76/512 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 L+ LE+ + + N ++ V+ I + +L N + Sbjct: 406 LQPLLEDEGIAKIGQNLKYDIGVMARY---GITLRGVAFDTMLESYVLNSVAGRHDMDSL 462 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + T + EY D VT ++ + Sbjct: 463 SARHLDHKTITFEEIAGKGKGQLTFNQI----------PLEQASEYAAEDADVTLQLHQH 512 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P+ E L + + G +D A+ +Q + V L+Q+ Sbjct: 513 LWPMLEGESGPSHIFRDIDMPLVPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQQAH 572 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 S G + ++L++ LF + L + T +T + VL + QV Sbjct: 573 SEA-GEPFNLSSTKQLQSILFEKQQLPVLKKTPGGAPSTNEEVLVELAEQGYALPQV--- 628 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L++ ++ P P R H Sbjct: 629 ---------------------------ILEYRTLAKLKSTYTDKLPLMVNPLTGRVHTSY 661 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I +R IA G ++V AD + IE R++A ++G Sbjct: 662 HQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLSG 721 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L+AF G+D++ T A F + V+ DQR K + L Y A +A Sbjct: 722 DKGLLQAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAF---GLARQ 778 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + ++ + + G + + Sbjct: 779 LNIGRGEAQRYMD--LYFERYPGVLAYMERTRQLASDQGYVETLDGRRL-----YLPEIN 831 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +R +A G A KR + Sbjct: 832 ARNGMRRKAAERAAINAPMQGTAADIIKRAMI 863 >gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] Length = 957 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 105/634 (16%), Positives = 202/634 (31%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN DV + N ++ T+ N + + +L + + Sbjct: 434 ELKPLLENADVKKIGQNIKYDLTI---FANHGVQVEGVAFDTMLESYTLNSTGRHNMDEL 490 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E +E+ + T + + A + +Y D VT ++ + Sbjct: 491 AERYLGHKTIEFEEIAGKGKNQLTFDKI----------AIDVASQYAAEDADVTMKLHQV 540 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E L + I G ++ + ++ +L+Q + Sbjct: 541 LAPELDKAPTLVKLFNEIEMPLVEVLSRIERNGVLIEPEKLLAQSAEIEQRLAELEQLVH 600 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T + + Sbjct: 601 SEA-GEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGRGHLVPKLLME 659 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P + R H Q + Sbjct: 660 HR--------------------------GLSKLKSTYTDKLPLMINQKTGRVHTSYHQAV 693 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R I ++G K+V AD + IE R++A +A ++ Sbjct: 694 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFITNKGYKIVAADYSQIELRIMAHLANDEGM 753 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F +A QVT +QR K + L Y +++ G++ Sbjct: 754 IIAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF---GLSNQLGIS 810 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + Q++ V Sbjct: 811 RADAKKYM-----------------------------------------ERYFQRYPAVQ 829 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ + + V ++ GR L ++ ++ Sbjct: 830 QFMTDIRESASE------------KGYVETLF--------------GRRLYLPEIKSS-- 861 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ KA +++ VHDE+V Sbjct: 862 --NAMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELV 914 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++ M +PL AE Sbjct: 915 FEVKEERVEHYSQLIKAEMEKAIQ--LKVPLIAE 946 >gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 958 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 124/706 (17%), Positives = 219/706 (31%), Gaps = 180/706 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 380 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 429 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 430 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 486 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 487 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 533 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 534 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 593 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 Q+ + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 594 QQAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 652 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 653 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 681 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 682 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 741 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 742 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY-- 799 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + Sbjct: 800 -GLAKSLGIDNLSAKTFID----------------------------------------- 817 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 818 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 859 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621 G R+ +N Q + D++ M++ ++ Sbjct: 860 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSDDLLQ 901 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E P+ + + L +M +PL AE Sbjct: 902 SKLIMQVHDELVLEVPEAELDLVKEKLPQIMEKVDEGMLNVPLVAE 947 >gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA] gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA] Length = 935 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 88/550 (16%), Positives = 178/550 (32%), Gaps = 74/550 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 414 IKLILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 471 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + + EY D VT ++ Sbjct: 472 RYLGHETIAFESLAGKGKSQLTFNQI----------PLQQATEYAAEDADVTMKLQQALW 521 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 522 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 581 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 582 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 639 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 640 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 669 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 670 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 729 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 730 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 786 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + F ++ + G +S Sbjct: 787 ISRPDAQKYMD--LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRL-----YLPDINSS 839 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A KR + L + + N+ +++ LV+ Sbjct: 840 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEK 899 Query: 577 RSYLNTTTRQ 586 ++ +Q Sbjct: 900 VAFFREQIKQ 909 >gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190] Length = 975 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 124/706 (17%), Positives = 218/706 (30%), Gaps = 179/706 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 397 NTIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446 Query: 58 ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSA 108 K L N + + N +++ V N I ++ +LA + L Sbjct: 447 DVLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHG 503 Query: 109 LKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + E L L + E C + A EY D Sbjct: 504 LDELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADF 550 Query: 168 TREIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + L + K+ E++ + + G +D A + + E KL Sbjct: 551 ALRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 610 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQ 272 +Q+ + + ++L+ LF + G+ + L +T T + VL P Sbjct: 611 EQQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 669 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + NR A + P P+ Sbjct: 670 PKIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKD 698 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q + +++P+ I VR A +G +V AD + IE R Sbjct: 699 GRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELR 758 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 759 IMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY- 817 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 +A + G++ + + + Sbjct: 818 --GLAKSLGIDNLSAKNFID---------------------------------------- 835 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + +R + + + EQ G RR L LP R+ Sbjct: 836 ----RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRN 876 Query: 568 LVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----G 621 G R+ +N Q + D++ M++ G Sbjct: 877 KNANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIG 918 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 919 SKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 964 >gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] Length = 894 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 112/699 (16%), Positives = 200/699 (28%), Gaps = 176/699 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVH--DPVMPQVLKEA 60 ID ET S + +A ++ F+ + + H +P+ + A Sbjct: 319 IDTETSS--------LDPHA--AELVGFSLAWFEGDRTRAVYVPLGHREGKQIPRDVALA 368 Query: 61 L-----ENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGE 114 L E+ +A N+ F+ + + + TL+ + +A Sbjct: 369 LLGPWLEDGSKAKLAQNAKFDWQI---FWAQGLRPRGLARDTLLESYVLDSTAAHDLDSL 425 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + EL + + Y D V + + Sbjct: 426 AERYLQHRNISYAEL----------TGKGRQARSFAAVDIASATAYAAEDAEVCLRVDAQ 475 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P E L + + G +DV + L++ +D ++ E Sbjct: 476 MWPQIRRHEGLARVFRDIEMPLVEVLARMEWAGVRIDVDVLKRLSEELDTRMATVESEAF 535 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++++T LF + GL + +T + VL+ K Sbjct: 536 A-AAGQRFNLNSPKQIQTILFDKMGLPVLKKTPGGQPSTNEDVLAELAKQADLP------ 588 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R L + G ++ P R R H Sbjct: 589 -------------------------RLILDYRGLAKLKNTYADALPQMIQERTGRVHTHY 623 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + +SDP+ I + +R +A G L+ AD + IE R++A ++G Sbjct: 624 HQAVAATGRLSSSDPNLQNIPVRSDLGRRIRQAFVAEPGHLLISADYSQIELRIMAHLSG 683 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF G D++ T A F + QVT +QR K + L Y +A Sbjct: 684 DAGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTPY---GLAQQ 740 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ K + Sbjct: 741 LGVGQGEA--------------------------------------------KAYMERYF 756 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDV 573 R + + + G RR L LP RS R Sbjct: 757 ERYPGVREYMENTRRLARQQGYVETLFGRR---------------LYLPEIRSQNPARRN 801 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLT 627 R+ +N Q + D++ M+ ++L Sbjct: 802 YAERAAINAPM------------------QGTAADLIKLAMIAVDAWLLAQTDHGRMLLQ 843 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 VHDE++ E P+ + ML M A +PL Sbjct: 844 VHDELILEVPEKAVDAACQMLREKMEGVAELA--VPLTV 880 >gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1] gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1] Length = 930 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 88/550 (16%), Positives = 178/550 (32%), Gaps = 74/550 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + + EY D VT ++ Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLQQATEYAAEDADVTMKLQQALW 516 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + F ++ + G +S Sbjct: 782 ISRPDAQKYMD--LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRL-----YLPDINSS 834 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A KR + L + + N+ +++ LV+ Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEK 894 Query: 577 RSYLNTTTRQ 586 ++ +Q Sbjct: 895 VAFFREQIKQ 904 >gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442] gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442] Length = 930 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 127/705 (18%), Positives = 222/705 (31%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N DI ++ +LA + L L Sbjct: 403 VLGRLKPHLENPTLKKIGQNLKYDQHV---FANYDIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 Q+ + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QQAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNISAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622 G R+ +N Q + D++ M++ G Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNWLSDGIGS 874 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919 >gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017] gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017] Length = 957 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 105/640 (16%), Positives = 204/640 (31%), Gaps = 139/640 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 + L+ LE+ V N+ F+R V + + + +LA P + Sbjct: 418 EGLRPILESDVYPKVLQNAKFDRLVF-QFQGIQL--QGVVFDTMLANYVLNPERSHNLTD 474 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + KEL+ + + + EYC DV T ++ + Sbjct: 475 LSRNYLQITAKSYKELVK-------------KGQTIADLSITQVAEYCGLDVFTTYQLRE 521 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +LE E L + + G +D TL+ ++ + +L+ Sbjct: 522 KLEAELAAIPSLHGLFQEVELPLEAVLAVMETSGVRIDQEYLQTLSTQLEADLQRLEAGA 581 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVF 277 L G + + ++L LF L ++ +T T L + P + Sbjct: 582 YELA-GEIFNLGSPKQLSEILFGRLELDVKKSRKTKLGYSTDAATLEKLQGDHPIIDVLL 640 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R A + P R H Sbjct: 641 EYRTLA-------------------------------KLKSTYVDALPMLVRDDTHRIHT 669 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +Q +T +S+P+ I S +R+ I L+ AD + IE R+LA + Sbjct: 670 DFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRAAFIPESSWILMAADYSQIELRILAHL 729 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + E L+A+ G+D++ T + Q+ ++R + K++ + Y G F A Sbjct: 730 SQEPRLLEAYRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMGPHRF---A 784 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + ++ + + + + + M A+ ++ T R + Sbjct: 785 REAGVKYSEAKDFIQRFY--DRYPEVFAYLQRM----EREAVSQGYVETILGRRR----- 833 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-R 571 Y + D L G++L Sbjct: 834 -------------------------------------YFEFDSRGLKKYR--GKALEELA 854 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----DIVLT 627 +V + +++ R L R +Q S D++ M+ A +++ Sbjct: 855 EVDLSDIKMSSYDRGLLRAAANAP------IQGSSADLIKIAMVQLQAALEPYKSRLLMQ 908 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P + + S + M + +PL AE Sbjct: 909 VHDELVLEVPVDEVDDVRSQIKTTMETALP--LSIPLVAE 946 >gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013] Length = 930 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 128/705 (18%), Positives = 219/705 (31%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDSMLASYIIESHLGHGL 459 Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + G L L + E C + A EY D Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + K Sbjct: 773 -GLAKSLGIDNLSA--------------------------------------------KN 787 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622 G R+ +N Q + D++ M++ G Sbjct: 833 NTNARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 874 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919 >gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031] gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031] Length = 935 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 100/625 (16%), Positives = 193/625 (30%), Gaps = 151/625 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN D+ + N F+ ++ + T++L+ + A Sbjct: 414 IKPILENPDIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 471 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + + + T + EY D VT ++ Sbjct: 472 RYLGHETIAFESIAGKGKGQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 521 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 522 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 581 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 582 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 639 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 640 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 669 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 670 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 729 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 730 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 786 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + Q++ Sbjct: 787 ISRADAQKYMN-----------------------------------------LYFQRYPS 805 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575 V + ++ +A + + + R+ L LP S R G Sbjct: 806 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 847 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630 R +N Q + DI+ M+ + ++++ VHD Sbjct: 848 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 889 Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654 E+V E + F + M + Sbjct: 890 ELVFEVRSEKVAFFREQIKQHMEAA 914 >gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110] gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110] Length = 583 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 206/637 (32%), Gaps = 134/637 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L+ LE+ + V N+ F+R + K I + + +LA P L Sbjct: 45 DSLRTILESKNYPKVFQNTKFDRLIFKHQ---GINLDGVVFDTMLASYVLHPEKSHKLSE 101 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E L + KEL + + EYC D T + Sbjct: 102 LCEQY-LEGITSQNYKEL------------GIGKKQTIADLEIDKVAEYCGMDAYATFLL 148 Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L+ L EQ L + + D G +D L++ ++ + L++ Sbjct: 149 VEPLKNELKQVSSLEKLLLEVEQPLEAVLSIMEDTGILIDTEYLGELSKQLEKDLLILEE 208 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + + G + ++L LF + L+ + +T Sbjct: 209 KAYEVAGG-KFNLGSPKQLGEILFEKLELNRKKSRKT----------------------- 244 Query: 281 MRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ + ++ + D + L++ S+ P + R H Sbjct: 245 ----KTGYSTDHATLDKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDTKTKRIHTNF 300 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q +T +S+P+ I S +R I + LV AD + IE R+LA ++ Sbjct: 301 NQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQ 360 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E L A++ ED++ T F ++T +R +GK + + Y G+ Q+ A Sbjct: 361 EPVLLNAYQNTEDVHTVTAKLLF--EKEKITSQERNLGKTINFGVIYGMGS---QRFARE 415 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + N + + + M+ Sbjct: 416 AGVTAAEGKEFI--NKYRQRYAKVFEYLESMK---------------------------- 445 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ I NG RR Y +NL R + + Sbjct: 446 --------------KEAIANGYVTTILGRRR----YFNFFDDNLYRF----RGHDPQTID 483 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHD 630 N+ +N QL R +Q S DI+ M+ +++L VHD Sbjct: 484 LNQLNINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILNHCQANLLLQVHD 537 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E P + E + + M + +PL E Sbjct: 538 ELVFEIPVKEWEKLENKIKETMENAVK--LTIPLVVE 572 >gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] Length = 928 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 121/695 (17%), Positives = 213/695 (30%), Gaps = 172/695 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID + A + ++ + F H P+ L K LEN Sbjct: 353 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGRLKPHLEN 410 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119 + + N +++ V N I ++ +LA + L L + E L L Sbjct: 411 PALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGLDELSERWLGLE 467 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171 + E C + A EY D + Sbjct: 468 TITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFALRLDAHLRAQM 514 Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+LE E + + + G +D A + + E KL+QE + G Sbjct: 515 DAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 573 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + G+ + L +T T + VL P + NR A Sbjct: 574 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA- 632 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P P+ R H Q + Sbjct: 633 ------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQAVA 662 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I VR A +G +V AD + IE R++A ++G++ + Sbjct: 663 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 722 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ GED++ T A F +AP V+ +QR K + L Y G +A + G++ Sbjct: 723 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 779 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + +R Sbjct: 780 LSAKTFID--------------------------------------------RYFARYPG 795 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578 + + + EQ G RR L LP R+ G R+ Sbjct: 796 VAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNKNANARAGAERA 840 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 +N Q + D++ M++ ++ +++ VHDE+ Sbjct: 841 AINAPM------------------QGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDEL 882 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 V E P+ + + L +M +PL AE Sbjct: 883 VLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 917 >gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617] Length = 929 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 95/512 (18%), Positives = 171/512 (33%), Gaps = 77/512 (15%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ V N F+R VLK DI + +L N + Sbjct: 405 LKPLLEDPQAQKVGQNLKFDRGVLKRY---DIELQGIRFDTMLESYALNSVAGRHDMDTL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + K +E+ + T + A Y D VT ++ + Sbjct: 462 ASRWLNHKTVTFEEIAGKGKNQLTFNQI----------ALEQAAHYAAEDADVTLQLHVK 511 Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P KEQ L + I G + + T +Q + +L+ + Sbjct: 512 MWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAPGILATHSQELGSRLAELELKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L+T LF + G+ T +T + VL+ P + + Sbjct: 572 ELA-GEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEH 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P P R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINPHSGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I +R IA +G ++V AD + IE R++A ++ Sbjct: 660 HQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQ 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF + +D++ T A F V+ +V+ +QR K + L Y A ++ Sbjct: 720 DKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAF---GLSRQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + +E ++M E+ E A + ++ T + + Sbjct: 777 LNIGAGEAKKYMDL-----YFERYPGVLQYM-ESTRELAAQKGYVST-LDGRRLYLPDIK 829 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + +A G A KR + Sbjct: 830 ASNAMRRKAAERAAINAPMQGTAADIIKRAMI 861 >gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710] gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579] gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149] gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33] Length = 929 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 128/705 (18%), Positives = 220/705 (31%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQV----- 56 T+ ID ET + +D A + ++ + F H P+ Sbjct: 352 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQIDLQD 401 Query: 57 ----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 LK LEN + + N +++ V N I ++ +LA + L L Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 458 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 459 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 505 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 506 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELSRQSAELGAELMKLE 565 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE ++ G + ++L+ LF + G+ + L +T T + VL P Sbjct: 566 QEAYAVA-GQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 624 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 625 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 653 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 654 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 713 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 714 MAHLSGDKTLITAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 771 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + Sbjct: 772 -GLAKSLGIDNISAKTFID----------------------------------------- 789 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 790 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 831 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622 G R+ +N Q + D++ M++ G Sbjct: 832 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 873 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 874 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 918 >gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217] gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217] Length = 921 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 105/603 (17%), Positives = 189/603 (31%), Gaps = 99/603 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51 + ID ET S Y D ++ +F + HD Sbjct: 342 KLIAIDTETTSLN---------YM-DAKLVGISFAIEAGEAAYLPLAHDYLDAPSQIDMA 391 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSAL 109 + L+ LE+ + V N ++ + N+ I + +L N + S Sbjct: 392 TALEKLRPLLESDNPAKVGQNLKYD---ISIFANVGIKLKGVHFDTMLESYVFNSVASRH 448 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 G ALK K +++ + K T + Y D +T Sbjct: 449 DMDGLALKYLGHKNISFEDVAGKGAKQLTFNQI----------DLDTAAPYAAEDADITL 498 Query: 170 EIFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L P KE EL + I +G +D L + + + KL Sbjct: 499 RLHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLIDPMLLSQQSDELAQKIDKL 558 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274 + E + G + ++L+ F + + T T + VL P Sbjct: 559 ELEAYEIA-GEKFNLGSPKQLQVLFFEKLAYPIIKKTPKGAPSTAEEVLVELALDYPLPK 617 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R A + P R Sbjct: 618 IILAHRSLA-------------------------------KLKSTYTDKLPLMVNGTTGR 646 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q +SDP+ I +R IA G+K++ AD + IE R++ Sbjct: 647 VHTSYHQANAATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIM 706 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ ++ L AF G+D++ T A F +VT +QR K + L Y A Sbjct: 707 AHLSQDKGLLTAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMSAF--- 763 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A + N + T + ++M+E A E ++ T R + Sbjct: 764 GLAKQLDIPRNEAQTYIDT-----YFARYPGVLQYMEETRA-SAAELGYVSTLFGR-RLY 816 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + R + +A G A II + ++ + + + +++ Sbjct: 817 LPEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIANWIKTETQGEITMIMQVHDE 876 Query: 568 LVY 570 LV+ Sbjct: 877 LVF 879 >gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] Length = 975 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 126/705 (17%), Positives = 214/705 (30%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 398 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 448 VLGHLKPYLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 504 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 505 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 551 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 552 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 611 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 Q+ + + ++L+ LF + G+ + L +T T + VL P Sbjct: 612 QQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 671 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 700 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 760 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGL 819 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 K L+ K Sbjct: 820 AKSLGIDNLSA-----------------------------------------------KN 832 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 833 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 877 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622 G R+ +N Q + D++ M++ G Sbjct: 878 NTNARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 919 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 920 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVGGGLLDVPLVAE 964 >gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] Length = 1024 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 117/641 (18%), Positives = 196/641 (30%), Gaps = 142/641 (22%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSAL 109 + LK LE+ V V N ++ VL I + + T++++ + Sbjct: 492 EAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH---GIEVRPYDDTMLISYVLDAGKGSH 548 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A + + ++ R Y D VT Sbjct: 549 GMDELARRHLGHQPITFADV----------TGTGRTKVTFDRVPLDKATAYAAEDADVTL 598 Query: 170 EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ ++P + E+ L + + G VD + L+ +L+ Sbjct: 599 RLWRLMKPRLAAERRATVYETLERPLVPVLARMESCGIRVDRGMLSRLSGDFSQSLARLE 658 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274 E++ + G S +++ LF + GL T + T +L Sbjct: 659 AEIQEMA-GESFSVSSPKQIGDILFGKFGLPGAKKTPSGQWATPATLLEELAGQGHALPK 717 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ R S+ +R Sbjct: 718 KILEWRQL-------------------------------SKLKSTYTDTLQEHADRETNR 746 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H T +SDP+ I +R +A EG KL+ AD + IE R+L Sbjct: 747 VHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADEGHKLISADYSQIELRLL 806 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A +AF G D++ T + F V Q+T D R K + + Y A Sbjct: 807 AHIADIPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINFGIIYGISAF--- 863 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A G+ A F + E P I + +KK Sbjct: 864 GLADRLGIPQGEAAA----------------FIKQYFERFP-------GIRAYIDDIKKT 900 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R K V+ L+ + Y + NN P R+ V Sbjct: 901 CRDK-GYVTTLFGRVCH-----------------------YPQIRSNN-----PQERASV 931 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R +N + G + I +A+ R EG + A ++L VH Sbjct: 932 ------ERQAINAPIQ---------GSAADIIRRAMVR---MEGALAAAGLTTRMLLQVH 973 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 DE+V E PD + E ++ +M P A L PL E Sbjct: 974 DELVFEAPDDEVERALPIIARVMEEAPHPAVQLRVPLAVEA 1014 >gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021] gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021] Length = 743 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 100/625 (16%), Positives = 193/625 (30%), Gaps = 151/625 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 222 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 279 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + EY D VT ++ Sbjct: 280 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 329 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 330 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAYAL 389 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 390 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 447 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 448 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 477 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 478 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 537 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 538 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 594 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + Q++ Sbjct: 595 ISRPDAQKYMD-----------------------------------------LYFQRYPS 613 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575 V + ++ +A + + + R+ L LP S R G Sbjct: 614 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 655 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630 R +N Q + DI+ M+ + ++++ VHD Sbjct: 656 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 697 Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654 E+V E + F + M + Sbjct: 698 ELVFEVRSEKVAFFREQIKQHMEAA 722 >gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] Length = 924 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 89/539 (16%), Positives = 166/539 (30%), Gaps = 78/539 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 L+ L++ + + ++ VL+ + + + +L N + Sbjct: 399 DALRPVLQDPAKKKLGQHGKYDLHVLRRH---GVDVQGYHDDTMLESFVLNSTATRHDMD 455 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ + +++ + K P + Y D +T + Sbjct: 456 SLALRYLGYSTIKFEDVAGKGAKQ----------IPFSQVGIDEASRYAAEDADITLRLH 505 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L+P E L + TI G +D +Q + Q+ Sbjct: 506 RALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANGVRIDTDELRRQSQDLSSRMLAAQQK 565 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVF 277 L G + ++L+ LF E L +T + L + + Sbjct: 566 ATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIAEQHELP---- 620 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R L++ G ++ P P R H Sbjct: 621 ---------------------------RVILEYRGLAKLRSTYTDKLPEMVNPETGRVHT 653 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +SDP+ I +R +A EG +L+ AD + IE R++A + Sbjct: 654 SYHQSGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPEGCQLLAADYSQIELRIMAHL 713 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + ++AFE G D++ T A F +VT ++R K + L Y A +A Sbjct: 714 SEDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAF---GLA 770 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ V + +F M++ + + G Sbjct: 771 RNLGIDRGQAQDYV--ALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRL-----YLND 823 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVY 570 H+R L +A G A KR V + +D ++L LV+ Sbjct: 824 IHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVF 882 >gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895] Length = 928 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 81/471 (17%), Positives = 153/471 (32%), Gaps = 72/471 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 ++LK LE+ V N ++R VL+ N I + +L N + Sbjct: 403 ELLKPLLEDEKARKVGQNLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMD 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + K +E+ + T + A G Y D VT ++ Sbjct: 460 SLSERWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLH 509 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ P + E L + + G +D A+ H ++ + + +L+++ Sbjct: 510 LKMWPELQQYKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKK 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 570 AHEIA-GEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 629 EYR-------------------------------GLAKLKSTYTDKLPLMINPKTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +T ++DP+ I +R IA + + AD + IE R++A + Sbjct: 658 SYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPQDYVIASADYSQIELRIMAHL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 718 SRDKGLLTAFAEGKDIHRATAAEVFGLPLESVTAEQRRSAKAINFGLIYGMSAF---GLA 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 + + E + + + E + G Sbjct: 775 RQLNIPRKEAQKYMD--LYFERYPGVLEYMERTRAQAKERGYVETLEGRRL 823 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 Q + DI+ M+ K D +++ VHDE+V E D + + ++ LM Sbjct: 849 QGTAADIIKRAMIAVDKWLQDEQPRVRMIMQVHDELVFEVHKDDLDVVSKKIHQLME 905 >gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] Length = 926 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 95/505 (18%), Positives = 156/505 (30%), Gaps = 77/505 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 + LK LE+ V N ++ +VL I + +L + + S Sbjct: 401 EKLKPYLEDPAFPKVGQNLKYDMSVLAQH---GISLRGITFDTMLESYVLDSVASRHDMD 457 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL ++ + ++ + T + A G Y D +T + Sbjct: 458 SLALNYLGEETIKFADVAGKGAAQLTFNQV----------ALDQAGPYAAEDADITLRLH 507 Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L + I G VD L +Q + +L+ E Sbjct: 508 QTLWPRVAAEPTLTKVFEEIELPLVPVLSRIERTGALVDDTLLFQQSQELSARLGELETE 567 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 L G + ++L LF + + + T T + VL P + Sbjct: 568 AWELA-GQQFNLASPKQLGEILFEKLQIPVLKKTAKGAPSTKEEVLQELALDYPLPKVLL 626 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R G ++ P R H Sbjct: 627 EHR-------------------------------GLAKLKSTYTDKLPTMINSVTGRIHT 655 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q T +SDP+ I VR +A+ G KLV AD + IE R++A + Sbjct: 656 SYHQSGTATGRLSSSDPNLQNIPIRSAEGRRVRQAFVAAPGCKLVAADYSQIELRIMAHL 715 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + L AF G+D++ T A F V +VT DQR K + L Y A +A Sbjct: 716 SEDPSLLAAFSAGQDIHRATAAEVFGVENEEVTIDQRRSAKAINFGLIYGMSAF---GLA 772 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+N A ++ + N A E F+ T R + + Sbjct: 773 RQLGINRKQAAEYIELYFTRYP------GVQNYMNNIRHSAAEQGFVETVFGR-RLYLPE 825 Query: 513 KHSRVSELWNELHQAFEQTIENGKA 537 ++ + G A Sbjct: 826 INASNGMRRQAAERTAINAPMQGTA 850 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 20/110 (18%) Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619 GR L ++ + + R+ +Q + DI+ M+N Sbjct: 818 GRRLYLPEI--------NASNGMRRQAAER-TAINAPMQGTAADIIKLAMINVHNWLETS 868 Query: 620 -AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL-PLKAE 666 I++ VHDE+V E P+++ E L LM S A+ L PL + Sbjct: 869 DLTSKIIMQVHDELVLEVPESEMEEVQKGLNDLMESA---AELLVPLVVD 915 >gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE] gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE] Length = 930 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 100/625 (16%), Positives = 193/625 (30%), Gaps = 151/625 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + EY D VT ++ Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAYAL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQ 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + Q++ Sbjct: 782 ISRLDAQKYMD-----------------------------------------LYFQRYPS 800 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575 V + ++ +A + + + R+ L LP S R G Sbjct: 801 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630 R +N Q + DI+ M+ + ++++ VHD Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 884 Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654 E+V E + F + M + Sbjct: 885 ELVFEVRSEKVAFFREQIKQHMEAA 909 >gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506] gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506] Length = 981 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 112/699 (16%), Positives = 210/699 (30%), Gaps = 168/699 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---------VHDPVMPQVL------- 57 +D G+ D ++ F+ + + ++P + Sbjct: 396 VDTETTGLDPMQAD--IVGFSLATAPNEACYVPLSHKGGDEGLFSEGLLPDQIPIPDAVA 453 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAV 112 K +E+ V + N ++ +LK +++ + T++++ P + + Sbjct: 454 AIKPLMEHPGVLKIGQNLKYDWLILKR-LGIELGPYD--DTMLVSYVLDAGASPHGMDPL 510 Query: 113 GEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 L + K EE C + +DR A +Y D VT + Sbjct: 511 SMRWLGHTPIKFEEV-------CGKGKGQICFDRA------AIDKATDYAAEDADVTLRL 557 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ L+P + E + L + + +RG +D + L+ +L+ E Sbjct: 558 WRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGITIDRQMLSRLSGEFAQGMGRLEAE 617 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQV 276 + + G + ++L LF + + T T T VL + ++ Sbjct: 618 ISEMA-GETFNPGSPKQLGDILFGKMQIPGGRKTPTGAWSTGADVLEELAEQGHELPRRI 676 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R + P R H Sbjct: 677 LDWRQL-------------------------------QKLKSTYTDALPTYVNKETGRVH 705 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 T +S+P+ I +R IA+ G KLV AD + IE R+LA Sbjct: 706 TSFALAATTTGRLSSSEPNLQNIPVRTEEGRKIRKAFIAAPGHKLVSADYSQIELRLLAE 765 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A +AF+ G D++ T + F V + + R K + + Y A + Sbjct: 766 IADTPSLRQAFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF---GL 822 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A+ + +K E + + + EH + G Sbjct: 823 ANQLSIPREEAGAYIK--RYFERFPGIRAYMDETRNFAREHGYVETLFG----------- 869 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +R P + K PS R+ R Sbjct: 870 ------------------------------RRCHYPDISAKN---------PSIRAFNER 890 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 N R G + I +A++R + + ++L VHDE Sbjct: 891 AAINARL---------------QGSAADIIRRAMAR---MDAALEKAGLSARMLLQVHDE 932 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++ E PD + ++ M P A L PLK + Sbjct: 933 LIFEVPDDEIAATIPVVRETMELAPFPAVALKVPLKVDA 971 >gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG] gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG] Length = 930 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 99/625 (15%), Positives = 193/625 (30%), Gaps = 151/625 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + EY D VT ++ Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G +V AD + IE R++A ++G+Q Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHLSGDQ 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + Q++ Sbjct: 782 ISRADAQKYMN-----------------------------------------LYFQRYPS 800 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575 V + ++ +A + + + R+ L LP S R G Sbjct: 801 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630 R +N Q + DI+ M+ + ++++ VHD Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 884 Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654 E+V E + F + M + Sbjct: 885 ELVFEVRSEKVAFFREQIKQHMEAA 909 >gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002] gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002] Length = 973 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 127/686 (18%), Positives = 215/686 (31%), Gaps = 142/686 (20%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVLKEALENTDVT 67 D G+ D+ I +G D + H + Q LK LE Sbjct: 385 DTETTGLDPREVDLVGIGCCWGRDPGNIAYIPIAHHNGNQLEKTQIFQALKPILETEKYP 444 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 V N+ F+R + I + + +LA P L+ + Sbjct: 445 KVFQNAKFDRAIFAHQ---GISLAGVVFDTMLASYVLHPE------MKHNLTDLSLRYLG 495 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----------EP 177 +IA+ + + + + EYC DV T + ++L E Sbjct: 496 NIIAK----SYKDLGLTKKQTIADLEISVAAEYCGLDVYTTYLVCQKLKVELKDYPDLEK 551 Query: 178 LSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L K E L + + + G +D L + + + T L+ + + + Sbjct: 552 LLEKVETPLEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKAYNAAD-ERFNLNSP 610 Query: 237 EKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + GL +T VL + P + R A Sbjct: 611 KQLGEILFEKLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYILEYRTLA-------- 662 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + P P+ R H + +Q +T + Sbjct: 663 -----------------------KLKSTYIDALPTLVSPKTDRIHTDFNQTLTSTGRLSS 699 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S+P+ I S +R I E LV AD + IE R+L ++ E L+A++ GE Sbjct: 700 SNPNLQNIPVRTEFSQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPILLQAYQAGE 759 Query: 407 DLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T F+ P VT +R IGK++ + Y GA Q+ A G++ Sbjct: 760 DVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGMGA---QRFAREAGVSKEEGRAF 816 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + E + AI ++ T +R R+ +S EL Sbjct: 817 ID------RYHERYAKVFEYLELVKKQAIAQGYVSTILQR-----RRNFDFISNCLIELK 865 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + I+ SL Y Sbjct: 866 GSDPKAID-------------------------------LDSLDYA----------YNDA 884 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD- 640 QL R +Q S DI+ M+ + ++L VHDE+V E P + Sbjct: 885 QLLRAAANAP------IQGSSADIIKVAMIQIHELLKDYQARLLLQVHDELVFEMPPEEW 938 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666 E S + M +PL + Sbjct: 939 EELGSKIKTTMEQAVP--LSIPLVVD 962 >gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2] gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2] Length = 1000 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 114/632 (18%), Positives = 202/632 (31%), Gaps = 136/632 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113 LK LE+ V HN +++ VL +D+ CT+ ++ + + + Sbjct: 474 LKGVLEDKGTLKVGHNVKYDQLVLARH-GIDVAPFD--CTMCMSYALDAGKNGHGMDELS 530 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L L Q + E+ + T + + A Y D VT +++ Sbjct: 531 -VLHLGHQPI-AFSEVTGKGKGKVTFDKV----------ALEPATHYAAEDADVTLRLWQ 578 Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P + E + L + + RG +D A+ L+ +++ E+ Sbjct: 579 VLKPRLAAEGRTTVYETLERPLIAVLARMESRGISIDKAMLARLSSEFAQGAARIEDEIA 638 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 L G + +++ LF + GL T T ++ + +A + Sbjct: 639 ELA-GERLNVGSPKQMGDILFGKMGLPGGTKTATGMWSTKATALEELAEAGHKLPQK--- 694 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 L++ S+ P P+ R H Sbjct: 695 -----------------------ILEWRQLSKLRSTYTDALPNFVNPQTRRVHTSYALAA 731 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R +A EG LV AD + IE R+LA +A Sbjct: 732 TTTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAEEGNLLVSADYSQIELRLLAEIAEIPAL 791 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G D++ T + FNV + + R K + + Y A +A+ G+ Sbjct: 792 RTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINFGIIYGISAF---GLANQLGIP 848 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +K + + R E E ++ T R R + + Sbjct: 849 REEAGQYIK------RYFERFPGIRDYMEETKTFCREHGYVETLFGR-----RCHYPEI- 896 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 A + PS R+ R N R Sbjct: 897 --------AAKN--------------------------------PSIRAFNERAAINARL 916 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 G + I +A+ R E + K ++L VHDE+V E P+ Sbjct: 917 ---------------QGTAADIIRRAMIR---MEPALEKAKLSARMLLQVHDELVFEVPE 958 Query: 639 TD-EFNASMLYHLMTS--NPSWAKGLPLKAEG 667 + + ++ M + P+ A +PLK + Sbjct: 959 GEADATIPVVRQCMETASAPAVALAVPLKVDA 990 >gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] Length = 930 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 100/625 (16%), Positives = 192/625 (30%), Gaps = 151/625 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN + + N F+ ++ + T++L+ + A Sbjct: 409 IKPILENPNSHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + EY D VT ++ Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 577 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 725 GLISAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + Q++ Sbjct: 782 ISRADAQKYMN-----------------------------------------LYFQRYPS 800 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575 V + ++ +A + + + R+ L LP S R G Sbjct: 801 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 842 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630 R +N Q + DI+ M+ + ++++ VHD Sbjct: 843 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 884 Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654 E+V E + F + M + Sbjct: 885 ELVFEVRSEKVAFFREQIKQHMEAA 909 >gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99] gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99] Length = 917 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 120/694 (17%), Positives = 221/694 (31%), Gaps = 169/694 (24%) Query: 4 LFIDFETRSP---IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKE 59 L+ID T + ID + Y E ++ +F + HD P+ L + Sbjct: 329 LWIDKLTNADLIAIDTETTSLN-YME-AKLVGISFAIEAGKAAYLPLGHDYLDAPKQLDQ 386 Query: 60 A---------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSA 108 A LEN ++ V N ++ + N+ I + +L N + + Sbjct: 387 AEALAKLKPLLENPELKKVGQNLKYD---ISIFANVGIKLQGIAFDTMLESYVFNSVATK 443 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 ALK K +E+ + K T + + Y D +T Sbjct: 444 HNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQI----------DLEIAAPYAAEDADIT 493 Query: 169 REIFKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P KE +L + I G +D + ++ + + Sbjct: 494 LRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQSEELARTIDE 553 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273 L+Q+ + G + ++L+ F + G + T T + VL P Sbjct: 554 LEQKAFEIA-GEKFNLSSPKQLQALFFEKLGYPIIKKTPKGAPSTAEDVLVELALDYPLP 612 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + +R A + P + Sbjct: 613 KIILQHRSLA-------------------------------KLKSTYTDKLPLMVNAQSG 641 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q +S+P+ I +R IA EGKK++ AD + IE R+ Sbjct: 642 RIHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAREGKKVLAADYSQIELRI 701 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ L AF G+D++ T A F+V +VT +QR K + L Y A Sbjct: 702 MAHLSQDKGLLTAFAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMSAF-- 759 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A ++ +A+ + + +P V K Sbjct: 760 -GLAKQLDISR----------------PEAQKYIDTYFKRYP--------------GVLK 788 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + + ++L + + +R +P + KD+N + Sbjct: 789 YMEETRAEAADLGY-------------VSTLYGRRLYLPAI---KDRNAMRRQ------- 825 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAG 621 R+ +N Q + DI+ + M+N T+ Sbjct: 826 -----AAERAAINAPM------------------QGTAADIIKKAMINIAHWIATETRGE 862 Query: 622 YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN 654 ++++ VHDE+V E D E + LM Sbjct: 863 IEMIMQVHDELVFEVDSDKAEEMREKVCQLMADA 896 >gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] Length = 928 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 104/605 (17%), Positives = 188/605 (31%), Gaps = 90/605 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENT 64 DL + Y E ++ D H P+ L A E+ Sbjct: 355 DLETTSLN-YME-ADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRASVLAALKPLWEDP 412 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + N ++ +VL DI + + +LA N + ALK +K Sbjct: 413 AKAKIGQNLKYDISVLARY---DIEVAGRLEDTMLASYVLNATATRHDMDSLALKYLGEK 469 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 +E+ + K T + + A Y DV +T + + L P Sbjct: 470 TISFEEIAGKGAKQLTFDQI----------ALEQAAPYACEDVDITLRLHRELRPRVDGE 519 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L E L + + G +D H ++ ++ +L+ L G Sbjct: 520 GRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSRELEKRLRELETRAYELA-GREF 578 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF E + + T T + VL P + +R Sbjct: 579 NLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVIIEHR------- 631 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P R H Q +T Sbjct: 632 ------------------------GFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATG 667 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R +A G ++V AD + IE R++A ++G++ L AF Sbjct: 668 RLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAF 727 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A F VA V+ +QR K + L Y A + + N Sbjct: 728 AEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSA---WGLGRQLHIERNQA 784 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + ++ R+M E A +D ++ T R + + +++ Sbjct: 785 QTYID-----RYFDRYPGVARFM-ERIRAQAADDGYVETVFGR-RLYLPEINAQNRTRRQ 837 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLN 581 + G A K + + ++ + +++ LV+ Sbjct: 838 AAERTAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEAQVDAFT 897 Query: 582 TTTRQ 586 RQ Sbjct: 898 DAVRQ 902 >gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII] gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII] gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866] Length = 935 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 86/550 (15%), Positives = 178/550 (32%), Gaps = 74/550 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 414 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 471 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + + + T + EY D VT ++ Sbjct: 472 RYLGHETIAFESIAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 521 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 522 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQAYAL 581 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 582 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 639 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 640 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 669 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 670 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 729 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ ++T +QR K + L Y A ++ G Sbjct: 730 GLINAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIYGMSAF---GLSRQLG 786 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + F ++E + G +S Sbjct: 787 ISRADAQKYMD--LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRL-----YLPDINSS 839 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A KR + L + + ++ +++ LV+ Sbjct: 840 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPDIEMIMQVHDELVFEVRSEK 899 Query: 577 RSYLNTTTRQ 586 ++ +Q Sbjct: 900 VAFFREQIKQ 909 >gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] Length = 920 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 111/640 (17%), Positives = 200/640 (31%), Gaps = 155/640 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 LK LE++ V N ++R VL N I ++ +L N + Sbjct: 396 QLKPLLEDSSRAKVGQNLKYDRNVLA---NHGIELNGIQFDTMLESYVLNSTATRHDMDS 452 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A K + +++ + K T + + G Y D +T ++ + Sbjct: 453 LARKYLDVGTIKFEDIAGKGAKQLTFNQI----------QLQQAGPYAAEDADITLQLHE 502 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P + E L + I G V L + + + +L++E Sbjct: 503 VLWPKLAAIDSLMSVFQTIELSLVPVLSRIERNGALVSRDLLNKQSAELGTRLQQLEKEA 562 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + ++L LF + L + T T + VL+ P Sbjct: 563 HELA-GEAFNLSSPKQLGHILFDKLELPVIKKTPKGAASTAEEVLAELALDYPLP----- 616 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R +++ G S+ P R H Sbjct: 617 --------------------------RILMEYRGLSKLKSTYTDKLPQMISEVTGRIHTS 650 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T +SDP+ I VR +A +G K+V AD + IE R++A ++ Sbjct: 651 YHQAVTATGRLSSSDPNLQNIPIRTEEGRKVRQAFVARDGYKIVAADYSQIELRIMAHLS 710 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + LKAF G+D++ T A F + QV+ +QR K + L Y A K Sbjct: 711 QDNGLLKAFAEGKDIHQATAAEVFGLELEQVSTEQRRRAKAINFGLIYGMSAFGLAKQ-- 768 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 +A+ + +P + D T + Sbjct: 769 -----------------IDVGRHEAQEYIDTYFSRYP--GVRDYMDNTRAD--------- 800 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 A +R V +Y GR L ++ Sbjct: 801 --------------------------AAERGYVETLY--------------GRRLYLPEI 820 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 + + R+ +Q + DI+ + M++ + +++ Sbjct: 821 --------NASNGMRRQAAER-TAINAPMQGTAADIIKKAMVDVDRWLLESDVDGQMIMQ 871 Query: 628 VHDEIVCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E + + ++ S + LM+ +PL + Sbjct: 872 VHDELVFEVAEPSLDYLVSSVNDLMSGAVV--LDVPLIVD 909 >gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605] gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605] Length = 986 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 113/638 (17%), Positives = 204/638 (31%), Gaps = 147/638 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L +++ N+ ++R +L I + + +LA L Sbjct: 453 LASSNHPKTLQNAKYDRLIL---LRHGIALEGVVIDTLLADY---------------LRD 494 Query: 121 QKMEEGKELI--ARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----- 172 + G EL+ F + + L + + YC DV VTR + Sbjct: 495 ASAKHGLELMAEREFGFQPTSFTDLVGKKQTFADVPLEPASLYCGMDVHVTRRLALLLRH 554 Query: 173 -------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + L L EQ L + + G +DV L++ + +L+ + ++ Sbjct: 555 QLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTLQQLESDAKA- 613 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQAIQVFNNR 280 G+ + ++L LF GL + T+T T VL P V ++R Sbjct: 614 AAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLGNDHPVVPLVLDHR 673 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + S+ P R H + + Sbjct: 674 VL-------------------------------SKLKSTYIDALPQLVEAETGRVHTDFN 702 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +S+P+ I S +R + EG L+ AD + IE R+L ++GE Sbjct: 703 QAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQIELRILTHLSGE 762 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +A+ G+D++ T + +V+ D+R +GK + + Y GA Q+ A T Sbjct: 763 KVLQEAYRGGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGA---QRFARET 817 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + + + F E A+ ++ T R + Sbjct: 818 GVSQSEAKEFL--VKYKQRYPKVFAFL----ELQERLALSRGYVETILGRRRP------- 864 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 D+N L +L ++ Sbjct: 865 -----------------------------------FHFDRNGLGRLLGKD----PLEIDL 885 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629 + + Q R +Q S DI+ M+ A ++L VH Sbjct: 886 DVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALLRQGLPAQLLLQVH 939 Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+V E PD E ++ M +PL E Sbjct: 940 DELVLEVAPDALETTRDLVVRTMEQAFE--LSVPLVVE 975 >gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] Length = 918 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 117/646 (18%), Positives = 205/646 (31%), Gaps = 114/646 (17%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53 + ID ET S Y E ++ +F + HD Sbjct: 341 IAIDTETTSLN---------YME-AELVGLSFATEAGKAAYLPLAHDYLDAPLQIDKASA 390 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 + L+ LE V N ++ ++L N I + +L N + S Sbjct: 391 LEKLRPILEGDTPQKVGQNLKYDMSILA---NAGISLKGIRFDTMLESYVFNSIASRHDM 447 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 G ALK K +E+ + K T + + G Y D +T + Sbjct: 448 DGLALKYLGHKNISFEEVAGKGAKQLTFNQV----------HLDIAGPYAAEDADITLRL 497 Query: 172 FKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P KE EL + + +G +D L + + + L+ Sbjct: 498 HQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQQSGELAKKLDDLEN 557 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + + ++L+T F + G ++ T T + VL P + Sbjct: 558 KAYEIA-EEKFNLASPKQLQTLFFEKLGYPIKKKTPKGAPSTAEDVLIELALDYPLPKVI 616 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R A + P R H Sbjct: 617 LEHRSLA-------------------------------KLKSTYTDKLPLMVNATTGRVH 645 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q +S+P+ I +R IA G+K++ AD + IE R++A Sbjct: 646 TSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAH 705 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ + L AF G+D++ T A F V +VT +QR K + L Y A + Sbjct: 706 LSQDAGLLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAF---GL 762 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A + N + T + ++M+E A E ++ T R + Sbjct: 763 AKQLDIPRNEAQKYIDT-----YFARYPGVLKYMEETRA-IAAELGYVSTLFGR-RLYLP 815 Query: 512 QKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + + R + +A G A II + + + + + L++ LV Sbjct: 816 EINDRNAMRRQAAERAAINAPMQGTAADIIKKAMIAIHQWINQDTQGEITLIMQVHDELV 875 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI--LAEG 613 + Q T K+ + + QA S D+ LAE Sbjct: 876 F----------EVDEAQAETLKT---KVCDLMAQAASLDVTLLAEA 908 >gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822] gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822] Length = 966 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 119/692 (17%), Positives = 219/692 (31%), Gaps = 149/692 (21%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMPQV-----LKE 59 D ET S + + +G V +PQ L+ Sbjct: 381 DTETTSLDPIEATLVGI--------GCCWGHQSTDVAYIPLNHTEGEQLPQTEVLAALRS 432 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEAL 116 LE+ N+ F+R VL + I + + +LA P L + Sbjct: 433 ILESDQYPKAFQNTKFDRIVL---LHQGIQLAGVVFDTMLASYVLRPEDSHKLSDLCHRY 489 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL- 175 L + K K+L + + YC D T ++ +L Sbjct: 490 -LENIKSLNYKDL------------EIPKTQTIANLDISRVAHYCGMDAYATFKLVPKLL 536 Query: 176 ----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L EQ L + + + G +D +Q ++ + +++ Sbjct: 537 AELEKAPDLYNLLIKVEQPLEPVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYE- 595 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF + L + + Sbjct: 596 AAGESFNLGSPKQLSYILFDKLKLSKSKSRKI---------------------------K 628 Query: 286 SAVLKLNTLVEAMNSDGRLR-GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + +E + + R+ L+ ++ P P+ R H + +Q +T Sbjct: 629 TGYSTDHATLEKLQGEDRIIDYILEHRTLAKLKSTYVDALPALVHPKTGRVHTDFNQTVT 688 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I S +R I EG LV AD + IE R+LA + E + Sbjct: 689 TTGRLSSSNPNLQNIPIKTEFSRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLLV 748 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A++ +D++ T F+ A +T ++R+IGK + + Y GA Q+ A GL++ Sbjct: 749 EAYQNYQDVHRVTAQLLFDK--ANITSEERSIGKTINFGVIYGMGA---QRFARAFGLSV 803 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E++ E + AI F+ T R R E Sbjct: 804 QEGKEFI------EKYHQKYARVFEYLERVKKEAIAKGFVTTILGR---------RRYFE 848 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +++ L R ++ + Sbjct: 849 FFDD-------------------------------------KLNRLRGEKPENLDLKKLE 871 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIVCE 635 LN + QL R +Q S DI+ M+ + ++L VHDE+V E Sbjct: 872 LNFSDAQLLRAAANAP------IQGSSADIIKIAMVQLQEILQQYQARLLLQVHDELVFE 925 Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 P + + + + M + + +PL E Sbjct: 926 VPPHEWEELEVKIKNTMENAVN--LTVPLVVE 955 >gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] Length = 913 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 113/644 (17%), Positives = 203/644 (31%), Gaps = 157/644 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 + LK LEN V N ++ + N I + TL+ + Sbjct: 389 KKLKSWLENPAKKKVGQNLKYDSHI---FANYHIHLQGIAHDTLLESYVLESHRRHDMDS 445 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + +L K +E+ C + +D + Y D +T ++ + Sbjct: 446 LSERLLDYKPISYEEI----CGKGASQIGFD------QIELDCATRYAAEDADITFQLHE 495 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P K E + + Q + G +D L + + ++ +L+++ Sbjct: 496 NMWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQSSELALKIDELEKKA 555 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278 S+ + ++L LF + GL L +T + VL P + Sbjct: 556 YSVA-EQSFNLNSPKQLAEILFDKLGLPLVKKTPSGAPSTSEEVLEKLALDYPLPKIIL- 613 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 F G ++ P P R H Sbjct: 614 ------------------------------DFRGMAKLKSTYTDKLPRMINPETGRVHTN 643 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + ++DP+ I +R IA G +V AD + IE R++A ++ Sbjct: 644 YAQAVAVTGRLASNDPNLQNIPVKTEEGRRIREAFIAPAGCYIVSADYSQIELRIMAHLS 703 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + LKAF G+D++ T + F++AP +VT +QR KV+ L Y A AS Sbjct: 704 DDPGLLKAFREGQDVHKATASEIFDIAPLEVTPEQRRYAKVINFGLIYGMSAFGV---AS 760 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ + + + +M + +++ R Sbjct: 761 NLGISRTDAKNYID-----RYFRRYPGVAEYM------------------DAIRQTAR-- 795 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572 Q + +T+ + L LP S R Sbjct: 796 -----------EQGYVETVFGRR-----------------------LWLPEINSPNGPRR 821 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVL 626 R+ +N Q + DI+ M+ + +++ Sbjct: 822 QAAERAAINAPM------------------QGTAADIIKLSMIAVNDWIENEQLESKLIM 863 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 VHDE+V E PD + E L LM S +PL A+ G+ Sbjct: 864 QVHDELVLEVPDKELERVRKRLPELMGQVAS--LKVPLIADVGF 905 >gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145] gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145] Length = 920 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 112/678 (16%), Positives = 212/678 (31%), Gaps = 165/678 (24%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56 D ET + +D + A ++ F+ FD HD V+ Sbjct: 351 DTET-TSLD------YRIA---QIVGFSVAFDAQNAYYVPLAHDYEGAPEQLNREVILAQ 400 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 +K LE+ V + H+ ++ VL+ N I + W +LA N + + Sbjct: 401 IKPILEDESVKKIGHHLKYDAHVLE---NHGIHLAGWYFDTMLASYVLNSVATRHGMDDV 457 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A S +++ + K +T + Y D VT +++ Sbjct: 458 ARLYLSHLTTTYEQVAGKGAKQKTFNQI----------PLETAAHYAAEDAHVTYRLYEV 507 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L L + E + + + + G +D+A L L+ ++ Sbjct: 508 LSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQNLENQIM 567 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G + +++ LF + GL + T S+++ + + Sbjct: 568 EIA-GESFNVSSPKQVGEVLFEKLGL---KGGKKTTTGQYSTSESVLEKIEHPIAQL--- 620 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 L++ G S+ Q P R H Q + Sbjct: 621 -----------------------ILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQAL 657 Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T ++DP+ I I +R +A EG+ L+ AD + IE R++A ++ ++ Sbjct: 658 TATGRLSSTDPNLQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEAL 717 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF G+D++ T A +A VT DQR K + L Y + T Sbjct: 718 LDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTR-- 775 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++++++ + +P Sbjct: 776 -----------------QESQDYIKQYFHRYP---------------------------- 790 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +++ + + + +E G + GR L D+ Sbjct: 791 GIYDYMQRTRQVALEQG-----------------------FVETLLGRRLYTPDID---- 823 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVC 634 N R+ L Q + DI+ M+ K ++L VHDE+V Sbjct: 824 ARNMMVRKAAERAAINAPL-----QGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVF 878 Query: 635 ETPDTDEFNAS-MLYHLM 651 E + + L +M Sbjct: 879 EVDEDIADELAPKLAEVM 896 >gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32] gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32] Length = 891 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 102/606 (16%), Positives = 184/606 (30%), Gaps = 92/606 (15%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55 ID ET S ++ +F F DH H + Q Sbjct: 317 IDLETTSLNPFE----------AEIVGISFSFSDHQAYYIPVAHHYLGVPDQLSLAHVLQ 366 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 L+ L + + + N ++ VL+ I + C +LA P S+ Sbjct: 367 ALRPLLLDPAIKKIGQNIKYDYQVLRRA---GIEMEGIWCDTMLASYLLNPNRSSHGLNA 423 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A++L KM ++ +N Y D T + K Sbjct: 424 LAVELLDHKMISYADVAG--------SGKDQKNFAQ--VEVEKASIYSCEDADATWLLHK 473 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 P + E L + + G +D+ L L+ + +L++E+ Sbjct: 474 LFLPQIEESGMERLLFELEMPLVKILAEMELYGVKLDLVLLQKLSAGFGSQLAELEREIF 533 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF L T+T + ++L + Sbjct: 534 QCA-GTTFNINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVDELERLAAE--------- 583 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + GRL LQ+ S+ P R H +Q Sbjct: 584 -----------------HEIGRL--ILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYNQ 624 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T+ +S+P+ I +R IA EG ++ AD + IE RVLA ++ ++ Sbjct: 625 AVTNTGRLSSSEPNLQNIPIRSEEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDR 684 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 AF ED++ T A F + P VT + R K + + Y G + A G Sbjct: 685 VFCDAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTINFGVIYGQGPFSL---AKELG 741 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + A F +G +S Sbjct: 742 VSTKVAKEFID--NYFDRHAGARVFLDGCVREAEAKGHVTTILGRRLP-----IPDINST 794 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGN 575 + + + G A K+ V + + + L++ LV+ Sbjct: 795 NGNIRSFAQRNAINYPIQGSAADIIKQAMVRVSGRMRREGLKSRLIMQVHDELVFEVPLE 854 Query: 576 NRSYLN 581 + + Sbjct: 855 EKLTME 860 >gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] Length = 929 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 121/695 (17%), Positives = 211/695 (30%), Gaps = 172/695 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID + A + ++ + F H P+ L K LEN Sbjct: 354 IDTETTSLD--AMNAALVGISIAFQAGKAVYIPVGHSLTAAPEQLDLQYVLGYLKPHLEN 411 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119 + + N +++ V N I ++ +LA + L L + E L L Sbjct: 412 PALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGLDELSERWLGLE 468 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171 + E C + A EY D + Sbjct: 469 TITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFALRLEAHLRAQM 515 Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+LE E + + + G +D A + + E KL+QE + G Sbjct: 516 DAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 574 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + G+ + L +T T + VL P + NR A Sbjct: 575 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA- 633 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P P+ R H Q + Sbjct: 634 ------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQAVA 663 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I VR A +G +V AD + IE R++A ++G++ + Sbjct: 664 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 723 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ GED++ T A F +AP V+ +QR K + L Y G +A + G++ Sbjct: 724 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 780 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + +R Sbjct: 781 LSAKTFID--------------------------------------------RYFARYPG 796 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578 + + + EQ G RR L LP R+ G R+ Sbjct: 797 VAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNKNANARAGAERA 841 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 +N Q + D++ M++ +++ VHDE+ Sbjct: 842 AINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDEL 883 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 V E P+ + + L +M +PL AE Sbjct: 884 VLEVPEAELDSVKEKLPQIMAKVDDGMLKVPLVAE 918 >gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120] gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120] Length = 977 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 119/668 (17%), Positives = 214/668 (32%), Gaps = 144/668 (21%) Query: 33 FAFGFDDHPVELWDCVH--DPVMPQVLKEA-----LENTDVTIVAHNSYFERTVLKACFN 85 +G + H + Q + A LE+ D N+ F+R V Sbjct: 409 CCWGTETDASAYIPLAHTKGENLNQDIVLAALRPILESADYPKTFQNAKFDRLV---FLV 465 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC--LY 143 I + + +LA P + L +L R+ L Sbjct: 466 QGINLTGVVFDPMLASYVLNPD------TSHNL--------TDLTQRYLGLTIQNYVDLV 511 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTI 192 + K YC V T ++ +L L EQ L + T+ Sbjct: 512 PKGKTIADINISAVANYCCLQVYATFQLVAKLREELAKTPNLDKLLREVEQPLESVLATV 571 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G ++ A H L+Q ++++ KL ++ L G + ++L LF + GL + Sbjct: 572 EYTGVRINSAYLHELSQQLEIDLAKLQEQATELA-GEKFNLGSPKQLSYILFEKLGLSTK 630 Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 +T ++ +KL ++ G + +++ Sbjct: 631 YSRKIQTGYSTDAATLEKLQE--------------------------VDDTGFVNAIIEY 664 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 S+ P P R H + +Q T +S+P+ I S +R Sbjct: 665 RTLSKLKSTYVDALPALVRPDTQRVHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIR 724 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + G + AD + IE R+LA ++ E ++A++ ED++ T F V Sbjct: 725 KAFLPESGWLMAAADYSQIELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVF--EKEDVN 782 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 D+R I K + + Y G+ K + +TG++ N +K + + Sbjct: 783 SDERRIAKTINFGVIYGMGS---LKFSRSTGIDKNVANEFIK------RFNERYAKIFAY 833 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E + AI ++ T R R+ D Sbjct: 834 LEGVKKQAISLGYVETILGR-----------------------------------RRYFD 858 Query: 546 VPLVYMKKDKNNLI--LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 ++K K + + L ++L D G RS N +Q Sbjct: 859 FTNNSLRKLKGSKPEDIDLSKLKNLGPYDAGLLRSAANAP------------------IQ 900 Query: 604 AVSRDILAEGMMNAT----KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA 658 S DI+ M+ K ++L VHDE+V E P + + +M + Sbjct: 901 GSSADIIKIAMVQIHEVLKKYQARLLLQVHDELVFEVPPQEWAELQPQIKSVMENAVK-- 958 Query: 659 KGLPLKAE 666 +PL + Sbjct: 959 LSVPLVVD 966 >gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945] Length = 930 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 126/705 (17%), Positives = 219/705 (31%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K L N + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ + Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPDMISPQDN 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + +A EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGVAEYMQRAKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622 G R+ +N Q + D++ M++ Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNWLSDGIDS 874 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919 >gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 922 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 113/640 (17%), Positives = 199/640 (31%), Gaps = 148/640 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSAL 109 LK LEN + V ++ FE +L C N I + +L + + Sbjct: 390 LKPLLENPNKLKVGQHAKFETNILANCAIGGDQNNGILVQGIAFDTMLESYVLDSTATRH 449 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 ALK Q + +++ + K T + + + L G Y D VT Sbjct: 450 DMDSLALKYLGQSKTDFQDIAGKGVKQLTFDQI----------SLELAGPYAAEDADVTF 499 Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L+ L+ E L + I +G VD L + + + L Sbjct: 500 RLHQALQEKLAATPSLGTVLNDIEMPLMPVLARIERQGALVDANLLGVQSVELGEKLVAL 559 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 ++E ++ G + ++L L+ + GL + T + + Sbjct: 560 EREAFAIA-GEEFNLGSPKQLGVILYEKLGLPVLSKTAKGQASTAEAVLAELAEQDYPLP 618 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + +Q+ S+ P Q R R H Sbjct: 619 KVL--------------------------MQYRSLSKLKSTYTDRLPEQINSRTGRVHTN 652 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + + DP+ I +R +A +G KL+ AD + IE R++A +A Sbjct: 653 YQQAVAATGRLSSIDPNLQNIPIRTSEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 712 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF D++ T A F V VT DQR K + L Y A +A Sbjct: 713 KDEGLLYAFRHNLDVHRATAAEVFGVELEAVTLDQRRSAKAINFGLIYGMSAF---GLAK 769 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ + + +M+ + A Sbjct: 770 QIGVDRKQSQAYID-----RYFARYPGVLAYMERTRAQAA-------------------- 804 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 Q F +TI +R +P + K P+ R Sbjct: 805 -----------EQGFVETI-------FGRRLYLPDINAKN---------PALRK------ 831 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 G R+ +N Q + DI+ + M+ + ++L Sbjct: 832 GAERTAINAPM------------------QGTAADIIKKAMVAVDRWLTTSGLDAKVILQ 873 Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E + + M++ + +PL E Sbjct: 874 VHDELVLEVREDLVDQVRDEIRQHMSAAAT--LDVPLLVE 911 >gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908] gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908] Length = 945 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 111/645 (17%), Positives = 202/645 (31%), Gaps = 164/645 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110 LK LE+ + V N ++ ++ D + ++ V ++ N ALK Sbjct: 421 LKPLLEDPKLKKVGQNLKYDISIFANVGIKLQGVAFDTMLESYVFNSVASKHNMDDLALK 480 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +G K +E+ + K T + Y D +T Sbjct: 481 YLG-------HKNISFEEIAGKGAKQLTFNQI----------DLETAAPYAAEDADITLR 523 Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L KE L + I +G +D + +Q + + KL+ Sbjct: 524 LHQHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVLIDSMMLGQQSQEIAISIDKLE 583 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275 Q+ + G + ++L+ F + G + T T + VL P Sbjct: 584 QDAFEIA-GETFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKI 642 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R A + P + R Sbjct: 643 ILQHRSLA-------------------------------KLKSTYTDKLPLMVNAQSGRV 671 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H Q +S+P+ I +R IA EGKK++ AD + IE R++A Sbjct: 672 HTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAQEGKKVLAADYSQIELRIMA 731 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ ++ L AF G+D++ T A F V ++VT +QR K + L Sbjct: 732 HLSQDKGLLTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGLI---------- 781 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G++ A + +A+ + + +P V K Sbjct: 782 ----YGMSAFGLARQLDIPRG-----EAQKYIDTYFDRYP--------------GVLKYM 818 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + ++L + + +R +P + KD+N + Sbjct: 819 EDTRAEAADLGY-------------VSTLYGRRLYLPAI---KDRNAMRRQ--------- 853 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYD 623 R+ +N Q + DI+ + M+N T Sbjct: 854 ---AAERAAINAPM------------------QGTAADIIKKAMINIASWIESETHGEIT 892 Query: 624 IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 +++ VHDE+V E D E + +M S + L AEG Sbjct: 893 MIMQVHDELVFEVDSDKAEALKEQICKMMADAVS--LDVELLAEG 935 >gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] Length = 938 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 98/539 (18%), Positives = 172/539 (31%), Gaps = 78/539 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVG 113 + L+ LE+ V N ++R+VL N I + +L + Sbjct: 413 EKLRPLLESEKYKKVGQNLKYDRSVL---LNHGIELKGIKFDTMLESYVLDSTGRHDMDT 469 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF- 172 ALK + +E+ + K + + Y D VT + Sbjct: 470 LALKYLGHQCISFEEIAGKGKKQLPFNQI----------SIIEAAPYAAEDADVTLRLHL 519 Query: 173 ----------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 K L ++ E L + I G +D L + + +L+ Sbjct: 520 QLFEQLSAEPKLLSVFNNIELPLLTVLSDIERGGVEIDSDLLTKQSAEIGKRLLELEALA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 G + ++L+T L+ E L + T T + VL P + Sbjct: 580 YEEA-GKPFNLSSPKQLQTILYDELELPVLKKTPKGAPSTAEEVLQELALTYPLPKLIIE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G S+ P + R H Sbjct: 639 HR-------------------------------GLSKLKSTYTDKLPKMVNEKTGRLHTS 667 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R IA G K+V AD + IE R++A ++ Sbjct: 668 YQQAVTVTGRLSSTDPNLQNIPIRSAEGRRIRQAFIAQPGYKIVAADYSQIELRIMAHLS 727 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ L AF TG+D++ T + F+V +VT +QR K + L Y A +A Sbjct: 728 QDKGLLDAFSTGKDIHKATASEVFSVPLDEVTTEQRRSAKAINFGLIYGMSAF---GLAK 784 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E+ A E ++ T R + Sbjct: 785 QLNIGRHEAQLYMDKYFNRYP------GVLIYMEDTRSLANEKAYVETILGR-RLQLPNI 837 Query: 514 HSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 SR L +A G A II + D+ +K ++ +++ LV+ Sbjct: 838 KSRNGMLKKAAERAAINAPMQGTAADIIKKAMIDMADWIAQKSPGSVQMLMQVHDELVF 896 >gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] Length = 930 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 125/706 (17%), Positives = 217/706 (30%), Gaps = 180/706 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A D ++ + F H P+ L Sbjct: 352 TIGIDTET-TSLD---------AMDASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 402 VLGRLKPHLENPVLKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 458 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 459 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 505 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 506 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 565 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + + ++L+ LF + G+ + L +T T + VL P Sbjct: 566 QEAYAAAS-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 624 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 625 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 653 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 654 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 713 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 714 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY-- 771 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 772 -GLAKSLGIDNLSAKNFID----------------------------------------- 789 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 790 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 831 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621 G R+ +N Q + D++ M++ Sbjct: 832 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLK 873 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E P+ + + L +M +PL AE Sbjct: 874 SKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLKVPLVAE 919 >gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047] gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047] Length = 610 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 100/625 (16%), Positives = 192/625 (30%), Gaps = 151/625 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN + + N F+ ++ + T++L+ + A Sbjct: 89 IKPILENPNSHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 146 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + EY D VT ++ Sbjct: 147 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 196 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 197 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 256 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + +T + VL + +R Sbjct: 257 A-GQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELPKILVEHR- 314 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 315 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 344 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 345 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 404 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 405 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 461 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + Q++ Sbjct: 462 ISRADAQKYMN-----------------------------------------LYFQRYPS 480 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575 V + ++ +A + + + R+ L LP S R G Sbjct: 481 VQQFMTDI-RAKAKAQGYVETLFGRR-----------------LYLPDINSSNAMRRKGA 522 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630 R +N Q + DI+ M+ + ++++ VHD Sbjct: 523 ERVAINAPM------------------QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHD 564 Query: 631 EIVCET-PDTDEFNASMLYHLMTSN 654 E+V E + F + M + Sbjct: 565 ELVFEVRSEKVAFFREQIKQHMEAA 589 >gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM 22836] Length = 933 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 95/592 (16%), Positives = 186/592 (31%), Gaps = 82/592 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70 D G+ ++ +F F + D + + EN + + Sbjct: 366 DTETTGLDPIVS--ELVGMSFAFKEGEAYYVPVPADFDEAKKLIDKFRPFFENEKILKIG 423 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VLK DI + + ++A P A + EL Sbjct: 424 QNIKYDIIVLKKY---DIHVRGKLFDTMIAHYLINPELRHNMDYMAETYLKYRTIHIDEL 480 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181 I K L R+ +Y D VT ++ + LE K Sbjct: 481 IGAKGK----NQLNMRSLRP-----DQISDYACEDADVTLKLKRILEKAIEKQDLSKLFY 531 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L Y+ + G +D ++ + +E ++ E+ L + +++ Sbjct: 532 EIELPLIYVLADMEFTGVRLDTVALGEYSKTLTIELQNIESEIFKL-GETEFNINSAKQV 590 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + + T+T T + L S K P ++ R Sbjct: 591 GEVLFDKLKIIDKPKKTKTGQYVTSEETLESIKNTHPIVNKILEYR-------------- 636 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 G + P P+ + H +Q +T +++P Sbjct: 637 -----------------GLKKLLSTYIDALPLLVEPKDGKIHTSFNQTVTATGRLSSTNP 679 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R IA EG AD + IE R++A ++ + ++AF +GED++ Sbjct: 680 NLQNIPIRDAQGREIRKSFIADEGCLFFSADYSQIELRIMAHLSQDPSMVEAFNSGEDIH 739 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A+ + + +VT D R K + Y +A + L+ Sbjct: 740 AATAAKIYKLKIDEVTSDMRRKAKTANFGIIYGISVF---GLAERLTIPRGEAKELIDG- 795 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + + A E ++ T R K+ +SR + + + Sbjct: 796 -----YFETYPKVKEYMDKCITDAREKTYVETVFGR-KRYLPDINSRNATVRGYAERNAI 849 Query: 530 QT-IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 I+ A I + + +K+ ++L L + + N + Sbjct: 850 NAPIQGSAADIIKVAMNNIFKRFEKENIKSKMILQVHDELNFNVLENEIDKV 901 >gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069] gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069] Length = 915 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 119/691 (17%), Positives = 215/691 (31%), Gaps = 168/691 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----------DPVMPQVLKEALEN 63 D + Y E ++ +F D+ H D V+ Q LK LE+ Sbjct: 343 DTETTSLN-YIE-AELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEVLKQ-LKPLLES 399 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQ 121 V N ++ +VL N DI + +L N + S AL + Sbjct: 400 EKHKKVGQNLKYDMSVLA---NYDIELAGIEFDTMLESYCLNSVASRHDMDTLALHHLNH 456 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + +E+ + T + + Y D +T + ++L P + Sbjct: 457 VNIKFEEIAGKGKNQLTFDQI----------EVEQAAPYASEDADITMRLHQKLWPELKQ 506 Query: 182 -----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E L + + G VD L + + + +L++E + G Sbjct: 507 NEGPTQIFQHIEMPLLRILSKVERNGVLVDGKLLLEKSHLFEKRLKELEKEAYEIA-GKE 565 Query: 231 SSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ + E GL + +T + VL P + +R Sbjct: 566 FNLGSPKQLQVIFYEELGLPILKKTPKGQPSTAEEVLQELALDYPLPKLILEHR------ 619 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 G S+ P + R H Q I Sbjct: 620 -------------------------GLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIAAT 654 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R+ IA +G K++ AD + IE R++A ++ ++ LKA Sbjct: 655 GRLSSTEPNLQNIPIKTEEGRSIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEGLLKA 714 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE G D++ T A F+V +VT +QR K + L G++ Sbjct: 715 FEEGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLI--------------YGMSAFG 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + T+ A+++ +P +E T Sbjct: 761 LAKQIDTDR-----NTAQDYINTYFARYP--GVETYMESTKE------------------ 795 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + +R +P ++ K R R+ +N Sbjct: 796 -------KAADLGYVETLYGRRLYLPEIHSKN---------------GMRRKAAERTAIN 833 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEIVCET 636 Q + DI+ M+ K G +++ VHDE+V E Sbjct: 834 APM------------------QGSAADIIKLAMLEVDKWLKDVKGIKMIMQVHDELVFEV 875 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E + LM S +PL A+ Sbjct: 876 EEDKLELAQKEIPKLMQSVAE--LSVPLIAD 904 >gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] Length = 932 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 121/695 (17%), Positives = 212/695 (30%), Gaps = 172/695 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID + A + ++ + F+ H PQ L K LEN Sbjct: 357 IDTETTSLD--AMNAQLVGISIAFEAGEAAYIPLGHSMTAAPQQLDLQDTLGRLKPHLEN 414 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119 + + N +++ V N I + +LA + L L + E L L Sbjct: 415 GSLKKIGQNLKYDQHV---FANYGIALRGIAGDAMLASYIVESHLGHGLDELSERWLGLP 471 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-L 178 + E C + A EY D + L + Sbjct: 472 TITYES-------LCGKGAKQIS------FADVAVEQAAEYAAQDADFALRLEAHLRAQM 518 Query: 179 SSKEQELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+ E++ + + G +D A + + KL+++ T G Sbjct: 519 DEKQLEMYLNLELPVAQVLFEMERNGVHIDRAELAAQSSELGAALLKLEEQAFQ-TAGQP 577 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + G+ + L +T T + VL P + NR A Sbjct: 578 FNLNSPKQLQEILFDKMGIPTKGLKKTASGGISTNEAVLEQLAPDYPLPKIILENRSLA- 636 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P PR R H Q + Sbjct: 637 ------------------------------KLKSTYTDKLPEMINPRTGRVHTTYSQAVA 666 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I VR A G +V AD + IE R++A ++G++ + Sbjct: 667 ITGRLASSNPNLQNIPIRTAEGRRVRRAFTAPAGSLIVSADYSQIELRIMAHLSGDKTLM 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ GED++ T A F +AP V+ +QR K + L Y G +A + G++ Sbjct: 727 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 783 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + +R Sbjct: 784 LSAKNFID--------------------------------------------RYFARYPG 799 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578 + + + E+ G RR L LP R+ G R+ Sbjct: 800 VAEYIQRTKEEAAAQGYVETLFGRR---------------LYLPDIRAKNANARAGAERA 844 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEI 632 +N Q + D++ M+ + + +++ VHDE+ Sbjct: 845 AINAPM------------------QGTASDLIKRAMIAVSSRLHSDGLESKLIMQVHDEL 886 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 V E + + E ML +M +PL AE Sbjct: 887 VLEVVENELETVKEMLPQVMAEVAQGRLNVPLLAE 921 >gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a] gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a] Length = 924 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 89/539 (16%), Positives = 164/539 (30%), Gaps = 78/539 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 L+ L++ + + ++ VL+ + + + +L N + Sbjct: 399 DALRSVLQDPAKKKLGQHGKYDLHVLRRH---GVQVQGYHDDTMLESFVLNSTATRHDMD 455 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ + +++ + K P + Y D +T + Sbjct: 456 SLALRYLGYSTIKFEDVAGKGAKQ----------IPFSQVGIDEASRYAAEDADITLRLH 505 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L+P E L + +I G VD +Q + Q+ Sbjct: 506 HALQPQLLAEPALDSVYRGIEMPLVPVLASIEANGVRVDTDELRRQSQDLSSRMLAAQQK 565 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVF 277 L G + ++L+ LF E L +T + L + Sbjct: 566 ATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP---- 620 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R L++ G ++ P P R H Sbjct: 621 ---------------------------RVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHT 653 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +SDP+ I +R +A EG +L+ AD + IE R++A + Sbjct: 654 SYHQSGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPEGFQLLAADYSQIELRIMAHL 713 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + ++AFE G D++ T A F +VT ++R K + L Y A +A Sbjct: 714 SEDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAF---GLA 770 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ V + +F M++ + + G Sbjct: 771 RNLGIDRGQAQDYV--ALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRL-----YLND 823 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVY 570 H+R L +A G A KR V + +D ++L LV+ Sbjct: 824 IHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVF 882 Score = 50.5 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 78/244 (31%), Gaps = 33/244 (13%) Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTG-LNLNTFAHLVKTNSAPEEWEDAENFCR 483 T+D R I + + FQ +A+ + L AHL + +E + R Sbjct: 679 TEDGRRIRRAFV-------APEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHR 731 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 G E V R+ ++ AF G I + Sbjct: 732 ATAAE---------VFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLG--IDRGQA 780 Query: 544 RDVPLVYMKKDKN---NLILMLPSGRSLVYRD-VGNNRSYLNTTTR--QLTREYTYGGKL 597 +D +Y + + M R Y + + R YLN Q R Sbjct: 781 QDYVALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERA-A 839 Query: 598 TENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT-DEFNASMLYHL 650 +Q + DI+ M++ + A ++L VHDE+V ET + E + Sbjct: 840 INAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVER 899 Query: 651 MTSN 654 M+ Sbjct: 900 MSQA 903 >gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165] gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165] Length = 954 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 105/634 (16%), Positives = 196/634 (30%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGE 114 LK LEN ++ + N ++ T+ I + T++ + + Sbjct: 431 QLKPILENPNIRKIGQNIKYDLTIFARY---GIELQGVAFDTMLQSYTLDSTGRHNMDNL 487 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + +EL + T + + EY D +T ++ + Sbjct: 488 AERYLGHQTIPFEELAGKGKHQLTFDQI----------ELDKATEYAGEDAEITMKLHQL 537 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L K E L + + G +D A + ++ +L+ + Sbjct: 538 LWSELQKTPELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVH 597 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G V + ++L+ LF + GL + T + Q + Sbjct: 598 QEA-GEVFNLASTKQLQEILFNKLGLPILKKTPKGAPSTNEEVLEELAQMGHQVPVLLME 656 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P + R H Q + Sbjct: 657 HR--------------------------GLSKLKSTYTDKLPQMINAQTGRVHTSYHQAV 690 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA +G ++ AD + IE R++A +A + Sbjct: 691 TATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIMAHLANDANM 750 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +KAF G+D++ +T A F V VT +QR K + L Y +A+ G++ Sbjct: 751 IKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEF---GLANQLGIS 807 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 DA+ + + +P A ++ R+K Sbjct: 808 RT----------------DAKKYMELYFQRYP-----------AVQQFMLDIREK----- 835 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + +T+ GR L ++ ++ Sbjct: 836 ----AAEKGYVETLF-------------------------------GRRLYLPEINSS-- 858 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ +A +++ VHDE+V Sbjct: 859 --NQMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDQAVRNCEDIAMIMQVHDELV 911 Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E D E ++ M +PL AE Sbjct: 912 FEVKADRVEHYTQLIKAEMEKAIE--LKVPLIAE 943 >gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107] gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107] Length = 998 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 117/660 (17%), Positives = 211/660 (31%), Gaps = 146/660 (22%) Query: 41 PVELWDCVHDPVMP-QVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 P EL + +P + + AL + N+ ++R +L + ++ + Sbjct: 440 PSELTEATPPQQLPLETVLMALSPWLASPQHPKALQNAKYDRLIL---LRHGLTLNGVVI 496 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 +LA L+ L E + T+ L + + Sbjct: 497 DTLLADY------LRDAAAKHGLDVMSEREF------GFRPTTYGDLVGKKQTFADVEIE 544 Query: 156 LFGEYCKGDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 YC DV VTR + + L L EQ L + + G +DV Sbjct: 545 PASLYCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPY 604 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---T 258 TL+ + +L+ E + + + + ++L LF GL + T+T T Sbjct: 605 LKTLSDELGSTLNRLETEAKQVA-EVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFST 663 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P V +R+ S+ Sbjct: 664 DATVLEKLEHDHPVVPLVLEHRVL-------------------------------SKLKS 692 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373 P R H + +Q +T +S+P+ I S +R + EG Sbjct: 693 TYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEG 752 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE R+L ++GE+ +A+ TG+D++ T + +V+ DQR +GK Sbjct: 753 WTLLSADYSQIELRILTHLSGEEVLQEAYRTGDDVHALTARLL--LDKDEVSADQRRLGK 810 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y GA Q+ A TG++ + + + F E A Sbjct: 811 TINFGVIYGMGA---QRFARETGVSSAEAKEFL--TKYKQRYPKVFAFL----ELQERLA 861 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + ++ T R + Sbjct: 862 LSRGYVETILGRRRP------------------------------------------FHF 879 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 D+N L +L ++ + + Q R +Q S DI+ Sbjct: 880 DRNGLGRLLGKD----PLEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVA 929 Query: 614 MMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 M+ ++L VHDE+V E PD + +++ + M + +PL E Sbjct: 930 MVQLQAMLLSQGIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAIK--LSVPLVVE 987 >gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] Length = 923 Score = 277 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 93/600 (15%), Positives = 189/600 (31%), Gaps = 86/600 (14%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTDVTIV 69 +D G ++ + FA+ + PV D + K EN V Sbjct: 354 SLDTETTGTDPIRAELVGMSFAYAENQAFYVPVPA-DRTEAQRIVDKFKPVFENPQTLKV 412 Query: 70 AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKMEE 125 N ++ VL N + I + ++A P + + E L + K+EE Sbjct: 413 GQNIKYDMLVLA---NYGVEIQGPMFDTMIAHYVLQPELHHGMDYLAEIYLHYETIKIEE 469 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---- 181 + R+ Y D VT ++ LE + Sbjct: 470 -------LIGPKGKNQKNMRDLDP-----ANIYRYACEDADVTLKLKNVLEKELKQNDAE 517 Query: 182 ------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 E L + + G +D ++ ++++E+ L G+ + Sbjct: 518 ALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHRLA-GVEFNIAS 576 Query: 236 LEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +++ LF + T+T T + VL S K ++ +R Sbjct: 577 PKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLKGKHEIVEKILEHR---------- 626 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 G + P P H +Q +T Sbjct: 627 ---------------------GLKKLLGTYIDALPQLINPETGHIHTSFNQTVTATGRLS 665 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +S+P+ I +R I EG + AD + IE R++A ++G+ ++AF Sbjct: 666 SSNPNLQNIPVRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFRAN 725 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +D++ T A+ + VT++QR+ K + Y +A G++ L Sbjct: 726 QDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVF---GLAERLGIDRKEAKEL 782 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + + ++ + A + +I T R ++ +SR + + Sbjct: 783 IDG------YFENYPHVKEYMDSSIQAARQKGYIETVFRR-RRYLPDINSRNAVVRGYAE 835 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTT 584 + G A K + + +++ ++L L + V + + Sbjct: 836 RNAINAPIQGSAADIIKVAMIRIYRRFREEGIRSKMILQVHDELNFSVVPEEKEKVQQIV 895 >gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996] gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996] Length = 933 Score = 277 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 126/706 (17%), Positives = 222/706 (31%), Gaps = 180/706 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 355 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 404 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 405 VLGRLKPHLENPVLKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 461 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 462 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFA 508 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 509 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 568 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + + ++L+ LF + G+ + L +T T + VL P Sbjct: 569 QEAYA-AAGQLFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 627 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 628 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 656 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 657 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 716 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 717 MAHLSGDKTLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 774 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + Sbjct: 775 -GLAKSLGIDNLSAKTFID----------------------------------------- 792 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 793 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 834 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621 G R+ +N Q + D++ M++ ++ Sbjct: 835 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSDDLLQ 876 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E P+++ + + L LM +PL AE Sbjct: 877 SKLIMQVHDELVLEVPESELDLVKTNLPELMADVGKGLLNVPLVAE 922 >gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336] gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336] Length = 951 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 200/621 (32%), Gaps = 145/621 (23%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGE 114 LK LEN + + N ++ T+ N I ++ T++ + Sbjct: 429 QLKPLLENPSIQKIGQNIKYDLTI---FANHHIQLNGVCFDTMLQSYVLDSTGRHNMGAL 485 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + ++ E + + + K T + + A EY D +T ++ + Sbjct: 486 SERYLGHQVIEFESIAGKGKKQVTFDKI----------AIAQATEYAAEDADITMKLHQV 535 Query: 175 L------EP-----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E L + T+ G +D ++ + T L+Q++ Sbjct: 536 LWQELQQSPSLVKVFNDIELPLVKVLSTMERNGVLIDSQALLKQSEKIARRLTALEQQVY 595 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L+ LF + L + T + Q + + Sbjct: 596 QEA-GAEFNLASTKQLQEILFTKLALPIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLME 654 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G ++ P + R H Q + Sbjct: 655 HR--------------------------GLAKLKSTYTDKLPSMVNKKTGRVHTSYHQAV 688 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I C+R IA +G K++ AD + IE R++A ++ + Sbjct: 689 TATGRLSSSDPNLQNIPIKNEEGRCIRQAFIARKGYKIIAADYSQIELRIMAHLSQDNGL 748 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ +T A F + +VT +QR K + L Y + +++ G++ Sbjct: 749 IMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIS 805 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +A+ + + +P + R+K Sbjct: 806 R----------------ANAQKYMDLYFQRYP-----------GVQTFMVDIREKAK--- 835 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNR 577 Q + +T+ + L LP S R G R Sbjct: 836 ------EQGYVETLFGRR-----------------------LYLPEINSSNAIRRKGAER 866 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIV 633 +N Q + DI+ M+ K +++ VHDE+V Sbjct: 867 VAINAPM------------------QGTAADIIKLAMIAIHNEIKKNDIQMIMQVHDELV 908 Query: 634 CETPDT--DEFNASMLYHLMT 652 E + DE++A ++ LM Sbjct: 909 FEVKENKVDEYSA-LIKSLME 928 >gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] Length = 915 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 119/702 (16%), Positives = 211/702 (30%), Gaps = 180/702 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID ET S + ++ +F + H P P+ L Sbjct: 342 IDTETDSLEPMK----------ARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAVLA 391 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAV 112 K LE+ + N ++R V N I + +L P +L+++ Sbjct: 392 RLKPWLEDASRAKLGQNLKYDRHV---FANAGIALAGVRHDTMLESYVLEAHKPHSLESL 448 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E L + E P + EY D + + Sbjct: 449 AERH------------LGRKGLSYEDLCGKGVNQIPFAQVDVARATEYSAEDSEMALHVH 496 Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P + E + + I G VD ++ + L+QE Sbjct: 497 QVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLVDPQELARQSRDLAERMVALEQE 556 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 + ++ + +++ LF + GL ++ T +T + VL+ P ++ Sbjct: 557 VYAIA-EQPFNLGSPKQIGEILFGKLGLPVKKRTASGAPSTDEDVLTELAADYPLPARIL 615 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R A + P P R H Sbjct: 616 EHRSLA-------------------------------KLKGTYTDKLPAMVNPATGRVHT 644 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + +++P+ I VR +A G ++ AD + IE R++A + Sbjct: 645 NYAQAVAVTGRLASNEPNLQNIPIRTPEGRRVRRAFVAPPGHVILSADYSQIELRIMAHI 704 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L+AF G D++ T A F + A+VT +QR KV+ L Y GA +A Sbjct: 705 SEDEGLLRAFSEGLDVHRATAAEVFGMPLAEVTSEQRRYAKVINFGLIYGMGAY---GLA 761 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + G+ + + Sbjct: 762 ANLGIEQKAAKDYID--------------------------------------------R 777 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YR 571 +R + + + + + E G RR L LP S R Sbjct: 778 YFARFAGVKRYMDETRVRAKEKGYVETVFGRR---------------LWLPEINSGNGPR 822 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625 G R +N Q + D++ M+ K +V Sbjct: 823 RSGAERQAINAPM------------------QGTAADLIKLAMIAVQKELDASGRATRMV 864 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P+ + ++ + LM A +PL AE Sbjct: 865 MQVHDELVLEVPEAELDWAKDAIPRLMAGVA--ALKVPLLAE 904 >gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] Length = 920 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 118/704 (16%), Positives = 215/704 (30%), Gaps = 157/704 (22%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDPVMPQV-----L 57 D ET S L ++ + + P L + L Sbjct: 335 DTETNSIDPLE----------ADLVGIGCCWGEGPTALAYIPVGHTAGEQLSMETVLSAL 384 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL 116 K LE+ V N+ ++R VL+ + + + +LA P + AL Sbjct: 385 KPILEDQQYPKVFQNAKYDRLVLRRA---GVSLTGVVFDPMLASYVLNPENSHNLSDLAL 441 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + +L+ + K A +YC DV T + L+ Sbjct: 442 RYLELTTVSYTDLVP-------------KGKTIGEVAIAEVAQYCGSDVHTTYRLVPLLK 488 Query: 177 P-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + E + + + G +D A + ++ ++ + +++ Sbjct: 489 ADLQEVPDLATLYTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKAAYD- 547 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNR 280 G + ++L F + GL + +T L + P V Sbjct: 548 AAGEEFNLGSPKQLSELFFEKLGLDKRKSRKNKTGYSTDAATLEKLQGDHPVVDSV---- 603 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 +++ S+ P P R H + + Sbjct: 604 ---------------------------VEYRTLSKLKSTYVDALPALIRPNTGRVHTDFN 636 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q IT +S+P+ I S +R + EG +LV AD + IE R+LA ++ E Sbjct: 637 QAITTTGRLSSSNPNLQNIPTRTAFSRQIRQAFLPKEGWQLVAADYSQIELRILAHLSEE 696 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +K + ED++ T F+ ++T ++R + KV+ + Y GA F + Sbjct: 697 PILIKTYREDEDVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMGAARFAREMDIH 756 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L+ TF + + + + + + MQ + Sbjct: 757 RLDAKTF-----IDRFNQRYPNVFEYLQQMQREAIAYG---------------------- 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 K I R+R N L + + + Sbjct: 790 ------------------YVKTIAGRRRYF----------NFTTRSLQALKGTDPTKIDL 821 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--AGYD--IVLTVHDE 631 + N L R +Q S DI+ M+ + GY ++L VHDE Sbjct: 822 SSLRTNGYDAGLLRAAANAP------IQGSSADIIKVAMIRLHELLKGYQANMLLQVHDE 875 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 ++ E P + E + M S A +PLK E K + Sbjct: 876 LIFEVPPDEWEELQPKIEQTMEDAVSLA--VPLKVEAQAGKNWM 917 >gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] Length = 930 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 91/544 (16%), Positives = 182/544 (33%), Gaps = 72/544 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70 D G+ D ++ +F F+ + + K LE+ ++ V Sbjct: 362 DTETTGLDALVAD--IVGLSFAFEKGKAYYVPTPDSREQALEIVNIFKPVLEDANIEKVG 419 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKEL 129 N ++ +L D+ + + +LA P A +L Sbjct: 420 QNIKYDILLLSRY---DVKVKGTLFDTMLAHYLIDPDTRHGMDVLAENYLGYIPVSITKL 476 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181 I KG+ + D L EY D +T ++ ++ EPL + Sbjct: 477 IGE--KGKKQGNMRD-------VEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQ 527 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L Y+ I G +DV + ++ ++ + L+ + G+ + ++L Sbjct: 528 EVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEKA-GVKFNIASPKQL 586 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + +L P+A + + + +L L + + Sbjct: 587 GEVLFDKL--------------------QLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQ 626 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L F + P P H +Q + +++P+ I Sbjct: 627 D------ILDFRQLQKLKSTYVDALPGLINPTTGLIHTSYNQAVAATGRLSSTNPNLQNI 680 Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 VR I SE ++ AD + IE R++A ++ + L+AF+ G D++ T Sbjct: 681 PIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATA 740 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A+ + + +V+ DQR K + + Y A + + G+ A ++ Sbjct: 741 AKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQ---SLGIPRREAADIID------ 791 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 ++ + R A E+ F+ T +R ++ R +S + + Sbjct: 792 QYFQQYSGIRDYMAKAIASAKENGFVETILKR-RRYLRDINSANMTVRGFAERNAINAPI 850 Query: 534 NGKA 537 G A Sbjct: 851 QGSA 854 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 103/542 (19%), Positives = 206/542 (38%), Gaps = 51/542 (9%) Query: 1 MATLFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + T + ET + + D+ G+ + + L + PV L + + L+ Sbjct: 56 LVTALKELETHTVVGLDIETTGLDPHTS--EISLIQIAAPNRPVILIE-FRGITNKETLR 112 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEAL 116 +E+ + V HN FE L ++ WI T+++++ GLP L+ + Sbjct: 113 RFIEHPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTG 172 Query: 117 KLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L ++ ++ K+L +RN P R+ + + ++ Sbjct: 173 VLPIPDLTRSIKNKKKLKQEL----------NRNLPGSYSLMRVVARELGYSLDKSLQVS 222 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL------NQIVDVERTKLDQELESLT 226 +PL+ ++ + ND + L L NQ+ D + +L Sbjct: 223 DWGKPLTQEQLQY-----AANDAAVVL--PLREALRNKIIDNQLTDAIQVELGALARVAQ 275 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT----PQAIQVFNNRMR 282 GL+ L++ L E ED + CQ + + +L +I + +N Sbjct: 276 MGLMGMGLDLDRWGE-LAKEIETRREDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQV 334 Query: 283 ASRSAVLKLNTLVEAMNSDGRLR-------GTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + A L ++T + ++ +L +++ S+ G P P R Sbjct: 335 IAALARLGIHTDSTSKDTLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRI 394 Query: 336 HEELDQIITHLPTSITSDPDPLQIIS-DCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 H ++Q+ S+P+ QI RSC + + G KL++AD + IE R+ A +A Sbjct: 395 HPNVNQMRAASGRFSFSNPNLQQIPRERQYRSCFVPAPGYKLIIADYSQIELRIAAEIAN 454 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS- 453 + + A+ +DL+ T A +VTK +R +GK + L Y GA + A Sbjct: 455 DSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMGATKLRIYAET 514 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+++ ++ + + + + ++D I T R+++ W+ + Sbjct: 515 NYGVSMTFDEAQRFRDNFFKGYPGLHQWHQDTACKLRTTKVKD--IRTLSGRLRR-WKDE 571 Query: 514 HS 515 Sbjct: 572 PP 573 >gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868] gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868] gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM] gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Riemerella anatipestifer RA-GD] Length = 935 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 102/581 (17%), Positives = 204/581 (35%), Gaps = 70/581 (12%) Query: 27 DVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 + +I +F + + + + E + +AHN ++ VL Sbjct: 378 EAELIGISFSYKKGLAYYVPIPENRAEAQAIVERFRPFFEKESILKIAHNLKYDYKVL-- 435 Query: 83 CFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 N I + + ++A P + + K + LI + KG+ Sbjct: 436 -LNYGIEVTGNLFDTMIAHYLLNPDGRHGMDYLSEMYLNYKPIALETLIGKKGKGQKT-- 492 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191 L + + P +Y D +T ++++ P KE+ L + Sbjct: 493 LREIDLPTQ-------TQYAAEDADITFQLYEIFSPQLKKEEVEEVFYKIEMPLVKVLAK 545 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G +D + ++ + L+ ++ G + ++L LF + Sbjct: 546 MELTGVALDEEWLKDESISLEQDLKILEGQIFEQA-GEEFNINSPKQLGDILFEKL---- 600 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 KL P+A + + S + KL+ E ++ L++ Sbjct: 601 ----------------KLDPKAKKTKTGQYSTSEDVLQKLSHKHEI------IKLILEYR 638 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366 + P Q P R H Q + +++P+ I VR Sbjct: 639 QLQKLKSTYVDALPNQISPIDGRVHTSFAQTVAATGRLASNNPNLQNIPIRTERGQQVRG 698 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 +A +G K+V AD + IE R++A ++GE+ +KAF+ G+D++ +T ++ F+V +V+K Sbjct: 699 AFVAPKGSKIVSADYSQIELRLIAEISGEETMIKAFKEGQDIHASTASKLFDVPLNEVSK 758 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR+ K + + Y A A A TGL+ L+ + +E +M Sbjct: 759 TQRSQAKTVNFGIIYGQSAFAL---ADQTGLSRTDAKQLIDS-----YYETYPKLKAFMT 810 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 E + A + ++ T R K+ + +S + + G A K + Sbjct: 811 EQV-QVARKKGYVETIMGR-KRHLKDINSNNFVVRGHAERNAVNAPIQGSAADIIKLAMI 868 Query: 547 PLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + K + ++L LV+ T +Q Sbjct: 869 KIDSEIKAQGLKTKMLLQVHDELVFEVPNEEIEVATTLIKQ 909 >gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12] gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12] Length = 917 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 118/684 (17%), Positives = 206/684 (30%), Gaps = 160/684 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA-- 60 + ID ET S Y D ++ +F + HD P+ L +A Sbjct: 340 IAIDTETTSLN---------YM-DAKLVGISFAIEAGKAAYLPLGHDYLDAPEQLDQAEA 389 Query: 61 -------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKA 111 LEN ++ V N ++ + N+ I + +L N + + Sbjct: 390 LAKLKPLLENPELKKVGQNLKYD---ISIFANVGIKLQGIAFDTMLESYVFNSVATKHNM 446 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 ALK K +E+ + K T + Y D +T + Sbjct: 447 DDLALKYLGHKNISFEEIAGKGVKQLTFNQI----------DLETAAPYAAEDADITLRL 496 Query: 172 FKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P KE EL + I G +D + + + +L+Q Sbjct: 497 HQHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLIDSMMLGQQSGELARTIDELEQ 556 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 + + G + ++L+ F + G + T T + VL P + Sbjct: 557 KAFEIA-GEKFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLPKII 615 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R A + P + R H Sbjct: 616 LQHRSLA-------------------------------KLKSTYTDKLPLMVNAKSGRVH 644 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q +S+P+ I +R IA EGKK++ AD + IE R++A Sbjct: 645 TSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGKKVLAADYSQIELRIMAH 704 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ ++ L AF G+D++ T A F+V +VT +QR K + L Y A + Sbjct: 705 LSQDEGLLTAFAAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVNFGLIYGMSAF---GL 761 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A + + T ++ ++M+E E A + ++ T R + Sbjct: 762 AKQLDIPRPEAQKYIDT-----YFKRYPGVLKYMEETRAE-AADLGYVSTLYGR-RLYLP 814 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 R + +A G A K+ + + + Sbjct: 815 AIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIAH--------------------- 853 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 T+G + I+Q VHDE Sbjct: 854 ---------------WIATETHGE--IDMIMQ------------------------VHDE 872 Query: 632 IVCETP-DTDEFNASMLYHLMTSN 654 +V E D E + + LM Sbjct: 873 LVFEVDSDRAEEMQAKVCQLMADA 896 >gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275] Length = 931 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 127/706 (17%), Positives = 218/706 (30%), Gaps = 180/706 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P PR + Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPDMISPRDN 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621 G R+ +N Q + D++ M++ Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLK 874 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 SKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVGGGLLDVPLVAE 920 >gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102] gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102] Length = 930 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 125/705 (17%), Positives = 220/705 (31%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N DI ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYDIALNGIAGDSMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ L + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILVDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSIIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNISAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGIAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGY 622 G R+ +N Q + D++ M++ ++ Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSYDLKS 874 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E P+ + + L +M +PL AE Sbjct: 875 KLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 919 >gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220] gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220] Length = 928 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 104/619 (16%), Positives = 194/619 (31%), Gaps = 141/619 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK LE+ + V N ++R +L N DI + + +L N + Sbjct: 405 LKPLLEDENAHKVGQNLKYDRGILA---NYDIELRGIVFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K +E+ + T + A G Y D VT ++ + Sbjct: 462 SDRWLKHKTITFEEIAGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLK 511 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P K + L + + G + A+ H ++ + + +L+Q+ Sbjct: 512 MWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAPAVLHKHSEELTLRLNELEQKAH 571 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L+T LF + G+ T +T + VL P + Sbjct: 572 EIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G ++ P + R H Sbjct: 631 R-------------------------------GLAKLKSTYTDKLPLMINKKTGRVHTSY 659 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I +R IA E +V AD + IE R++A ++ Sbjct: 660 HQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + VT +QR K + L Y A +A Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLARQ 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +A+ + E +P Sbjct: 777 LNIPRK----------------EAQKYMDLYFERYP------------------------ 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + Q E G + GR L D+ Sbjct: 797 ----GVLEYMERTRAQAKEQG-----------------------YVETLEGRRLYLPDIK 829 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ + G + I +A+ I +G + + +++ VHDE+V Sbjct: 830 SSNGARRAGAERAAINAPMQGTAADIIKRAM---IAVDGWLQTEQPRVRMIMQVHDELVF 886 Query: 635 ETPDTD-EFNASMLYHLMT 652 E D E + ++ LM Sbjct: 887 EVHKDDLESVSKKIHQLME 905 >gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN] gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN] Length = 926 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 125/702 (17%), Positives = 218/702 (31%), Gaps = 181/702 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 +D ET S ++ ++ +F H P P+ L Sbjct: 354 LDTETTSLDEMR----------AEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEVLA 403 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAV 112 K LE+ + + ++R V N DI + + T++ + P L ++ Sbjct: 404 RLKPWLEDARYPKLGQHVKYDRHV---FANHDIDVRGYVHDTMLQSYVLEVHKPHGLASL 460 Query: 113 GEALKLSSQKMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 E G+ I+ C H+ P + Y D T + Sbjct: 461 AERH--------TGRTGISYEDLCGKGAHQI------PFAQVPVDKAAAYSCEDSDQTLD 506 Query: 171 IFKRLEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L PL + +L + L+ I G +D + + +L+ Sbjct: 507 VHLALWPLLQADDKLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRILQLET 566 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 E + G + ++L F + G+ + T T T + VL + P ++ Sbjct: 567 EAYEIA-GQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKL 625 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R A LPR R H Sbjct: 626 LEHRSLTKLKGTYTDKLAQLA-------------------------------LPRTGRVH 654 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q + ++DP+ I VR +A G + AD + IE R++A Sbjct: 655 THYAQAVAVTGRLSSNDPNLQNIPIRTAEGRRVREAFVAPPGCVIASADYSQIELRIMAH 714 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G+ L AF G D++ T A F VA QVT +QR KV+ L Y + + Sbjct: 715 ISGDHALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMSSF---GL 771 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A G+ A + ++ ++M E + A ++ T R R Sbjct: 772 AKNLGIETKAAAAYID-----RYFQRYPGVKQYMDETKAQ-AKARGYVETVFGR-----R 820 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++ P+G R Sbjct: 821 LYLPEINS-------------------------------------------PNG----PR 833 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIV 625 G R+ +N Q + D++ M ++A K G ++ Sbjct: 834 RAGAERAAINAPM------------------QGTAADLIKLAMVAVQKELDAHKPGIKMI 875 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P+ + ++ + LM A +PL AE Sbjct: 876 MQVHDELVFELPEGEVDWLRGHIPRLMAEVA--ALKVPLLAE 915 >gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142] gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142] Length = 970 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 112/639 (17%), Positives = 211/639 (33%), Gaps = 130/639 (20%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 + L+ LE++D V N+ F+R + K I + + +LA P Sbjct: 428 EQVLDSLRTILESSDYPKVFQNTKFDRLIFKHQA---INLDGVVFDTMLASYVLHPE--- 481 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETH-ECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 S K+ E E + + E + + EYC D T Sbjct: 482 --------KSHKLSELCEQYLEGITCQNYDELGISKKQTIADLDIEKVAEYCGMDAYGTF 533 Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L+ L EQ L + + D G +D L++ ++ E + L Sbjct: 534 LLVEPLKNELQQVPTLEQLLLEVEQPLEAVLSIMEDTGILIDTEYLGKLSKELEQELSSL 593 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 +++ + ++L LF + L+ + +T Sbjct: 594 EKKAYD-AAEEKFNLGSPKQLGEILFEKLELNRKKSRKT--------------------- 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 ++ + +E + D + L++ S+ P + R H Sbjct: 632 ------KTGYSTDHATLEKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVNKKTKRIHT 685 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +Q +T +S+P+ I S +R I + LV AD + IE R+LA + Sbjct: 686 NFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYSQIELRILAHL 745 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + E L A++ ED++ T F ++T +R +GK + + Y G+ Q+ A Sbjct: 746 SQESVLLNAYQNAEDVHTVTAKLLF--EKEEITPQERNLGKTINFGVIYGMGS---QRFA 800 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ + N + + + EN + AI + ++ T R + Sbjct: 801 REAGVSATEGKEFI--NKYRQRYAKVFEYL----ENMKKEAIANGYVTTILGRRR----- 849 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 Y +NL R + Sbjct: 850 -------------------------------------YFNFFDDNLYRF----RGHDPQT 868 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTV 628 + N+ +N QL R +Q S DI+ M+ + +++L V Sbjct: 869 IDLNKLNINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILNYYQANLLLQV 922 Query: 629 HDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 HDE+V E P+ + + + M + +PL E Sbjct: 923 HDELVFEIPEKEWEELNHKIKETMENAVK--LTIPLVVE 959 >gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT] gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT] Length = 951 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 199/621 (32%), Gaps = 145/621 (23%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGE 114 LK LEN + V N ++ T+ N I ++ T++ + Sbjct: 429 QLKPLLENPSIQKVGQNIKYDLTI---FANHHIQLNGVCFDTMLQSYVLDSTGRHNMGAL 485 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + ++ E + + + K T + + A EY D +T ++ + Sbjct: 486 SERYLGHQVIEFESIAGKGKKQVTFDKI----------AIAQATEYAAEDADITMKLHQV 535 Query: 175 L------EP-----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P + E L + + G +D ++ + T L+Q++ Sbjct: 536 LWQELQQSPSLVKVFNDIELPLVKVLSKMERNGVLIDSQALLKQSEKIARRLTALEQQVY 595 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L+ LF + L + T + Q + + Sbjct: 596 QEA-GAEFNLASTKQLQEILFTKLALPIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLME 654 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G ++ P + R H Q + Sbjct: 655 HR--------------------------GLAKLKSTYTDKLPSMVNKKTGRVHTSYHQAV 688 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I C+R IA +G K++ AD + IE R++A ++ + Sbjct: 689 TATGRLSSSDPNLQNIPIKNEEGHCIRQAFIARKGYKIIAADYSQIELRIMAHLSQDNGL 748 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ +T A F + +VT +QR K + L Y + +++ G++ Sbjct: 749 IMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIS 805 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +A+ + + +P + R+K Sbjct: 806 R----------------ANAQKYMDLYFQRYP-----------GVQTFMVDIREKAK--- 835 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNR 577 Q + +T+ + L LP S R G R Sbjct: 836 ------EQGYVETLFGRR-----------------------LYLPEINSSNAIRRKGAER 866 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIV 633 +N Q + DI+ M+ K +++ VHDE+V Sbjct: 867 VAINAPM------------------QGTAADIIKLAMIAIHNEIKKNDIQMIMQVHDELV 908 Query: 634 CETPDT--DEFNASMLYHLMT 652 E + DE++A ++ LM Sbjct: 909 FEVKENKVDEYSA-LIKSLME 928 >gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002] gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002] Length = 887 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 116/698 (16%), Positives = 200/698 (28%), Gaps = 170/698 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFA--FGFDDHPVELWDCVHD-PVMPQVLKEA- 60 +D ET S + + L F + H +P+ L A Sbjct: 313 SLDTETTS------------LDQMEARLVGISFSVTEGEAAYLPLAHHYAGVPEQLDLAA 360 Query: 61 --------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 LEN + N ++R VL N I + +LA + L + Sbjct: 361 TLARLKPWLENPARKKLGQNLKYDRHVLA---NHGIALAGVADDTLLASYVIESHLTHNM 417 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT- 168 L+ + + E C + + Y D +T Sbjct: 418 DD------LARRHLGESTVSYEEICGKGAKQIG------FAEVDIAVASNYAAEDADITL 465 Query: 169 ---REIFKRLEPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 R + +LE + E + + + G +D + + + +L+Q Sbjct: 466 RLNRALAGKLEGRLASVYRDIELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLEQ 525 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAI 274 E G + ++L+ LF + G+ + + +T T + VL P Sbjct: 526 EAYQQA-GQPFNLNSPKQLQEILFGKLGIDTKGVKKTPSGGFSTDESVLEQLALDHPLPK 584 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + Q+ G ++ P P R Sbjct: 585 LIL-------------------------------QYRGLAKLKSTYTDKLPSLIRPDTGR 613 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q + +SDP+ I VR IA G ++V AD + IE R++ Sbjct: 614 VHTNYAQAVAITGRLSSSDPNLQNIPVRTAEGRRVREAFIAPPGHRIVSADYSQIELRIM 673 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ + L AF +GED++ TT A F V QVT +QR K + L Y A Sbjct: 674 AHLSDDANMLAAFASGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLIYGMSAF--- 730 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A+ + N + + ++ + +E E + G Sbjct: 731 GLAAQLDIERNAAQQYID--RYFMRFPGVADYMQRTREMAREQGYVETVFGRRL--YLPE 786 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R + + +A G A K + Sbjct: 787 IRASNP---GRRSGAERAAINAPMQGTAADLIKLAMI----------------------- 820 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 ++ G KL ++ VH Sbjct: 821 -------------AVQRWLVAEGLGSKL---------------------------IMQVH 840 Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 DE+V E P+ + L +M +PL AE Sbjct: 841 DELVLEVPEAELARVKERLPQIMAGVAE--LKVPLLAE 876 >gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399] Length = 931 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 126/706 (17%), Positives = 218/706 (30%), Gaps = 180/706 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDSMLASYIIESHLGHGL 459 Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + G L L + E C + A EY D Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621 G R+ +N Q + D++ M++ Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLVSDDLK 874 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 SKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVGGGLLDVPLVAE 920 >gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902] Length = 930 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 124/706 (17%), Positives = 218/706 (30%), Gaps = 179/706 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 352 NTIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 58 ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSA 108 K L N + + N +++ V N I ++ +LA + L Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHG 458 Query: 109 LKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + E L L + E C + A EY D Sbjct: 459 LDELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADF 505 Query: 168 TREIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + L + K+ E++ + + G +D A + + E KL Sbjct: 506 ALRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQ 272 +Q+ + + ++L+ LF + G+ + L +T T + VL P Sbjct: 566 EQQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + NR A + P P+ Sbjct: 625 PKIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKD 653 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q + +++P+ I VR A +G +V AD + IE R Sbjct: 654 GRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELR 713 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 714 IMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY- 772 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 +A + G++ + + + Sbjct: 773 --GLAKSLGIDNLSAKNFID---------------------------------------- 790 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + +R + + + EQ G RR L LP R+ Sbjct: 791 ----RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRN 831 Query: 568 LVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----G 621 G R+ +N Q + D++ M++ G Sbjct: 832 KNANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIG 873 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 874 SKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919 >gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13] gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13] Length = 994 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 108/642 (16%), Positives = 197/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 468 LKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMNPLS 524 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ H+M + A L PL+ + Sbjct: 943 HDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDA 984 >gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102] gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102] Length = 978 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 115/666 (17%), Positives = 225/666 (33%), Gaps = 140/666 (21%) Query: 33 FAFGFDDHPVELWDCVH--DPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85 +G V H + + L + LE+ D N+ F+R VLK C Sbjct: 410 CCWGMQPDEVAYIPLGHKTGENLHKDLVLEGLRPILESADYPKALQNAKFDRLVLK-CQG 468 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++ + +LA P + + L M+ G+ + K ++ L + Sbjct: 469 INL--AGVVFDPMLASYILNPDS------SHNL----MDLGQRYLGLIAK--SYLDLVPK 514 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTIND 194 K +YC D T + +L L EQ L + + Sbjct: 515 GKTIADIDIPSVADYCGMDAYSTFGLVPKLREELDKIPTLSKLLVEVEQPLEAVLAQMEY 574 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G ++ A L+Q ++ E +L +E + G + ++L LF + GL + Sbjct: 575 TGVRINSAYLKELSQHLETELARLKEEATKIA-GENFNLGSPKQLSQILFEKLGLSTKHS 633 Query: 255 TE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 + T ++ +KL + G + +++ Sbjct: 634 RKIQTGFSTDAATLEKLQED--------------------------DKSGFVEAIIEYRT 667 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 S+ P P R H + +Q T +S+P+ I S +R Sbjct: 668 LSKLKSTYVDALPALVRPDTQRVHTDFNQAATSTGRLSSSNPNLQNIPIRTAFSRQIRKA 727 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + G +V AD + IE R+LA ++ E ++A++ ED++ T F ++T + Sbjct: 728 FLPEAGWLMVAADYSQIELRILAHLSQEPILVQAYQQNEDVHTVTGRLVF--EKEKITSE 785 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 +R I K + + Y G+ + + +TG++ N +K Sbjct: 786 ERGIAKTINFGVIYGMGS---LRFSRSTGIDKNIANEFIK-------------------- 822 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR--- 544 + +++ +V ++ + + + I+ R+R Sbjct: 823 ---------------------RFNERYPKVFAYLEQVKKEAI-ALGYVETILGRRRYFDF 860 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 + K N + L ++L D G RS N +Q Sbjct: 861 TNNSLRRLKGSNPEDIDLSKLKNLGPYDAGLLRSAANAP------------------IQG 902 Query: 605 VSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAK 659 + DI+ M+ + ++L VHDE+V E P + E + +M + + Sbjct: 903 SNADIIKIAMVRLHEVLKNYQARLLLQVHDELVFEIPPDEWEELQPQIKSVMENAVQLSV 962 Query: 660 GLPLKA 665 L ++A Sbjct: 963 PLLVEA 968 >gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1] gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1] Length = 978 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTISSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413] gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413] Length = 977 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 123/692 (17%), Positives = 218/692 (31%), Gaps = 144/692 (20%) Query: 9 ETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVH--DPVMPQV-----LKE 59 ET D G+ D + I +G + H + Q L+ Sbjct: 385 ETPVAWDTETSGLEP--RDAALVGIGCCWGTEADASAYIPLAHTKGENLSQDIVLTALRP 442 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 LE+ D N+ F+R V I + + +LA P + L Sbjct: 443 ILESADYPKTFQNAKFDRLV---FLVQGINLTGVVFDPMLASYVLNPD------TSHNL- 492 Query: 120 SQKMEEGKELIARFCKGETHEC--LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +L R+ L + K YC V T ++ +L Sbjct: 493 -------TDLTQRYLGLTIQNYVDLVPKGKTIADINISAVANYCCLQVYATFQLVAKLRE 545 Query: 178 -----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L EQ L + T+ G +D A H L+Q ++++ KL ++ L Sbjct: 546 ELAKTPNLDKLLREVEQPLESVLATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQATELA 605 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L LF + GL + +T ++ +KL Sbjct: 606 -GEKFNLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQE------------- 651 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 ++ G + ++ S+ P P R H + +Q T Sbjct: 652 -------------VDETGFVNAITEYRTLSKLKSTYVDALPALVRPDTQRVHTDFNQTAT 698 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I S +R + G + AD + IE R+LA ++ E + Sbjct: 699 STGRLSSSNPNLQNIPIRTAFSRQIRKAFLPKSGWLMAAADYSQIELRILAHLSQEPLLV 758 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +A++ ED++ T F + D+R I K + + Y G+ K + +TG++ Sbjct: 759 QAYQQNEDIHTVTAKLVF--EKDDINSDERRIAKTINFGVIYGMGS---LKFSRSTGIDK 813 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 N +K + + E + AI ++ T R + Sbjct: 814 NVANEFIK------RFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFNFDS------ 861 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + K N + L ++L +D G RS Sbjct: 862 ---------------------------TSLLNLKGSNPEDIDLSKLKNLGAKDAGLLRSA 894 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEIVCE 635 N +Q S DI+ M+ K ++L VHDE+V E Sbjct: 895 ANAP------------------IQGSSADIIKIAMVQIHEVLKKYQARLLLQVHDELVFE 936 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666 P + + +M + +PL + Sbjct: 937 VPPQEWAELQPQIKSVMENAVK--LSVPLVVD 966 >gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355] Length = 908 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 124/706 (17%), Positives = 218/706 (30%), Gaps = 179/706 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 330 NTIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379 Query: 58 ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSA 108 K L N + + N +++ V N I ++ +LA + L Sbjct: 380 DVLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHG 436 Query: 109 LKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + E L L + E C + A EY D Sbjct: 437 LDELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADF 483 Query: 168 TREIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + L + K+ E++ + + G +D A + + E KL Sbjct: 484 ALRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 543 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQ 272 +Q+ + + ++L+ LF + G+ + L +T T + VL P Sbjct: 544 EQQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 602 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + NR A + P P+ Sbjct: 603 PKIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKD 631 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q + +++P+ I VR A +G +V AD + IE R Sbjct: 632 GRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELR 691 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 692 IMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY- 750 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 +A + G++ + + + Sbjct: 751 --GLAKSLGIDNLSAKNFID---------------------------------------- 768 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + +R + + + EQ G RR L LP R+ Sbjct: 769 ----RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRN 809 Query: 568 LVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----G 621 G R+ +N Q + D++ M++ G Sbjct: 810 KNANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIG 851 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 852 SKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 897 >gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012] gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012] gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74] Length = 449 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 117/341 (34%), Positives = 168/341 (49%), Gaps = 17/341 (4%) Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHE 140 L P+ RW T+V A ++GLP +L + E L + K +EGK LI FCK Sbjct: 1 MPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKN 60 Query: 141 CLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYLDQTINDRGY 197 R H E WR F Y D+ RE++ RL + + E LW+ DQ INDRG Sbjct: 61 SKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGV 120 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 C+D+ LA + VD E+ +L + + +T G V ++ + L + G+ L D+ + Sbjct: 121 CMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRS 180 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T +R +++ L ++ R++AS ++ K L++ ++ DGRLRGTLQF GASRTG Sbjct: 181 TLERRIAN-PDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTG 239 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS----EG 373 RW+G +F PQNLPRPS E++D+ I P + LQI S V + S Sbjct: 240 RWAGRLFQPQNLPRPSLKQEQIDEGIEA-PNAAAKTLKCLQIASGAVYTDDAGSWSELHD 298 Query: 374 KKLVVADLAGIEARVLAWMAGEQW------KLKAFETGEDL 408 KL D EA + W LKAF G L Sbjct: 299 TKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 339 >gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136] Length = 930 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 124/705 (17%), Positives = 218/705 (30%), Gaps = 179/705 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K L N + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 Q+ + + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QQAYAAAD-QPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622 G R+ +N Q + D++ M++ G Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVRNCLSDGIGS 874 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +V+ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 KLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 919 >gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C] Length = 968 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 103/628 (16%), Positives = 209/628 (33%), Gaps = 132/628 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LEN V + N ++ V+K +I + + T++L+ AL+A Sbjct: 442 LKPILENQAVLKIGQNIKYDWLVMKQH---NIVMCSFDDTMLLS------YALEAGISTH 492 Query: 117 KLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + G + I+ K TH + R + Y D +T +++ L Sbjct: 493 GMDVLSERWLGHKPISY--KDLTHS--RRKIVSFARVDLKQATLYAAEDADITLRLWQVL 548 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + + L + + +RG VD + L+ + L +E+ L Sbjct: 549 KPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQTVLNLGEEIYQL 608 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF + GL T++ + + + Sbjct: 609 -VGEKFNIASPKQLGDILFGKMGLPGGTKTKSGQWSTSAQTLEELAAEGHILP------- 660 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R + + ++ P LP R H T Sbjct: 661 -------------------RKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATTL 701 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ I +R+ +AS+G L+ AD + IE R+LA +A + Sbjct: 702 TGRLSSSEPNLQNIPVRTAEGRKIRAAFVASKGHLLLSADYSQIELRILAHVADITALKE 761 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T ++ F VA +T + R K + + Y +AS G++ Sbjct: 762 AFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPF---GLASQLGISRK 818 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + ++ + + Sbjct: 819 EASDYI-----------------------------------------QLYFERFPGIEDY 837 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 I AR V ++ GR + Y ++ ++ + Sbjct: 838 ------------MERTKIFARHYGYVETIF--------------GRRIHYPEIKTDKPQI 871 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 + + G + I +A+ I E + + ++L VHDE++ E P ++ Sbjct: 872 RSFNERAAINAPIQGSAADIIRRAM---IQMENALEKERLSAKMLLQVHDELIFEVPKSE 928 Query: 641 EFNASM-LYHLM--TSNPSWAKGLPLKA 665 ++ + +M + P+ + +PL+ Sbjct: 929 SKKTTILIKKVMENATMPALSLSVPLEV 956 >gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem] gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem] Length = 892 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 110/626 (17%), Positives = 189/626 (30%), Gaps = 108/626 (17%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH-----DPVMPQ--- 55 ID ET S + + P H +P+ Sbjct: 318 IDLETTSLNPR------------EARVVGYAVSCRPHEARYIPVGHRYLGAPEQLPEALV 365 Query: 56 --VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 +L L++ + N ++ VL+ + C +LA P+ + Sbjct: 366 LEILGPLLKDPARRKIGQNLKYDYQVLRMA---GFEMEGIWCDTMLAAYLVNPARNSQGL 422 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 AL+ +M E+ G Y D T + Sbjct: 423 DALALEYLDHRMISYAEVA----------GSGKCELNFSEVDLDRAGPYSCEDADATYLL 472 Query: 172 FKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P L E L + + G +DV L L+ + +L+ + Sbjct: 473 HEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSAGFGKQLIELEAQ 532 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276 + G + ++L LF GL + T+ +T L + A Sbjct: 533 IHEHCGG-PFNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVA--- 588 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R LQ+ S+ P P R H Sbjct: 589 ----------------------------RLLLQYRSISKLKSTYTDALPKLVDPATGRVH 620 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 +Q +T +SDP+ I +R IA G ++ AD + IE RVLA Sbjct: 621 TSYNQAVTSTGRLSSSDPNLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAH 680 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ +AF GED++ T + F + P VT + R KV+ + Y GA + Sbjct: 681 LSGDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSL--- 737 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER--VKKA 509 A G+ + + + R ++ A F+ T R Sbjct: 738 AKELGVTPKQAKAFIDSYFERH------SGARSFLDSCIREAEVCGFVTTIMGRRLCIPE 791 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 K+ V A I+ A I + + M++++ L++ LV Sbjct: 792 IASKNGNVRAF--AQRNAVNYPIQGSAADIIKAAMLRVIRRMQQERVASRLIMQVHDELV 849 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGG 595 + R + +L R G Sbjct: 850 FEVPEAERDLME----ELVRTEMEGA 871 >gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13] gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653] gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653] Length = 978 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 108/642 (16%), Positives = 197/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMNPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 818 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 856 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 857 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ H+M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDA 968 >gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614] gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614] Length = 996 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 111/642 (17%), Positives = 193/642 (30%), Gaps = 152/642 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 VLK LE+ V +A N ++ V+ +DI T++L+ + + E Sbjct: 468 DVLKPMLEDRSVLKIAQNLKYDWLVMTRY-GIDITPFD--DTMLLSYTVDAGKGGNGMDE 524 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 LS + ++ C +D+ A Y D VT ++ Sbjct: 525 ---LSERWLDHKPIPFKEICGSGKSMITFDK------VAIDKATAYAAEDADVTLRLWLI 575 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P + E+ + + + RG VD + L+ + E+ Sbjct: 576 LKPRLASERMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGEFAQGMAGKESEIYE 635 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF + GL T+T T +VL ++ + Sbjct: 636 LA-GENFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDLAAEGHELPSRIVSW 694 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P P R H Sbjct: 695 RQL-------------------------------SKLKSTYTDALPGYINPETGRVHTSY 723 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T +S+P+ I +R IA +G KL+ AD + IE RVLA MA Sbjct: 724 ALAATTTGRLSSSEPNLQNIPVRTEEGRKIRKAFIAEKGHKLISADYSQIELRVLAHMAD 783 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 KAF+ G D++ T + F + R K + + Y A +A+ Sbjct: 784 IPQLKKAFDDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINFGIIYGISAF---GLANQ 840 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + K + ++ Sbjct: 841 LGISRGEAGDYI-----------------------------------------KTYFERF 859 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + + I RK + P+ R+ Sbjct: 860 PGIKDYMEAIKKQV-HANGYVTTIFGRKAHYPEVNTKN----------PNMRAFY----- 903 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 R+ +N +Q + DIL M+ K ++L V Sbjct: 904 -ERAAINAP------------------IQGSAADILRRAMVRMENRLEGSKLDAQMLLQV 944 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E PD E ++ +M + A L PL+ + Sbjct: 945 HDELIFEVPDAQVETTIPVIKDVMENACDPALKLSVPLQVDA 986 >gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT] gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT] Length = 910 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 113/688 (16%), Positives = 203/688 (29%), Gaps = 152/688 (22%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------- 57 +D ET S + ++ +F + HD PQ L Sbjct: 337 LDTETTSLDPMQ----------AKLVGMSFSVEAGKAAYVPLAHDYTGAPQQLDFTAALR 386 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + LE+ + + N +++ VL + + TL+ + A Sbjct: 387 QLRPMLEDASIPKLGQNLKYDKHVLANH-GIALN-GITHDTLLQSYVLESHRTHGMDDLA 444 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 ++ + +++ + K + + + E +L Sbjct: 445 MRHLGVQTVTYEQIAGKGAKQVPFSQISIETAAEYAAEDADITLQLHQALYPQIEADDKL 504 Query: 176 EPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E L + TI G +D A+ + + + L+Q+ + G + Sbjct: 505 AFVYREIEMPLLDILYTIERNGVLIDQAMLQAQSHEIGQKLIDLEQQAYDIA-GQPFNLG 563 Query: 235 CLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L+ LF + G+ +T + VL P + Sbjct: 564 SPKQLQEILFGKLGIKPLKKTPSGAPSTDEDVLQELALDYPLPKVLLE------------ 611 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + G ++ P P R H Q + Sbjct: 612 -------------------YRGLAKLKSTYTDKLPRMINPATGRVHTSYSQAVAITGRLA 652 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +SDP+ I +R IA G ++ AD + IE R++A ++ ++ L AF G Sbjct: 653 SSDPNLQNIPVRTAEGRRIREAFIAPPGASIISADYSQIELRIMAHLSQDEGLLSAFAKG 712 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T A F V +V+ +QR KV+ L Y A +A + + Sbjct: 713 EDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMSAF---GLAQNLNIERGAAQNY 769 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + A R +N A E V + Sbjct: 770 IDRYFARYP------GVREYMQNTRMLAKE------------------QGYVETFF---- 801 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 +R VP + P+G R G R+ +N Sbjct: 802 ---------------GRRLWVPEINS-----------PNGM----RRAGAERAAINAPM- 830 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639 Q + D++ M+ + I++ VHDE+V E PD Sbjct: 831 -----------------QGTAADLIKLAMIAVDRWLREHNLNSKIIMQVHDELVLEVPDA 873 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E L LM +PL AE Sbjct: 874 ELELVQQTLPQLMQGVAK--LDVPLLAE 899 >gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121] gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121] Length = 925 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 115/675 (17%), Positives = 208/675 (30%), Gaps = 158/675 (23%) Query: 28 VCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFER 77 ++ F+ + HD P+ L K LE+ V + ++ Sbjct: 364 AELVGFSVSVEAGKAAYIPVAHDYEGAPEQLDRDWVLEQIKPVLEDASQLKVGQHLKYDA 423 Query: 78 TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 VL N DI + +L N + A K S K +E+ + K Sbjct: 424 NVLA---NYDIELKGIEFDTMLESYIFNSTANRHDMDSLAKKFLSHKSVSFEEIAGKGAK 480 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----REIFKRLEPLSS-------KEQE 184 +T + Y D +T + I+ +LE E Sbjct: 481 QKTFNQI----------ELEQAAFYAAEDADITFRLHQAIWAKLEKTPELVSIFKEIELP 530 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G +D L H + + +L+ + + G + ++L+ LF Sbjct: 531 LVPVLAKMEQTGALIDPDLLHEQSSEIATRLEELEIKAHEMA-GQAFNLSSPKQLQEILF 589 Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 ++ L + T P ++ + Sbjct: 590 VKLELPILKKTPKGQPSTAE------PILQELALDYELP--------------------- 622 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 R ++ S+ P + + R H Q +T ++DP+ I Sbjct: 623 RIIMEHRSLSKLKSTYTDKLPEM-IQKTGRIHTSYHQAVTATGRLSSTDPNLQNIPIRTA 681 Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R IA EG KL+ AD + IE R+++ ++ + L+AF +D++ T A F V Sbjct: 682 EGRRIRQAFIAPEGYKLIAADYSQIELRIMSHLSQDPGLLEAFANNKDVHKATAAEVFEV 741 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 A +VT +QR K + L Y A +A G+ +A+ Sbjct: 742 ALDEVTGEQRRRAKAINFGLIYGMSAF---GLAKQLGIGR----------------PEAQ 782 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + E +P +T + Sbjct: 783 KYIQRYFERYP-------------------------------------GVRTYMENTREM 805 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 AR++ V ++ GR L D+ N RQ Sbjct: 806 AREKGYVETLF--------------GRRLYLPDIK----ASNAMMRQAAER-----TAIN 842 Query: 600 NIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 +Q + DI+ M+ T ++L VHDE++ E ++D + +M Sbjct: 843 APMQGTAADIIKRAMIEMHAWLKDTDLDIKMILQVHDELIFEVKESDLSAAQEKILDIME 902 Query: 653 SNPSWAKGLPLKAEG 667 + A +PL E Sbjct: 903 NTS--AIDVPLLVEA 915 >gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49] gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49] Length = 949 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 102/607 (16%), Positives = 207/607 (34%), Gaps = 86/607 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVA 70 D G+ ++ AF ++ + Q + E L E T++ + Sbjct: 381 DTETTGLNP--LTAELVGIAFSWEAGKGFYIAFPKEKEAAQEIIELLRPFFEATEIEKIG 438 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VL+ DI + + +LA P A + EL Sbjct: 439 QNLKYDLKVLRKY---DIVVKGQLFDTMLAHYLINPDMRHNMDILAETYLNYTPVSITEL 495 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I + K + R+ P + EY D +T ++ + + Sbjct: 496 IGKKGKNQKS----MRDVPVADQ-----TEYAVEDADITLQLKEHFSKELGEANTQKLFT 546 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +D ++L+ ++ + L++ + + G + ++L Sbjct: 547 DIEVPLLRVLAAMEAEGINLDKTFLNSLSDDLESDIASLEKNIYAEA-GEEFNIASPKQL 605 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T+T T + VLS+ K V R Sbjct: 606 GEILFGKMKLVEKPKKTKTGQFSTAEDVLSALAKDHKIIADVLEYR-------------- 651 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 G ++ P Q P R H + Q + +++P Sbjct: 652 -----------------GLAKLKSTYVDALPLQVEPATQRVHTDYMQTVAATGRLSSNNP 694 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR + E L+ AD + IE R++A ++ E+ ++AF+ GED+ Sbjct: 695 NLQNIPIRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSQEETMMEAFKNGEDI 754 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T ++ F+V +VT++QR+ K + + Y A +++ T L+ L+ Sbjct: 755 HASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTSLSRGEAKELIDA 811 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 E + +++ ++ + +G ++ + + + + Sbjct: 812 YY--ETYPKLKHYMSEQVNFARDNGYVETIMGR-----RRYLNAINGSNAIVRGAAERNA 864 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 G A K + +Y K ++ N ++L LV+ DV + T + Sbjct: 865 VNAPIQGSAADIIKIAMI-NIYRKLEEGNYKTKMLLQVHDELVF-DVHKDELDEMKTMIK 922 Query: 587 LTREYTY 593 E Y Sbjct: 923 HEMENAY 929 >gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] Length = 985 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 110/642 (17%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ V +A N ++ +++ I + T++++ P + Sbjct: 459 LKTVLEDASVLKIAQNMKYDWLIMRRY---GINTVSFDDTMLISYVLDAGTGSHGMDPLS 515 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 516 ERWLGHTPIAYKDVAGSGKSSV-----------------TFDMVDIDRATAYAAEDADVT 558 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 559 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 618 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ L G + ++L LF + GL T+T T +VL P Sbjct: 619 EDEIYELA-GERFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 677 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P Sbjct: 678 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPATR 706 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 707 RVHTCYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 766 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 767 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 824 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 825 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 863 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 864 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQIRAF 891 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + K ++L V Sbjct: 892 ------NERAAINAPIQ---------GSAADIIRRAMIR---MEDALAKEKLAARMLLQV 933 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E S++ H+M + A L PL + Sbjct: 934 HDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLAVPLHVDA 975 >gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17] gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17] Length = 920 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 116/705 (16%), Positives = 214/705 (30%), Gaps = 178/705 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDP--VMPQVL 57 L +D ET S + ++ +F ++ + + + + Sbjct: 348 KILSLDTETTSTNAIE----------AELVGLSFAVEERKAFYVVIPANREEALKIVAIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 K E+ ++ V N ++ VL+ + + + ++A P + + E Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVLRHY---GVEVAGPMFDTMIAHYLLQPELRHNMDYMAE 454 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172 L + +E ELI RN+ N R+ EY D +T + Sbjct: 455 VYLGYRTVHIE---ELI----------GPRGRNQKNMRDLSPTDIYEYACEDADITLRLK 501 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 LEP + E L + + G C+D H +++ + T ++Q + Sbjct: 502 NVLEPKLDEAGVARLFRDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTAIEQHI 561 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 L G + ++ LF + + T+T T + VL + +P ++ Sbjct: 562 YELA-GEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEIL 620 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G + P PR R H Sbjct: 621 -------------------------------NYRGLKKLLSTYVDALPKLINPRTGRIHT 649 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +Q +T +SDP+ I +R C I G AD + IE R++A + Sbjct: 650 SFNQTVTATGRLSSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHL 709 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ ++AF G D++ T AR ++ +VT +R K + Y +A Sbjct: 710 SEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTY---GLA 766 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 ++ L+ Sbjct: 767 QRMDISNGEARDLIDGYFL----------------------------------------- 785 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 RV + QA E + G A RR LP S Sbjct: 786 TFPRVEA---YMEQAKETARKQGYAETLFHRRRY---------------LPDINSHNATV 827 Query: 573 VGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625 G R+ +N +Q DI+ M+ + ++ Sbjct: 828 RGFAERNAINAP------------------IQGSEADIIKVAMVRIHRRFKAEGIRSKMI 869 Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 L VHDE+ P+ E ++ M ++ +PL A+ G+ Sbjct: 870 LQVHDELNFSVFPEEKEQVERIVVEEMQG--AYKLRVPLVADAGW 912 >gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] Length = 941 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 95/615 (15%), Positives = 190/615 (30%), Gaps = 102/615 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L ID ET S + ++ +F ++ + + Sbjct: 369 KILSIDTETTSAEPME----------AELVGMSFSDTENQAYYVPVPAEREEALKIVNEF 418 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN V N ++ VL+ N + + + ++A P + + E Sbjct: 419 RPLYENETSMKVGQNIKYDILVLQ---NYGMEVKGELFDTMIAHYVLQPELRHNMDYLAE 475 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E R+ P +Y D VT ++ Sbjct: 476 IYLHYQTIHIDE-------LIGPRGKNQKNMRDLPP-----EEVYKYACEDADVTLKLKN 523 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE K E L + + G +D ++ V ++++E+ Sbjct: 524 VLEEELKKQGVEHLFYEIEMPLVRVLANLESNGVRIDTEALKQTSEHFTVRLQEIEKEIY 583 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-------QRVLSSNKKLTPQAIQV 276 L + +++ LF + L + D + T + VL S + ++ Sbjct: 584 ELA-EETFNIASPKQVGEILFDK--LKITDKAKKTKTGQYVTSEEVLESLRNKHEIIGKI 640 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + G + P PR R H Sbjct: 641 LE-------------------------------YRGLKKLLGTYIDALPLLINPRTGRIH 669 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 +Q +T +S+P+ I +R I +G + AD + IE R++A Sbjct: 670 TSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAH 729 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ ++ + AF +G D++ T A+ + V VT D R K + Y + Sbjct: 730 LSEDKNMIDAFLSGYDIHAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYGISIF---GL 786 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A ++ L+ + + R + + A E ++ T R K+ Sbjct: 787 AERMNVDRKEAKELIDG------YFETYPQVREYMDKSIQIAREQGYVETIFHR-KRFLP 839 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLV 569 +SR + + + G A K + +Y + NNL ++L L Sbjct: 840 DINSRNATVRGYAERNAINAPIQGSAADIIK-VAMARIYKRFQSNNLKAKMILQVHDELN 898 Query: 570 YRDVGNNRSYLNTTT 584 + + ++ Sbjct: 899 FSVPEAEKEFVQQIV 913 >gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4] gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4] Length = 949 Score = 275 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 104/679 (15%), Positives = 198/679 (29%), Gaps = 149/679 (21%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70 D G+ + D+ + F F + D + + K EN + + Sbjct: 382 DTETTGLDMFTSDLVGMSFCFA--EGEAYYVSLPEDKTESKEVLREFKAFFENDRIEKIG 439 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N F+ +L + I + + ++A P A + + ++L Sbjct: 440 QNMKFDLLML---WQYGIELKGKLFDTMIAHYLVQPELRHGMDYLAEIYLNYRTIHFEDL 496 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---------- 179 + K + D NK +Y D VT + + LE Sbjct: 497 VGAKGKNQADIRTVDINK---------LCDYAAEDADVTFRLKQILEKELKADALENLFY 547 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + T+ G +D + I+ E KL++E+ L G + ++ Sbjct: 548 EIEMPLMQVLATMEHTGVRIDSEALRQSSVILTDEMLKLEKEIHQLA-GYEFNVSSPMQV 606 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF L L+D + T S+++ + L L Sbjct: 607 GEILFDR--LKLDDKAKKTKTGQYSTSEDI---------------------LEKLQSKHP 643 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 G++ L + G + P P + H +Q + +++P+ I Sbjct: 644 IIGKI---LDYRGLKKLLSTYIDALPQLISPITGKVHTSYNQTVAATGRLSSTNPNLQNI 700 Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R I AD + IE R++A ++G++ L+AF +G D++ T A Sbjct: 701 PIRDAQGKEIRKAFIPDADCLFFSADYSQIELRIMAHLSGDKNMLEAFNSGHDIHTATAA 760 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + + + +VT D R K + Y ++ Sbjct: 761 KIYKIPLEEVTSDMRRKAKTANFGIIYGISVFGL-------------------SDRLSIP 801 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 +A+ +P ++ + A ++ E Sbjct: 802 RAEAKELIEGYFATYP----------------------------DVKKYMDNAIQKAKEM 833 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G R+ LP S N+ R Sbjct: 834 GYVETLLGRK---------------RFLPDINSQ------------NSIVRGFAERNA-- 864 Query: 595 GKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASML 647 +Q + DI+ M+ + + VHDE+ P + E + Sbjct: 865 ---INAPIQGTAADIIKIAMVRIQNRLENESLQAKMTMQVHDELNFTVPKNELEALQKAV 921 Query: 648 YHLMTSNPSWAKGLPLKAE 666 M + +PL A+ Sbjct: 922 IEEMENAIK--LQVPLIAD 938 >gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] Length = 994 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLL 686 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 834 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 868 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 869 AFAREHGYVETIF-------------------GRRTHYPDIRASN---------PQVRAF 900 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984 >gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] Length = 954 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 105/634 (16%), Positives = 196/634 (30%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGE 114 LK LEN ++ + N ++ T+ I + T++ + + Sbjct: 431 QLKPILENPNIRKIGQNIKYDLTIFAR---NGIELQGVAFDTMLQSYTLDSTGRHNMDNL 487 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + +EL + T + + EY D +T ++ + Sbjct: 488 AERYLGHQTIPFEELAGKGKHQLTFDQI----------ELDKATEYAGEDAEITMKLHQL 537 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L K E L + + G +D A + ++ +L+ + Sbjct: 538 LWSELQKTPELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVH 597 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G V + ++L+ LF + GL + T + Q + Sbjct: 598 QEA-GEVFNLASTKQLQEILFNKLGLPILKKTPKGAPSTNEEVLEELAQMGHQVPVLLME 656 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R G S+ P + R H Q + Sbjct: 657 HR--------------------------GLSKLKSTYTDKLPQMINAQTGRVHTSYHQAV 690 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA +G ++ AD + IE R++A +A + Sbjct: 691 TATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIMAHLANDANM 750 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +KAF G+D++ +T A F V VT +QR K + L Y +A+ G++ Sbjct: 751 IKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEF---GLANQLGIS 807 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 DA+ + + +P A ++ R+K Sbjct: 808 RT----------------DAKKYMELYFQRYP-----------AVQQFMLDIREK----- 835 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + +T+ GR L ++ ++ Sbjct: 836 ----AAEKGYVETLF-------------------------------GRRLYLPEINSS-- 858 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 N R+ +Q + DI+ M+ +A +++ VHDE+V Sbjct: 859 --NQMRRKAAERVA-----INAPMQGTAADIIKVAMIGIDQAVRNCEDIAMIMQVHDELV 911 Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E D E ++ M +PL AE Sbjct: 912 FEVKADRVEHYTQLIKAEMEKAIE--LKVPLIAE 943 >gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21] gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21] Length = 892 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 112/617 (18%), Positives = 191/617 (30%), Gaps = 106/617 (17%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ--- 55 ID ET S + + P E W +P+ Sbjct: 318 IDLETTSLNPR------------EARVVGYAASCRPHEAWYIPVGHRYLGAPEQLPESLV 365 Query: 56 --VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 +L L++ + N ++ VL+ + C +LA P+ + Sbjct: 366 LEILGPLLKDPARRKIGQNLKYDYQVLRIA---GFELEGIWCDTMLAAYLVNPARNSQGL 422 Query: 112 VGEALKLSSQKMEEGKELIARF-CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 AL+ +M E+ C+ E DR P Y D T Sbjct: 423 DALALEYLDHRMISYAEVARSGKCELNFSEVDLDRAGP-----------YSCEDADATYL 471 Query: 171 IFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + L P L E L + + G +DV L L+ + +L+ Sbjct: 472 LHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIELEA 531 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQ 275 ++ G + ++L LF GL + T+ +T L + A Sbjct: 532 QIHEHCGG-PFNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVA-- 588 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R LQ+ S+ P P R Sbjct: 589 -----------------------------RLLLQYRSISKLKSTYTDALPKLVAPATGRV 619 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H +Q +T +SDP+ I +R IA G ++ AD + IE RVLA Sbjct: 620 HTSYNQAVTSTGRLSSSDPNLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLA 679 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++G++ +AF GED++ T + F + P VT + R KV+ + Y GA + Sbjct: 680 HLSGDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSL-- 737 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER--VKK 508 A G+ + + + R ++ A F+ T R Sbjct: 738 -AKELGVTPKQAKAFIDSYFERH------SGARSFLDSCIREAEVCGFVTTIMGRRLCIP 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 K+ V A I+ A I + M++++ L++ L Sbjct: 791 EIASKNGNVRAF--AQRNAVNYPIQGSAADIIKAAMLRVNRRMQEERVASRLIMQVHDEL 848 Query: 569 VYRDVGNNRSYLNTTTR 585 ++ R + R Sbjct: 849 IFEVPEGERDLMEELVR 865 >gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4] gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4] Length = 892 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 121/704 (17%), Positives = 211/704 (29%), Gaps = 175/704 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57 +D ET S L ++ +F F +H H P P L Sbjct: 314 RAFAVDLETTSLNPLE----------AEIVGISFSFREHEAYYIPVGHRYPGAPHQLSRD 363 Query: 58 ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--AL 109 K L + + + N ++ VL+ I + C +LA P+ + Sbjct: 364 DVLGALKPLLLDPEKHKIGQNIKYDYQVLRRA---GIDMQGIWCDTMLASYLLNPTRTSQ 420 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A++ +M E+ + +N Y D T Sbjct: 421 GLDSLAVEFLDHRMISYAEVAGK--------GKEQKNFAQ--VEVEKASVYSCEDADATY 470 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K P ++ E L + + G +D+ L L+ + L+ Sbjct: 471 LLHKLFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLLQRLSDGFGGQLADLE 530 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274 +E+ +L G + ++L LF L + T+T T L A Sbjct: 531 REIFALAGG-EFNVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNVDELERLAGEHEIA- 588 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 R LQ+ S+ P R Sbjct: 589 ------------------------------RLILQYRSLSKLKSTYTDALPKLVDAASGR 618 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T+ +S+P+ I +R IA+EG L+ AD + IE RVL Sbjct: 619 VHTSYNQAVTNTGRLSSSEPNLQNIPIRSEEGRSIRHAFIAAEGCLLLSADYSQIELRVL 678 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ ++ AF ED++ T A F + P VT++ R K + + Y G AF Sbjct: 679 AHLSADRVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTINFGVIY--GQGAFS 736 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 A E + Sbjct: 737 L------------------------------------------ARELGVSTKVAKEFIDN 754 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + +H+ + + E D + +L GR L Sbjct: 755 YFARHAGARTFLDGCVREAE------------------------DNGYVTTIL--GRRLP 788 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYD 623 D+ ++ N R + +Q + DI+ + M+ Sbjct: 789 IPDIKSS----NGNIRAFAQRNA-----VNYPIQGSAADIIKQAMVRVVDRMEREGMKSR 839 Query: 624 IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E P+ ++ ML H M + +PL+ + Sbjct: 840 LIMQVHDELVFEVPEEEKLAMEMLVKHEMEHAVT--LRVPLRVD 881 >gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus] Length = 923 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 118/697 (16%), Positives = 217/697 (31%), Gaps = 167/697 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 ID ET + +D + AE ++ F+ FD H+ Sbjct: 350 HFAIDIET-TSLD------YRIAE---MVGFSIAFDAQDAYYVPLAHNYENAPQQLNREQ 399 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 + +K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDTMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+P E L+ ++ + + G +D A L+ R L+ Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTREGLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T ++++N+ + + +P + Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKVLPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E E + + +M S +PL E Sbjct: 878 ELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVE 912 >gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] Length = 944 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 121/671 (18%), Positives = 228/671 (33%), Gaps = 158/671 (23%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMP--QVLKEALE 62 D ET S +L ++ +F + D V+ ++ + E Sbjct: 377 DTETTSLNELE----------AELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIFRPFFE 426 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 D+ VAHN F+ VLK DI + + ++A P Sbjct: 427 KEDLLKVAHNLKFDYKVLKQY---DITVKGAMFDTMIAHYLLNPDG-----------RHG 472 Query: 123 MEEGKELIARFCKGETHECLYDRNKP---NHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 M+ E+ + + + K R +Y D VT ++++ P Sbjct: 473 MDYLSEVYLNYKPVSIETIIGKKGKKQGNFRDADLRTQTDYAAEDADVTFQLYELFAPQL 532 Query: 180 SKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 KE L + + G +D + ++ + L+ ++ L+ G Sbjct: 533 KKENLEELFYNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKGLEAKIFELS-GE 591 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + +L LF + +L P+A + + S + Sbjct: 592 EFNMNSPRQLGEILFEKM--------------------QLDPKAKKTKTGQYATSEDVLQ 631 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 KL++ E ++ L++ + P Q +R H Q Sbjct: 632 KLSSKHEI------IKHILEYRTYQKLKSTYVDALPSQIDKDDNRVHTNFSQTTAATGRL 685 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + +P+ I +R ++ EGKK++ AD + IE R++A ++GE+ +KAF+ Sbjct: 686 ASVNPNLQNIPIRTLRGQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQD 745 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ +T A+ F + A+V+K QR+ K + + Y GA A A TGL+ Sbjct: 746 GEDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGIIYGQGAFAL---AEQTGLSRTE--- 799 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+ E +P+ +K+ ++ ++ +L Sbjct: 800 -------------AKQMIEAYFETYPK--------------LKEYMAEQVNKARQL---- 828 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + I+ RKR + + NN ++ + R+ Sbjct: 829 --------GYVETILGRKRHLKDI-----NSNNFVVRGHAERN----------------- 858 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPD 638 VQ + DI+ M+ + + ++L VHDE+V E P Sbjct: 859 ------------AVNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDELVFEAPA 906 Query: 639 TDEFNASMLYH 649 + +AS L Sbjct: 907 DEIESASHLIR 917 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 104/540 (19%), Positives = 208/540 (38%), Gaps = 47/540 (8%) Query: 1 MATLFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + T + ET + + D+ G+ + + L + PV L + + L+ Sbjct: 56 LVTALKELETHTVVGLDIETTGLDPHTS--EISLIQIAAPNRPVILIE-FRSITHKESLR 112 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEAL 116 +E+ + V HN FE L ++ WI T+++A+ GLP L+ +A Sbjct: 113 RFIEHHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAG 172 Query: 117 KLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L +Q ++ K+L +RN P R+ + + ++ Sbjct: 173 VLPIPNLNQSIKNKKKLKQEL----------NRNLPGSYSLMRVAARELGYSLDKSLQVS 222 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCV---DVALAHTL-NQIVDVERTKLDQELESLTYG 228 +PL+ ++ + ND + D + + NQ+ D + +L G Sbjct: 223 DWGKPLTQEQLQY-----AANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMG 277 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT----PQAIQVFNNRMRAS 284 L+ L++ L E ED + C+ + + +L +I + +N + Sbjct: 278 LMGMGLDLDRWGE-LAKEIETRREDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIA 336 Query: 285 RSAVLKLNTLVEAMNSDGRLR-------GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 A L ++T + ++ +L +++ S+ G P P R H Sbjct: 337 ALARLGIHTNSTSKDTLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHP 396 Query: 338 ELDQIITHLPTSITSDPDPLQIIS-DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 ++Q+ S+P+ QI RSC + + G KL++AD + IE R+ A +A + Sbjct: 397 NVNQMRAASGRFSFSNPNLQQIPRERQYRSCFVPASGYKLIIADYSQIELRIAAEIANDS 456 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TT 455 + A+ +DL+ T A +VTK +R +GK + L Y GA + A Sbjct: 457 VMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYGMGATKLRIYAETNY 516 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ ++ ++ + + + + ++D I T R+++ W+ + Sbjct: 517 GVKMSIEEAQRFRDNFFKGYPGLHQWHQDTAFKLRTTKVKD--IRTLSGRLRR-WKDEPP 573 >gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] Length = 952 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 96/597 (16%), Positives = 193/597 (32%), Gaps = 97/597 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59 L ID ET + ++ +F ++ + + + Sbjct: 381 LSIDTETTGTEPME----------AELVGMSFSNAENRAYYVPVPANRDEALKIVNEFRP 430 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA- 115 EN + V N ++ VL+ N + + + +LA P + + E Sbjct: 431 LYENENSMKVGQNIKYDMIVLQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ + ++E R+ P Y D VT ++ L Sbjct: 488 LRYRTIHIDE-------LIGSRGKNQKSMRDLPPED-----VYRYACEDADVTLKLKNVL 535 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E K E L + I G +D ++ + ++++E+ +L Sbjct: 536 EKELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYAL 595 Query: 226 TYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 G + +++ LF + + T+T T + VL S + ++ Sbjct: 596 ANGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILE-- 653 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + G + P PR R H + Sbjct: 654 -----------------------------YRGLKKLLSTYIDALPQLINPRTGRIHTSFN 684 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +S+P+ I +R I +G + AD + IE R++A ++ + Sbjct: 685 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQD 744 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF +G D++ T A+ + V ++VT D R K + Y +A Sbjct: 745 RNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVF---GLAERM 801 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ L+ + + + + + A E+ ++ T R K+ +S Sbjct: 802 NVSRQEAKELIDG------YFETYPQIKEYMDKSIQVARENGYVETIFHR-KRFLPDINS 854 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570 R + + + G A K + L+Y + NNL ++L L + Sbjct: 855 RNAVVRGYAERNAINAPIQGSAADIIK-VAMSLIYQRIQSNNLKAKMILQVHDELNF 910 >gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501] gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501] Length = 931 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 105/588 (17%), Positives = 188/588 (31%), Gaps = 89/588 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64 D + A+ ++ +F + H + +PQ L K LE+ Sbjct: 357 DTETTSLD--AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLSALKPLLEDP 414 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 T + + ++ VL I + +L + + ALK + Sbjct: 415 AKTKICQHGKYDMNVLMHY---GIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRG 471 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--------- 173 +++ + K T + + A G Y D VT + + Sbjct: 472 TIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRLHQTLLGKLEQT 521 Query: 174 --RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L+ L+ E L + I G VD L + + + +L++E + G Sbjct: 522 PSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAFDIA-GEEF 580 Query: 232 SSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L L+ + G + T +T + VL+ + +V Sbjct: 581 NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKV----------- 629 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +Q S+ P Q PR R H Q +T Sbjct: 630 -------------------IMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATG 670 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R +A+ G KL+ AD + IE R++A +A + L AF Sbjct: 671 RLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAF 730 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + D++ T A F V QV+ DQR K + L Y A +A + Sbjct: 731 QNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAF---GLAKQIDVGRKEA 787 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + A E A E ++ T R + + +S+ + Sbjct: 788 QEYIDRYFARYP------GVLAYMERTRTQAAEQGYVETLFGR-RLYLPEINSKNGAMRK 840 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + G A KR + + +D + ++L LV Sbjct: 841 GAERTAINAPMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELV 888 >gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] Length = 924 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 89/539 (16%), Positives = 164/539 (30%), Gaps = 78/539 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 L+ L++ + + ++ VL+ + + + +L N + Sbjct: 399 DALRPVLQDPAKKKLGQHGKYDLHVLRRH---GVEVQGYHDDTMLESFVLNSTATRHDMD 455 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ + +++ + K P + Y D +T + Sbjct: 456 SLALRYLGYNTIKFEDVAGKGAKQ----------IPFSQVGIDEASRYAAEDADITLRLH 505 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L+P E L + +I G +D +Q + Q+ Sbjct: 506 RALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANGVRIDTVELRRQSQDLSSRMLAAQQK 565 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVF 277 L G + ++L+ LF E L +T + L + Sbjct: 566 ATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP---- 620 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R L++ G ++ P P R H Sbjct: 621 ---------------------------RVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHT 653 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q +SDP+ I +R IA EG +L+ AD + IE R++A + Sbjct: 654 SYHQSGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHL 713 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + + AFE G D++ T A F +VT ++R K + L Y A +A Sbjct: 714 SEDPGLVGAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAF---GLA 770 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ V + +F M++ + + G Sbjct: 771 RNLGIDRGQAQDYV--ALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRL-----YLND 823 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVY 570 H+R L +A G A KR V + +D ++L LV+ Sbjct: 824 IHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVF 882 >gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 105/588 (17%), Positives = 188/588 (31%), Gaps = 89/588 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENT 64 D + A+ ++ +F + H + +PQ L K LE+ Sbjct: 340 DTETTSLD--AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLGALKPLLEDP 397 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 T + + ++ VL I + +L + + ALK + Sbjct: 398 AKTKICQHGKYDMNVLMHY---GIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRG 454 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--------- 173 +++ + K T + + A G Y D VT + + Sbjct: 455 TIRFEDIAGKGAKQLTFDQI----------AIEQAGPYAAEDADVTLRLHQTLLGKLEQT 504 Query: 174 --RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L+ L+ E L + I G VD L + + + +L++E + G Sbjct: 505 PSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAFDIA-GEEF 563 Query: 232 SSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L L+ + G + T +T + VL+ + +V Sbjct: 564 NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKV----------- 612 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +Q S+ P Q PR R H Q +T Sbjct: 613 -------------------IMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATG 653 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R +A+ G KL+ AD + IE R++A +A + L AF Sbjct: 654 RLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAF 713 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + D++ T A F V QV+ DQR K + L Y A +A + Sbjct: 714 QNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAF---GLAKQIDVGRKEA 770 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + A E A E ++ T R + + +S+ + Sbjct: 771 QEYIDRYFARYP------GVLAYMERTRTQAAEQGYVETLFGR-RLYLPEINSKNGAMRK 823 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + G A KR + + +D + ++L LV Sbjct: 824 GAERTAINAPMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELV 871 >gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686] Length = 995 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 469 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 525 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 526 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 568 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 569 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 628 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 629 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 687 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 688 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 716 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 717 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 776 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 777 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 834 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 835 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 873 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 874 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 901 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 902 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 943 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 944 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 985 >gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1] gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1] Length = 994 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984 >gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33] gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33] gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] Length = 994 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984 >gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308] gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19] gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel [Brucella melitensis biovar Abortus 2308] gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19] gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] Length = 978 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLL 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRTHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] Length = 1060 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 122/657 (18%), Positives = 213/657 (32%), Gaps = 138/657 (21%) Query: 35 FGFDDHPVELWDCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 FG P ++ + V + + LK LEN V V N ++ VL +++ Sbjct: 508 FGEGAAPSDVVEPVPGQIPLKEAVARLKPLLENPGVLKVGQNLKYDWVVLARY-GIEVAP 566 Query: 91 HRWICTLVLARSNGL-PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK-P 148 T++++ A + + ++ RNK Sbjct: 567 FD--DTMLISYVLDAGKGGHGMDELARRHLGHQPITFSDVA-----------GTGRNKVT 613 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYC 198 R A Y D VT +++ ++P E L + + RG Sbjct: 614 FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQRGIR 673 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 VD + L+ +L++E++ G S +++ LF + GL T + Sbjct: 674 VDREMLSRLSGDFSQILVRLEEEIQEDA-GEKFSVGSPKQIGDILFGKMGLPGAKKTPSG 732 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 ++ + QA + L++ S+ Sbjct: 733 QWATPATLLEELAQAGHELPKK--------------------------ILEWRQLSKLKS 766 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373 +R H T +S+P+ I +R +A+ G Sbjct: 767 TYTDALQAHADRETARVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAAPG 826 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 +L+ AD + IE R+LA MA KAFE G D++ T + F V ++T D R K Sbjct: 827 NRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMFGVPLKEMTPDLRRRAK 886 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y A +A G+ + +K ++ + R E Sbjct: 887 TINFGIIYGISAF---GLADRLGIGREEASAFIK------QYFEQFPGIRDYIET----- 932 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 KK+ R K V+ L+ + Y + Sbjct: 933 ------------TKKSCRDK-GYVTTLFGRVCH-----------------------YPQI 956 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 NN PS R+ V R +N + G + I +A++R E Sbjct: 957 RSNN-----PSERASV------ERQAINAPIQ---------GSAADIIRRAMTR---MEA 993 Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + A K ++L VHDE+V E + + E ++ +M P+ A L PL E Sbjct: 994 ALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKVPLVVEA 1050 >gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2] gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2] Length = 978 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 818 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 856 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 857 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] Length = 920 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 109/650 (16%), Positives = 195/650 (30%), Gaps = 162/650 (24%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + D PV+ V+ + LK LE+ + + ++ + N + + Sbjct: 378 VAHNYQDAPVQ---LSRQHVL-EKLKPWLEDASKPKLGQHLKYDSHI---FANYGVRLAG 430 Query: 93 WICTLVLARS---NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 +L + P + L+++ +E A C + ++ Sbjct: 431 VKHDTLLESYVFESHRPHDMD------SLAARHLERKTITYAEVCGKGASQIGFN----- 479 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYC 198 A EY D VT + + + P E + Q I G Sbjct: 480 -EVAIERATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVL 538 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT--- 255 +D + + +++Q+ L G + ++L LF + L + T Sbjct: 539 IDSERLGQQSHDLGKRMLEIEQQAYDLA-GQPFNLNSPKQLGEILFGKLELPVVKKTASG 597 Query: 256 -ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 +T + VL + P + + G + Sbjct: 598 APSTDEEVLQKLAEDYPLPKVLL-------------------------------DYRGLA 626 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369 + P P R H Q + ++DP+ I +R + Sbjct: 627 KLKSTYTDKLPKMVNPATGRVHTNYAQAVAVTGRLSSNDPNLQNIPIRTAEGRRIREAFV 686 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A EG +V AD + IE R++A ++ ++ LKAF ED++ T A F +AP QV +QR Sbjct: 687 APEGSVIVSADYSQIELRIMAHISEDENMLKAFANNEDIHRATAAEIFGIAPEQVESEQR 746 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 KV+ L Y A +AS G+ + + + R+M E Sbjct: 747 RYAKVINFGLIYGMSAF---GLASNLGIERAAAQMYID-----KYFMRFSGVKRYMDETR 798 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + + + + R+ Sbjct: 799 LQ-------------------------------------AKARGYVETVFGRR------- 814 Query: 550 YMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 L LP S R G R+ +N Q + D Sbjct: 815 ----------LWLPEINSPNGPRRQGAERAAINAPM------------------QGTAAD 846 Query: 609 ILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651 ++ M+ +++ VHDE+V E P + E L LM Sbjct: 847 LIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEMVREKLPELM 896 >gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1] gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1] Length = 904 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 110/695 (15%), Positives = 195/695 (28%), Gaps = 162/695 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------ 57 ID ET S Y D ++ + + H P P L Sbjct: 328 SIDLETNSLN---------YM-DAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQLDRDRVL 377 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + LE + N ++ +VL I + +L + Sbjct: 378 DALRPLLEAEQPEKMGQNLKYDMSVLARY---GIELRGVAYDSML-------ESYVLDST 427 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + K L E R P G Y D + + + Sbjct: 428 ATRHDMDSLAS-KYLGVEVTSYEQLCGKGVRQVPFAEIDVERAGHYAAEDADIALRLHQL 486 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + G VD L ++ + +++Q Sbjct: 487 LYPRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEELAGRMAEVEQRAH 546 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++++ F GL + T S + Sbjct: 547 EEA-GEAFNLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELSARGHELP----- 600 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R L+ G S+ P R H Q + Sbjct: 601 ---------------------RLILEHRGLSKLKSTYTDKLPQLIHRDTGRVHTSYHQAV 639 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +SDP+ I +R +AS G +L+ AD + +E R++A ++G++ Sbjct: 640 AATGRLSSSDPNLQNIPVRTPEGRRIRKAFVASPGHRLITADYSQVELRIMAHLSGDEGL 699 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AFE GED++ T A F A +V +QR K + L Y A + G+ Sbjct: 700 RRAFEQGEDIHRATAAEVF--AADEVNDEQRRAAKAINFGLIYGMSA---WGLGRQLGIP 754 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + + R + E A Sbjct: 755 RDEAQTYID------RYFERYPGVRAFMDRAREQAR------------------------ 784 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 Q + +T+ +R VP ++ + + R R+ Sbjct: 785 ------EQGYVETV-------FGRRLHVPEIHSRNRQ---------------RREYAERT 816 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEI 632 +N Q + D++ M++ +V+ VHDE+ Sbjct: 817 AINAPM------------------QGTAADVIKRAMIDVDALLNERFPESRLVMQVHDEL 858 Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 V E P+ + LM + +PL+ E Sbjct: 859 VLEVPEAQATAVGDEVRRLMEGSDRGMVSVPLEVE 893 >gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513] gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 994 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984 >gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802] gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802] Length = 972 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 115/637 (18%), Positives = 205/637 (32%), Gaps = 134/637 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 Q LK LE+ V N+ F+R + ++ I + + +LA P L Sbjct: 434 QALKPILESDRYPKVFQNTKFDRLI---FYHQGINLKGVVFDTLLASYVLHPEMSHNLSD 490 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + LS + KEL + K YC D T + Sbjct: 491 LCYRY-LSGITSQSYKELA------------IPKGKTIASLDIETVANYCGLDAYATFLL 537 Query: 172 FKRLE-----------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +L+ L EQ L + + D G +D L+Q ++ + ++Q Sbjct: 538 VSKLKQELKSFPSLEKLLLEVEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDLHIIEQ 597 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + G + + ++L LF + L+ + +T Sbjct: 598 QAYQEA-GEIFNLGSPKQLGEILFEKLELNRKKSRKT----------------------- 633 Query: 281 MRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ + +E + D + L + S+ P P R H Sbjct: 634 ----KTGYSTDHATLEKLQGDHPIIDHILDYRTLSKLKSTYVDALPALVRPDTQRVHTNF 689 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q +T +S+P+ I S +R I E LV AD + IE R+LA ++ Sbjct: 690 NQTVTATGRLSSSNPNLQNIPIRTEFSRKIRQAFIPQENWLLVSADYSQIELRILAHLSQ 749 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E L+A+ +D++ T F+ +T +R +GK + + Y GA Q+ A Sbjct: 750 EVVLLEAYRNNQDVHSVTAKLLFDK--ETITPQERNLGKTINFGVIYGMGA---QRFARE 804 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + N + + ++ M + AI D F+ T R Sbjct: 805 AGVSAAEGKTFI--NKYRQRYAKVFDYLERM----KKEAIADGFVTTILGR--------- 849 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ N + L + + Sbjct: 850 -------------------------------------RRYFNFITESLQKLKGSDPEKIN 872 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHD 630 +N QL R +Q S DI+ M+ ++L VHD Sbjct: 873 LEVLNINYADAQLLRAAANAP------IQGSSADIIKIAMIKMQEILSHYQARLLLQVHD 926 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E P + E + + M + + +PL E Sbjct: 927 ELVFEIPLNEWEELQTKIKETMENAVT--LTVPLVVE 961 >gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445] gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445] Length = 978 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 818 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 856 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 857 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94] gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1] gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94] gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1] Length = 994 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 775 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984 >gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M] gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] Length = 994 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 106/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 468 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 524 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 525 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 567 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 568 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 627 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 628 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 686 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 687 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 715 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE R+ Sbjct: 716 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRI 775 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 776 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 833 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 834 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 872 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 873 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 900 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 901 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 942 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 943 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 984 >gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231] gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231] Length = 898 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 97/589 (16%), Positives = 190/589 (32%), Gaps = 90/589 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP--------QVLKEALENT 64 DL + Y D ++ +F + H V P + L+ LE+ Sbjct: 325 DLETTSLN-YM-DAEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHVLEQLRPLLEDP 382 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + N ++ +VL DI + +L + + ALK + Sbjct: 383 RRAKLGQNLKYDMSVLAHY---DIALRGVRFDTMLESYILDSTATRHDMDSLALKYLGHR 439 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 + +++ + K T + + A EY D + + + L P + Sbjct: 440 TIKFEDVAGKGAKQLTFDQV----------AIERATEYAAEDADIALRLHRVLYPKLRQL 489 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + + G V L + + +++ + G Sbjct: 490 PGPERVFHAIEMPLLPVLSRMERTGVLVSRELLAAQSAELAQRLAEIEASVYR-AAGCEF 548 Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++++ L+ GL + +T + VL P + +R A Sbjct: 549 NLGSPKQIQAVLYDRQGLPVLAKTPKGAPSTAESVLQELAATYPLPRMILEHRALA---- 604 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + P PR R H Q + Sbjct: 605 ---------------------------KLKSTYTDKLPLLIHPRTGRVHTSYRQAVAATG 637 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA +G +L+ D + +E R++A +G++ +AF Sbjct: 638 RLSSSDPNLQNIPVRSPEGRRIRRGFIARQGYRLLAVDYSQVELRIMAHFSGDERLHRAF 697 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ T A F A QVT +QR K + L Y A +A G+ + Sbjct: 698 AAGEDIHRATAAEVFATALEQVTAEQRRAAKAINFGLIYGMSAY---GLARQLGIERDAA 754 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 H V+ E + + F ++ E + G + ++ ++ Sbjct: 755 QHYVE--RYFERYPGVKAFMERIRREARERQYVETVFGRRL-----YLPEINASNAQRRQ 807 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 + G A KR V + +++ ++ ++ ++L LV+ Sbjct: 808 AAERTAINAPMQGSAADIIKRAMVRVDQWLQSEREDVFMVLQVHDELVF 856 >gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] Length = 952 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 96/597 (16%), Positives = 193/597 (32%), Gaps = 97/597 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59 L ID ET + ++ +F ++ + + + Sbjct: 381 LSIDTETTGTEPME----------AELVGMSFSNAENRAYYVPVPANRDEALKIVNEFRP 430 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA- 115 EN + V N ++ VL+ N + + + +LA P + + E Sbjct: 431 LYENENSMKVGQNIKYDMIVLQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ + ++E R+ P Y D VT ++ L Sbjct: 488 LRYRTIHIDE-------LIGSRGKNQKSMRDLPPED-----VYRYACEDADVTLKLKNVL 535 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E K E L + I G +D ++ + ++++E+ +L Sbjct: 536 EKELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYAL 595 Query: 226 TYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 G + +++ LF + + T+T T + VL S + ++ Sbjct: 596 ANGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILE-- 653 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + G + P PR R H + Sbjct: 654 -----------------------------YRGLKKLLSTYIDALPQLINPRTGRIHTSFN 684 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +S+P+ I +R I +G + AD + IE R++A ++ + Sbjct: 685 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQD 744 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF +G D++ T A+ + V ++VT D R K + Y +A Sbjct: 745 RNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVF---GLAERM 801 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ L+ + + + + + A E+ ++ T R K+ +S Sbjct: 802 NVSRQEAKELIDG------YFETYPQIKEYMDKSIQVARENGYVETIFHR-KRFLPDINS 854 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570 R + + + G A K + L+Y + NNL ++L L + Sbjct: 855 RNAVVRGYAERNAINAPIQGSAADIIK-VAMSLIYQRIQSNNLKAKMILQVHDELNF 910 >gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654] gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654] Length = 932 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 99/637 (15%), Positives = 181/637 (28%), Gaps = 150/637 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ + + N+ ++ + L++ + A +GL + Sbjct: 410 LKPVLEDPAILKIFQNAKYDTKIFSRH-GLNVAPIDDTMLMSYAMFSGL-HNHGMDTLSE 467 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K L+ T + + +Y D VT +++ + Sbjct: 468 HYLGHTPISIKTLLGTGKSAITFDKV----------KIEDAVKYAAEDADVTLRLWQLFK 517 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P +E + L + + G VD ++ + L+ E+ L Sbjct: 518 PRLHREKVTTVYETLERPLVPVLAQMEMHGVQVDRDTLSRMSNAFAQKMAGLEAEIHELA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + GL +T T VL +V + R Sbjct: 578 -GQSFNVGSPKQLGEILFDKLGLEGGKKGKTGAYATGADVLEDLAAQHDLPARVLDWRQL 636 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ P R H Q Sbjct: 637 -------------------------------SKLKSTYTDALQTHIDPDTGRVHTSYLQT 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 ++DP+ I +R +A EGK LV D + IE R+LA +AG + Sbjct: 666 GASTGRLASTDPNLQNIPIRTEEGRRIREAFVAPEGKVLVSLDYSQIELRILAHVAGIES 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF GED++ T + F+V ++T D R K + + Y + Sbjct: 726 MKQAFRDGEDIHAATASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIAR- 784 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 +A+ F E +P Sbjct: 785 ------------------GEAQGFIDRYFEKYP--------------------------- 799 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + E+G R+ + P + R Sbjct: 800 -GIKEYMDDTVAFAKEHGHVATLFGRK---------------IHTPEINAKGPHAGFARR 843 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----DIVLTVHDEIV 633 + +N +Q + DI+ M+ A ++L VHDE++ Sbjct: 844 AAINAP------------------IQGSAADIIRRAMIRMPDAISGLPVKMLLQVHDELI 885 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 E + + S++ +M A +PL + Sbjct: 886 FEVEEGGVDKAVSVIRDVMEGAADPAVKLDIPLVVDA 922 >gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] Length = 914 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 116/701 (16%), Positives = 212/701 (30%), Gaps = 176/701 (25%) Query: 5 FIDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP 54 ID ET S + L + G+ Y I A + D PV+L ++ Sbjct: 340 SIDTETTSLVPLQAQLVGISLCCEPGVAAY------IPVAHRYADAPVQL----SRELVL 389 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 ++ LE+ V N ++ + N I + T++ + + Sbjct: 390 GKMQAWLEDPAKAKVGQNLKYDSHI---FANHGITLRGIAHDTMLESYVFESHRSHDMDS 446 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ + +E+ C + +D + EY D +T ++ + Sbjct: 447 LALRHLGRTTITFQEV----CGKGASQICFD------QVDIARATEYAAEDADITLQLHQ 496 Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P + ++ L ++ Q I G +D + + + +++ Sbjct: 497 AMLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTGILQVQSHELGKRMLEIETSA 556 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFN 278 L G + +++ F + L + +T + VL+ + P + Sbjct: 557 YELA-GQPFNLNSPKQIGEIFFEKLQLPVVKKTPSGAPSTDEEVLAKLAEDYPLPKVLLE 615 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P P R H Sbjct: 616 YRSL-------------------------------SKLKSTYTDKLPKMIDPTTGRVHTN 644 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + +++P+ I +R +A G +V AD + IE R++A ++ Sbjct: 645 YAQTVAVTGRLASNEPNLQNIPIRTAEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLS 704 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ L+AF G D++ T A F+ A VT +QR KV+ L Y A +A Sbjct: 705 GDANMLRAFADGIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMSAF---GLAG 761 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + + + ++M E + + Sbjct: 762 NLGIERGAAQSYID-----KYFARFSGVKQFMDETRLKA-------------------KA 797 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572 H V ++ L LP S R Sbjct: 798 HGYVETVFGR-----------------------------------RLWLPEINSPNGPRR 822 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--IVL 626 G R+ +N Q + D++ M+ G +V+ Sbjct: 823 QGAERAAINAPM------------------QGTAADLIKLSMVAVQGWLETDGLKSLMVM 864 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P + E L LM +PL AE Sbjct: 865 QVHDELVLEVPQEELELVRVKLPALMAGVAE--LKVPLTAE 903 >gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330] gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365] gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40] gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330] gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365] gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40] Length = 979 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 453 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 509 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 510 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 552 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 553 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 612 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 613 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 671 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 672 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 700 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 701 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 760 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 761 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 818 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 819 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 853 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 854 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 885 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 886 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 927 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 928 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 969 >gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 937 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 196/641 (30%), Gaps = 160/641 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVG 113 LK LE+ + N ++ V N I + ++ +L P +L+++ Sbjct: 415 LKSWLEDGSRAKLGQNVKYDTHV---FANHGIAVRGYVHDTLLQSYVLEAHKPHSLESLA 471 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + E + P + EY D +T ++ + Sbjct: 472 SRH------------LDRKGLSYEDVAGKGAQQIPFAQVELTRATEYSGEDSDMTLDVHR 519 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E + I G +D AL + + L+QE Sbjct: 520 VLWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSALLARQSADLAQRMVALEQEA 579 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278 +L G + +++ LF + G+ + T +T + VL+ P ++ Sbjct: 580 HALA-GQPFNLGSPKQIGEILFNKLGIPAKKKTASGAPSTDEEVLAELAADYPLPAKLLE 638 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R A + P R H Sbjct: 639 HRSLA-------------------------------KLKGTYTDKLPLMVNAATGRVHTN 667 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + ++DP+ I VR IA G ++ AD + IE R++A ++ Sbjct: 668 YAQAVAVTGRLASNDPNLQNIPIRTPEGRRVREAFIAPPGHVILSADYSQIELRIMAHIS 727 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + LKAF G D++ T + FNV A+V+ +QR KV+ L Y GA +AS Sbjct: 728 EDPGLLKAFAEGLDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMGAF---GLAS 784 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + A VK+ + Sbjct: 785 NLGIEQKAAKDYIDRYFAR------------------------------FAGVKRYMDET 814 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572 +R EL + + R+ + LP R Sbjct: 815 RARAKEL------------GYVETLFGRR-----------------IYLPEINGGNGPRR 845 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVL 626 G R +N Q + D++ M+ A +V+ Sbjct: 846 TGAERQAINAPM------------------QGTAADLIKLAMIAVQAALDAQQRATCMVM 887 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P+ + ++ + + LM +PL AE Sbjct: 888 QVHDELVFEVPEAELDWARTAVPELMAGVAE--LKVPLLAE 926 >gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] Length = 953 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 104/599 (17%), Positives = 205/599 (34%), Gaps = 85/599 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVA 70 D G+ ++ AF ++ D Q + EAL E ++ + Sbjct: 385 DTETTGLNP--LTAELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRCFFEAENIQKIG 442 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VL ++ + + +LA P A + EL Sbjct: 443 QNLKYDIKVLAKY---NVEVKGPLFDTMLAHYLINPDMRHNMDVLAETYLNYTPVSITEL 499 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I + K L R+ P EY D +T ++ + E Sbjct: 500 IGKKGK----NQLSMRDVP-----LDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFD 550 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +D +L+ ++ + L ++ + G + ++L Sbjct: 551 DIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVA-GEEFNIASPKQL 609 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T+T T + +LS K Sbjct: 610 GIILFEKLKLVDKPKKTKTGQYKTGEDILSVLAKDHEI---------------------- 647 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +R L++ G ++ P Q R H + Q + +++P Sbjct: 648 ---------IRNILEYRGLAKLKSTYVDALPLQVEESTGRVHTDYMQTVAATGRLSSNNP 698 Query: 355 DPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR I + L+ AD + IE R++A ++ E+ ++AF+ GED+ Sbjct: 699 NLQNIPIRTERGRQVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIEAFKNGEDI 758 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T ++ F V +VT+ QR+ K + + Y A +++ T L+ L+ T Sbjct: 759 HASTASKVFGVPIEEVTRAQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGEAKELIDT 815 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 +E ++M E A ++ ++ T +R ++ + +SR + + + Sbjct: 816 -----YYETYPKLKKYMSEQV-HFARDNGYVKTILDR-RRYLKDINSRNAVVRGAAERNA 868 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLNTTTR 585 G A K + +Y K + N ++L LV+ + T + Sbjct: 869 VNAPIQGSAADIIKIAMI-NIYNKLEAGNYKTKMLLQVHDELVFDVYKPELEKMTTLIK 926 >gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] Length = 920 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 101/594 (17%), Positives = 187/594 (31%), Gaps = 92/594 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59 L +D ET S + D ++ +F ++ + + + K Sbjct: 350 LSLDTETTSTNPI----------DAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIFKP 399 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKL 118 EN D+ V N ++ VL N + + + +LA P A L Sbjct: 400 IYENPDILKVGQNLKYDLEVLH---NYGVTLKGKMFDTMLAHYVIQPELRHNMDYMAETL 456 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEP 177 + + ELI +N+ + RE + EY D +T ++ LE Sbjct: 457 LNYRTIHIDELI----------GPRGKNQKSMRELDPKEVYEYAAEDADITLQLKNVLET 506 Query: 178 LSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + E L + I G +D + I+ + E+ L Sbjct: 507 KLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEIYQLA- 565 Query: 228 GLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + +++ LF + + T+T T + VL + +P ++ R Sbjct: 566 GEEFNISSPKQVGDILFGKMKIVEKPKKTKTGQFVTSEEVLQQLENKSPIVAKILEYR-- 623 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G + P PR H +Q Sbjct: 624 -----------------------------GLKKLLGTYVDALPKLINPRTGHIHTSFNQA 654 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 IT +SDP+ I +R C I G AD + IE RV+A ++ ++ Sbjct: 655 ITATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKN 714 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF G D++ T A+ + +VT+D+R K + Y +A + Sbjct: 715 MIEAFMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIYGITTY---GLAQRLDI 771 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + L+ E + + E A + T R ++ +S Sbjct: 772 DNREAKELI------EGYFETFPQVYEYMERAKADARAKGYAETLFHR-RRYLPDINSHN 824 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570 + + + G A K + + K++ + L+L L + Sbjct: 825 ATVRGYAERNAINAPIQGSAADIIKVAMIRISDRFKRENIHSKLILQVHDELNF 878 >gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T] gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T] Length = 939 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 117/685 (17%), Positives = 193/685 (28%), Gaps = 178/685 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVMP-----QVLKEA 60 D + A ++ +F + H +P L+ Sbjct: 363 DTETTSLDPMA--ARLVGMSFAVEPGEAAYLPLAHRGAAQLPEAPEQLPLDEVLDRLRPW 420 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 E+ + N ++ VL + + A + E+ L S Sbjct: 421 FESDRHAKLGQNLKYDAHVLANH-GIAL----------------RGIAHDTLLESYVLES 463 Query: 121 QKMEEGKELIARF-----CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K + L R + EY D VT + + L Sbjct: 464 DKAHDMDSLAKRHLGLATIPYTEVCGKGAKQIGFDEVDVARATEYAAEDADVTLRLHQHL 523 Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P E + + Q + G +D L ++ + L+ E + Sbjct: 524 CPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLGQHSEELGRRLYTLEGEAHA 583 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L LF + GL + T T T + VL + P + +R Sbjct: 584 LA-GQPFNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLEKLAEDYPLPKLLLEHR 642 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P PR R H Sbjct: 643 -------------------------------GLSKLKSTYADKLPRMVNPRTGRVHTSFS 671 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +S+P+ I +R+ IA +V AD + IE R++A ++ + Sbjct: 672 QATAVTGRLSSSEPNLQNIPIRTPEGRRIRAAFIAPRDHLIVSADYSQIELRIMAHLSDD 731 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF GED++ T F VAPA+VT +QR KV+ L Y A +A Sbjct: 732 ARLLEAFARGEDVHRATAGEVFGVAPAEVTSEQRRYAKVINFGLIYGMSA---HGLAKNL 788 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + +M E Sbjct: 789 GIERAAAQAWID-----RYFARYPGVAEYMDRTRAEAR---------------------- 821 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVG 574 Q + +T+ + L LP R+ R G Sbjct: 822 ---------EQGYVETVFGRR-----------------------LYLPDIRASQAGRRAG 849 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 R+ +N Q + D++ + M+ +VL V Sbjct: 850 AERAAINAPM------------------QGTAADLIKKAMIATDAWLASCGLKSKLVLQV 891 Query: 629 HDEIVCETPDTD-EFNASMLYHLMT 652 HDE+V E P + E L LM Sbjct: 892 HDELVLEVPGAELETVREELPRLMG 916 >gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] Length = 903 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 99/575 (17%), Positives = 186/575 (32%), Gaps = 88/575 (15%) Query: 18 KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77 K G Y + A + D P + D + + LK LE+ + H+ ++R Sbjct: 351 KTGEAAY------LPLAHDYADAPQQ---LDRDETL-KRLKPLLESARHKKLGHHLKYDR 400 Query: 78 TVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 VL N I ++ +L N S A K + +E+ + K Sbjct: 401 NVL---LNHGIELNGIEHDTMLESYVLNSTASRHDMDSLAQKYLDYRTTHYEEVAGKGAK 457 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQE 184 + Y D +T + + L P E Sbjct: 458 QIPFSQVRI----------EDATPYAAEDADITLRLHEHLWPQLSAAEGQCRVYREIEMP 507 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G VD + + ++++E + G + ++++ L+ Sbjct: 508 LVPVLSRMERTGVKVDAERLFAQSHELAERMGQIEREAHEVAGG-AFNLGSPKQIQEILY 566 Query: 245 LETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 L + +T + VL P + +R Sbjct: 567 ERQKLPVLRKTPKGQPSTAEDVLEQLALDYPLPKLILEHRSL------------------ 608 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 S+ P + P R H Q + +SDP+ I Sbjct: 609 -------------SKLKSTYTDKLPERIDPDTGRVHTSYHQAVASTGRLSSSDPNLQNIP 655 Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R +A G++LV AD + IE R++A ++G+ L+AF G+D++ T A Sbjct: 656 IRTEEGRRIRQAFVAPSGRRLVAADYSQIELRIMAHLSGDAGLLRAFAEGQDIHRATAAE 715 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V QV+ +QR K + L Y A +A G+ V A Sbjct: 716 VFGVGLDQVSGEQRRAAKAINFGLIYGMSAF---GLARQLGIERGDAQDYVDRYFARYP- 771 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + E+ E A + ++ T R + ++R ++ + + G Sbjct: 772 -----GVKDYMESTREKARDLGYVETLFGR-RLYLPDINARNGQIRAQAERVAINAPMQG 825 Query: 536 KAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLV 569 A KR + + ++++ + +++L LV Sbjct: 826 TAADIIKRAMIQVDQWIRESRIPAVMILQVHDELV 860 >gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] Length = 978 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--------PSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMAPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLL 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRTHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] Length = 952 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 99/589 (16%), Positives = 186/589 (31%), Gaps = 91/589 (15%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDP--VMPQVLKEALENTDV 66 ID G E + L F D + D + + EN + Sbjct: 382 SIDTETTGT----EPMEAELVGMSFSDAENQAYYVPVPANRDEALKIVNEFRPLYENENS 437 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKM 123 V N ++ VL+ N + + + +LA P + + E + Sbjct: 438 MKVGQNIKYDMIVLQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIYLH--YQT 492 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179 ELI K + + R+ P Y D VT ++ LE Sbjct: 493 IHIDELIGAKGKNQKN----MRDLPPED-----VYRYACEDADVTLKLKNVLEKELKEHA 543 Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L + I G +D ++ + ++++E+ +L G + Sbjct: 544 AEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALAGGETFNI 603 Query: 234 RCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 +++ LF + T+T T + VL S + ++ Sbjct: 604 GSPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILE---------- 653 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + G + P PR R H +Q +T Sbjct: 654 ---------------------YRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAVTATGR 692 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +S+P+ I +R I +G + AD + IE R++A ++ ++ + AF Sbjct: 693 LSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMIDAFL 752 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +G D++ T A+ + V VT D R K + Y +A + Sbjct: 753 SGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVF---GLAERMNVPRQEAK 809 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L+ + + + + + A E+ ++ T R K+ +SR + + Sbjct: 810 ELIDG------YFETYPQVKEYMDRSIQVARENGYVETIFHR-KRFLPDINSRNAVVRGY 862 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570 + G A K + L+Y + NNL ++L L + Sbjct: 863 AERNAINAPIQGSAADIIK-VAMSLIYQRLQSNNLKAKMILQVHDELNF 910 >gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1] gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1] Length = 978 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33] gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915] gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99] gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99] gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915] gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99] Length = 978 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840] gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840] Length = 978 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 109/639 (17%), Positives = 200/639 (31%), Gaps = 150/639 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFN-----LDIPIHRWICTLVLARSNGLPSALKA 111 LK LE+ + +A N ++ V++ D + ++ R P + + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRHGINAVSFDDTMLISYVLDAGTGRHGMDPLSERW 511 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 +G GK + Y D VT + Sbjct: 512 LGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVTLRL 554 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ L+P + E + L + + +RG VD + L+ + + E Sbjct: 555 WQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDE 614 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQV 276 + +L G + ++L LF + GL T+T T +VL P ++ Sbjct: 615 IYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLPRKI 673 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R ++ P P+ R H Sbjct: 674 VDWRQL-------------------------------TKLKSTYTDALPGFINPQTKRVH 702 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 T +SDP+ I +R+ IA G KL+ AD + IE RVLA Sbjct: 703 TSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAH 762 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A +AF G D++ T + F V + + R K + + Y A + Sbjct: 763 VADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF---GL 819 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A+ + ++T +E +M+ KA+ Sbjct: 820 ANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------KAFA 855 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++H V ++ +R P + P R+ Sbjct: 856 REHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF--- 884 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 N R+ +N + G + I +A+ R E + ++L VHDE Sbjct: 885 ---NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQVHDE 929 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++ E P+ + E ++ +M + A L PL+ + Sbjct: 930 LIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46] gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46] Length = 1016 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 105/655 (16%), Positives = 189/655 (28%), Gaps = 151/655 (23%) Query: 46 DCVHDPVMPQVL---------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 D + ++P L K LE+ V V N ++ VL I I + T Sbjct: 470 DLFGEGLLPDQLPWDAVRARLKPLLEDPAVLKVGQNVKYDWLVLVRH---GIEIQPYDDT 526 Query: 97 LVLARSNGL-PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 ++++ + A + + ++ R Sbjct: 527 MLISYVLDAGKGSHGMDELARRHLGHQPITFADV----------TGTGRAKVTFDRVPLD 576 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205 Y D VT +++ ++P + E L + + G VD + Sbjct: 577 KATAYAAEDADVTLRLWRLMKPRLAAEHRATVYETLERPLVPVLARMEREGIRVDRDMLS 636 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261 L+ +L+ E++ + G S +++ LF + GL T + T Sbjct: 637 RLSGDFSQSLARLEAEIQEMA-GETFSVSSPKQIGDILFGKLGLPGAKKTPSGQWATPAT 695 Query: 262 VLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 +L P ++ R S+ Sbjct: 696 LLEELATQGHPLPRKILEWRQL-------------------------------SKLKSTY 724 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375 R H T +SDP+ I +R +A G + Sbjct: 725 TDSLQEHAERESDRVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADAGHQ 784 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R+LA MA +AF G D++ T + F V ++T D R K + Sbjct: 785 LISADYSQIELRLLAHMADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTI 844 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y A +A G+ + Sbjct: 845 NFGIIYGISAF---GLADRLGIPQGEASAF------------------------------ 871 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 K + ++ + + +A +DK Sbjct: 872 -----------IKQYFERFPGIRAYIEDTKKA------------------------CRDK 896 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 + + GR Y + +N + + G + I +A+ R EG + Sbjct: 897 GYVTTLF--GRVCHYPQIRSNNPQERASVERQAINAPIQGTAADIIRRAMVR---MEGAL 951 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667 ++L VHDE+V E P + A ++ +M P A +PL E Sbjct: 952 AGAGLTTRMLLQVHDELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEA 1006 >gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6] gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6] Length = 951 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 114/620 (18%), Positives = 206/620 (33%), Gaps = 140/620 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEA 115 L + + AHN+ F+ +L + I + T++ A G + LK + Sbjct: 415 LGPFFADPNKAKYAHNAKFDIEML---LGVGIEVQGLAFDTMIAAALLGKRAGLKDLAFY 471 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 M ++LI R K + + Y D +T + L Sbjct: 472 ELQLPDPMTPIEDLIGRGTKQIS----------FAQVPIERATPYAAADADMTLRLVHAL 521 Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 EP + E L ++ + G +D L Q + ++QE+ Sbjct: 522 EPQLATTPKLHDLYRRLELPLVHVLVQMEQAGIALDKPYIEYLGQRMGTRIAAIEQEIYQ 581 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + G + ++L LF + GL E + T + S +T ++ R Sbjct: 582 IAEG-PFNINSSDQLSDILFGKIGLSTEGVERTAKTKKYS----ITADTLERLRER---- 632 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 ++ G L++ S+ P PR R H +Q+ Sbjct: 633 --------------DTSGICERILEYRRLSKLKSTYVDALPALVNPRTGRVHTTYNQVGA 678 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R +A+ G + + AD + IE RVLA++ + + Sbjct: 679 ATGRLSSNDPNLQNIPVRTQEGREIRRGFVAAPGHRFIAADYSQIELRVLAYITKDPNLV 738 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF+ G+D++ T A+ F VA QV K+QR I K + + Y G AF +A T Sbjct: 739 RAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIY--GISAF-GLAQRT---- 791 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 M + + I LF R Sbjct: 792 ------------------------EMGRSEAQDLINSLFT----------------RFPG 811 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +++ EQ + V + + P +S R R Sbjct: 812 IRDYINRTLEQ----------GQTTGVVQTIFGRQRAM-----PELQSRGPRRAAAEREA 856 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIV 633 +N +Q + DI+ M+ +A ++L VHDE++ Sbjct: 857 INAP------------------IQGTAADIMKIAMIKMARALSERGLRTRLLLQVHDELI 898 Query: 634 CETPDTD-EFNASMLYHLMT 652 E P+ + A ++ +M Sbjct: 899 LEAPEEEVALVAELVREVMA 918 >gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 978 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] Length = 978 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 108/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE R+ Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRI 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1] gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94] Length = 978 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20] gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20] gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] Length = 930 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 87/550 (15%), Positives = 177/550 (32%), Gaps = 74/550 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K LEN ++ + N F+ ++ + T++L+ + A Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVE--FDTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIF 172 + + + L + T + EY D VT ++ Sbjct: 467 RYLGHETIAFESLAGKGKSQLTFNQI----------PLEQATEYAAEDADVTMKLQQALW 516 Query: 173 KRLEPLSS-------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +L+ + E L ++ + G +D + + T L+++ +L Sbjct: 517 LKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYAL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + L + +T + VL + +R Sbjct: 577 A-GQPFNLASTKQLQEILFDKLELPVLQKTPKGAPSTNEEVLEELSYSHELPKILVKHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P + R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPQMVNSQTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +V AD + IE R++A ++G+Q Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRHIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQ 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F V+ +VT +QR K + L Y A ++ G Sbjct: 725 GLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLG 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + F ++E + G +S Sbjct: 782 ISRADAQKYMD--LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRL-----YLPDINSS 834 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A KR + L + + ++ +++ LV+ Sbjct: 835 NAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVIRHDPDIEMIMQVHDELVFEVRSEK 894 Query: 577 RSYLNTTTRQ 586 ++ +Q Sbjct: 895 VAFFREQIKQ 904 >gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath] gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath] Length = 906 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 110/593 (18%), Positives = 192/593 (32%), Gaps = 90/593 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMP--------QV 56 D ET S +D + VI +F + HD P + Sbjct: 333 DTET-SSLDYMRA---------EVIGLSFAVEPGAAAYVPLAHDYPGAPPQLDRAMVLER 382 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 L+ LE+ + + ++ VL N I + +L N + Sbjct: 383 LRPLLEDPGKAKLGQHLKYDANVL---LNHGIMLRGIRHDTMLESYVLNSTATRHDMDSL 439 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----RE 170 A + +K +++ + K P R + Y D VT R Sbjct: 440 AERYLDRKTLHYEDVAGKGAKQ----------IPFARVSVEDACRYAAEDADVTLCLHRA 489 Query: 171 IFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 ++ RLE + + E L + I G VDV ++ ++ +++ E Sbjct: 490 LWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSRELERRMAEVEAEAR 549 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 ++ G + ++++T L+ + GL + T T S + + ++ Sbjct: 550 AVA-GETFNLGSPKQIQTILYDKLGLPVIKKTPTGQPSTDESVLQDLAETFELP------ 602 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R L++ S+ P Q P R H Q + Sbjct: 603 ---------------------RLILEYRSLSKLKSTYTDKLPHQVNPVSGRVHTSYHQAV 641 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +SDP+ I +R +A G KL+ AD + IE R++A ++G+ Sbjct: 642 AATGRLSSSDPNLQNIPVRTEEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLSGDANL 701 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF D++ T A F VA +VT QR K + L Y A +A G+ Sbjct: 702 LAAFAEDADVHRATAAEVFGVALEEVTSSQRRSAKAINFGLIYGMSAF---GLAKQLGIQ 758 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + A R + E A E ++ T R SR Sbjct: 759 QKLAQGYIDLYFARYP------GVRAYMDRTRESARELGYVETLFGRRLHV-PDIQSRNG 811 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 + + G A KR + L +++ L +++ LV+ Sbjct: 812 QRRQYAERTAINAPMQGTAADIIKRAMIALDAWIESSGAPLRMIMQVHDELVF 864 >gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501] gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501] Length = 970 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 110/643 (17%), Positives = 208/643 (32%), Gaps = 134/643 (20%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106 + L+ LE+ + V N+ F+R + K I + + +LA P Sbjct: 426 RKEQVFDRLQSILESNNYPKVFQNTKFDRLIFKHQ---GINLDGVVLDTMLASYVLHPEK 482 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L + E L + K+L + + EYC D Sbjct: 483 SHKLSELCEQY-LEGITSLDYKDL------------GIGKKQTIADLDIETVAEYCGMDA 529 Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 T + + L+ L EQ L + + D G +D L++ ++ Sbjct: 530 YATFLLVEPLKNELKPLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQH 589 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 L++ G + ++L LF + L+ + +T Sbjct: 590 LLSLEENAYQ-AAGEKFNLGSPKQLGHILFEKLELNRKKSRKT----------------- 631 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + +E + D + L++ S+ P Sbjct: 632 ----------KTGYSTDHATLEKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDKIDQ 681 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q +T +S+P+ I S +R I + LV AD + IE R+ Sbjct: 682 RIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQQDWLLVSADYSQIELRI 741 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ EQ L A++ +D++ T F+ ++T +R +GK + + Y G++ F Sbjct: 742 LAHLSQEQVLLNAYKNADDVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQRF 799 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + A + + F N + + ++ M++ + Sbjct: 800 AREAGVSAVEGKEF-----INKYRQRYAKVFDYLESMKKEAIANG--------------- 839 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 I+ R+R Y +NL R Sbjct: 840 -------------------------YVTTILGRRR------YFNFFDDNLYRF----RGH 864 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI 624 +++ N+ +N QL R +Q S DI+ M+ ++ Sbjct: 865 DPQNIDLNKININYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANL 918 Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +L VHDE+V E P + E + M + + +PL E Sbjct: 919 LLQVHDELVFEIPHQEWEELEDKIKETMENAVT--LTVPLVVE 959 >gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28] gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90] Length = 978 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTDSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] Length = 954 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 95/600 (15%), Positives = 193/600 (32%), Gaps = 94/600 (15%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTI 68 +D G ++ +F F ++ + + + LK +EN Sbjct: 385 SLDTETTGTDPI--TAELVGMSFSFAENQAFYVPVPANREEALAIVKKLKPIIENEKTLK 442 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124 + N ++ VL N + + + ++A P + + E LK + K+E Sbjct: 443 IGQNIKYDMLVLG---NYGVEVRGPMFDTMIAHYVLQPELHHGMDYLAEVYLKYETIKIE 499 Query: 125 EGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRLEP------ 177 E + R+ P +Y D VT ++ K LE Sbjct: 500 E-------LIGPKGKNQKNMRDLSPT------SVYKYACEDADVTLKLKKVLEKELIENN 546 Query: 178 ----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E L + + G +D +Q +L++E+ L G+ + Sbjct: 547 VNELFQTIEMPLVPVLAYMERNGVRIDTEALKETSQHFTARMKQLEEEVHQLA-GMEFNI 605 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTC-------QRVLSSNKKLTPQAIQVFNNRMRASRS 286 +++ LF L + D + T + VL S + ++ +R Sbjct: 606 ASPKQVGEVLFDR--LKITDKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------ 657 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 G + P P+ H +Q +T Sbjct: 658 -------------------------GLKKLLGTYIDALPLLINPKTGHIHTSFNQTVTAT 692 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +S+P+ I +R I EG + AD + IE R++A ++G+ ++A Sbjct: 693 GRLSSSNPNLQNIPIRNEDGKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEA 752 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ G+D++ T A+ + VT++QR+ K + Y +A + Sbjct: 753 FQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVF---GLAERLNIERKE 809 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 L+ + + + + A E +I T +R K+ +SR + + Sbjct: 810 AKELIDG------YFENYPHVKEYMDQSIRLAQEKGYIETIFKR-KRYLPDINSRNAVVR 862 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580 + G A K + + ++ ++L L + V + + Sbjct: 863 GYAERNAINAPIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDELNFSVVPEEKEKV 922 >gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP] gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP] Length = 962 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 96/634 (15%), Positives = 197/634 (31%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN ++ V N ++ TV N I + +L + + Sbjct: 439 QLKPLLENVEIKKVGQNIKYDLTV---FANHGIELQGVAFDTMLESYTLNSTGRHNMDEL 495 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +++ + T + + A EY D +T ++ ++ Sbjct: 496 AERYLDHKTIAFEDIAGKGKNQLTFDKI----------AIETATEYAAEDADITMKLHQQ 545 Query: 175 L-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L + + E L + + G +D ++ ++ +++ + Sbjct: 546 LITSLAKTPSLIKLFNEIEMPLVNVLARVEQNGVLIDSDKLLAQSKEMEQRLAEVEIAVH 605 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G + ++L+ LF + L + T + Q + + Sbjct: 606 T-AAGQAFNLASTKQLQEILFEKLALPVLKKTPKGAPSTNEEVLEQLAQQGHLVPKLLSE 664 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R S+ P R H Q + Sbjct: 665 HR--------------------------ALSKLKSTYTDKLPKMINQHTGRVHTSYHQAV 698 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA +G K+V AD + IE R++A +A ++ Sbjct: 699 TTTGRLSSSDPNLQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGM 758 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F ++ A+VT +QR K + L Y +A+ ++ Sbjct: 759 ITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLIYGMSDF---GLANQLAIS 815 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + Q++ V Sbjct: 816 RDEAKEYM-----------------------------------------ARYFQRYPNVQ 834 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ ++ +++ + +R +P + R R Sbjct: 835 QFMRDIRESA--SVKGYVETLFGRRLYLPEIKSNN---------------AIRRKAAERL 877 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 +N Q + DI+ M++ K +++ VHDE++ Sbjct: 878 AINAPM------------------QGTAADIIKIAMISIDKQIRADQNIKMIMQVHDELI 919 Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E+ ++ M A +PL AE Sbjct: 920 FEVKQECIEYYTGLIKTEMEKAI--AMKVPLIAE 951 >gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 930 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 89/544 (16%), Positives = 180/544 (33%), Gaps = 72/544 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70 D G+ D ++ +F + + + K LE+ + + Sbjct: 362 DTETTGLDALVAD--IVGLSFAIEKGKAYYVPTPDSREQALEIINIFKPILEDPAIQKIG 419 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKEL 129 N ++ +L D+ + + +LA P A +L Sbjct: 420 QNIKYDILLLSRY---DVKVKGALFDTMLAHYLIDPDTRHGMDVLAENYLGYIPVSITKL 476 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181 I KG+ + D L EY D +T ++ ++ EPL + Sbjct: 477 IGE--KGKKQGNMRD-------VEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQ 527 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L Y+ I G +DV + ++ ++ + L+ + G+ + ++L Sbjct: 528 EVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEKA-GVKFNIASPKQL 586 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + +L P+A + + + +L L + + Sbjct: 587 GEVLFDKL--------------------QLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQ 626 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L F + P P H +Q + +++P+ I Sbjct: 627 D------ILDFRQLQKLKSTYVDALPSLINPNTGLIHTSYNQAVAATGRLSSTNPNLQNI 680 Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 VR I SE ++ AD + IE R++A ++ + L+AF+ G D++ T Sbjct: 681 PIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATA 740 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A+ + + +V+ DQR K + + Y A + + G+ A ++ Sbjct: 741 AKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQ---SLGIPRREAADIID------ 791 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 ++ + R A E+ F+ T +R ++ R +S + + Sbjct: 792 QYFQQYSGIRDYMSKAIASAKENGFVETILKR-RRYLRDINSANMTVRGFAERNAINAPI 850 Query: 534 NGKA 537 G A Sbjct: 851 QGSA 854 >gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8] gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8] Length = 908 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 99/563 (17%), Positives = 186/563 (33%), Gaps = 87/563 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D + +Y D ++ +F + HD + + LK LE+ Sbjct: 334 DTETTSL-RYM-DAEIVGVSFAVEPGKAAYVPLGHDYMGAPEQLDRDSVLEQLKPLLEDP 391 Query: 65 DVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 V N +++ VL L+ + + S G + ++ L + + Sbjct: 392 KHKKVGQNLKYDKNVLANHDIQLEGIAEDTMVESYVLNSVGTRHDMDSLARTY-LDEETI 450 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179 + + + K T + G Y D +T + + L P Sbjct: 451 TY-ESIAGKGAKQLTFNQI----------DLESAGPYAAEDADITLRLHQTLAPRLKDTG 499 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + L + + RG + + +Q + +L++E + G + Sbjct: 500 KLESVYREIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEKEAHEVA-GEAFN 558 Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L+ L+ + GL + T T + VL + +R Sbjct: 559 LGSTKQLQAILYDKLGLRVIKKTPKGAPSTAEPVLQELAHEHELPRLIVEHRSL------ 612 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 S+ P R R H Q +T Sbjct: 613 -------------------------SKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGR 647 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +S+P+ I +R IA +G KL+ AD + IE R++A ++G++ L AFE Sbjct: 648 LSSSEPNLQNIPIRTQEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHLSGDRGLLTAFE 707 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ T A F V +VT DQR K + L Y A ++ ++ T Sbjct: 708 HGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIYGMSAF---GLSRQLEVDRKTAQ 764 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + +E ++M +N + A +D ++ T R + + ++R +L Sbjct: 765 EYID-----RYFERYPGVLKYM-DNIRKQAHDDGYVETLYGR-RLYLPEINARNKQLQQA 817 Query: 524 LHQAFEQTIENGKAIIARKRRDV 546 + G A KR + Sbjct: 818 AERTAINAPMQGTAADIIKRAMI 840 >gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568] Length = 937 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 108/578 (18%), Positives = 187/578 (32%), Gaps = 102/578 (17%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 352 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 458 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 459 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIEQATEYAAQDADFA 505 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 506 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 565 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 566 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 624 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 625 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 653 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 654 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 713 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 714 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY-- 771 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + A + E A F+ T R + Sbjct: 772 -GLAKSLGIDNISAKNFIDRYFARYP------GVAEYMQRTKEQAAAQGFVETLFGR-RL 823 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 H++ + +A G A KR + Sbjct: 824 YLPDIHNKNANARAGAERAAINAPMQGTASDLIKRAMI 861 >gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9] gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9] Length = 908 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 123/698 (17%), Positives = 219/698 (31%), Gaps = 175/698 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PV-ELWDCVHDPVMPQVLKE 59 +D ET S L ++ + D PV + + +M + E Sbjct: 336 LDTETNSLDQLKT----------RLVGISLSTDIGKAWYIPVAHQVELGCNQLMKAEVLE 385 Query: 60 A----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 A LE+ T + N+ ++ V N I + T+VLA + Sbjct: 386 AMRSWLESEQKTKILQNAKYDMHV---FANEGIVLKGIKHDTMVLAYVIDTNQRVGLEAL 442 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +LK ++K +E+ + K T + + +Y D T + Sbjct: 443 SLKYLNRKGLSYEEICGKGAKAITFDYV----------PLDQATQYACEDADFTFHLLTE 492 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L P E ++ + + G +D + + ++I+ +KL+ E+ + Sbjct: 493 LLPKLEGFEGLKFIYDLEMQVLQVLFDMERVGVLIDSSKLLSQSEIISCRLSKLESEIFN 552 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNR 280 L G + ++L LF + L + T T + L P A+ + R Sbjct: 553 LA-GEEFNINSPKQLSEILFTKLKLETQGKTRTGVISTNEDALEKLALDHPIAVHLLEYR 611 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ P R H Sbjct: 612 SL-------------------------------SKLKSTYTDKLPTMINKVTGRVHTVFS 640 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + DP+ I VR +A +G KL+ AD + +E R++A ++ + Sbjct: 641 QTTVLSGRLSSFDPNLQNIPIRNEDGRQVRQAFVAEDGFKLMSADYSQVELRLMAHISND 700 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + LKAF+ G D++ +T + F V ++V QR K + L Y GA A A+ Sbjct: 701 EGMLKAFKEGADIHRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMGAFAL---ANNL 757 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ T + + + Sbjct: 758 GISRETAQNYI--------------------------------------------YKYFD 773 Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q ++G I +R +P + K R Sbjct: 774 RFPKVRKFMDDIKIQASQDGYVETIYGRRIYIPGIQDSKGA---------------RKAA 818 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 R +N VQ + DI+ M++ K I+L V Sbjct: 819 LERVAINAP------------------VQGSAADIIKMAMISVHKWISQNKLNSRIILQV 860 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 HDE+V E +++ E L LM +PL+A Sbjct: 861 HDELVLEVHESEIEILKLKLPKLMEDVAK--LDVPLEA 896 >gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1] gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1] Length = 941 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 96/594 (16%), Positives = 193/594 (32%), Gaps = 89/594 (14%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLK 58 L D ET S A + ++ +F + D + + LK Sbjct: 369 QLCFDTETTSVN----------AMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQLK 418 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 +N + + N ++ +LK N D+ + + +LA P ++ L Sbjct: 419 PVFQNEKILKIGQNIKYDLLILK---NYDVEVKGKLYDTMLAHYLIEPEGKHSMD---WL 472 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 + Q + I + R EY D +T ++ ++L+P Sbjct: 473 AEQYLNYQPVSITELIGKKGKNQGNMR-----DVDVDQVTEYASEDADITLQLKEKLDPF 527 Query: 179 S----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L + + G +D ++ ++ E +++ ++ + G Sbjct: 528 LKENLLEKLFYEVENPLINVLTEMEFEGIRIDTKSLAEMSISLEKESKEIENKVYEIA-G 586 Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + + ++L LF + L T+T T + +LS A Sbjct: 587 VRFNLASPKQLGDVLFEKLKLDPKAKKTKTGQYATGEEILSKLANEHEIA---------- 636 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R L F + P + + H +Q + Sbjct: 637 ---------------------RAILDFRQMVKLKSTYVDALPTMINSKTGKIHTTYNQFV 675 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 + +P+ I +R + E L+ AD + IE R++A +G++ Sbjct: 676 AATGRLSSINPNLQNIPIRTERGREIRKAFVPRDENHILLAADYSQIELRIMAAFSGDES 735 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF+ G D++ TT A+ F V +VT D R K + Y A + + Sbjct: 736 MIEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANFGIIYGISAFGLSQ---RLSI 792 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + ++ + + + E A D ++ T R ++ R +SR Sbjct: 793 SRTEAKEIIDA------YFKEFPAVKEYMDRAIEKARNDEYVETLLGR-RRYLRDINSRN 845 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570 + + + G A K + + +MKK+ ++L LV+ Sbjct: 846 ATMRGFAERNAINAPIQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDELVF 899 >gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76] gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385] Length = 983 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 124/713 (17%), Positives = 218/713 (30%), Gaps = 187/713 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 398 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K L N + + N +++ V N I ++ +LA + L L Sbjct: 448 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 504 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 505 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 551 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 552 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 611 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 612 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 671 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 700 RVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRI 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 760 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 818 -GLAKSLGIDNLSAKNFID----------------------------------------- 835 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 836 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 877 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------- 617 G R+ +N Q + D++ M++ Sbjct: 878 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSECEAS 919 Query: 618 ---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E +T+ +F L +M +PL AE Sbjct: 920 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 972 >gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] Length = 920 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 116/705 (16%), Positives = 213/705 (30%), Gaps = 178/705 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDP--VMPQVL 57 L +D ET S + ++ +F ++ + + + Sbjct: 348 KILSLDTETTSTNAIE----------AELVGLSFAVEERKAFYVAIPANREEALKIVAIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 K E+ ++ V N ++ VL+ + + + ++A P + + E Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVLRHY---GVEVAGPMFDTMIAHYLLQPELRHNMDYMAE 454 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172 L + +E ELI RN+ N R+ EY D +T + Sbjct: 455 VYLGYRTVHIE---ELI----------GPRGRNQKNMRDLSPTDIYEYACEDADITLRLK 501 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 LEP + E L + + G C+D H +++ + T ++Q + Sbjct: 502 NVLEPKLDEAGVARLFHDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTTIEQHI 561 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 L G + ++ LF + + T+T T + VL + +P ++ Sbjct: 562 YELA-GEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEIL 620 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + G + P PR R H Sbjct: 621 -------------------------------NYRGLKKLLSTYVDALPKLINPRTGRIHT 649 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +Q +T +SDP+ I +R C I G AD + IE R++A + Sbjct: 650 SFNQTVTATGRLSSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHL 709 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ ++AF G D++ T AR ++ +VT +R K + Y +A Sbjct: 710 SEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTY---GLA 766 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 ++ L+ Sbjct: 767 QRMDISNGEARDLIDGYFL----------------------------------------- 785 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 RV + QA E + G A RR LP S Sbjct: 786 TFPRVEA---YMEQAKETARKQGYAETLFHRRRY---------------LPDINSHNATV 827 Query: 573 VGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625 G R+ +N +Q DI+ M+ + ++ Sbjct: 828 RGFAERNAINAP------------------IQGSEADIIKVAMVRIHRRFKAEGIRSKMI 869 Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 L VHDE+ P+ E ++ M ++ +PL A+ G+ Sbjct: 870 LQVHDELNFSVFPEEKEQVERIVVEEMQG--AYKLRVPLVADAGW 912 >gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202] gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202] Length = 950 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 124/624 (19%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN ++ + N ++ TV N I + +L + + Sbjct: 427 QLKPILENPEIKKIGQNIKYDLTV---FANHGINVQGVAFDTMLESYTLNSTGRHNMDDL 483 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K E + + + T + + + + Sbjct: 484 AERYLGHKTIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQLAQEPA 543 Query: 175 LEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L L E L + I G +D A + ++ +L+QE+ S G V + Sbjct: 544 LVKLFDEIELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVHSEA-GSVFNL 602 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L+ LF + GL + T +V L Sbjct: 603 ASTKQLQEILFEKLGLPILKKTPKGAASTNE----------EVLEELAMMGHRVPKLL-- 650 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++ G S+ P + R H Q +T +SD Sbjct: 651 --------------IEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYHQAVTATGRLSSSD 696 Query: 354 PDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 P+ I +R IA +G K+V AD + IE R++A +A ++ LKAF G+D+ Sbjct: 697 PNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHLANDKGMLKAFAEGKDI 756 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T + F V +VT +QR K + L Y +++ G++ Sbjct: 757 HRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEF---GLSNQLGISR--------- 804 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 DA+ + ++ V + ++ Sbjct: 805 -------ADAKQYMEAYF-------------------------NRYPNVLQFMTDIK--A 830 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + + + +R +P + R R +N Sbjct: 831 KAAEKGYVETLLGRRLYLPEIKSSN---------------AMRRKAAERVAINAPM---- 871 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTD-EF 642 Q + DI+ M+ + +++ VHDE+V E + E Sbjct: 872 --------------QGTAADIIKIAMIGIDRVIQHSDEIKMIMQVHDELVFEVKEDKVEH 917 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 ++++ M +PL AE Sbjct: 918 YSAVIKAEMEKAIQ--LNVPLIAE 939 >gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026] gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026] Length = 978 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 202/642 (31%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 509 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 551 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 552 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLVQAAAAY 611 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 612 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 670 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 671 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 699 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 700 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 759 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 760 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 817 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T +E +M+ K Sbjct: 818 -GLANQLSIPREEAGQYIRT-----YFERFPGIKDYMEAT-------------------K 852 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A+ ++H V ++ +R P + P R+ Sbjct: 853 AFAREHGYVETIF-------------------GRRAHYPDIRASN---------PQVRAF 884 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 885 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 926 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 927 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 968 >gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] Length = 930 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 118/656 (17%), Positives = 198/656 (30%), Gaps = 156/656 (23%) Query: 39 DHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D P +L W L+ LE+ V V N ++ V+ I + Sbjct: 392 DAPAQLDREWVLAR-------LQPLLEDEKVAKVGQNLKYDIGVMARH---GIILRGVAF 441 Query: 96 TLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 +L N + A + K +E+ + T + Sbjct: 442 DTMLESYVLNSVAGRHDMDSLAARHLDHKTITFEEVAGKGKGQLTFNQI----------P 491 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVA 202 EY D VT + +RL P+ E L + + G +D Sbjct: 492 LEQAAEYAAEDADVTLRLHQRLWPMLESEAGPRHVFCDIDMPLVPVLSRMERTGVLIDST 551 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 + +Q + V L+Q+ +L + ++L++ LF + L + T Sbjct: 552 ILGQHSQELAVRLNALEQQAHTLAD-EPFNLSSTKQLQSILFDKQQLPILKKTPGGAPST 610 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L A Q + L + ++ Sbjct: 611 NEEV--LVELAEQGYELPQV------------------------ILDYRTLAKLKSTYTD 644 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 P P R H Q +T +SDP+ I +R IA G K+V Sbjct: 645 KLPQMVSPLTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSKIV 704 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ L+AF G+D++ T A F + VT DQR K + Sbjct: 705 AADYSQIELRIMAHLSGDRGLLEAFAAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINF 764 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 L Y A +A + N +A+ + E +P Sbjct: 765 GLIYGMSAF---GLARQLNIGRN----------------EAQRYMDLYFERYP------- 798 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + + +Q E G RR Sbjct: 799 ---------------------GVLAYMERTRQQASEQGYVETLDGRR------------- 824 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 L LP + N R+ +Q + DI+ M+ Sbjct: 825 --LYLP------------EINARNAMRRKAAERAA-----INAPMQGTAADIIKRAMIAV 865 Query: 618 TK------AGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E P+ + S + LM S A +PLK + Sbjct: 866 DAWLQQSQPQVRMIMQVHDELVFEVPEALVDEVVSHVRTLMEG--SLALAVPLKVD 919 >gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901] gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901] Length = 908 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 102/576 (17%), Positives = 178/576 (30%), Gaps = 88/576 (15%) Query: 27 DVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFE 76 D ++ +F + HD + + LK LEN + V N ++ Sbjct: 345 DAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQLSREHVLARLKPLLENDGLKKVGQNLKYD 404 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFC 134 VL N DI + +L S A K +++ + Sbjct: 405 ANVLA---NYDIALKGIAYDTMLESYVHNSTGSRHDMDTLAELHLGHKTIHFEDIAGKGA 461 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQ 183 K T + G Y D +T + + L P + E Sbjct: 462 KQLTFNQI----------KLEEAGPYAAEDADITLRLHQALWPKVAEAEGLKTVFNDVEL 511 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + I G +D L L+ KL++E L G + ++L T L Sbjct: 512 PLVSILSRIERNGALLDTKLLGELSLQHGASIVKLEKEAYELA-GEEFNLGSPKQLATIL 570 Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 F + L + T T + V+ P + +R Sbjct: 571 FEKMNLPVVKKTAKGAPSTNEEVMQELALDYPLPSVILQHRSL----------------- 613 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 S+ P + R H Q + +SDP+ I Sbjct: 614 --------------SKLKSTYTDKLPTMVNKKTGRVHTSYHQAVAATGRLSSSDPNLQNI 659 Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R IA G K+V AD + IE R++A ++ + KAF G D++ +T A Sbjct: 660 PIKTDEGRRIRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGLQKAFAEGLDVHKSTAA 719 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F A V+ +QR K + L Y A +A + N + T Sbjct: 720 EVFGTALENVSSEQRRSAKAINFGLIYGMSAF---GLARQLRIGRNDAQTYIDT------ 770 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + N + A E ++ T R + + +S + Sbjct: 771 YFERYPGVAEYMANIRKSAAEKGYVETLLGR-RLYLPEINSSNGMRRQAAERVAINAPMQ 829 Query: 535 GKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLV 569 G A KR + + +++ ++ + +++ LV Sbjct: 830 GTAADIIKRAMIDVDAWLQTEQIDARIIMQVHDELV 865 >gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] Length = 976 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 116/684 (16%), Positives = 204/684 (29%), Gaps = 148/684 (21%) Query: 5 FIDFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDPVMPQVLKEAL 61 +D ET S PID GI + LF + D + + L+ + Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQTKKETPDQLSIEDVFSKLRNWI 443 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 E+ NS F+R + FN + + +LA Sbjct: 444 EDPKKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN-----------NQEKH 489 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177 + E + F K + + +NK YC DV +T +I K + Sbjct: 490 GLSEISFRLFGF-KPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKESFSK 548 Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + + G +D+ L++ + ++ ++ L Sbjct: 549 EKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELADES 608 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + L + +T T VL + +R Sbjct: 609 -FNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHR---- 663 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 S+ P + R H +Q T Sbjct: 664 ---------------------------TLSKLLSTYIDALPNLINEKTGRVHTNFNQAAT 696 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I S +R + + KL+ AD + IE R+LA +A E+ + Sbjct: 697 ATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILI 756 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF +D++ T F +++ D+R +GK + + Y G +K A +TG++ Sbjct: 757 NAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGVST 811 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E + F E A+ ++ T R ++ Sbjct: 812 PEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE----------- 854 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 K DKN L +L Sbjct: 855 -------------------------------FKFDKNGLGRLLGKDPY------------ 871 Query: 580 LNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHD 630 + R L +Q S DI+ M+ K ++L VHD Sbjct: 872 -EIDLQAARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFTEMNVPAKMLLQVHD 930 Query: 631 EIVCET-PDTDEFNASMLYHLMTS 653 E++ E PD+ E ++ M Sbjct: 931 ELLFEVEPDSLEITTKLVKKTMED 954 >gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] Length = 941 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 113/708 (15%), Positives = 211/708 (29%), Gaps = 184/708 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ------ 55 L ID ET S AE + L F D + + + PV P+ Sbjct: 369 KILSIDTETTS------------AEPMEAELVGMSFSDTENQAY---YVPVPPEREEALK 413 Query: 56 ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109 + EN + V N ++ VL+ N + + + +LA P + Sbjct: 414 IVNEFRPLYENENSMKVGQNIKYDILVLQ---NYGVEVKGELFDTMLAHYVLQPELRHNM 470 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L + ++E + R+ P +Y D +T Sbjct: 471 DYLAEIYLHYQTIHIDE-------LIGPKGKNQKNMRDLPP-----EEVYKYACEDADIT 518 Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ LE K E L + + G +D ++ V ++ Sbjct: 519 LKLKNVLEEELKKQGVEHLFYEIEMPLVRVLANMESNGVRIDTETLKQTSEHFTVRLQEI 578 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQA 273 ++E+ L G + +++ LF + + T+T T + VL S + Sbjct: 579 EKEIYELA-GETFNIASPKQVGEILFDKLKIIDKAKKTKTGQYVTSEEVLESLRNKHEVI 637 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + G + P PR Sbjct: 638 GKILE-------------------------------YRGLKKLLGTYVDALPLLINPRTG 666 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q +T +S+P+ I +R I + + AD + IE R+ Sbjct: 667 RIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDDCEFFSADYSQIELRI 726 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ ++ + AF +G D++ T A+ + + VT D R K + Y Sbjct: 727 MAHLSEDKNMIDAFLSGYDIHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYGISIF-- 784 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A ++ L E +P Sbjct: 785 -GLAERMNVDRKEAKEL----------------IDGYFETYP------------------ 809 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 ++ + ++ + E G R+ LP S Sbjct: 810 ----------QVREYMDKSIQVAREQGYVETIFHRK---------------RFLPDINS- 843 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622 N T R +Q + DI+ M K Sbjct: 844 -----------RNATVRGYAERNA-----INAPIQGSAADIIKVAMARIYERFQSYKLKA 887 Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 ++L VHDE+ P+ + EF ++ M ++ +PL+A+ G+ Sbjct: 888 KMILQVHDELNFSVPEAEKEFVQQIVIEEMER--AYRMHVPLRADCGW 933 >gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 939 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 122/702 (17%), Positives = 207/702 (29%), Gaps = 179/702 (25%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID + A + ++ + F H P+ L K LEN Sbjct: 357 IDTETTSLD--AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQYVLDRLKPHLEN 414 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAV-GEALKLS 119 + + N +++ V N I ++ + +LA + L L + G L L Sbjct: 415 PALKKIGQNLKYDQHV---FANYGIALNGIVGDAMLASYIIESHLGHGLDELSGRWLGLE 471 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171 + E C + A EY D + Sbjct: 472 TITYES-------LCGKGAKQIG------FADVAIGPATEYAAQDADFALRLEAHLRAQM 518 Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+LE E + + + G +D A + + E KL+QE + G Sbjct: 519 DDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYA-AAGQP 577 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + G+ + L +T T + VL P + NR A Sbjct: 578 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSLA- 636 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P PR R H Q + Sbjct: 637 ------------------------------KLKSTYTDKLPEMISPRDKRVHTTYAQAVA 666 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++P+ I VR A G +V AD + IE R++A ++G++ + Sbjct: 667 ITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ GED++ T A F +AP V+ +QR K + L Y G K L+ Sbjct: 727 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 786 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 K + +R Sbjct: 787 -----------------------------------------------KNFIDRYFARYPG 799 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRS 578 + + +A E G RR L LP R R+ Sbjct: 800 VAEYMQRARECAAGQGYVETLFGRR---------------LYLPDIRHTNANIRARAERA 844 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------------AGYDIV 625 +N Q + D++ M++ ++ ++ Sbjct: 845 AINAPM------------------QGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLI 886 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P+ + + L +M + +PL AE Sbjct: 887 MQVHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAE 928 >gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 932 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%) Query: 33 FAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKA 82 +F + HD PQ L K LE+ V N ++ ++L Sbjct: 374 VSFAVAEGEAAYVPVAHDYLDAPQQLDRDWALAQLKPILEDAQQAKVGQNLKYDASILAR 433 Query: 83 CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 DI + +LA N + AL+ +++ + T Sbjct: 434 Y---DINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFN 490 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTR-----------EIFKRLEPLSSKEQELWYLD 189 + Y D VT + K L E L + Sbjct: 491 QI----------DLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVL 540 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 I G ++ L +Q + +L+++ + G + ++L+T F + L Sbjct: 541 SRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDIA-GQEFNLSSPKQLQTIFFDQMKL 599 Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + T +T + VL P + R Sbjct: 600 PVIKKTPSGTPSTNEEVLQELALDYPLPAVILEYR------------------------- 634 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 G ++ P P R H Q +T ++DP+ I Sbjct: 635 ------GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 688 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R +A G K++ D + IE R++A ++G++ L+AF+ G+D++ T A ++ Sbjct: 689 GRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGIS 748 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 QVT +QR K + L Y A +A G+ + T +E Sbjct: 749 IDQVTSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMDT-----YFERYPG 800 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--I 538 ++M++ A E ++ T R + + SR +A G A I Sbjct: 801 VMQYMEDTRST-AAEQGYVETLFGR-RLHLPEITSRNGMRRKAAERAAINAPMQGTAADI 858 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 I + V + + L++ LV+ + S + + ++L Sbjct: 859 IKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMESAA 912 >gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05] Length = 970 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 110/643 (17%), Positives = 208/643 (32%), Gaps = 134/643 (20%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106 + L+ LE+ + V N+ F+R + K I + + +LA P Sbjct: 426 RKEQVLDRLQSILESNNYPKVFQNTKFDRLIFKHQ---GINLDGVVLDTMLASYVLHPEK 482 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L + E L + K+L + + EYC D Sbjct: 483 SHKLSELCEQY-LEGITSLDYKDL------------GIGKKQTIADLDIETVAEYCGMDA 529 Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 T + + L+ L EQ L + + D G +D L++ ++ Sbjct: 530 YATFLLVEPLKNELKTLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQH 589 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 L++ G + ++L LF + L+ + +T Sbjct: 590 LLSLEENAYQ-AAGEKFNLGSPKQLGHILFEKLELNRKKSRKT----------------- 631 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + +E + D + L++ S+ P Sbjct: 632 ----------KTGYSTDHATLEKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDKIDQ 681 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q +T +S+P+ I S +R I + LV AD + IE R+ Sbjct: 682 RIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQQDWLLVSADYSQIELRI 741 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ EQ L A++ +D++ T F+ ++T +R +GK + + Y G++ F Sbjct: 742 LAHLSQEQVLLNAYKNADDVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQRF 799 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + A + + F N + + ++ M++ + Sbjct: 800 AREAGVSAVEGKEF-----INKYRQRYAKVFDYLESMKKEAIANG--------------- 839 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 I+ R+R Y +NL R Sbjct: 840 -------------------------YVTTILGRRR------YFNFFDDNLYRF----RGH 864 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI 624 +++ N+ +N QL R +Q S DI+ M+ ++ Sbjct: 865 DPQNIDLNKININYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANL 918 Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +L VHDE+V E P + E + M + + +PL E Sbjct: 919 LLQVHDELVFEIPHQEWEELEDKIKETMENAVT--LTVPLVVE 959 >gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] Length = 920 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 95/593 (16%), Positives = 188/593 (31%), Gaps = 86/593 (14%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET S A + ++ +F H + + + Sbjct: 348 KILSLDTETTSTN----------AMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K A EN + V N ++ VL I + + ++A P Sbjct: 398 KPAYENEAILKVGQNIKYDMEVLSRY---GIELKGNLFDTMIAHYLLQPE---------- 444 Query: 118 LSSQKMEEGKELIARFCKGETHE--CLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174 M+ E+ R+ E + + N R+ EY D +T ++ Sbjct: 445 -LRHNMDYMAEVYLRYQTVHIEELIGPRGKGQKNMRDLAPNDIYEYACEDADITLQLKNI 503 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LEP + E L + + G +D +++ L+ ++ Sbjct: 504 LEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDTKALQEVSESFTKRMNDLEAQIHQ 563 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 L G + +++ LF + + T+T + Sbjct: 564 LA-GESFNVSSPKQVGDILFEKLQIAEKPKKTKTG---------------------QFVT 601 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S + K T E + L + G + P P+ H +Q + Sbjct: 602 SEEELQKYATGNEIVT------LILDYRGLKKLLGTYVDALPKLINPQTGHIHTSFNQTV 655 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R C I +G AD + IE RV+A ++G++ Sbjct: 656 TATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF+ G D++ T A+ + VT+D+R K + Y +A G++ Sbjct: 716 IEAFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITVF---GLAERLGID 772 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L+ + +++ ++ E + F ++ +S+ + Sbjct: 773 RGEAKQLID--GYFTTFPQVQSYMEQAKDMAREKGYVETFFHR-----RRYLPDINSQNA 825 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 + + G A K + + K +N ++L L + Sbjct: 826 TVRGFAERNAINAPIQGSAADIIKVAMIRIYERFKRENIQSKMILQVHDELNF 878 >gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972] gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972] Length = 932 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 102/594 (17%), Positives = 188/594 (31%), Gaps = 89/594 (14%) Query: 33 FAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFERTVLKA 82 +F + HD PQ L K LE+ V N ++ ++L Sbjct: 374 VSFAVAEGEAAYVPVAHDYLDAPQQLDRDWVLAQLKPILEDAQQAKVGQNLKYDASILAR 433 Query: 83 CFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 DI + +LA N + AL+ +++ + T Sbjct: 434 Y---DINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFN 490 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTR-----------EIFKRLEPLSSKEQELWYLD 189 + Y D VT + K L E L + Sbjct: 491 QI----------DLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVL 540 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 I G ++ L +Q + +L+++ + G + ++L+T F + L Sbjct: 541 SRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDIA-GQEFNLSSPKQLQTIFFDQMKL 599 Query: 250 HL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + T +T + VL P + R Sbjct: 600 PVIKKTPSGTPSTNEEVLQELALDYPLPAVILEYR------------------------- 634 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 G ++ P P R H Q +T ++DP+ I Sbjct: 635 ------GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 688 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R +A G K++ D + IE R++A ++G++ L+AF+ G+D++ T A ++ Sbjct: 689 GRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGIS 748 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 QVT +QR K + L Y A +A G+ + T +E Sbjct: 749 IDQVTSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGEAQAYMDT-----YFERYPG 800 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--I 538 ++M++ A E ++ T R + + SR +A G A I Sbjct: 801 VMQYMEDTRST-AAEQGYVETLFGR-RLHLPEITSRNGMRRKAAERAAINAPMQGTAADI 858 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 I + V + + L++ LV+ + S + + ++L Sbjct: 859 IKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMESAA 912 >gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] Length = 986 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 115/635 (18%), Positives = 202/635 (31%), Gaps = 141/635 (22%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + D N+ ++R +L + + + +LA L+ L Sbjct: 453 LASNDHPKALQNAKYDRLIL---LRHGLALEGVVMDTLLADY------LRDAAAKHGLEV 503 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE---- 176 E K L + + A YC DV +TR + RL Sbjct: 504 MAEREFK------ITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLAIRLRAQLE 557 Query: 177 -------PLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 PL + EQ L + + G +D+ L+ + KL+Q+ + G Sbjct: 558 NMGAQLLPLLEQVEQPLEPVLALMEATGIRIDLPYLKELSIELGNTLEKLEQQAQE-AAG 616 Query: 229 LVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + + ++L LF GL+ + T+T T VL + P V +R+ Sbjct: 617 VNFNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLVLEHRVL- 675 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S+ P R H + +Q + Sbjct: 676 ------------------------------SKLRSTYVDALPQLVESETGRVHTDFNQAV 705 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +S+P+ I S +R + E KL+ AD + IE R+L ++GE+ Sbjct: 706 TATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLLSADYSQIELRILTHLSGEEVL 765 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF G+D++ T + +V++D+R +GK + + Y GA Q+ + +TGL+ Sbjct: 766 QEAFRNGDDVHALTARLL--LDKDEVSEDERRLGKTINFGVIYGMGA---QRFSRSTGLS 820 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + + F E A+ ++ T R + Sbjct: 821 QAEAKDFL--SRYKQRYAKVFTFL----ELQERLALSKGYVETLLGRRRP---------- 864 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 D+N L +L D+ + + Sbjct: 865 --------------------------------FHFDRNGLGRLLGKD----PMDIDLDVA 888 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 Q R +Q S DI+ M+ + ++L VHDE+ Sbjct: 889 RRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQQQLTAADLPARLLLQVHDEL 942 Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 V E T + L M +PL E Sbjct: 943 VLEVDPTALEDVQQLVMQTMEKAVE--LSVPLVVE 975 >gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] Length = 920 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 114/698 (16%), Positives = 211/698 (30%), Gaps = 167/698 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE---LWDCVHDPV---MPQ 55 L +D ET S + AE L F P + + + + Sbjct: 348 KILSLDTETTSTNPME-------AE-----LVGLSFAVEPKKAFYVPVPAKHEDAVNLVK 395 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 + K EN ++ V N ++ VL+ N I + + ++A P + + Sbjct: 396 IFKPLYENEEIVKVGQNIKYDMEVLR---NYGIELKGPMFDTMIAHYVLQPELRHNMDYM 452 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E + + ++LI K + + + D + + Y D +T ++ Sbjct: 453 AEV--YLNYQTIHIEKLIGERGKNQKN--MRDLSPTD-------VYLYACEDADITLQLK 501 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 LEP + E L + + G +D ++ L+ ++ Sbjct: 502 NALEPKLKEAGVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQI 561 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 L G + +++ LF + + T+T + Sbjct: 562 HELA-GESFNVSSPKQVGDILFGKLQIAEKPKKTKTG---------------------QF 599 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S + K E + L + G + P PR H +Q Sbjct: 600 VTSEEELQKYAAGNEIVT------LILDYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQ 653 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R C I +G AD + IE RV+A ++G++ Sbjct: 654 TVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDK 713 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF+ G D++ T A+ + VT+D+R K + Y +A G Sbjct: 714 HMIEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIYGITVF---GLAERLG 770 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ N L+ Sbjct: 771 IDRNEAKQLIDGYFTT-------------------------------------------- 786 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++++ + QA E G RR LP S Sbjct: 787 FPQVYDYMEQAKATAREQGYVETFFHRRRY---------------LPDINS--------- 822 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 N T R +Q + DI+ M+ ++L VHD Sbjct: 823 ---RNATVRGFAERNA-----INAPIQGSAADIIKVAMIRIYKRFKRENIQSKMILQVHD 874 Query: 631 EIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 E+ P+ E ++ M + ++ +PL A+G Sbjct: 875 ELNFSVLPEEKEQVERIVMEEMQN--AYPLRVPLIADG 910 >gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 926 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 106/630 (16%), Positives = 192/630 (30%), Gaps = 138/630 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEA 115 LK L + V V HN ++ V+ L + I + T++L+ G Sbjct: 404 LKPLLADPAVLKVGHNIKYDMQVMA---GLGLAIQSFDDTMLLSYVLDGASHGHGLDELC 460 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + E+ C ++ +DR Y D +T + L Sbjct: 461 LLHLGHRNISFAEV----CGSGRNQVTFDR------VPLDKACAYAAEDADMTLRLHGLL 510 Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ L + + G VD L++ T+L+ E+ +L Sbjct: 511 KPRLLLERMVSVYETLERPLVPVIAAMERDGIKVDRPQLMALSEDFGRRLTELETEVVAL 570 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF L T+T T VL L P ++ + R Sbjct: 571 NNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVLEDLAHLHPLPARLLDWRQ 630 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ Q P R H Sbjct: 631 L-------------------------------SKLKGTYTDALVAQINPATGRVHTSYAL 659 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T +SDP+ I +R +A GK+L+ AD + IE R++A +A + Sbjct: 660 AATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKRLISADYSQIELRLVAHVAEIE 719 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 AF G D++ T ++ F V + R K + + Y +A+ G Sbjct: 720 GLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGISPF---GLAAQLG 776 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + A+ + +PE Sbjct: 777 IPQGE----------------AKAYIEAYFARYPE------------------------- 795 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +T AR++ V ++ GR + + + Sbjct: 796 ------------IRTFMERTKEEAREKGFVTTLF--------------GRKVFTPGIKDK 829 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 + + G + I +A+ R + A ++L VHDE+V E Sbjct: 830 NGAMRAFAERAAINGPIQGGAADIIKRAMIR---LPAALVAEGLKARLLLQVHDELVLEA 886 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 P+ + E ++ +M + + + L ++A Sbjct: 887 PEDETEATVRVVKRVMEAAATLSVPLLVEA 916 >gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498] Length = 968 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 105/628 (16%), Positives = 209/628 (33%), Gaps = 132/628 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LEN V + N ++ V+K +I + + T++L+ AL+A Sbjct: 442 LKPILENQAVLKIGQNIKYDWLVMKQY---NIVMCSFDDTMLLS------YALEAGISTH 492 Query: 117 KLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K G + I+ K TH + + + Y D +T +++ L Sbjct: 493 GMDVLSKRWLGHKPISY--KDLTHSG--RKIVSFAQVDLKQATLYAAEDADITLRLWQVL 548 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + + L + + +RG VD + L+ + L++E+ L Sbjct: 549 KPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQL 608 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF + GL T++ + + + Sbjct: 609 -VGEKFNIASPKQLGDILFGKMGLLGGAKTKSGQWSTSAQTLEELAAEGHILP------- 660 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R + + ++ P LP R H T Sbjct: 661 -------------------RKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATTL 701 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ I +R +AS+G L+ AD + IE R+LA +A + Sbjct: 702 TGRLSSSEPNLQNIPVRTAEGRKIRKAFVASKGYLLLSADYSQIELRILAHVADITALKE 761 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T ++ F VA +T + R K + + Y +AS G++ Sbjct: 762 AFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPF---GLASQLGISRK 818 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + ++ + + Sbjct: 819 EASDYI-----------------------------------------QLYFERFPGIEDY 837 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 I AR V ++ GR + Y ++ +S + Sbjct: 838 ------------MERTKIFARHHGYVETIF--------------GRRIHYPEIKTAKSQI 871 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 + G + I +A+ I E + + ++L VHDE++ E P ++ Sbjct: 872 RAFNERAAINAPIQGSAADIIRRAM---IQMENALEKERLSAKMLLQVHDELIFEVPKSE 928 Query: 641 E-FNASMLYHLM--TSNPSWAKGLPLKA 665 A ++ +M + P+ + +PL+ Sbjct: 929 STKTAILIKKVMENATMPALSLSVPLEV 956 >gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942] gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942] Length = 953 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 120/670 (17%), Positives = 224/670 (33%), Gaps = 156/670 (23%) Query: 36 GFDDHPVEL--WDCVH--DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 + + P +L H +P L+ LE+ N+ F+R +L+ Sbjct: 390 AWGEEPDQLAYIPLGHEEGEQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRHQ--- 446 Query: 87 DIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECL 142 I + + +LA P +L A+ + LKL + ++ L Sbjct: 447 GIELAGVVFDTMLASYLLNPSLGHSLDALADRWLKLQT----------------RSYSDL 490 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQT 191 + K + A +YC DV V + + L+ L + E L + Sbjct: 491 VPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAE 550 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + DRG +D L++ + E +L+ +L G + ++L LF + GL++ Sbjct: 551 MEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLA-GDRFNLGSPKQLSELLFEKLGLNV 609 Query: 252 EDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + +T T VL + P + +R A + ++ L + +D Sbjct: 610 KKSRKTKTGYSTDAAVLEKLQGDHPIIDLILEHRTLAKLKSTY-VDALPSLVAAD----- 663 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 R H + +Q +T +S+P+ I S Sbjct: 664 --------------------------GRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFS 697 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + EG L AD + IE R+LA ++ E L+A+ G+D++ T + F+ Sbjct: 698 RQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR-- 755 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 ++T ++R IGK++ + Y GA Q+ A TG + + + + + Sbjct: 756 EEITSEERRIGKIINFGVIYGMGA---QRFARETGSSTKEAQGFIDRFY--DRYPRVFTY 810 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + AI ++ T R + Sbjct: 811 LQ----SLERQAIARGYVETVLGRRR---------------------------------- 832 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 Y + L R + ++ + QL R Sbjct: 833 --------YFDFEDTG----LQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAP------ 874 Query: 602 VQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPS 656 +Q S DI+ M+ ++L VHDE+V E P + + + + M Sbjct: 875 IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQAVQ 934 Query: 657 WAKGLPLKAE 666 +PL E Sbjct: 935 --LTVPLAVE 942 >gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 996 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 111/634 (17%), Positives = 188/634 (29%), Gaps = 140/634 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V +AHN ++ VL PI + + L + L Sbjct: 470 LKPLLEDDAVLKIAHNMKYDLLVLARYGVDVAPIEDTMLISYTLDTGRNNHGLDEL--TL 527 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRL 175 K + + RN R A EY D VT +++ L Sbjct: 528 KHLGHENIPFSAVA-----------GSGRNFIGFARVALDRATEYATEDADVTLRLWRAL 576 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E + + RG +D A+ L+ + +L+ ++ L Sbjct: 577 KPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRLSGEFAQDMARLEADIFDL 636 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF + GL T T T VL Sbjct: 637 A-GETFNLGSPKQLGDILFGKMGLPGAKKTATGAWSTSASVLEDLANE------------ 683 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + R L + S+ P R H Sbjct: 684 ------------------GNDFARRILDWRQLSKLKSTYTDALPGFVNKETGRVHTSYAL 725 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T +SDP+ I +R +AS G L+ AD + IE R+LA +A Sbjct: 726 AATTTGRLSSSDPNLQNIPVRNEAGRKIRKAFVASPGHVLISADYSQIELRLLAHIADIP 785 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 KAF G D++ T + F V + + R K + + Y A +A+ Sbjct: 786 QLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYGISAF---GLANQLS 842 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + +K + R Sbjct: 843 IPREEAGAYIK--------------------------------------------RYFER 858 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + A ++ + A+ R + S R+ Sbjct: 859 FPGIRDYME-ATKKLVREKGAVTTIFGRVCHFPRIGSANA-------SDRAFY------E 904 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 R+ +N + G + I +A+ R + + + ++L VHDE+V E Sbjct: 905 RAAINAPIQ---------GAAADIIRRAMVR---MDDALASEGLKAQMLLQVHDELVFEA 952 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 P + E + +M P+ A L PLK + Sbjct: 953 PKKEAEATIEIARRVMEEAPAPAVQLAVPLKVDA 986 >gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] Length = 977 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 118/699 (16%), Positives = 197/699 (28%), Gaps = 174/699 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHD-----PVMP---- 54 ID ET S +A L P + H+ +P Sbjct: 404 IDTETTSK--------DPHAA----RLVGISLAVTPWQGCYIPVGHNYAGVPEQLPLDEV 451 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112 VLK LE+ V N ++ VL N I + + +L Sbjct: 452 LAVLKPWLESDAQQKVGQNIKYDMHVLA---NHGITLRGVVDDTMLESYVLEAHRTHGMD 508 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A + ++ +E+ + K + + A + Y D VT ++ Sbjct: 509 ALAGRHLNRTTITYEEVAGKGAKAIGFDQV----------ALDVATPYAAEDADVTLQLH 558 Query: 173 KRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E + + G +D +Q + + +L+++ Sbjct: 559 RTLWPAIEASERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQELERQ 618 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L G + ++L LF GL + T +T + VL P + Sbjct: 619 AHELA-GQPFNLGSTKQLGEILFERLGLPVVKKTPAGKPSTDESVLEKLALDYPLPKVLL 677 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R G ++ P P+ R H Sbjct: 678 QWR-------------------------------GLAKLKSTYTDKLPEMVDPKTGRVHT 706 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + +SDP+ I +R IA G +++ AD + IE R++A + Sbjct: 707 TYSQAVAITGRLASSDPNLQNIPVRTPEGRRIREAFIAPPGHQMMSADYSQIELRIMAHI 766 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + LKAF GED++ T + F V A+V +QR KV+ L Y A +A Sbjct: 767 SQDAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAKVINFGLIYGMSAF---GLA 823 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + G+ + A + + + E + G + Sbjct: 824 ANLGIERGAAQAYIDRYFAR--YPGVAAYMERTRAQAREQGYVETVFGRRL-----WLPE 876 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 S +A G A K + Sbjct: 877 IGSSNMGRRQMAERAAINAPMQGTAADLIKLAMI-------------------------- 910 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632 R G +L + VHDE+ Sbjct: 911 ----------DVHAWLRRENLGARLV---------------------------MQVHDEL 933 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAE 666 V E PD + + L T P+ G +PL AE Sbjct: 934 VLEVPD------AEVERLKTDLPARMAGVAQLSVPLLAE 966 >gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 976 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 107/653 (16%), Positives = 208/653 (31%), Gaps = 144/653 (22%) Query: 43 ELWDCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 + + P +P +LK LE+ V + N ++ V++ + + T+ Sbjct: 430 KAVEDEIGPQLPIDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH-GITMAPFD--DTM 486 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 +++ + ++L G +LS + + C +P A Sbjct: 487 LISYALDASASLAGHGMD-ELSERFLGHKPMSYKELC------GSGKGARPIAACAIDKV 539 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTL 207 Y D VT +++ L+P E + L + + +RG VD + L Sbjct: 540 TAYAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDRQILSRL 599 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263 + ++ L+ E+ + G + ++L LF + GL T++ T RVL Sbjct: 600 SGRFAQKQAGLEAEIAEIA-GETFNPGSPKQLGEVLFGKLGLPGGKKTKSGQWSTDVRVL 658 Query: 264 SSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 P ++ + R +TL M++ GR+ Sbjct: 659 EDLAAEGHPLPRRIVDWRQLTKLKGTYT-DTLPGHMDAQGRI------------------ 699 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 H T +S+P+ I +R+ +A G LV Sbjct: 700 -------------HTSYSMASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPAGHSLV 746 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA +A +AF G D++ T + F V + + R K + Sbjct: 747 SADYSQIELRILAHIADIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINF 806 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y A +A+ + + +K +E +M Sbjct: 807 GIIYGISAF---GLANQLSIPRDEAGTYIK-----RYFERFPGIRDYMDST--------- 849 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 KA+ ++H V L+ Sbjct: 850 ----------KAFAKEHGHVETLF------------------------------------ 863 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 GR + Y D+ + + + + G + I +A+ R E + Sbjct: 864 -------GRRVHYPDIRSPNASVRAFNERAAINAPIQGTAADIIRRAMIR---MEPALAD 913 Query: 618 TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667 ++L VHDE++ E D + ++ +M P +P++ + Sbjct: 914 AGLSARMLLQVHDELIFEVEDDQIDATLPVVRRVMEEAALPVVQLSVPIEVDA 966 >gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425] gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425] Length = 982 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 103/639 (16%), Positives = 206/639 (32%), Gaps = 136/639 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + L+ LE+ N+ ++R VLK + + + +LA P Sbjct: 442 EQLRPLLEDARYPKAFQNTKYDRLVLK-FQGVHL--QGVVFDTMLASYVLNPEG------ 492 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L+ + +++ L ++ + + YC DV T ++ + Sbjct: 493 SHNLTDLSRKYLD------ITAQSYTDLVEKGQNLADLSVEAIANYCGLDVYATFQLVPK 546 Query: 175 LEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L L + EQ L + + G +D L+Q ++ + L++ Sbjct: 547 LRADLLDANPKLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERA 606 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVF 277 L G + ++L LF + L ++ +T T L + P + Sbjct: 607 YGLA-GETFNLGSPKQLSELLFNKLKLDVKKSRKTKLGYSTDAATLEKMQGDHPVIDLIL 665 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R A + P R H Sbjct: 666 EHRTLA-------------------------------KLKSTYVDALPNLVRSDTGRVHT 694 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +Q IT +S+P+ I S +R I G LV AD + IE R+LA + Sbjct: 695 DFNQAITATGRLSSSNPNLQNIPIRTEFSRQIRKAFIPEPGWMLVTADYSQIELRILAHL 754 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + E ++A++ +D++ T + + ++R + K++ + Y GA Q+ A Sbjct: 755 SQEPRLVEAYQQHQDVHKLTAQLL--LEKEDINPEERRLAKIINFGVIYGMGA---QRFA 809 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 +G++ + + + Sbjct: 810 RESGVSFKQAKGFID-----------------------------------------RFYE 828 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V ++ + + ++ R+R Y D L L + Sbjct: 829 RYPLVFRYLKQMEGQAI-ALGYVETLLGRRR------YFSFDSRELQ-QLRGKDPDSLAE 880 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----DIVLTV 628 + ++ ++ R R +Q S DI+ M+ + ++L V Sbjct: 881 LDLSQLKVSQYDRGQLRAAANAP------IQGSSADIIKVAMIKLQQRLQPYQTRLLLQV 934 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P ++ E S++ M +PL AE Sbjct: 935 HDELVFEMPPSEWEPLRSLIQATMAEAVP--LSIPLLAE 971 >gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013] Length = 983 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 121/702 (17%), Positives = 212/702 (30%), Gaps = 179/702 (25%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID + A + ++ + F H P+ L K LEN Sbjct: 401 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGHLKPYLEN 458 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119 + + N +++ V N I ++ +LA + L L + E L L Sbjct: 459 PALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGLDELSERWLGLE 515 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-L 178 + E C + A EY D + L + Sbjct: 516 TITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFALRLEAHLRAQM 562 Query: 179 SSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+ E++ + + G +D A + + E KL+QE + G Sbjct: 563 DEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 621 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + G+ + L +T T + VL P + NR A Sbjct: 622 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA- 680 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P P+ R H Q + Sbjct: 681 ------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQAVA 710 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I VR A +G +V AD + IE R++A ++G++ + Sbjct: 711 ITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ GED++ T A F AP V+ +QR K + L Y G +A + G++ Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 827 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + + R Sbjct: 828 LSAKNFID--------------------------------------------RYFDRYPG 843 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578 + + + EQ G RR L LP R+ G R+ Sbjct: 844 VAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNKNANARAGAERA 888 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------------TKAGYDIV 625 +N Q + D++ M++ ++ Sbjct: 889 AINAPM------------------QGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLI 930 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E +T+ +F L +M +PL AE Sbjct: 931 MQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 972 >gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] Length = 930 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 93/551 (16%), Positives = 175/551 (31%), Gaps = 76/551 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEA 115 LK LEN + V N ++ L I + T++L+ A Sbjct: 409 LKPILENPVIEKVGQNIKYD---LSIFARNGINVQGVTYDTMLLSYVLDSTGRHNMDDLA 465 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +E+ + T + + Y D +T ++ + L Sbjct: 466 KRYLGHQTISFEEIAGKGKGQLTFDQI----------PLEHATTYAAEDADITMKLQQVL 515 Query: 176 -EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E +S + E L + + G +D T + + T L+Q+ Sbjct: 516 WEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVLIDSNTLLTQSNKIAERLTALEQQAYE 575 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF + GL + T T + VL + +R Sbjct: 576 LA-GQTFNLASTKQLQEILFDKLGLPVLKKTPKGAPSTNEEVLEELAYDHELPKLLVEHR 634 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P R H Sbjct: 635 -------------------------------GLSKLKSTYTDKLPQMINKHTGRVHTSYH 663 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +SDP+ I +R I EG +V AD + IE R++A ++ + Sbjct: 664 QAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIPREGFTMVAADYSQIELRIMAHLSKD 723 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 Q + AF G+D++ +T A F + QVT +QR K + L Y + ++ Sbjct: 724 QGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIYGMSSF---GLSRQL 780 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ N + + + + F ++E ++ T +R + +S Sbjct: 781 GIPRNDAQKYMD--LYFQRYPGVQTFMTDIRETAKAQG----YVATLFDR-RLYLPDINS 833 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + G A KR + L ++ +++ LV+ Sbjct: 834 SNAIRRKAAERVAINAPMQGTAADIIKRAMIDLDKQIVGNPDIQMIMQVHDELVFEVRSE 893 Query: 576 NRSYLNTTTRQ 586 + +Q Sbjct: 894 KVEEFSQLIKQ 904 >gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] Length = 1001 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 110/641 (17%), Positives = 195/641 (30%), Gaps = 154/641 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-A 115 LK LE+ + +A N ++ V+ + + + T++L+ + + E + Sbjct: 475 LKPMLEDRGILKIAQNLKYDWLVMTRH---GVDVDPYDDTMLLSYTVDAGKGGNGMDELS 531 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K KE+ C +D+ A Y D VT ++ L Sbjct: 532 ERWLGHKPIPFKEV----CGSGKSMITFDK------VAIDKATAYAAEDADVTLRLWLTL 581 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ + + + RG VD + L+ L+ E+ L Sbjct: 582 KPRLASDHMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGDFAQGAAALESEIYEL 641 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280 G + ++L LF + GL T+T T +VL P ++ R Sbjct: 642 A-GETFNVGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDLAAEGHPLPSKIVEWR 700 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ P P R H Sbjct: 701 QL-------------------------------SKLKSTYTDALPGYINPETKRVHTSYS 729 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T +S+P+ I +R IA +G+KL+ AD + IE RVLA MA Sbjct: 730 LAATTTGRLSSSEPNLQNIPVRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAHMADI 789 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 KAFE G D++ T + F + R K + + Y A +A+ Sbjct: 790 PQLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAF---GLANQL 846 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + K + Q+ Sbjct: 847 GISRGEAGDYI-----------------------------------------KTYFQRFP 865 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + + + I RK + P+ R+ Sbjct: 866 GIKDYMEAVKKQV-HADGYVTTIFGRKAHYPEVNTKN----------PNMRAFY------ 908 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 R+ +N +Q + DIL M+ K ++L VH Sbjct: 909 ERAAINAP------------------IQGSAADILRRAMVRMEDRLTASKLDAQMLLQVH 950 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAK--GLPLKAEG 667 DE++ E P+ E ++ +M + A +PL+ + Sbjct: 951 DELIFEVPEDQVEATIPLIKDVMENACDPALKFSVPLQVDA 991 >gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] Length = 944 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 108/629 (17%), Positives = 188/629 (29%), Gaps = 136/629 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ V + ++ V N I + T++ + A ++ Sbjct: 418 LEDETRKKVGQHLKYDAHV---FANHGIALRGIAHDTMLQSYVLASHRNHGMDALAERVL 474 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K +E+ C + +D A EY D +T + + L P Sbjct: 475 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 524 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + Q + G VD + + +L+Q+ +L G Sbjct: 525 TEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLELEQQAFALA-G 583 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + L + T +T + VL + P + Sbjct: 584 QPFNLNSPKQIGELFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 636 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 F G ++ P P+ R H Q Sbjct: 637 ------------------------DFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 672 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R +A G +V AD + IE R++A ++ ++ + Sbjct: 673 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLM 732 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A F V P +VT +QR KV+ L Y A +AS G+ Sbjct: 733 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 789 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKHSRVS 518 + + + R+M E + A E ++ T R + W + Sbjct: 790 DAAKLYID-----RYFARYPGVARYMDET-RQVAHERGYVETVFGR--RLWLPDINGGNG 841 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +A G A K + Sbjct: 842 PRRQAAERAAINAPMQGTAADLIKLSML-------------------------------- 869 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + GK G+ T+ +V+ VHDE+V E P Sbjct: 870 ----AVQDWLEGSPNAGK---------------PGVPMRTR----LVMQVHDELVLEVPQ 906 Query: 639 TDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 + L LM S +PL AE Sbjct: 907 DELARVRERLPELMCDVAS--LRVPLVAE 933 >gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] Length = 986 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 118/699 (16%), Positives = 217/699 (31%), Gaps = 161/699 (23%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-------------- 60 D + + ++ + +G + P L EA Sbjct: 391 DTETTALNPFCAELVGLGVCWGEGLQDLAYIPI--GHHPPAELLEAEAACQLPLEAVLKA 448 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L + D N+ ++R +L + + + +LA L+ Sbjct: 449 IAPWLASNDHPKALQNAKYDRLIL---LRHGLALEGVVMDTLLADY------LRDAAAKH 499 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR------- 169 L E K L + + A YC DV +TR Sbjct: 500 GLEVMAEREFK------ITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLALRLR 553 Query: 170 ----EIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 ++ +L PL + EQ L + + G +D+ TL+ + +L+++ Sbjct: 554 AQLEDMGAKLLPLLEQVEQPLEPVLALMEATGIRIDLPYLQTLSVELGETLERLEEQARE 613 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQAIQVFNN 279 G+ + ++L LF GL+ + T+T T VL + P V + Sbjct: 614 -AAGVDFNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLVLEH 672 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R+ S+ P R H + Sbjct: 673 RVL-------------------------------SKLRSTYVDALPQLVESETGRVHTDF 701 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q +T +S+P+ I S +R + E +L+ AD + IE R+L ++G Sbjct: 702 NQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWQLLSADYSQIELRILTHLSG 761 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E+ +AF G+D++ T + +V+ D+R +GK + + Y GA Q+ A + Sbjct: 762 EEVLQEAFRNGDDVHALTARLL--LDKDEVSSDERRLGKTINFGVIYGMGA---QRFARS 816 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 TG++ + + + + F E A+ + ++ T R + Sbjct: 817 TGVSQAEAKDFL--SRYKQRYAKVFTFL----ELQERLALSEGYVETLLGRRRP------ 864 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 D+N L +L D+ Sbjct: 865 ------------------------------------FHFDRNGLGRLLGKD----PMDID 884 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 + + Q R +Q S DI+ M+ + ++L V Sbjct: 885 LDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQEKLTAADLPARLLLQV 938 Query: 629 HDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P E ++ M +PL E Sbjct: 939 HDELVLEVDPTALEDVQQLVVQTMEKAVE--LSVPLVVE 975 >gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196] Length = 938 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 125/713 (17%), Positives = 218/713 (30%), Gaps = 187/713 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDSMLASYIIESHLGHGL 459 Query: 110 KAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + G L L + E C + A EY D Sbjct: 460 DELSGRWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------- 617 G R+ +N Q + D++ M++ Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSECEAS 874 Query: 618 ---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 927 >gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65] gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65] Length = 916 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 199/624 (31%), Gaps = 106/624 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL------- 57 ID ET S KY E ++ + + HD P+ L Sbjct: 342 IDTETTSL---------KYME-AEIVGISLAVAPNEACYIPLAHDYAGAPEQLDRDWVLQ 391 Query: 58 --KEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSAL 109 K LE+ V N ++ VLK D + ++ ++ N A Sbjct: 392 KMKPLLEDETPKKVGQNLKYDAHVLKNYDIELNGIAHDTMLESYVLNSTASKHNMDDLAK 451 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +G + + + + + K T + GEY D +T Sbjct: 452 HYLG-------HECIDFESIAGKGAKQLTFNQIPV----------EQAGEYAAEDADITL 494 Query: 170 EIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L P E L + + G V+ H + ++ +L Sbjct: 495 RLHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNADKLHQQSSEIEQRLQEL 554 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274 +++ + G V + ++L+ F + L + T T + VL Sbjct: 555 ERKAHDIA-GEVFNLGSTKQLQAIFFEKLELPVIKKTPKGQPSTAEEVLVELSHDYELPK 613 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R G ++ P + R Sbjct: 614 VILEHR-------------------------------GLAKLKNTYTDKLPLMINSKSQR 642 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q +T +SDP+ I +R A EG LV AD + IE R++ Sbjct: 643 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRKIRQAFEAPEGYTLVAADYSQIELRIM 702 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++G++ L AF+ G+D++ T A V A V +QR K + L Y A Sbjct: 703 AHLSGDKGLLDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSAF--- 759 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A G+ + + ++ D + E+ E A + ++ T R + Sbjct: 760 GLARQLGIGRSEAQEYID------KYFDRYPGVKKYMESTRELAAKQGYVETLFGR-RLY 812 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSL 568 + +SR + G A KR + + ++++ +++ +++ L Sbjct: 813 LPEINSRNGMRRQAAERTAINAPMQGTAADIIKRAMIKMHQWIQESAHDVHMIMQVHDEL 872 Query: 569 VYRDVGNNRSYLNTTTRQLTREYT 592 ++ ++ + + Sbjct: 873 IFEVPDGQLDAVSAEIKSIMEAAA 896 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 10/98 (10%) Query: 577 RSYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 R YL +R R +Q + DI+ M+ +++ VH Sbjct: 810 RLYLPEINSRNGMRRQAAERTAINAPMQGTAADIIKRAMIKMHQWIQESAHDVHMIMQVH 869 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE++ E PD + ++ + +M + +PL + Sbjct: 870 DELIFEVPDGQLDAVSAEIKSIMEAAAD--LDVPLLVD 905 >gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803] gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803] Length = 986 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 115/641 (17%), Positives = 207/641 (32%), Gaps = 134/641 (20%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107 ++ +L E L N V N+ F+R VL I + + +LA P Sbjct: 444 GIIKDLLGEILGNAIYPKVLQNAKFDRRVLAHH---GIELGGVVLDTMLASYVLQPEETH 500 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + L + K+L +++ G+YC D Sbjct: 501 NLTDLCRRYNLGLVALSY-KDL------------GLKKDQTIADLPLETAGQYCGLDCYA 547 Query: 168 TREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T + +L+ L EQ L + + DRG +D TL+Q + Sbjct: 548 TYLLASKLQKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLL 607 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 ++ G + ++L T LF + GL + +T Sbjct: 608 TIETAAYE-AAGESFNLSSPKQLGTILFDKLGLDRKKSRKT------------------- 647 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 ++ + +E + D + L+ ++ P + R Sbjct: 648 --------KTGYSTDHATLEKLQGDHPIIDAILEHRTLAKLKSTYVDALPELVNGQTQRI 699 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H + +Q +T +S+P+ I S +R + + LV AD + IE R+LA Sbjct: 700 HTDFNQAVTSTGRLSSSNPNLQNIPIRSDFSRQIRRAFLPQKDWLLVSADYSQIELRILA 759 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ E L+A+ +D++ T F +T +R +GK + + Y GA Q+ Sbjct: 760 HLSQEPVLLQAYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTINFGVIYGMGA---QR 814 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 A TG++ + + ++ M+ +G Sbjct: 815 FARETGISAVEGREFIDRYH--RTYAQVFDYLETMKLEAIAKGYVTTIVGR--------- 863 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R+ + V+E +L GK + DV Sbjct: 864 RRYFNFVTEALRQLR---------GKTVTELDLVDVK----------------------- 891 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----DIVL 626 +N QL R +Q S DI+ M+ K ++L Sbjct: 892 ---------MNYNDAQLLRSAANAP------IQGSSADIIKIAMVKLAKLLESYQTRMLL 936 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE++ E P + E A ++ + M + +PL E Sbjct: 937 QVHDELIFEMPPEEWEELAPLIQNTMEQ--ALTLSVPLVVE 975 >gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] Length = 928 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 122/682 (17%), Positives = 214/682 (31%), Gaps = 168/682 (24%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPV-MPQVL---------KEALENTDVTIVAHNSYFE 76 ++ +F ++ HD V PQ L K LE+ + V + ++ Sbjct: 364 QAELVGMSFSIEEGDAAYLPLAHDYVDAPQQLDRSAVLALFKPLLEDKNKAKVGQHLKYD 423 Query: 77 RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + VL N DI + +L N + + A +++ + Sbjct: 424 KNVLA---NYDINLQGIAYDTMLESYVLNSVATRHDMDSLAQYYLGLSTVHFEDIAGKGA 480 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLE--P-----LSSKEQ 183 K T + +Y D +T I+++L P L+ E Sbjct: 481 KQLTFNQI----------PLDQAAQYAAEDADITLRLHNHIWQKLHQTPELASVLTEIEV 530 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G +D +Q + +L++E+ L G + ++L+ L Sbjct: 531 PLATVLAKMEQFGVLIDSQKLSQQSQDLATRIMQLEREVHELA-GEEFNLGSTKQLQEIL 589 Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 F + L + T T + VL P + R+ Sbjct: 590 FNKLSLPVLKKTPKGAPSTSEEVLQELALTYPLPKLLMEFRVL----------------- 632 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 S+ P PR R H Q IT +++P+ I Sbjct: 633 --------------SKLKNTYTDKLPKMINPRSGRVHTSYHQAITATGRLSSTEPNLQNI 678 Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 VR IA G K+V AD + IE R++A ++ ++ LKAF G+D++ T A Sbjct: 679 PIRTEQGRRVRQAFIARPGYKIVAADYSQIELRIMAHLSQDEGLLKAFSQGKDIHTATAA 738 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 FNV+ +VT +QR K + L Y A ++ ++ Sbjct: 739 EVFNVSLTEVTTEQRRNAKAINFGLIYGMSAF---GLSKQLNVSR--------------- 780 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 DA+++ E +P + + + EN Sbjct: 781 -HDAQHYMDLYFERYP----------------------------GVLKYMEDSRIVAKEN 811 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTY 593 G RR L LP + R G R+ +N Sbjct: 812 GYVSTVFGRR---------------LYLPDINASNGLRRKGAERAAINAPM--------- 847 Query: 594 GGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPD-TDEFNAS 645 Q + DI+ + M+ +++ VHDE++ E + E + + Sbjct: 848 ---------QGTAADIIKKAMLKVDAWIDTLPSDQTRMIMQVHDELIFEIKEQNVENDKN 898 Query: 646 MLYHLMTSNPSWAKGLPLKAEG 667 + LM S +PL E Sbjct: 899 TIVDLMEKAVS--LDVPLIVEA 918 >gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893] gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893] Length = 911 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 101/588 (17%), Positives = 188/588 (31%), Gaps = 91/588 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D + +Y D V+ +F + HD + LK LE+ Sbjct: 337 DTETTSL-RYM-DADVVGVSFAIEPGEAAYVPFGHDYMGAPEQLDRDTVLSQLKPLLEDP 394 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + N +++ VL N I ++ +L N + S A++ ++ Sbjct: 395 KKAKLGQNLKYDKNVLA---NHGINLNGIAEDTMLESYVLNSVGSRHDMDSLAMQYLGEQ 451 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 + + + K T + G Y D +T + + L P K Sbjct: 452 TITFESIAGKGAKQLTFNQI----------ELEQAGPYAAEDADITLRLHQALRPQLEKT 501 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + RG + + +Q + +L++E G Sbjct: 502 GRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRKHSQELAERMAELEKEAHEEA-GESF 560 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ + + GL + T T + VL + +R Sbjct: 561 NLGSPKQLQAIFYDKMGLPVVKKTPKGAPSTAEPVLQELAHEHTLPRLILEHRSL----- 615 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 S+ P R R H Q +T Sbjct: 616 --------------------------SKLKSTYTDTLPELIHHRTGRIHTSYHQAVTATG 649 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R +A EG KLV AD + IE R++A ++G++ L AF Sbjct: 650 RLSSSEPNLQNIPIRSEQGRRIRQAFVAPEGYKLVAADYSQIELRIMAHLSGDKGLLTAF 709 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 E GED++ T A F VA V+ DQR K + L Y A + L++ Sbjct: 710 EKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINFGLIYGMSAFGLSRQ-----LDVGRH 764 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + E + + +++ + + F G + ++R ++ Sbjct: 765 QAQEYIDRYFERYPAVLKYMDNIRKQAHDDGYVETFYGRRL-----YLPEINARNKQMQQ 819 Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + G A II R V + +++ ++L L Sbjct: 820 AAERTAINAPMQGTAADIIKRAMVSVEDWLQEHHQDDARMILQVHDEL 867 >gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902] gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902] Length = 998 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 116/660 (17%), Positives = 211/660 (31%), Gaps = 146/660 (22%) Query: 41 PVELWDCVHDPVMP-QVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 P EL + +P + + AL + N+ ++R +L + ++ + Sbjct: 440 PSELSEATPPQQLPLETVLMALSPWLASPQHPKALQNAKYDRLIL---LRHGLTLNGVVI 496 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 +LA L+ L E + T+ L + + A Sbjct: 497 DTLLADY------LRDAAAKHGLDLMSEREF------GFRPTTYGDLVGKKQTFADVAIE 544 Query: 156 LFGEYCKGDVTVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 YC DV VTR + + L L EQ L + + G +DV Sbjct: 545 PASLYCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPY 604 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---T 258 TL+ + +L+ + + + + + ++L LF GL + T+T T Sbjct: 605 LKTLSDELGSTLNRLETDAKQVA-EVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFST 663 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P V +R+ S+ Sbjct: 664 DATVLEKLENDHPVVPLVLEHRVL-------------------------------SKLKS 692 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373 P R H + +Q +T +S+P+ I S +R + EG Sbjct: 693 TYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEG 752 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE R+L ++GE+ +A+ TG+D++ T + V+ D+R +GK Sbjct: 753 WTLLSADYSQIELRILTHLSGEEVLQEAYSTGDDVHALTARLL--LDKDDVSADERRLGK 810 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y GA Q+ A TG++ + + + F E A Sbjct: 811 TINFGVIYGMGA---QRFARETGVSSAEAKEFL--TKYKQRYPKVFAFL----ELQERLA 861 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + ++ T R + Sbjct: 862 LSRGYVETILGRRRP------------------------------------------FHF 879 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 D+N L +L ++ + + Q R +Q S DI+ Sbjct: 880 DRNGLGRLLGKD----PLEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVA 929 Query: 614 MMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 M+ ++L VHDE+V E PD + +++ + M + +PL E Sbjct: 930 MVQLQAVLLSQGIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAVK--LSVPLVVE 987 >gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] Length = 997 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 111/637 (17%), Positives = 204/637 (32%), Gaps = 145/637 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 LK LE+ V +A N ++ ++ +D+ T++++ G P Sbjct: 470 LKPLLEDKSVLKIAQNLKYDLVIMSRY-GIDVAPFD--DTMLISYVLDAGTPHGHGMDAL 526 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A K + K++I + +D + + D VT ++ Sbjct: 527 ADKWLGHTPLQLKDVIGSG----KNSVGFD------QVDIDKATAHAAEDADVTLRLWLV 576 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P + E+ L + + RG VD + L+ + +L++E+ Sbjct: 577 LKPRLAATGLVSVYERLERPLVSVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQ 636 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF GL T+T T ++L ++ + Sbjct: 637 L-VGERINIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDW 695 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ P P R H Sbjct: 696 RQL-------------------------------TKLKSTYTDALPGFIHPETKRVHTSY 724 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T +SDP+ I +R+ IA +G +LV AD + IE RVLA +A Sbjct: 725 ALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAE 784 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF G D++ T + FNV + + R K + + Y A +A+ Sbjct: 785 IPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQ 841 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + ++ +K + Sbjct: 842 LSIPREEASNYIK--------------------------------------------KYF 857 Query: 515 SRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 R + + + + E+G I +R P + PS R+ R Sbjct: 858 ERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSN---------PSIRAFNERAS 908 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 N R G + I +A+ R + + K ++L VHDE++ Sbjct: 909 INARL---------------QGTAADIIRRAMVR---MDEALEKAKLSARMLLQVHDELI 950 Query: 634 CETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667 ET D + E ++ H+M + P+ + +PL + Sbjct: 951 FETVDAEVEATIPIVRHVMENAAMPAVSMSVPLHVDA 987 >gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594] Length = 938 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 125/712 (17%), Positives = 218/712 (30%), Gaps = 185/712 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + K Sbjct: 773 -GLAKSLGIDNISA--------------------------------------------KN 787 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G + GR L Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQG-----------------------FVETLFGRRL 824 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----------- 617 D+ N NT R +Q + D++ M++ Sbjct: 825 YLPDIRNK----NTNARAGAERAA-----INAPMQGTASDLIKRAMIDVSRWLSECEASP 875 Query: 618 --TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E +T+ +F L +M +PL AE Sbjct: 876 WDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 927 >gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] Length = 921 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 93/603 (15%), Positives = 191/603 (31%), Gaps = 90/603 (14%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + +D ET S L ++ +F ++ Q + A Sbjct: 349 RIVSLDTETTSLNALE----------AELVGLSFSVSPQEAFYVPIPNEQQKAQKIVNAF 398 Query: 62 ----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL 116 EN ++ V N ++ VL+ N I + + ++A P A Sbjct: 399 QPLYENEEIEKVGQNIKYDIEVLR---NYGITMKGPLFDTMIAHYLLQPELRHNMDDMAE 455 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K +LI KG+ + +Y D +T ++ E Sbjct: 456 TYLRYKTIHIDQLIG--AKGKDQLNMRSLAP-------EQIVDYACEDADITLQLKNIFE 506 Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E L Y+ + G +DV +++ + + + +Q++ L Sbjct: 507 PKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQALSEVSKTFNEQLSLYEQKIYELA 566 Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ T LF + + T+T T + L P ++ Sbjct: 567 -GETFNISSPKQVGTILFEKLKVAEKPKKTKTGQYVTSEEELQKLINKHPIIDEILK--- 622 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + G + P P+ H +Q Sbjct: 623 ----------------------------YRGLKKLLSTYVDALPKLVNPKTGNIHTSFNQ 654 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T +SDP+ I +R C I +EG AD + IE R++A ++G++ Sbjct: 655 ATTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPNEGCLFFSADYSQIELRIMAHLSGDE 714 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF G D++ T A+ + +VT+D+R K + Y +A Sbjct: 715 NMIEAFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIYGITVF---GLAERLN 771 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + N L++ + + + +E ++ + F+ ++ +S+ Sbjct: 772 IERNEAKQLIE--GYFSTFPQVQAYMEQCKETAKQNGYVETFMHR-----RRYLADINSQ 824 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGN 575 + + + G A K V + ++ ++L L + + N Sbjct: 825 NATVRGYAERNAINAPIQGSAADIIKLAMVRIYERFNNEGIKSKMILQVHDELNFSVLPN 884 Query: 576 NRS 578 + Sbjct: 885 EKE 887 >gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1] gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1] Length = 919 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 105/660 (15%), Positives = 195/660 (29%), Gaps = 156/660 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFE 76 ++ + + HD P+ L LE+ V + ++ Sbjct: 357 QAELVGVSVAIEAGKAAYIPVAHDYEDAPEQLDRDWVLEQLKPWLEDEGKAKVGQHLKYD 416 Query: 77 RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 VL N DI + +L N + + K + +++ + Sbjct: 417 ANVLN---NYDITLRGIKFDTMLESYVFNSTGTRHDMDSLSSKFLGHSTVKFEDIAGKGA 473 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQ 183 K +T + Y D +T + + + P K E Sbjct: 474 KQKTFNQI----------DLEQAAFYAAEDADITLRLHQAILPKLEKTPELVSVFSDIEL 523 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G +D H + + +++ + G + ++L+ L Sbjct: 524 PLVPVLAKMEQTGALIDPDRLHAQSAEIASRLQEVEIKAHEEA-GQEFNLSSPKQLQEIL 582 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F + GL + T P ++ N Sbjct: 583 FEKQGLPVIKKTPKGQPSTAE------PILQELAENYELP-------------------- 616 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 R ++ ++ P + R H Q +T ++DP+ I Sbjct: 617 -RLIMEHRSLAKLKSTYTDKLPEM-IQHTGRIHTSYHQAVTATGRLSSTDPNLQNIPIRT 674 Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +A EG KLV AD + IE R++A ++ ++ L AF ED++ T A F Sbjct: 675 QEGRRIRQAFVAPEGHKLVAADYSQIELRIMAHLSQDKGLLDAFAHDEDVHKATAAEVFE 734 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 VA VT +QR K + L Y A +A G++ +A Sbjct: 735 VAVDDVTAEQRRRAKAINFGLIYGMSAF---GLAKQLGISR----------------PEA 775 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 + + + E +P + T N + + +TI Sbjct: 776 QKYVQRYFERYP--GVRTYMETTRE------------------NAKEKGYVETIF----- 810 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 GR L ++ N RQ Sbjct: 811 --------------------------GRRLYLPEIK----ARNAMMRQAAER-----TAI 835 Query: 599 ENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651 +Q + DI+ M+ T G +++ VHDE++ E + D E + + +M Sbjct: 836 NAPMQGSAADIIKRAMIKMHNWLADTDLGVKMIMQVHDELIFEVAEKDLEAAQAKIIDIM 895 >gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] Length = 948 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 106/599 (17%), Positives = 201/599 (33%), Gaps = 85/599 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENTDVTIVA 70 D G+ ++ AF ++ D Q L E EN ++ + Sbjct: 380 DTETTGLNP--LTAELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRPFFENDNIEKIG 437 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VL ++ + + +LA P A + EL Sbjct: 438 QNLKYDIKVLAKY---NVEVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNYTPISITEL 494 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I + K L R P EY D +T ++ + E + Sbjct: 495 IGKKGK----NQLSMREVP-----LDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFN 545 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +D ++L++ ++ + L++ + G + ++L Sbjct: 546 DIELPLLRVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYE-AAGEEFNIASPKQL 604 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T+T T + VLS K QV Sbjct: 605 GVILFEKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVL----------------- 647 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 F G S+ P Q R H + Q + +++P Sbjct: 648 --------------DFRGLSKLKSTYVDALPLQVDESTGRVHTDYMQTVAATGRLSSNNP 693 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR + E L+ AD + IE R++A ++ E+ ++AF+ GED+ Sbjct: 694 NLQNIPIRTERGRQVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKNGEDI 753 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T ++ FNV +VT++QR+ K + + Y A +++ T L+ + L++T Sbjct: 754 HASTASKVFNVPITEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRSEAKELIET 810 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A R + A ++ ++ T R ++ + +SR + + + Sbjct: 811 YYATYPK------LRAYMSEQVDFARDNGYVQTVLGR-RRYLKDINSRNAVVRGAAERNA 863 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLNTTTR 585 G A K + +Y K ++L LV+ L + Sbjct: 864 VNAPIQGSAADIIKIAMI-NIYKKLQTGAYKTKMLLQVHDELVFDVYKPELEGLKNLIK 921 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 23/151 (15%) Query: 525 HQAFEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 ++ IE A + R + V +D + +L R L N+R N Sbjct: 801 RSEAKELIETYYATYPKLRAYMSEQVDFARDNGYVQTVLGRRRYL---KDINSR---NAV 854 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET- 636 R +Q + DI+ M+N K ++L VHDE+V + Sbjct: 855 VRGAAERNA-----VNAPIQGSAADIIKIAMINIYKKLQTGAYKTKMLLQVHDELVFDVY 909 Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 P+ + +++ M + ++ +PL + Sbjct: 910 KPELEGLK-NLIKTEMEN--AYELSVPLDVD 937 >gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6] gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6] Length = 934 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 124/702 (17%), Positives = 212/702 (30%), Gaps = 180/702 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV---- 56 ID ET S + +I +F HD +P Sbjct: 361 IDTETDSLDPMR----------ARIIGISFAVQPLEAAYVPVGHDYPGAPDQLPLDEVLA 410 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAV 112 L+ LE+ V N ++ V N + + + +L P L ++ Sbjct: 411 RLRPWLEDAGTRKVGQNIKYDSHV---FANHGVTVRGYAHDTMLESYVLEAHKPHGLASL 467 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + L E P A Y D +T ++ Sbjct: 468 ADRH------------LGRSGINYEDLCGKGAGQIPFSHVAVDQASTYSGEDSEMTLQVH 515 Query: 173 KRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P E L L + I G +D + + + L+QE Sbjct: 516 QTLWPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAGVLARQSHQLAQRMHTLEQE 575 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277 ++ G + +++ LF + GL ++ T +T + VL P ++ Sbjct: 576 AHAIA-GQPFNMSSPKQIGEILFTKLGLPVKKKTASGAPSTDEEVLQELAADYPLPARIL 634 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R A + P P R H Sbjct: 635 EHRSLA-------------------------------KLKGTYTDKLPLMVNPSTGRVHT 663 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + ++DP+ I VR +A+ G KLV AD + IE R++A + Sbjct: 664 NYAQAVAITGRLSSNDPNLQNIPIRTAEGRRVREAFVAAPGHKLVSADYSQIELRLMAHI 723 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ LKAF G D++ T A FN+A A VT +QR K + L Y GA +A Sbjct: 724 SGDANLLKAFADGMDVHRATAAEVFNIAAADVTSEQRRYAKTINFGLIYGMGAF---GLA 780 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 ++ G+ ++ + + R+M E Sbjct: 781 ASLGIEQKAARDYIE-----RYFARYPDVKRYMDET------------------------ 811 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YR 571 +A + + + + R+ ++LP + R Sbjct: 812 -------------KAGAAQLGHVETLFGRR-----------------IVLPEIKGGNGPR 841 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 R +N Q + D++ M+ KA ++ Sbjct: 842 KAAAERQAINAPM------------------QGTAADLIKLAMIAVQKAIDDEGRASKMI 883 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P+ + + L LM +PL AE Sbjct: 884 MQVHDELVLEVPEAELGWAREALPRLMAGVAQ--LKVPLVAE 923 >gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] Length = 927 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 114/699 (16%), Positives = 208/699 (29%), Gaps = 173/699 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59 + +D ET S + D ++ +F ++ + K Sbjct: 357 ISLDTETTSTNAI----------DAQLVGLSFAVEEKKAYYVPVPEQANEAQNIVDKFKA 406 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA- 115 EN + V N ++ VL+ N I + + ++A P + + E Sbjct: 407 IYENPNTLKVGQNIKYDLEVLR---NYGIMLQGPLFDTMIAHYLLQPELRHNMDFMAEVY 463 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + ++ LI KG+T + + + Y D +T ++ L Sbjct: 464 LNYETVHID---ALIG--AKGKTQKNMRELAP-------SEVYAYACEDADITLQLKNVL 511 Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E L + + G +D A +Q+ +L+QE+ Sbjct: 512 QPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ- 570 Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 G + +++ LF E + T+T T + VL + + P + Sbjct: 571 AAGKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHIL--- 627 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + P PR H + Sbjct: 628 ----------------------------DYRALKKLLGTYVDALPKLINPRTGHIHTSFN 659 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +SDP+ I +R C I EG + AD + IE RV+A ++ + Sbjct: 660 QAVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G D++ T A+ ++ ++VT+D+R K + Y +A Sbjct: 720 ANMLDAFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGIIYGITVF---GLADRL 776 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + L+ Sbjct: 777 NIERAEAKQLIDGYF--------------------------------------------K 792 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ + + QA E NG RR LP S Sbjct: 793 MFPQVRDYMEQAKETAKANGYVETFFHRRRY---------------LPDINSS------- 830 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 N T R + +Q + DI+ M+ ++L VH Sbjct: 831 -----NATVRGIAERNA-----INAPIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVH 880 Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 DE+ P E ++ M + ++ +PL A+G Sbjct: 881 DELNFSVLPTEKELVERIVMEEMQA--AYPLDVPLVADG 917 >gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92] gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92] Length = 922 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 106/620 (17%), Positives = 195/620 (31%), Gaps = 92/620 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D + Y E ++ +F + HD + + +K LE++ Sbjct: 349 DTETTSLN-YME-AELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETLLEKMKPLLESS 406 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 D V + ++ VL I + +L N + A + K Sbjct: 407 DHKKVGQHLKYDMNVLARY---GIELTGIEFDTMLESYVLNSTATRHDMDSLADRYLGLK 463 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 + +++ + K T + Y D +T + + + SK Sbjct: 464 TIKFEDIAGKGKKQLTFNQI----------ELEQAAPYAAEDADITLRLHQAINAQLSKD 513 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E+ L + I G VD ++ + + +L+++ + G Sbjct: 514 ETLTSVFNDIERPLIPVLSHIERNGALVDASMLGEQSIELAERMVELERQAYDIA-GKEF 572 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF E + + T T + VL P + +R Sbjct: 573 NLASPKQLQQILFEELSIPVIKKTPKGAPSTAEEVLQELALDYPLPKLILEHRSL----- 627 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 S+ P P R H Q +T Sbjct: 628 --------------------------SKLKSTYTDKLPLMINPGTGRIHTSYHQAVTATG 661 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++DP+ I +R IA EG K+V AD + IE R++A ++ +Q L AF Sbjct: 662 RLSSTDPNLQNIPVRTQEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAF 721 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A F V QV+ DQR K + L Y A +A G+ Sbjct: 722 SKGADIHRATAAEVFKVELDQVSDDQRRSAKAINFGLIYGMSAF---GLAKQLGIARKDA 778 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + E + + + ++ A E ++ T R + + +R + Sbjct: 779 AQYI------EHYFETYPGVQHYMDDIRAKAQEQGYVETLFGR-RLYLPEIKARNAMRRQ 831 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVY--RDVGNNRSY 579 + G A KR V + + + + +++ LV+ RD + Sbjct: 832 AAERTAINAPMQGTAADIIKRAMVTVDKWLAESDFDVRMIMQVHDELVFEVRDTQVDSFV 891 Query: 580 LNTTTRQLTREYTYGGKLTE 599 + T L E Sbjct: 892 EAVKDKMATAADLDVPLLVE 911 >gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 943 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 115/680 (16%), Positives = 209/680 (30%), Gaps = 172/680 (25%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVL-----KEALENTD 65 +D + A ++ + H + + + L K LE++ Sbjct: 372 VDTETTSLDALA--AELVGISLSVKPGEACYIPVAHRNGEAQLSRELVLKRMKSWLESSS 429 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKLSSQK 122 V N ++ + N DI + +L + LP + ++ E Sbjct: 430 HLKVGQNLKYD---IHIFANYDIHLEGIAFDTLLESYVLESHLPHNMDSLAERHL----- 481 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 G + I C H+ +D + ++ Y D +T + L P Sbjct: 482 ---GLKTIRYEEVCGKGVHQIGFD------QVDLQIATNYAAEDADITLRLHLELWPQIQ 532 Query: 181 KEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L Y+ + I G +D AL Q V +L+ E+ L G Sbjct: 533 ASPGLLYVYEKIEMPAMLVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEIHRLA-GQ 591 Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + + +++ LF + L + +T + VL + P ++ + R A Sbjct: 592 PFNIQSPKQIAEILFGQLELPIVKKTPSGAPSTDEEVLQKLAEDYPLPARILDYRSLA-- 649 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + P P+ R H Q Sbjct: 650 -----------------------------KLMSTYIEKLPRMADPKTGRIHTNFSQATAV 680 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R I ++G KL+ AD + IE R++A +A ++ L Sbjct: 681 TGRLASSDPNLQNIPVRTEEGRRIREAFIPADGCKLLSADYSQIELRIMAHIAEDENLLT 740 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G+D++ T A F + V +QR KV+ L Y A +A G+ Sbjct: 741 AFKEGKDVHQATAAEIFGIPLDDVNSEQRRYAKVINFGLIYGMSAF---GLAGNLGIERA 797 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + ++ ++M+ E A E+ ++ T R L Sbjct: 798 AAQNYI-----AKYFDRYPGVAQYMERTRLE-ARENGYVETVFGR-------------RL 838 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSY 579 W LP + R G R+ Sbjct: 839 W----------------------------------------LPEIKGSNGPRRQGAERAA 858 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 +N Q + D++ M+ + ++L VHDE+V Sbjct: 859 INAPM------------------QGTAADLIKLAMIAVEDWLEKEQLKTKMLLQVHDELV 900 Query: 634 CETP-DTDEFNASMLYHLMT 652 + P D + + L LM Sbjct: 901 FDVPLDEIDLLQAKLPDLMC 920 >gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843] gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843] Length = 956 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 117/652 (17%), Positives = 214/652 (32%), Gaps = 156/652 (23%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107 ++ + L+ L + D V N+ F+ V ++ I + + ++A P Sbjct: 414 EIVLEKLRPILASDDYPKVFQNAKFDIDV---FYHQGITVKGLVFDTMVASYVLHPELTH 470 Query: 108 ALKAVG-------EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 L+ + +L S + GK IA T Y Sbjct: 471 NLEDLCDRYLTGITSLSYKSLGIPAGK-TIADLDIPTTAN-------------------Y 510 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQ 209 C D T + ++L+ +K L+ L I + G +++ +Q Sbjct: 511 CGLDAYATYLLREKLQAELTKIPPLYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQ 570 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLS 264 ++ + +++ + G + ++L LF L+ + +T T Q VL Sbjct: 571 QLERDLAYIEKNAYE-SIGETFNLSSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLE 629 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + P + +R S+ Sbjct: 630 KLQGDHPLVDYILEHR-------------------------------TLSKLKSTYVDAL 658 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379 P P+ +R H + +Q IT +S+P+ I S +R I G LV A Sbjct: 659 PKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPIRSEFSRRIRQAFIPENGYLLVSA 718 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++ E L+A+ + +D++ T F+ ++T ++R++GK + + Sbjct: 719 DYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFDKR--EITPEERSLGKTINFGV 776 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y GA QK A + L + ++ + + + EN + AI ++ Sbjct: 777 IYGMGA---QKFARESKLTVEQGRKFIEKYH--QRYAQVFEYL----ENSKKQAITQGYV 827 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T R + Y D L Sbjct: 828 ETILGRRR------------------------------------------YFNFDNPLLK 845 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + R L D+ + LN QL R +Q S DI+ M+ + Sbjct: 846 RL----RGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAE 895 Query: 620 AG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V E P + + + M S +PL E Sbjct: 896 VLQNYRARLLLQVHDELVLEVPREEWPSLESKIKTTMEEAVS--LTIPLLVE 945 >gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] Length = 891 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 125/682 (18%), Positives = 212/682 (31%), Gaps = 172/682 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----HDPVMPQV 56 + +D ET DL + L G P + W + + Sbjct: 322 KEICLDTET---TDLRP---------LEAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQ 369 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 LK LEN + HN ++ VL+ N +I + +LA Sbjct: 370 LKPLLENPSIGFYGHNFKYDYHVLR---NHNISVANISFDTILASYLLNSHKRQHSLDHL 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+L + +ELI + L +N A YC DV T + Sbjct: 427 ALELFDKVKIAIQELIGKG-----KNQLNMKN-----VALDKICHYCCEDVDYTIRLKNI 476 Query: 175 LEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L E++L + + G +D A L+Q + E L+Q + Sbjct: 477 LLSQLE-ERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNIY 535 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280 +L G + + ++L LF + G+ T T VL K + P A ++ R Sbjct: 536 ALA-GEIFNLNSPKQLSQILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEYR 594 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + P Q + R H + Sbjct: 595 TLE-------------------------------KLRSTYVNSLPLQVNAKTGRIHCNFN 623 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394 Q + DP+ I +R E + AD + IE R+LA ++ Sbjct: 624 QSMAATGRLSCQDPNLQNIPVRTEVGRQIREAFRPEKEDWSYLSADYSQIELRLLAHLSE 683 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +KAF + ED++ T + F+V QV+ +QR K + L Y A +A Sbjct: 684 DPVLIKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFGLIYGQQAF---GLAHE 740 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ T A + + + +++ Sbjct: 741 LGIDTKTAAAFI-----------------------------------------QRYFERY 759 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDV 573 +V E Q+ +T GKA+ R +LP RS Sbjct: 760 GKVKEFLEACKQSARET---GKAVTMYGRE---------------RLLPEIRSQNAMIRA 801 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 +R +NT +Q D++ M+ K ++L Sbjct: 802 TADRFAVNTP------------------IQGTQADLIKMAMLKINKLLIQEKKKGFMILQ 843 Query: 628 VHDEIVCETPDTDEFNASMLYH 649 +HDE++ E P+ + + S L Sbjct: 844 IHDELIFEVPNQELESISHLVK 865 >gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326] Length = 921 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 114/684 (16%), Positives = 201/684 (29%), Gaps = 162/684 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDSVLKTLKPLLEDPGKIKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 ++ + K T + + A G Y + +T + + E Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT+D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELEGVTQDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVET------------------------------ 810 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 I +R +P + K PS R G R +N Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRK------GAERMAINAPM------- 841 Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 Q + DI+ + M ++A+ ++L VHDE+V E + Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDL---VD 887 Query: 646 MLYHL----MTSNPSWAKGLPLKA 665 + M+ A L ++ Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911 >gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13] gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40] gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] Length = 921 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 110/654 (16%), Positives = 195/654 (29%), Gaps = 155/654 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 ++ + K T + + A G Y + +T + + E Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + L Y A +A G++ V A Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T Sbjct: 787 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 810 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 I +R +P + K PS R+ G R +N Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 841 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA----TKAG--YDIVLTVHDEIVCETPDT 639 Q + DI+ + M+ ++G ++L VHDE+V E + Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVRED 884 >gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491] gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491] Length = 938 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 126/712 (17%), Positives = 217/712 (30%), Gaps = 185/712 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIS------FADVAIGQATEYAAQDADFA 506 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + K Sbjct: 773 -GLAKSLGIDNISA--------------------------------------------KN 787 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G + GR L Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQG-----------------------FVETLFGRRL 824 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----------- 617 D+ N NT R +Q + D++ M++ Sbjct: 825 YLPDIRNK----NTNARAGAERAA-----INAPMQGTASDLIKRAMIDVSRWLSECEASP 875 Query: 618 --TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E +T+ +F L +M +PL AE Sbjct: 876 WDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 927 >gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 921 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 112/684 (16%), Positives = 200/684 (29%), Gaps = 162/684 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 ++ + K T + + A G Y + +T + + E Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + L Y A +A G++ V A Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T Sbjct: 787 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 810 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 I +R +P + K PS R+ G R +N Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 841 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 Q + DI+ + M+ + ++L VHDE+V E + Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VD 887 Query: 646 MLYHL----MTSNPSWAKGLPLKA 665 + M+ A L ++ Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911 >gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] Length = 925 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 112/684 (16%), Positives = 200/684 (29%), Gaps = 162/684 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 351 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 410 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 411 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 470 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 ++ + K T + + A G Y + +T + + E Sbjct: 471 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 520 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 521 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 579 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 580 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 624 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 625 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 673 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 674 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 733 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + L Y A +A G++ V A Sbjct: 734 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 790 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T Sbjct: 791 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 814 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 I +R +P + K PS R+ G R +N Sbjct: 815 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 845 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 Q + DI+ + M+ + ++L VHDE+V E + Sbjct: 846 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VD 891 Query: 646 MLYHL----MTSNPSWAKGLPLKA 665 + M+ A L ++ Sbjct: 892 QISEQIRPHMSGAAELAVPLLVEV 915 >gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091] Length = 921 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 112/684 (16%), Positives = 200/684 (29%), Gaps = 162/684 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 ++ + K T + + A G Y + +T + + E Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + L Y A +A G++ V A Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T Sbjct: 787 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 810 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 I +R +P + K PS R+ G R +N Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 841 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 Q + DI+ + M+ + ++L VHDE+V E + Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VD 887 Query: 646 MLYHL----MTSNPSWAKGLPLKA 665 + M+ A L ++ Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911 >gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 921 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 112/684 (16%), Positives = 200/684 (29%), Gaps = 162/684 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 ++ + K T + + A G Y + +T + + E Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V VT D R K + L Y A +A G++ V A Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T Sbjct: 787 RYP------GVLDYMERTRTQAAEQGFVET------------------------------ 810 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 I +R +P + K PS R+ G R +N Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRN------GAQRMAINAPM------- 841 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 Q + DI+ + M+ + ++L VHDE+V E + Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VD 887 Query: 646 MLYHL----MTSNPSWAKGLPLKA 665 + M+ A L ++ Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911 >gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685] gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685] Length = 930 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 215/690 (31%), Gaps = 162/690 (23%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID + A + ++ + F H P+ L K LEN Sbjct: 355 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGRLKPHLEN 412 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119 + + N +++ V N DI ++ +LA + L L + E L L Sbjct: 413 PALKKIGQNLKYDQHV---FANYDIALNGIAGDSMLASYIIESHLGHGLDELSERWLGLE 469 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171 + E C + A EY D + Sbjct: 470 TITYES-------LCGKGAKQIS------FADVAIGQATEYTAQDADFALRLEAHLRAQM 516 Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+LE E + + + G +D A + + E KL+QE + G Sbjct: 517 DAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 575 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L+ LF + G+ + L +T ++ + Sbjct: 576 FNLNSPKQLQEILFDKMGIPTKGLKKT--------------------------AKGGIST 609 Query: 291 LNTLVEAMNSDGRL-RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++E + D L + LQ ++ P P+ R H Q + Sbjct: 610 NEAVLEQLAPDYALPKIILQNRSLAKLKSTYTDKLPEMIFPKDGRVHTTYAQAVAITGRL 669 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +++P+ I VR A +G +V AD + IE R++A ++G++ + AF+ Sbjct: 670 ASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F +AP V+ +QR K + L Y G +A + G++ + Sbjct: 730 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQY---GLAKSLGIDNLSA-- 784 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 K + +R + + Sbjct: 785 ------------------------------------------KTFIDRYFARYPGVAEYM 802 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTT 583 + EQ G RR L LP R+ G R+ +N Sbjct: 803 QRTKEQAAAQGYVETLFGRR---------------LYLPDIRNKNTNARAGAERAAINAP 847 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETP 637 Q + D++ M ++ +++ VHDE+V E P Sbjct: 848 M------------------QGTASDLIKRAMIDVSRWLDLDGLKTKLIMQVHDELVLEVP 889 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + + L +M +PL AE Sbjct: 890 KAELDLVKEKLPQIMAKVDEGMLNVPLVAE 919 >gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] Length = 914 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 92/588 (15%), Positives = 178/588 (30%), Gaps = 89/588 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D + Y ++ +F HD + VLK LEN Sbjct: 342 DTETTSLD-YL-QAQIVGVSFAVQVGEAAYVPLAHDYLGAPQQLSCDNVLAVLKPLLENP 399 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKLSSQKM 123 + N ++ VL N I + +L + + A + Sbjct: 400 KKRKIGQNLKYDAHVLA---NHGIHLQGMAFDTMLESYVLNSTTKHDMDSLAQIYLQKTT 456 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181 +++ + K + + Y D +T ++ + L Sbjct: 457 ITFEDVAGKGKKQLSFNQI----------PLEHATPYACEDADITLQLHQNLWEQLQNRP 506 Query: 182 ---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + + G +D L H + + +L+Q G + Sbjct: 507 KLERIFDDLEMPLIPVLIRMERHGVKIDATLLHQQSAELATRLQQLEQAAYEEA-GTEFN 565 Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L+T LF + L + +T VL P + R Sbjct: 566 LNSPKQLQTILFDKLSLPVLKKTPKKDPSTAVEVLEELAIDYPLPQLILIYRSL------ 619 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 S+ P Q P+ R H Q +T Sbjct: 620 -------------------------SKLKSTYTDTLPQQINPKTGRVHTSYHQAVTTTGR 654 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R IA +G L+ AD + IE R++A ++ ++ L A Sbjct: 655 LSSTNPNLQNIPIRSAEGRRIRQAFIAPKGYCLLAADYSQIELRIMAHLSEDEKLLSALT 714 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ A F++A +VT +QR K + L Y A +A G+ + Sbjct: 715 AGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVNFGLMYGMQAF---GLAKQLGIERHQAQ 771 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + A + + + M+ + + G + +R Sbjct: 772 IYMDAYFAR--YPGVKAYMDDMRVLAKQQGYVETVFGRRL-----YIPEIKTRHIGRRQA 824 Query: 524 LHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 + G A KR + + +++K ++ +++ LV+ Sbjct: 825 AERTAINAPMQGTAADLIKRAMLTVDDWIEKSGLDVKMLMQVHDELVF 872 >gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] Length = 928 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 118/681 (17%), Positives = 213/681 (31%), Gaps = 166/681 (24%) Query: 27 DVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENTDVTIVAHNSYFE 76 ++ +F ++ HD P+ L K LE+ + V + ++ Sbjct: 364 QAELVGMSFCIEEGEAAYLPLAHDYADAPEQLDRDSVLALFKPLLEDKNKAKVGQHLKYD 423 Query: 77 RTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + VL N DI + +L + + + A +++ + Sbjct: 424 KNVLA---NYDINLQGIAYDTMLESYVLDSVATRHDMDSLAQHYLGLSTVHFEDIAGKGA 480 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRL--EP-----LSSKEQ 183 K T + Y D +T I+K+L P LS E Sbjct: 481 KQLTFNQI----------PLEQAAHYAAEDADITLRLHNHIWKKLNQSPELASVLSEIEV 530 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G +D +Q + +L+ E+ L G + ++L+ L Sbjct: 531 PLATVLAKMEQFGVLIDSQKLGQQSQDLASRILQLENEVHILA-GEEFNLGSTKQLQEIL 589 Query: 244 FLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 F + L + T T + VL P + R+ Sbjct: 590 FKKLDLPVLKKTPKGAPSTSEEVLQELALTYPLPKLLMEFRVL----------------- 632 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 S+ P R R H Q IT +++P+ I Sbjct: 633 --------------SKLKNTYTDKLPKMINQRSGRVHTSYHQAITATGRLSSTEPNLQNI 678 Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 VR I G K+V AD + IE R++A ++ ++ LKAF G+D++ T A Sbjct: 679 PIRTEQGRRVRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLLKAFSQGKDIHTATAA 738 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 FNV+ +VT +QR K + L Y A K + + Sbjct: 739 EVFNVSLEEVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSR------------------ 780 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 +DA+++ E +P + + A Sbjct: 781 -QDAQHYMDLYFERYP----------------------------GVLKYMEDA------- 804 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 ++A+++ V V+ GR L D+ + L R+ Sbjct: 805 --RVVAKEKGYVSTVF--------------GRRLYLPDI--------NASNGLRRKGAER 840 Query: 595 GKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPD-TDEFNASM 646 +Q + DI+ + M+ +++ VHDE++ E + E + + Sbjct: 841 A-AINAPMQGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDELIFEIKEQNVESDKNT 899 Query: 647 LYHLMTSNPSWAKGLPLKAEG 667 + LM S +PL E Sbjct: 900 IVDLMEKAVS--LDVPLIVEA 918 >gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088] gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088] Length = 908 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 92/523 (17%), Positives = 168/523 (32%), Gaps = 77/523 (14%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 LK+ LE+ V + ++ VL N I + + +L + + Sbjct: 384 QLKDLLEDPQYQKVGQHLKYDMHVLA---NYGIALRGFAGDTMLESYVLDSVGGRHDMDS 440 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + ++ +++ + K T + + Y D +T ++++ Sbjct: 441 LAERYLGRRTISFEDVAGKGAKQLTFNQV----------SLEQAVPYACEDADITWQLYE 490 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L + E L + Q+I G V + + ++ +L+ E Sbjct: 491 YLTNQLTATESLHTVYTDIELPLAPVLQSIERNGALVSREILQQQSSVIGARLIELEAEA 550 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + ++L LF E L + T T + VL P + Sbjct: 551 HDLA-GRPFNLGSTKQLGEILFDELKLPIIKKTPKGAPSTGEEVLVELALDYPLPKVLLE 609 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + G ++ P PR R H Sbjct: 610 -------------------------------YRGLAKLKSTYTDKLPTLINPRTGRIHTS 638 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T +SDP+ I +R IA E +V AD + IE R++A ++ Sbjct: 639 YHQAVTATGRLSSSDPNLQNIPIRSVEGRAIRKAFIAPENHVIVAADYSQIELRIMAHLS 698 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ L AF G D++ T A F VA +VT DQR K + L Y A +A Sbjct: 699 GDAGLLTAFNEGLDVHAATAAEVFGVALDEVTSDQRRSAKAINFGLIYGMSAF---GLAK 755 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + T ++ +M + A E ++ T R + + Sbjct: 756 QLHIGRAESQAYIDT-----YFQRYPGVLDYMDRT-RQGAHERGYVETIFGR-RLYLPEI 808 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++R + G A K+ + + +D + Sbjct: 809 NARNKMRVQAAERTAINAPMQGSAADIIKKAMLAVDRFLRDSS 851 >gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS] gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS] Length = 937 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 113/691 (16%), Positives = 212/691 (30%), Gaps = 167/691 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63 ID + + ++ +F + H+ +P LK LEN Sbjct: 365 IDTETTSLDEMV--AQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLAKLKPWLEN 422 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + + ++R V N I + + T++ + + A + + Sbjct: 423 PEKKKLGQHIKYDRHV---FANHGIEVEGYAHDTMLQSYVLEVHKPHGLASLAERHLGRS 479 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 ++L + + + EY D T ++ + L P Sbjct: 480 GISYEDLCGKGAHQISFSQV----------DIAKAAEYSCEDSDQTLDVHRTLWPQLEAN 529 Query: 183 QELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++L ++ Q + G +D A + + L+QE + G + Sbjct: 530 EKLRFVYQLEMDSSEALYRVERNGVMIDSATLAAQSHELGTRIMALEQEAYEIA-GQPFN 588 Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 +++ F + GL + +T + VL + P ++ +R Sbjct: 589 LGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHR-------- 640 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF-PPQNLPRPSRSHEELDQIITHLP 347 G S+ N PR R H Q + Sbjct: 641 -----------------------GLSKLKGTYTDKLGQLAN-PRTGRVHTHYAQAVAVTG 676 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++DP+ I VR +A G + AD + IE R++A ++G++ L+AF Sbjct: 677 RLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESLLRAF 736 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ T A F P QV+ +QR KV+ L Y + +A G+ Sbjct: 737 TEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAA 793 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A ++ A + + A E ++ T R R ++ Sbjct: 794 ASYIERYFARYP------GVKAYMDETKALAKEQGYVETVFGR-----RLYLPEINS--- 839 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 P+G R G R+ +N Sbjct: 840 ----------------------------------------PNG----PRRGGAERAAINA 855 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 Q + D++ M+ K +++ VHDE+V E Sbjct: 856 PM------------------QGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEV 897 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 P+ + E+ + + LM A +PL AE Sbjct: 898 PEAEVEWVRAEIPRLMAGVA--ALKVPLLAE 926 >gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13] gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13] Length = 914 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 122/699 (17%), Positives = 217/699 (31%), Gaps = 174/699 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----HDPVMP-----Q 55 ID ET + +D+ + ++ + + +P Sbjct: 341 IDTET-TSLDVM---------NAKLVGISLSIEPGHAAYIPLAHHSMEQSEQLPLQSVLD 390 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 LK LEN V N ++ VL N I + TL+ + Sbjct: 391 KLKPWLENPKKHKVGQNLKYDSHVLA---NYGIRLQGIVHDTLLESYVLESHRRHDMDSL 447 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K ++ C + +D A + Y D VT ++ + Sbjct: 448 SERFLDYKPVSYTDI----CGKGASQIGFD------EIAIDVATHYAAEDADVTLQLHQS 497 Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E + Q + G +DV + ++ + V+ L + Sbjct: 498 MWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRELGVKMDSLQENAY 557 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 +T G + ++L LF + L + T + T + VL + P + Sbjct: 558 -VTAGQPFNLNSPKQLGELLFDKLKLPMIKKTPSGAPSTSEEVLEKLAEDFPLPKIIL-- 614 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G S+ P P R H Sbjct: 615 -----------------------------DYRGMSKLKTTYTDKLPRMVNPETGRVHTNY 645 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IAS G K++ AD + IE R++A ++ Sbjct: 646 AQAVAVTGRLASNDPNLQNIPIRSEEGRRIREAFIASPGNKIISADYSQIELRIMAHLSD 705 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + LKAF G+D++ T + F++ P +VT DQR KV+ L Y A AS Sbjct: 706 DASLLKAFHDGQDVHRATASEIFDITPLEVTSDQRRYAKVINFGLIYGMSAFGV---ASN 762 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ DA+N+ E +P + + ++ R Sbjct: 763 LGISRT----------------DAKNYIDRYFERYP-------GVARYMDETRQLAR--- 796 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 Q + +T+ GR L ++ Sbjct: 797 ----------EQGYVETVF-------------------------------GRRLWLPEIN 815 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628 + N RQ +Q + DI+ M+ K +++ V Sbjct: 816 SP----NGPRRQAAERAA-----INAPMQGTAADIIKLSMIAVQDWLEKEKLDSKLIMQV 866 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 HDE+V + P+ + L LM +PL AE Sbjct: 867 HDELVLDVPEKELVLVREKLPELMAQVA--RLKVPLIAE 903 >gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305] gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305] Length = 950 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 103/634 (16%), Positives = 194/634 (30%), Gaps = 144/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGE 114 LK LEN ++ + N ++ TV N I + +L + + Sbjct: 427 QLKPILENPEIKKIGQNIKYDLTV---FANHGINVQGVAFDTMLESYTLNSTGRHNMDDL 483 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K E + + + T + + + VT ++ + Sbjct: 484 SDRYLGHKTIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDAD----------VTMKLHQV 533 Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L E L + I G +D A + ++ +L+QE+ Sbjct: 534 LWSQLVQEPTLVKLFDEIELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVH 593 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 S G V + ++L+ LF + GL + T +V Sbjct: 594 SEA-GSVFNLASTKQLQEILFEKLGLPILKKTPKGAASTNE----------EVLEELAMM 642 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 L ++ G S+ P + R H Q + Sbjct: 643 GHRVPKLL----------------IEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYHQAV 686 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +SDP+ I +R IA +G K+V AD + IE R++A +A ++ Sbjct: 687 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHLANDEGM 746 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 LKAF G+D++ +T + F V +VT +QR K + L Y +++ G++ Sbjct: 747 LKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEF---GLSNQLGIS 803 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 DA+ + ++ V Sbjct: 804 R----------------ADAKQYMEAYF-------------------------NRYPNVL 822 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ + + + +R +P + R R Sbjct: 823 QFMTDIK--AKAAEKGYVETLLGRRLYLPEIKSSN---------------AMRRKAAERV 865 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIV 633 +N Q + DI+ M+ + +++ VHDE+V Sbjct: 866 AINAPM------------------QGTAADIIKIAMIGIDRIIQHSDEIKMIMQVHDELV 907 Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E D E ++++ M +PL AE Sbjct: 908 FEVREDKVEHYSALIKAEMEKAIQ--LSVPLIAE 939 >gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b] gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b] Length = 993 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 110/651 (16%), Positives = 191/651 (29%), Gaps = 142/651 (21%) Query: 46 DCVHDPVMPQ----------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D + P LK LE V +A N ++ VL C PI + Sbjct: 446 DLLGGGEPPPAQIPFDDAIARLKPLLEARSVLKIAQNMKYDLLVLACCGVDVAPIEDTML 505 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAW 154 S L + + + C R+ R Sbjct: 506 ISYALDSGRNNHGLDELAKKH-------------LGHECIPFAAVAGSGRSFIGFARVPL 552 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALA 204 EY D V +++ L+P + E + + + RG +D + Sbjct: 553 DKATEYAAEDADVALRLWRVLKPRLAAEHMTSVYETLERPMVGVLAAMERRGVAIDRNIL 612 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 L+ + +L+ E+ L G + ++L LF GL T T + Sbjct: 613 SRLSGEFAQDMARLEAEIYDLA-GESFNLGSPKQLGDILFGRMGLPGAKKTATGAWSTSA 671 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 S + ++ F R L + S+ Sbjct: 672 SVLEDLAESGNTFAAR--------------------------ILDWRQLSKLKSTYTDAL 705 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379 P +R H T +S+P+ I +R +A G L+ A Sbjct: 706 PGFVNKATNRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVAEPGHALISA 765 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA +A +AF G D++ T + F V + D R K + + Sbjct: 766 DYSQIELRLLAHIADIPQLRQAFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINFGI 825 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A +A+ G+ A +K +E +M Sbjct: 826 IYGISAF---GLANQLGIPREEAAAYIK-----RYFERFPGIRDYM-------------- 863 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 ++ K+ R Q TI Sbjct: 864 ----DKTKRLVR-------------EQGVVTTIF-------------------------- 880 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 GR + +G++ + + G + I +A++R + + Sbjct: 881 -----GRKCHFPRIGSSNASERAFFERAAINAPIQGAAADIIRRAMAR---MDAALATAG 932 Query: 620 AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGL--PLKAEG 667 +++ VHDE+V E P + E +++ +M P A L PL+ E Sbjct: 933 CSARMLMQVHDELVFEAPLEETETTIAVVKRVMEEAPHPAATLTVPLQVEA 983 >gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304] Length = 937 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 126/712 (17%), Positives = 217/712 (30%), Gaps = 185/712 (25%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 352 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQLDLQD 401 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K LEN + + N +++ V N I ++ +LA + L L Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 458 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 459 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 505 Query: 169 REI---------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + K+LE E + + + G +D A + + E KL+ Sbjct: 506 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 565 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 566 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 624 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 625 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 653 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 654 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 713 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F +AP V+ +QR K + L Y G Sbjct: 714 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY-- 771 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + K Sbjct: 772 -GLAKSLGIDNISA--------------------------------------------KN 786 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G + GR L Sbjct: 787 FIDRYFARYPGVAEYMQRTKEQAAAQG-----------------------FVETLFGRRL 823 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----------- 617 D+ N NT R +Q + D++ M++ Sbjct: 824 YLPDIRNK----NTNARAGAERAA-----INAPMQGTASDLIKRAMIDVSRWLSECEASP 874 Query: 618 --TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 WDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 926 >gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114] gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114] Length = 935 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 120/697 (17%), Positives = 210/697 (30%), Gaps = 171/697 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQV---------LKEALEN 63 ID + A + ++ + F H P+ LK LEN Sbjct: 355 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQIDLQDVLGRLKPHLEN 412 Query: 64 TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-L 116 + + + N +++ V N I ++ +LA + L L + E L Sbjct: 413 SALKKIGQNLKYDQHVFANYGIALN-GIALNGIAGDAMLASYIIESHLGHGLDELSERWL 471 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----- 171 L + E C + A EY D + Sbjct: 472 GLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFALRLEAHLR 518 Query: 172 ----FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K+LE E + + + G +D A + + E KL+QE + Sbjct: 519 AQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AA 577 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + G+ + L +T T + VL P + NR Sbjct: 578 GQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 637 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A + P P+ R H Q Sbjct: 638 LA-------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQ 666 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +++P+ I VR A +G +V AD + IE R++A ++G++ Sbjct: 667 AVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDK 726 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF+ GED++ T A F +AP V+ +QR K + L Y G +A + G Sbjct: 727 TLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY---GLAKSLG 783 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + K + +R Sbjct: 784 IDNISA--------------------------------------------KNFIDRYFAR 799 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + EQ G + GR L D+ N Sbjct: 800 YPGVAEYMQRTKEQAAAQG-----------------------FVETLFGRRLYLPDIHNK 836 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 N R +Q + D++ M++ +++ VHD Sbjct: 837 ----NANARAGAERAA-----INAPMQGTASDLIKRAMIDVSCWLDSDGLKTKLIMQVHD 887 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E P+ + + L +M +PL AE Sbjct: 888 ELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 924 >gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101] Length = 1020 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 116/712 (16%), Positives = 213/712 (29%), Gaps = 173/712 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL---------------WDCVHD 50 +D ET S ++ + + P +L D + Sbjct: 420 LDTETTSLNPFR----------AELVGVGVAWGEGPADLAYIPIGHRVGSSGETPDLLSP 469 Query: 51 P--VMP-QVLKEALE----NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 P +P + AL + N+ ++R +L +P+ + +LA Sbjct: 470 PPAQLPLDQVLTALAPWLGSAQHPKALQNAKYDRLIL---LRHGLPLEGVVMDTLLADY- 525 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 L+ L L ++ L + YC Sbjct: 526 -----LRDANAKHGLELLAQRNFGFL------PTSYSELVPKGADFSAVPIEQAALYCGM 574 Query: 164 DVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211 DV VTR + L + E L + + G +D A L+ + Sbjct: 575 DVHVTRRLAPLLRAQLEELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYLAELSSEL 634 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSN 266 +L+ + ++ G + ++L LF GL + +T T VL Sbjct: 635 GQTLQRLEADAKA-AAGTDFNLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDAAVLEKL 693 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + P V +R S+ P Sbjct: 694 EDAHPVVSLVLEHR-------------------------------TLSKLKSTYVDALPA 722 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H + +Q +T +S+P+ I S +R + G +L+ AD Sbjct: 723 LMEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPEAGWQLISADY 782 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA ++GE+ ++A++ G+D++ T + +V+ D+R +GK + + Y Sbjct: 783 SQIELRILAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIY 840 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 GA Q+ A TG++ + + + + F E A+ ++ T Sbjct: 841 GMGA---QRFARETGVSQTQAKEFL--SKYKQRYPKVFAFL----ELQERLALSRGYVET 891 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 R + D + L Sbjct: 892 ILGRRRP------------------------------------------FAFDPSGLGRH 909 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 L ++ + + Q R +Q S DI+ M+ Sbjct: 910 LGKD----PLEIDLDIARRGGMEAQQLRAAANAP------IQGSSADIIKLAMVQLHHQL 959 Query: 622 ------YDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V E P+ E ++ M +PL E Sbjct: 960 AASGLPARLLLQVHDELVLEAAPEALEAVRTLTRETMERAVE--LSVPLLVE 1009 >gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI polymerase 1 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis] Length = 833 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 104/546 (19%), Positives = 178/546 (32%), Gaps = 140/546 (25%) Query: 149 NHREAWRL-----FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTIND 194 H E F E ++ +F+ L P E+ L + + Sbjct: 387 THPEGVARRYGGEFTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 RG +DV L L+ ++ E +L+ E+ L G + ++L+ LF E GL Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGLTPVGR 505 Query: 255 TETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 TE T +R L + + P + Q Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELIL-------------------------------Q 534 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCV 364 + S+ P PR R H +Q T +SDP+ I + + Sbjct: 535 YRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRI 594 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R +A EG L+ AD + IE RVLA ++G++ + F G+D++ T A F + PA V Sbjct: 595 RKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALV 654 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 R K + + Y A +++ G++ +++AE F Sbjct: 655 DPKMRRAAKTVNFGVLYGMSA---HRLSQELGID----------------YKEAEAFIER 695 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 ++ P+ +AW ++ + + +RR Sbjct: 696 YFQSFPK---------------VRAWIERTLEEGRTRGYVE------------TLFGRRR 728 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 VP + + R N VQ Sbjct: 729 YVPDLASRVRS---------------VREAAERMAFNMP------------------VQG 755 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 + D++ M G ++L VHDE+V E P+ A L + N ++ Sbjct: 756 TAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLD 814 Query: 661 LPLKAE 666 +PL+ E Sbjct: 815 VPLEVE 820 >gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110] gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110] Length = 940 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 118/695 (16%), Positives = 213/695 (30%), Gaps = 175/695 (25%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63 ID + + ++ +F + H+ +P LK LEN Sbjct: 368 IDTETTSLDEMV--ARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLPFDEVLARLKPWLEN 425 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAVGEALKLSS 120 + + ++R V N I + + T++ + P L ++ E Sbjct: 426 PAKKKLGQHIKYDRHV---FANHGIEVQGYAHDTMLQSYVLEAHRPHGLASLAERHL--- 479 Query: 121 QKMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 G+ I+ C H+ P + EY D T ++ L P Sbjct: 480 -----GRSGISYEDLCGKGAHQI------PFSQVDIAKAAEYSCEDSDQTLDVHLALWPQ 528 Query: 179 SSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++++L ++ Q + G +D + + L+QE + G Sbjct: 529 IERDEKLRFIYQLEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQEAYEIA-G 587 Query: 229 LVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + GL + +T + VL + P ++ +R Sbjct: 588 QPFNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHR---- 643 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF-PPQNLPRPSRSHEELDQII 343 G S+ N PR R H Q + Sbjct: 644 ---------------------------GLSKLKGTYTDKLGQLAN-PRTGRVHTHYAQAV 675 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I VR IA G + AD + IE R++A ++G++ Sbjct: 676 AVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAPPGSVIASADYSQIELRIMAHISGDESL 735 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF G D++ T A F P QV+ +QR KV+ L Y + +A G+ Sbjct: 736 LRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIYGMSSF---GLARNLGIE 792 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A + A + + A E ++ T R R ++ Sbjct: 793 TKAAASYIDRYFARYP------GVKAYMDETKALAKEKGYVETVFGR-----RLYLPEIN 841 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 P+G R G R+ Sbjct: 842 S-------------------------------------------PNG----PRRGGAERA 854 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 +N Q + D++ M+ K +++ VHDE+ Sbjct: 855 AINAPM------------------QGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDEL 896 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 V E P+ + E+ + + LM +PL AE Sbjct: 897 VFEVPEAEIEWVRTEIPRLMAGVAE--LKVPLLAE 929 >gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] Length = 921 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 118/684 (17%), Positives = 203/684 (29%), Gaps = 162/684 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIGGDQAHGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPVNFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177 ++ + K T + + A G Y + +T + + L+P Sbjct: 467 DIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFETRLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 LS E L + I +G VD L + + + T L+ E ++ G + Sbjct: 517 VLSDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALECEAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLSELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRVHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELEGVTNDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVET------------------------------ 810 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 I +R +P + K PS R G R +N Sbjct: 811 -------IFGRRLYLPDINAKN---------PSLRK------GAERMAINAPM------- 841 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA----TKAG--YDIVLTVHDEIVCETPDTDEFNAS 645 Q + DI+ + M+ ++G ++L VHDE+V E + Sbjct: 842 -----------QGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VE 887 Query: 646 MLYHL----MTSNPSWAKGLPLKA 665 + M+ A L ++ Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEV 911 >gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] Length = 976 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 113/686 (16%), Positives = 208/686 (30%), Gaps = 152/686 (22%) Query: 5 FIDFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59 +D ET S PID GI + LF + + + + +V ++ Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEETDDLFYIPLGHQTKK--ETTNQLSIEEVFSKIRT 441 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 +E+ NS F+R + FN + + +LA Sbjct: 442 WIEDPKKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN-----------NQE 487 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----------- 168 + E + F K + + +NK YC DV +T Sbjct: 488 KHGLSEISFRLFGF-KPPSFKETVGKNKDFSFVDIDEASVYCGYDVFLTFKIVKIFKERF 546 Query: 169 -REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E + ++ E L + + G +D+ L++ + ++ ++ L Sbjct: 547 SMEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAE 606 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + L + +T T VL Sbjct: 607 G-NFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEI---------- 655 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++ S+ P + R H +Q Sbjct: 656 ---------------------IQYLIKHRTLSKLLSTYIDALPNLINEKTGRVHTNFNQA 694 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 T +S+P+ I S +R + + KL+ AD + IE R+LA +A E+ Sbjct: 695 ATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEI 754 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF +D++ T F +++ D+R +GK + + Y G +K A +TG+ Sbjct: 755 LINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGV 809 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + E + F E A+ ++ T R ++ Sbjct: 810 STPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE--------- 854 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 K DKN L ++ Sbjct: 855 ---------------------------------FKFDKNGLGRLIGKDPY---------- 871 Query: 578 SYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 + R L +Q S DI+ M+ K ++L V Sbjct: 872 ---EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQINKKFIEMNVPAKMLLQV 928 Query: 629 HDEIVCET-PDTDEFNASMLYHLMTS 653 HDE++ E PD+ E ++ M Sbjct: 929 HDELLFEVEPDSLEITTKLVKKTMED 954 >gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145] gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145] Length = 924 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 85/523 (16%), Positives = 165/523 (31%), Gaps = 85/523 (16%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D + Y E ++ +F + HD + +VLK LE++ Sbjct: 348 DTETTSLN-YME-AQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDWLLKVLKPLLEDS 405 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + V N ++ +L+ I + +LA N + S +L+ + K Sbjct: 406 SIAKVGQNLKYDAHILRRY---GIKLRGIKNDTMLASYVFNSVGSRHDMDTLSLQYLNHK 462 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 + +E+ + K T + Y D +T + L Sbjct: 463 PIKFEEIAGKGAKQLTFNQI----------ELAQAAPYAAEDADITLRLHHILWDKVHQT 512 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L+ E L + + + G VD + ++ + + +L+Q+ + G Sbjct: 513 GEQLASVLTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKLDELEQKAFEIA-GEE 571 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L+ LF + L + T T + VL P + +R A Sbjct: 572 FNLGSPKQLQQILFEKLELPVIKKTPKGAPSTAEEVLQELAHDYPLPDVILQHRSLA--- 628 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + P P R H Q + Sbjct: 629 ----------------------------KLKSTYTDKLPRMINPDTGRVHTSYQQAVAAT 660 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I VR +A EG +V D + IE R++A ++ + L+A Sbjct: 661 GRLSSTEPNLQNIPIRTPEGRRVRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDASLLRA 720 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T + F + +VT +QR K + L Y A + L++ Sbjct: 721 FAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNFGLIYGMSAFGLSRQ-----LDIPR 775 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + E + + +E + G Sbjct: 776 HEAQAYMDKYFERFPGVLEYMENTRETAKKQGYVSTLFGRRLP 818 Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 12/76 (15%) Query: 603 QAVSRDILAEGMMNA----TKAGY----DIVLTVHDEIVCET-PDTDEFNASMLYHLMTS 653 Q + DI+ M+ + G +++ VHDE+V E + E A L +M Sbjct: 843 QGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQVHDELVFEIRTEHAESYAKALADVMGE 902 Query: 654 NPSWAKGLPLKAE-GY 668 +PL AE G+ Sbjct: 903 AAD--LDVPLLAEYGF 916 >gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205] Length = 985 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 115/700 (16%), Positives = 211/700 (30%), Gaps = 160/700 (22%) Query: 12 SPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-----------VLK 58 SP+ D + + ++ + +G + H + L Sbjct: 390 SPVALDTETTSLNPFQAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPLDQVLGALA 449 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L + N+ ++R +L +P+ + +LA L+ L Sbjct: 450 PWLSSAAHPKTLQNAKYDRLIL---LRHGLPLAGVVMDTLLADY------LRDANAKHGL 500 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 L ++ L + YC DV VT + L Sbjct: 501 ELLAQRNFGFL------PTSYSELVPKGANFSAVPMAQAALYCGMDVHVTYRLTPLLRGQ 554 Query: 176 -----EPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 EPL++ E L + + G +D L++ + +L+ + + Sbjct: 555 LEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGELSRELKATLERLESDAKE-A 613 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF GL + +T T VL + P V +R Sbjct: 614 AGTDFNLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDATVLEKLEDAHPVVPLVLEHR- 672 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ P R H + +Q Sbjct: 673 ------------------------------TLSKLKSTYVDALPALMEAETGRVHTDFNQ 702 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +S+P+ I S +R + G L+ AD + IE R+LA ++GE+ Sbjct: 703 AVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEAGWTLISADYSQIELRILAHLSGEE 762 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KA+++G+D++ T F+ +VT D+R +GK + + Y G Q+ A TG Sbjct: 763 VLVKAYQSGDDVHALTARLLFDK--DEVTSDERRLGKTINFGVIYGMGV---QRFARETG 817 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + F E A+ ++ T R + Sbjct: 818 VSQAEAKEFL--SKYKQRYPKVFAFL----ELQERLALSRGYVETILGRRRP-------- 863 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 D + L L Sbjct: 864 ----------------------------------FAFDPSGLGRHL-------------G 876 Query: 577 RSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 + L R +L +Q S DI+ M+ + ++L Sbjct: 877 KDPLEIELEVARRGGMEAQQLRAAANAPIQGSSADIIKLAMVQLQQRLTESALPARLLLQ 936 Query: 628 VHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P+ E ++ M + +PL E Sbjct: 937 VHDELVLEAAPEALETVLNLTRETMERAVT--LSVPLVVE 974 >gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96] gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96] Length = 930 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 104/593 (17%), Positives = 187/593 (31%), Gaps = 98/593 (16%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D + Y+ ++ +F HD + + L+ LEN Sbjct: 357 DTETTSLD-YS-KAQIVGVSFAVTPGKAAYVPLAHDYPGVPDQLDRSEILEKLRPLLENP 414 Query: 65 DVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 + N ++ VL D + ++ + N A + +G Sbjct: 415 RKAKLGQNLKYDTHVLANHGIALRGIAHDTMLESYVLNSTATKHNMDDLAKEYLGVETIH 474 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----- 173 +G + I + Y D +T ++ + Sbjct: 475 YEDVAGKGAKQIG-----------------FQEVSIDQAAPYAAEDADITLQLHQVLNAK 517 Query: 174 ------RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 LE S E L + I + G +D A+ + + + L+Q L Sbjct: 518 LAQHPRLLELYSDMEVPLISVLARIENNGVLIDAAMLAQQSLELSSQIISLEQHAHDLA- 576 Query: 228 GLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++++ L+ + L + +T + VL P + R Sbjct: 577 GQTFNLGSPKQIQDILYDQQKLPVLKKTPKGQPSTEESVLQELALDYPLPKLILEYRSL- 635 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S+ P Q + R H Q I Sbjct: 636 ------------------------------SKLKSTYTDKLPQQIDGQTGRIHTSYHQAI 665 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +SDP+ I +R IA EGKK+V AD + IE R++A ++ ++ Sbjct: 666 AATGRLSSSDPNLQNIPIRSEEGRKIRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGL 725 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 LKAF +D++ T A F VAP QVT D R K + L Y + +A GL+ Sbjct: 726 LKAFSEEQDVHRATAAEVFGVAPEQVTTDLRRSAKAINFGLIYGMSSF---GLAQQLGLS 782 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + A + + E A E +I T R + + +SR + Sbjct: 783 RSQAQSYIDLYFARYP------GVKNYMDRIREQAREQGYIETLFGR-RLYLPEINSRNA 835 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVY 570 + G A KR + ++ K++ + +++ LV+ Sbjct: 836 ARRQYAERTAINAPMQGTAADIIKRAMIAADQWLYKEQPDAKMIMQVHDELVF 888 >gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 696 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 170 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 226 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 227 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 269 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 270 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 329 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 330 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 388 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 389 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 417 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 418 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 477 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 478 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 535 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 536 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 574 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 575 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 602 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 603 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 644 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 645 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 686 >gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] Length = 931 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 98/601 (16%), Positives = 203/601 (33%), Gaps = 88/601 (14%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68 +D GI ++ +F F ++ + + + K A EN D Sbjct: 362 SLDTETTGIDPI--TAELVGMSFSFAENQAFYVPVPANREEALTIVNIFKPAFENPDSLK 419 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124 + N ++ +L N + + + ++A P + + E LK + K+E Sbjct: 420 IGQNIKYDLIMLA---NYGVTLKGKMFDTMIAHYVLQPELRHGMDYLAEIYLKYETIKIE 476 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------- 177 ELI KG+ + D +Y D VT ++ + LE Sbjct: 477 ---ELIG--AKGKKQGNMRDLAP-------EAVYKYACEDADVTLKLKQVLENELETNGV 524 Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G +D ++ ++++E+ L G+ + Sbjct: 525 KKLFEEIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHQLA-GMEFNIA 583 Query: 235 CLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ LF + T+T T + VL S + ++ +R Sbjct: 584 SPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR--------- 634 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G + P P R H +Q +T Sbjct: 635 ----------------------GLKKLLGTYIDALPQLINPATGRIHTSFNQTVTATGRL 672 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +S+P+ I +R I EG + AD + IE R++A ++ + ++AF+ Sbjct: 673 SSSNPNLQNIPIRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIEAFQK 732 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +D++ T A+ + V +VT++QR+ K + Y +A ++ Sbjct: 733 DQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGIIYGISVF---GLAERLNVDRKEAKA 789 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 L+ +E+ N +M ++ E A E +I T +R K+ +S+ + + Sbjct: 790 LIDG-----YFENYPNVKAYMDQSIQE-AREKGYIETIFKR-KRYLPDINSKNAVVRGYA 842 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTT 583 + G A K + + +++ ++L L + + + + Sbjct: 843 ERNAINAPIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELNFSVLPEEKEKVQQI 902 Query: 584 T 584 Sbjct: 903 V 903 >gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970] gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970] Length = 939 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 122/702 (17%), Positives = 208/702 (29%), Gaps = 179/702 (25%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID + A + ++ + F H P+ L K LEN Sbjct: 357 IDTETTSLD--AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQYVLDRLKPHLEN 414 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAV-GEALKLS 119 + + + N +++ V N I ++ + +LA + L L + G L L Sbjct: 415 SALKKIGQNLKYDQHV---FANYGIALNGIVGDAMLASYIIESHLGHGLDELSGRWLGLE 471 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171 + E C + A EY D + Sbjct: 472 TITYES-------LCGKGAKQIG------FADVAIGPATEYAAQDADFALRLEAHLRAQM 518 Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+LE E + + + G +D A + + E KL+QE + G Sbjct: 519 DDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYA-AAGQP 577 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + G+ + L +T T + VL P + NR A Sbjct: 578 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSLA- 636 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P PR R H Q + Sbjct: 637 ------------------------------KLKSTYTDKLPEMISPRDKRVHTTYAQAVA 666 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++P+ I VR A G +V AD + IE R++A ++G++ + Sbjct: 667 ITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ GED++ T A F +AP V+ +QR K + L Y G K L+ Sbjct: 727 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 786 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 K + +R Sbjct: 787 -----------------------------------------------KNFIDRYFARYPG 799 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRS 578 + + +A E G RR L LP R R+ Sbjct: 800 VAEYMQRARECAAGQGYVETLFGRR---------------LYLPDIRHTNANIRARAERA 844 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------------AGYDIV 625 +N Q + D++ M++ ++ ++ Sbjct: 845 AINAPM------------------QGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLI 886 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P+ + + L +M + +PL AE Sbjct: 887 MQVHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLAAE 928 >gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] Length = 942 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 103/592 (17%), Positives = 194/592 (32%), Gaps = 93/592 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEAL 61 D ET S L ++ AF ++ H PV V+ + L+ Sbjct: 374 DTETTSLDPLE----------AELVGIAFSWEAHKGFYLPVPEGREAAGEVL-EELRPFF 422 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120 E+ + V N ++ VL IP+ + +LA P A + Sbjct: 423 ESDTIEKVGQNLKYDIKVLSTY---GIPVRGPLFDTMLAHYLINPDMRHNMDVLAETYLN 479 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 +LI + K L R+ P + EY D +T ++ + P Sbjct: 480 YTPVPISDLIGKKGK----NQLSMRDVPLEDQ-----TEYAVEDADITLQLAQLFGPELR 530 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E L + + G +D L+ ++ + L ++ G Sbjct: 531 EAQTEELFKEIEIPLLRVLADMELEGINLDTGFLEKLSGELEKDIEGLVGKIYE-AAGEE 589 Query: 231 SSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + L T T T + VLS K V Sbjct: 590 FNIGSPKQLGEILFDKMKLVDKPKKTRTGQYSTAEDVLSGLAKEHEIVQMVL-------- 641 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + G ++ P Q P R H + Q + Sbjct: 642 -----------------------DYRGLTKLKSTYVDALPQQVAPSTGRVHTDYMQTVAA 678 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I +R I S +L+ AD + IE R++A ++ E + Sbjct: 679 TGRLSSNNPNLQNIPIRTERGRQIRKAFIPRSPEYQLLAADYSQIELRIIAALSEEDTMI 738 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 ++F+ GED++ T A+ F V +VT++QR+ K + + Y A +++ T L+ Sbjct: 739 ESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTNLSR 795 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 L+ T + + N+ + EH +G ++ + + + Sbjct: 796 TEAKELIDTYY--KTYPKLRNYISDQIDFAREHGYVQTVLGR-----RRYLKDINGSNAV 848 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 + + G A K + + ++ N ++L LV+ Sbjct: 849 VRGAAERNAVNAPIQGSAADIIKIAMIRIYQKLREGNFKTRMLLQVHDELVF 900 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 22/150 (14%) Query: 528 FEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 ++ I+ + R + + ++ + +L R L + + N R Sbjct: 798 AKELIDTYYKTYPKLRNYISDQIDFAREHGYVQTVLGRRRYL------KDINGSNAVVRG 851 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD 640 +Q + DI+ M+ + ++L VHDE+V + + Sbjct: 852 AAERNA-----VNAPIQGSAADIIKIAMIRIYQKLREGNFKTRMLLQVHDELVFDCYRGE 906 Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAE-GY 668 +++ M S A +PL + G+ Sbjct: 907 ADTVSALIKSEMESAYELA--VPLVVDMGF 934 >gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 688 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 196/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + +A N ++ V++ I + T++++ P + Sbjct: 162 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 218 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK + Y D VT Sbjct: 219 ERWLGHTPIAYKDVAGSGKSAV-----------------TFDMVDIDRATAYAAEDADVT 261 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 262 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAY 321 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL P Sbjct: 322 EDEIYALA-GEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLP 380 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P+ Sbjct: 381 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPQTK 409 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KL+ AD + IE RV Sbjct: 410 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRV 469 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 470 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 527 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 528 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 566 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 567 ----------------EHGYVETIFGRRAHYPDIRASN----------------PQVRAF 594 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 595 ------NERAAINAPIQ---------GAAADIIRRAMIR---MEDALAKENLAARMLLQV 636 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E P+ + E ++ +M + A L PL+ + Sbjct: 637 HDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDA 678 >gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1] Length = 833 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 102/533 (19%), Positives = 176/533 (33%), Gaps = 135/533 (25%) Query: 157 FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTL 207 F E ++ +F+ L P E+ L + + RG +DV L L Sbjct: 400 FTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEAL 459 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----V 262 + ++ E +L+ E+ L G + ++L+ LF E GL TE T +R Sbjct: 460 SFELEKEMERLEGEVFRLA-GHPFNLNSRDQLEKVLFDELGLTPVGRTEKTGKRSTAQGA 518 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + P + Q+ S+ Sbjct: 519 LEALRGAHPIVELIL-------------------------------QYRELSKLKSTYLD 547 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377 P PR R H +Q T +SDP+ I + +R +A EG L+ Sbjct: 548 PLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLL 607 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA ++G++ + F G+D++ T A F + PA V R K + Sbjct: 608 AADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNF 667 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y A +++ G++ +++AE F ++ P+ Sbjct: 668 GVLYGMSA---HRLSQELGID----------------YKEAEAFIERYFQSFPK------ 702 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +AW ++ + + +RR VP + + Sbjct: 703 ---------VRAWIERTLEEGRTRGYVE------------TLFGRRRYVPDLASRVRS-- 739 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM--- 614 R N VQ + D++ M Sbjct: 740 -------------VREAAERMAFNMP------------------VQGTAADLMKIAMVKL 768 Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 G ++L VHDE+V E P+ A L + N ++ +PL+ E Sbjct: 769 FPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLDVPLEVE 820 >gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1] Length = 833 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 102/533 (19%), Positives = 176/533 (33%), Gaps = 135/533 (25%) Query: 157 FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTL 207 F E ++ +F+ L P E+ L + + RG +DV L L Sbjct: 400 FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEAL 459 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----V 262 + ++ E +L+ E+ L G + ++L+ LF E GL TE T +R Sbjct: 460 SFELEKEMERLEGEIFRLA-GHPFNLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQGA 518 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + P + Q+ S+ Sbjct: 519 LEALRGAHPIVELIL-------------------------------QYRELSKLKSTYLD 547 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377 P PR R H +Q T +SDP+ I + +R +A EG L+ Sbjct: 548 PLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLL 607 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA ++G++ + F G+D++ T A F + PA V R K + Sbjct: 608 AADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNF 667 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y A +++ G++ +++AE F ++ P+ Sbjct: 668 GVLYGMSA---HRLSQELGID----------------YKEAEAFIERYFQSFPK------ 702 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +AW ++ + + +RR VP + + Sbjct: 703 ---------VRAWIERTLEEGRTRGYVE------------TLFGRRRYVPDLASRVRS-- 739 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM--- 614 R N VQ + D++ M Sbjct: 740 -------------VREAAERMAFNMP------------------VQGTAADLMKIAMVKL 768 Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 G ++L VHDE+V E P+ A L + N ++ +PL+ E Sbjct: 769 FPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLDVPLEVE 820 >gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301] gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301] Length = 964 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 120/670 (17%), Positives = 224/670 (33%), Gaps = 156/670 (23%) Query: 36 GFDDHPVEL--WDCVH--DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 + + P +L H +P L+ LE+ N+ F+R +L+ Sbjct: 401 AWGEEPDQLAYIPLGHEEGEQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRHQ--- 457 Query: 87 DIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECL 142 I + + +LA P +L A+ + LKL + ++ L Sbjct: 458 GIELAGVVFDTMLASYLLNPSLGHSLDALADRWLKLQT----------------RSYSDL 501 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQT 191 + K + A +YC DV V + + L+ L + E L + Sbjct: 502 VPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAE 561 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + DRG +D L++ + E +L+ +L G + ++L LF + GL++ Sbjct: 562 MEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLA-GDRFNLGSPKQLSELLFEKLGLNV 620 Query: 252 EDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + +T T VL + P + + A + ++ L + +DG Sbjct: 621 KKSRKTKTGYSTDAAVLEKLQGDHPIIDLILEHCTLAKLKSTY-VDALPSLVAADG---- 675 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 R H + +Q +T +S+P+ I S Sbjct: 676 ---------------------------RIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFS 708 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + EG L AD + IE R+LA ++ E L+A+ G+D++ T + F+ Sbjct: 709 RQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR-- 766 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 ++T ++R IGK++ + Y GA Q+ A TG + + + + + Sbjct: 767 EEITSEERRIGKIINFGVIYGMGA---QRFARETGSSTKEAQGFIDRFY--DRYPRVFTY 821 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + + AI ++ T R + Sbjct: 822 LQ----SLERQAIARGYVETVLGRRR---------------------------------- 843 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 Y + L R + ++ + QL R Sbjct: 844 --------YFDFEDTG----LQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAP------ 885 Query: 602 VQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPS 656 +Q S DI+ M+ ++L VHDE+V E P + + + + M Sbjct: 886 IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQAVQ 945 Query: 657 WAKGLPLKAE 666 +PL E Sbjct: 946 --LTVPLAVE 953 >gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22] gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A] gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22] Length = 949 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 90/605 (14%), Positives = 184/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ D + + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGAVVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D +T ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADITLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + ++++E+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPLLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + + + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43] gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43] Length = 980 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 105/635 (16%), Positives = 189/635 (29%), Gaps = 138/635 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE V + N ++ V+ +I I + T++L+ Sbjct: 452 DELKALLEEPAVLKIGQNLKYDMLVMAQH---NIEIKSFDDTMLLSYVLDAGQG------ 502 Query: 115 ALKLSSQKMEE---GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E G + I + P + A Y D VT + Sbjct: 503 --GHGMDALSERWLGHKTIGY----KDVTGSGKSAIPFAQVAIDKATAYAAEDAEVTLRL 556 Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L+ E + L + + RG VD + L+ + L+ E Sbjct: 557 WHALKVRLVSEGMTSVYERLERPLAPVLMRMEQRGIRVDRQILSRLSGELAQGAAALEAE 616 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 ++ L G + ++L LF + L T+T + + A Sbjct: 617 IQELA-GENFNVGSPKQLGEILFDKMSLPGGSKTKTGQWSTSAQALEDLAAAGHELP--- 672 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R + + ++ P P R H Sbjct: 673 -----------------------RKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSFAM 709 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T +SDP+ I +R+ +A G L+ AD + IE RVLA +A Sbjct: 710 AATTTGRLSSSDPNIQNIPVRTAEGRKIRTAFVAEPGNVLISADYSQIELRVLAHVANIP 769 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF G D++ T + F V + + R K + + Y A +A+ Sbjct: 770 QLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAF---GLANQLS 826 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + R+ R Sbjct: 827 IERSEAGDYI--------------------------------------------RKYFER 842 Query: 517 VSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + + + ENG I +R P + P R+ N Sbjct: 843 FPGIKDYMDATKAEAKENGYVTTIFGRRAHYPEIRSSN---------PQVRAF------N 887 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ +N + G + I +A+ R E + A ++L VHDE++ E Sbjct: 888 ERAAINAPIQ---------GSAADIIRRAMVR---MEPALEAAGMQARMLLQVHDELIFE 935 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGL--PLKAEG 667 T + D ++ +M + A + PL+ + Sbjct: 936 TAEADADKIIPVIVEVMENAAMPAIDMAVPLQVDA 970 >gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] Length = 926 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 108/582 (18%), Positives = 186/582 (31%), Gaps = 101/582 (17%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMP 54 + +D ET S +T ++ + F H + Sbjct: 352 RQIGLDTETNSLDPMT----------AKLVGISMAFAAGDAVYIPVAHTLAEQLDWQEIS 401 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKA 111 LK LE+ ++ + N +++ + K N I + +LA + L L Sbjct: 402 GSLKPFLEDKNLAKIGQNLKYDQHIFK---NHGIDLQGIAGDAMLASYIVESHLSHNLDD 458 Query: 112 VGEA-LKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + L L + E C KG D N EY D Sbjct: 459 LAMRWLGLETISYES-------LCGKGAKQISFADVNV-------AQATEYACQDADFAL 504 Query: 170 EIFKRL---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 I + L E + E + + + G +D A + + E +L+Q Sbjct: 505 RIEQHLRTQMDAQQIEIYENMELPVAQVLFQMERAGVHLDCAELAQQSTELGTELLQLEQ 564 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAI 274 + L G + ++L+ LF + G+ + + +T T + VL P Sbjct: 565 QAYDLA-GQPFNLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDESVLEKLADDYPLPK 623 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + NR A + P P+ R Sbjct: 624 LILQNRSLA-------------------------------KLKSTYTDKLPEMINPQTGR 652 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q + +++P+ I VR A +G +V AD + IE R++ Sbjct: 653 VHTNYAQAVAITGRLASNNPNLQNIPIRTKQGRRVRRAFNAPDGYLIVSADYSQIELRIM 712 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++G+ AF+ ED++ T A F VAP ++T +QR K + L Y G Sbjct: 713 AHLSGDATLQAAFQNNEDVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMGEY--- 769 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A + G++ + A +K A + EHA + F+ T R K Sbjct: 770 GLAKSLGIDNVSAAMFIKRYFARYT------GVAEYMQRTKEHAQQFGFVETLFGR-KLY 822 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 HS + +A G A K+ + + Sbjct: 823 LPDIHSNHAMKRAGAERAAINAPMQGTASDLIKKAMIDVSKF 864 >gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC3046] Length = 976 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 113/692 (16%), Positives = 204/692 (29%), Gaps = 164/692 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----------PVM 53 +D ET S + AE V + L G ++ + H + Sbjct: 384 SLDTETNSLNPIN-------AELVGIGL-CLGEENDDLFYIPLGHQTKKGTSNQLSIEDV 435 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 L+ +E+ NS F+R + FN + + +LA Sbjct: 436 FSKLRNWIEDPKKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN-------- 484 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + E + F K + +NK YC DV +T +I K Sbjct: 485 ---NQEKHGLSEISFRLFGF-KPPLFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVK 540 Query: 174 RLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + E L + + G +D+ L++ + ++ + Sbjct: 541 IFKESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESK 600 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQV 276 + L G + ++L LF + L + +T T VL + Sbjct: 601 VYELA-GENFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHL 659 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ P + R H Sbjct: 660 IKHR-------------------------------TLSKLLSTYIDALPNLINEKTGRVH 688 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 +Q T +S+P+ I S +R + + KL+ AD + IE R+LA Sbjct: 689 TNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAH 748 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A E+ + AF +D++ T F +++ ++R +GK + + Y G +K Sbjct: 749 LADEEILINAFHKNDDIHSLTARLIF--EKEEISSEERRVGKTINFGVIYGMG---IKKF 803 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A +TG++ + E + F E A+ ++ T R ++ Sbjct: 804 ARSTGVSTPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE--- 854 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 K DKN L ++ Sbjct: 855 ---------------------------------------FKFDKNGLGRLIGKDPY---- 871 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------Y 622 + R L +Q S DI+ M+ K Sbjct: 872 ---------EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNIPA 922 Query: 623 DIVLTVHDEIVCET-PDTDEFNASMLYHLMTS 653 ++L VHDE++ E PD+ E ++ M Sbjct: 923 KMLLQVHDELLFEVEPDSLEITTKLVKKTMED 954 >gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis] Length = 931 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 124/702 (17%), Positives = 221/702 (31%), Gaps = 181/702 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 +D ET S +D A ++ +F H P P L Sbjct: 359 LDTET-SALD---------AMRAQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLEQVLA 408 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAV 112 K LE+ + + ++R V N I + + T++ + P L ++ Sbjct: 409 RLKPWLEDARHAKLGQHIKYDRHV---FANHGIEVRGYVHDTMLQSYVLEVHKPHNLASL 465 Query: 113 GEALKLSSQKMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 E G+ + C H+ P + + Y D T E Sbjct: 466 AERH--------TGRTGLNYEDLCGKGVHQI------PFAQVSVDKAATYACEDSDQTLE 511 Query: 171 IFKRLEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + L PL + L + L+ + G +D AL + + +L+ Sbjct: 512 VHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSHALGQRILRLET 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 E + G + ++L F + G+ + T T T + VL P ++ Sbjct: 572 EAYEIA-GQPFNLNSPKQLGEIFFDKLGMPVVRKTTTGARSTNEEVLEKLAADYPLPARL 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 +R S+ LPR R H Sbjct: 631 LEHRSL-------------------------------SKLKSTYTDKLGLLALPRTGRVH 659 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q + +SDP+ I +R +A G+ + AD + IE R++A Sbjct: 660 THYAQAVAVTGRLSSSDPNLQNIPVRTPEGRRIREAFVAPPGRVIASADYSQIELRIMAH 719 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G+ L AF G D++ T A F V ++V+ +QR KV+ L Y + + Sbjct: 720 ISGDPSLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVINFGLIYGMSSF---GL 776 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A GL+ A+N+ + E +P V++ Sbjct: 777 AKNLGLDRQA----------------AKNYIQRYFERYP--------------GVRQYME 806 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + +R L + +T+ + LMLP S Sbjct: 807 ETKARAKSL------GYVETVFGRR-----------------------LMLPEINSPNGP 837 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIV 625 +Q + D++ + M ++A K ++ Sbjct: 838 RRAAAERAA-----------------INAPMQGTAADLIKKAMVAVQARLDAEKPEILMI 880 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P+ ++ + + LM A +PL AE Sbjct: 881 MQVHDELVFELPENAVDWLRAEVPRLMAGVA--ALRVPLLAE 920 >gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366] gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366] Length = 939 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 93/587 (15%), Positives = 191/587 (32%), Gaps = 71/587 (12%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVA 70 D G A ++ +F + + + + LEN ++ + Sbjct: 371 DTETTGTD--ANLAELVGLSFSIKPGEGYYIPVPAEMEAAQQIVEEFRPVLENENIVKIG 428 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N ++ +LK I + + +LA P + LS + I Sbjct: 429 QNIKYDMLILKWY---GISVKGRLFDTMLAHYLIDPDTRHNMD---VLSENYLNYSPISI 482 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181 + R+ P +Y D +T ++ EPL + Sbjct: 483 TTLIGPKGKSQGTMRDVPV-----EKVVDYAAEDADITLQLANVFEPLLKQLNAEKLATE 537 Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L Y+ I G +D+ ++ ++++ K +Q + G+ + ++L Sbjct: 538 VENPLIYVLADIEKEGVRIDMDTLINYSKELELDIRKFEQSVYDKC-GIKFNLASPKQLG 596 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 LF + +L P+A + + + +L L + + Sbjct: 597 EVLFDKL--------------------QLDPKAKKTKTGQYQTGEDVLLALAHKSDIVQD 636 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 L F + P P+ R H +Q + +++P+ I Sbjct: 637 ------ILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSFNQAVAATGRLSSNNPNLQNIP 690 Query: 361 -----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 VR I E L+ AD + IE R++A ++ E+ L AF+ G D++ T A Sbjct: 691 IRTERGREVRKAFIPRDENHILLSADYSQIELRIIADISKEENMLDAFKNGIDIHTATAA 750 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 R + +A +VT QR K + + Y A + G+ A +++ + Sbjct: 751 RVYGIAIEEVTPTQRRNAKAVNFGIIYGQSAFGLSQ---NLGIPRKEAAEIIE--QYFTQ 805 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + + E+ F+ T R ++ R +S + + Sbjct: 806 YPGIKRYMSDTMNFARENG----FVETILGR-RRYLRDINSANQTVRGFAERNAINAPIQ 860 Query: 535 GKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580 G A K + + +D+ + + LV+ + + + Sbjct: 861 GSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVFDVLKSEVEAM 907 >gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] Length = 937 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 112/689 (16%), Positives = 203/689 (29%), Gaps = 166/689 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMP---------QVLKEALENT 64 D G+ + +I +F HD P LK LEN Sbjct: 347 DTETDGLDII--NANLIGLSFAITPGEAAYLPLAHDYSDAPIQLDRTLVLDKLKPLLENP 404 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V N F++++L C I + +L N + + + K Sbjct: 405 QKQKVGQNLKFDKSILARC---GIVLQGIAFDTMLESYILNTVAGRHDMDSLSQRYLQHK 461 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 +E+ + T + A Y D +T + L P + Sbjct: 462 TITFEEIAGKGKSQLTFNQI----------ALEQAAPYAAEDADITLRLHHCLWPQLQQS 511 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + I G +D A+ +Q + T+L+++ L Sbjct: 512 KALSWIFTHIEMPLLSVLSRIESTGVLIDRAVLAQHSQELTTRLTELEEQAHLLA-EEPF 570 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+T L+ + L + T T + VL+ P A + R Sbjct: 571 NLASPKQLQTILYEKQQLPVLKKTPKGAPSTDEEVLAELALDYPLAKVLLEYR------- 623 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G ++ P P R H Q +T Sbjct: 624 ------------------------GLAKLKTTYTDKLPSMINPTSGRVHTSYHQAVTVTG 659 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + +P+ I +R IA G +++ AD + IE R++A ++ + +KAF Sbjct: 660 RLSSREPNLQNIPIRSEEGRRIRQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIKAF 719 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +D++ T A FNV+ T +QR K + L G++ Sbjct: 720 TADKDIHRATAAEVFNVSVETATDEQRRSAKAINFGLI--------------YGMSAFGL 765 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + +A+++ +P + N Sbjct: 766 ARQLGIARV-----EAQHYIDLYFARYP----------------------------GVAN 792 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + +Q G SGR L D+ Sbjct: 793 YMEAIRKQAATQGYVTTL-----------------------SGRRLYLPDI--------N 821 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEIVCETP 637 + + R+ + +Q + DI+ M+ +++ VHDE+V E Sbjct: 822 ASSAMRRKAAER-EAINAPMQGTAADIIKSAMIEIDAWLQHQPLVRMIMQVHDELVFEVH 880 Query: 638 DT-DEFNASMLYHLMTSNPSWAKGLPLKA 665 ++ + + HLM K +PL Sbjct: 881 ESVVQGAVEKIRHLMEQTTE--KSMPLTV 907 >gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] Length = 952 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 96/596 (16%), Positives = 186/596 (31%), Gaps = 95/596 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59 L ID ET + ++ +F ++ + + L+ Sbjct: 381 LSIDTETTGTEPME----------AELVGMSFSDAENRAYYVPVPANRDEALKIVNELRP 430 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEAL 116 EN + V N ++ VL+ N + + + +LA P + + E Sbjct: 431 LYENENSMKVGQNIKYDMIVLQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEI- 486 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ELI R+ P Y D VT ++ LE Sbjct: 487 -YLQYQTIHIDELIG----ARGKNQKNMRDLPAED-----VYRYACEDADVTLKLKNVLE 536 Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L + I G +D ++ + ++++E+ +L Sbjct: 537 KELKEQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYALA 596 Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ LF + T+T T + VL S + ++ Sbjct: 597 GGETFNIASPKQVGEVLFDRLKIVDKAKKTKTGQYVTSEEVLESLRSKHAIIGKILE--- 653 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + G + P PR R H +Q Sbjct: 654 ----------------------------YRGLKKLLSTYIDALPQLINPRTGRIHTSFNQ 685 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +S+P+ I +R I +G + AD + IE R++A ++ ++ Sbjct: 686 AVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDK 745 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF +G D++ T A+ + V VT D R K + Y +A Sbjct: 746 NMIDAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVF---GLAERMN 802 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + L+ + + + + + A E+ ++ T R K+ +SR Sbjct: 803 VPRQEAKELIDG------YFETYPQVKEYMDRSIQVARENGYVETIFHR-KRFLPDINSR 855 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570 + + + G A K + L+ + NNL ++L L + Sbjct: 856 NAVVRGYAERNAINAPIQGSAADIIK-VAMSLICQRLQSNNLKAKMILQVHDELNF 910 >gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703] gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703] Length = 938 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 120/701 (17%), Positives = 208/701 (29%), Gaps = 177/701 (25%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID + A + ++ + F H P+ L K LEN Sbjct: 356 IDTETTSLD--AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGRLKPHLEN 413 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA-LKLS 119 + + N +++ V N DI ++ +LA + L L + E L L Sbjct: 414 PALKKIGQNLKYDQHV---FANYDIALNGIAGDSMLASYIIESHLGHGLDELSERWLGLE 470 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171 + E C + A EY D + Sbjct: 471 TITYES-------LCGKGAKQIS------FADVAIVQATEYAAQDADFALRLEAHLRAQM 517 Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+LE E + + + G +D A + + E KL+QE + G Sbjct: 518 DDKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQP 576 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + G+ + L +T T + VL P + NR A Sbjct: 577 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA- 635 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P P+ R H Q + Sbjct: 636 ------------------------------KLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I VR A +G +V AD + IE R++A ++G++ + Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ GED++ T A F AP V+ +QR K + L Y G +A + ++ Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY---GLAKSLSIDN 782 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + +R Sbjct: 783 ISA--------------------------------------------KNFIDRYFARYPG 798 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + EQ G + GR L D+ N Sbjct: 799 VAEYMQRTKEQAAAQG-----------------------FVETLFGRRLYLPDIHNK--- 832 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------------TKAGYDIVL 626 N R +Q + D++ M++ +++ Sbjct: 833 -NANARAGAERAA-----INAPMQGTASDLIKRAMIDVSCWLSECEASPWDDLLQSKLIM 886 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P+ + + L +M +PL AE Sbjct: 887 QVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAE 927 >gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] Length = 949 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 89/605 (14%), Positives = 184/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET + D ++ +F ++ D + + Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGAVVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D +T ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADITLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + ++++E+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPLLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + + + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2] Length = 833 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 102/533 (19%), Positives = 176/533 (33%), Gaps = 135/533 (25%) Query: 157 FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTL 207 F E ++ +F+ L P E+ L + + RG +DV L L Sbjct: 400 FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEAL 459 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----V 262 + ++ E +L+ E+ L G + ++L+ LF E GL TE T +R Sbjct: 460 SFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQGA 518 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + P + Q+ S+ Sbjct: 519 LEALRGAHPIVELIL-------------------------------QYRELSKLKSTYLD 547 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377 P PR R H +Q T +SDP+ I + +R +A EG L+ Sbjct: 548 PLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLL 607 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA ++G++ + F G+D++ T A F + PA V R K + Sbjct: 608 AADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNF 667 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y A +++ G++ +++AE F ++ P+ Sbjct: 668 GVLYGMSA---HRLSQELGID----------------YKEAEAFIERYFQSFPK------ 702 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +AW ++ + + +RR VP + + Sbjct: 703 ---------VRAWIERTLEEGRTRGYVE------------TLFGRRRYVPDLASRVRS-- 739 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM--- 614 R N VQ + D++ M Sbjct: 740 -------------VREAAERMAFNMP------------------VQGTAADLMKIAMVKL 768 Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 G ++L VHDE+V E P+ A L + N ++ +PL+ E Sbjct: 769 FPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLDVPLEVE 820 >gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493] gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493] Length = 902 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 P +L + + LK LE+ + TI+ N ++ VL + I + Sbjct: 365 GAPAQL----DKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417 Query: 99 LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 LA S+ ALK + M + +++ + K + + Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205 Y D VT ++ +L PL KE L + + RG VD A+ Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQ 527 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261 + + L+Q+ L G + ++L+T L+ E L + +T + Sbjct: 528 AQSIELGGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL P + +R ++ Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P Q P R H +Q +T +++P+ I +R IA G ++ Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 676 VAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y + + G+ + + + A Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAKEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R + H+ + +A G A D+ + M K + Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 L +N V+A Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E + D E + M A +PL + Sbjct: 849 ------HLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891 >gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis] Length = 833 Score = 270 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 176/534 (32%), Gaps = 137/534 (25%) Query: 157 FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTL 207 F E ++ +F+ L P E+ L + + RG +DV L L Sbjct: 400 FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEAL 459 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----V 262 + ++ E +L+ E+ L G + ++L+ LF E GL TE T +R Sbjct: 460 SFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQGA 518 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + P + Q+ S+ Sbjct: 519 LEALRGAHPIVELIL-------------------------------QYRELSKLKSTYLD 547 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377 P PR R H +Q T +SDP+ I + +R +A EG L+ Sbjct: 548 PLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLL 607 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA ++G++ + F G+D++ T A F + PA V R K + Sbjct: 608 AADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNF 667 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y A +++ G++ +++AE F ++ P+ Sbjct: 668 GVLYGMSA---HRLSQELGID----------------YKEAEAFIERYFQSFPK------ 702 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +AW ++ + + +RR VP + + Sbjct: 703 ---------VRAWIERTLEEGRTRGYVE------------TLFGRRRYVPDLASRVRS-- 739 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM--- 614 R N VQ + D++ M Sbjct: 740 -------------VREAAERMAFNMP------------------VQGTAADLMKIAMVKL 768 Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 G ++L VHDE+V E P+ A L +M + + +PL+ E Sbjct: 769 FPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENT--YPLDVPLEVE 820 >gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H] gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H] Length = 936 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 94/590 (15%), Positives = 183/590 (31%), Gaps = 91/590 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D + Y ++ +F + HD P+ L K LE+ Sbjct: 362 DTETTSVH-YM-KAELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWVLAQLKPLLESK 419 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 + + N ++ VL DI + ++ N + + ALK + Sbjct: 420 TIKKIGQNLKYDANVLSHY---DIALQGIEFDTMIESYCYNSVATRHNMDALALKYLDYQ 476 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 +++ + K T + G Y D +T + + P Sbjct: 477 TVHFEDVAGKGAKQLTFNQI----------DIEKAGHYAAEDADITLRLHHAIFPALAET 526 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + E L + + G +D + + + +L+ E +L G Sbjct: 527 ASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILAEQSFTLGQRLDELEIEAHNLA-GKSF 585 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF + + + T T + VL P + NR Sbjct: 586 NLASPKQLQQILFEDLKIPVIKKTPKGAPSTAEEVLQELALDYPLPKVILENR------- 638 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G S+ P + +R H Q +T Sbjct: 639 ------------------------GLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAVTATG 674 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++DP+ I +R IA + K+V D + IE R++A ++ ++ + AF Sbjct: 675 RLSSTDPNLQNIPIRSEQGRKIRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKGLVTAF 734 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T A F V +VT DQR K + L Y A +A + Sbjct: 735 SEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSAF---GLAKQLHIGRQQA 791 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 E+ + A E ++ T R + +++ Sbjct: 792 QEYQDKYFQRYP------GVLTYMEDTRQQASEQGYVETLYGR-RLYLPDINAKNGMRKK 844 Query: 523 ELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +A G A II + V ++++ + + + + L++ Sbjct: 845 AAERAAINAPMQGTAADIIKKAMLAVDSWLLEQNDDRIKMTMQVHDELIF 894 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 19/111 (17%) Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD- 623 GR L D+ + R+ +Q + DI+ + M+ + Sbjct: 827 GRRLYLPDI---------NAKNGMRKKAAERAAINAPMQGTAADIIKKAMLAVDSWLLEQ 877 Query: 624 ------IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + VHDE++ E D E + L LM +PL AE Sbjct: 878 NDDRIKMTMQVHDELIFEIHQDIVEETTAKLVTLMNDAVE--LSVPLIAEA 926 >gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus] Length = 924 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 121/694 (17%), Positives = 217/694 (31%), Gaps = 166/694 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLK 58 L ID ET S A ++ AF ++ P L D + + L Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L V N ++ VL + +P + T+V A + Sbjct: 405 PILRRAQ-RKVGQNLKYDLVVLARH-GVQVPPP-YFDTMVAHYLIAPEEPHNLDVLARQY 461 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 +M ELI G + + D + G Y D + ++ L Sbjct: 462 LRYQMVSITELIG---SGRDQKSMRD-------VSIDEVGPYACEDTDIALQLADVLAAE 511 Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + E L + + G C+D A+ + + ++ E +L+ ++ + G Sbjct: 512 LDRHGLRHIAEEMEFPLIEVLADMERTGICIDRAVLREIGKQLEAELHELEVKIYEVA-G 570 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + + ++L LF + GL T T T + VL P + + R A Sbjct: 571 VEFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRHLA- 629 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P P R H +Q +T Sbjct: 630 ------------------------------KLKSTYVDGLEPLIHPETGRIHTTFNQTVT 659 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I +R + G KL+ AD IE R+LA ++G++ Sbjct: 660 ATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T AR F V P QVT +QR K++ + Y A + + Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCS---- 775 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + +++ V+ Sbjct: 776 ----------------------------------------TREAQELIEEYQRAFPGVTR 795 Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 LH+ E+ + G + +RR VP + + + RS+ R Sbjct: 796 ---YLHRVVEEARQKGYVETLLGRRRYVPNINSRNR---------AERSMAERI------ 837 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEI 632 +Q D++ M+ + GY ++L VHDE+ Sbjct: 838 ------------------AVNMPIQGTQADMIKLAMVHIYHRLKREGYRAKMLLQVHDEL 879 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 V E P + L +G+P++ + Sbjct: 880 VFEMPPEEVEPVRQLVEQEMKQALPLEGVPIEVD 913 >gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331] gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331] Length = 902 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 P +L + + LK LE+ + TI+ N ++ VL + I + Sbjct: 365 GAPAQL----DKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417 Query: 99 LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 LA S+ ALK + M + +++ + K + + Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205 Y D VT ++ +L PL KE L + + RG VD A+ Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQ 527 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261 + + L+Q+ L G + ++L+T L+ E L + +T + Sbjct: 528 AQSLELGGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL P + +R ++ Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P Q P R H +Q +T +++P+ I +R IA G ++ Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 676 VAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y + + G+ + + + A Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAQEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R + H+ + +A G A D+ + M K + Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 L +N V+A Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E + D E + M A +PL + Sbjct: 849 ------HLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891 >gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] Length = 930 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 89/605 (14%), Positives = 182/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ + + Sbjct: 358 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPANQEETLKIVNEF 407 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN V N ++ VL+ N + + + ++A P + + E Sbjct: 408 RPVFENESSLKVGQNIKYDMIVLQ---NYGVEVKGPLFDTMIAHYVLQPELRHGMDYLAE 464 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D VT ++ Sbjct: 465 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLAPKD-----VYRYACEDADVTLKLKN 512 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + ++++E+ Sbjct: 513 VLEKELKENGTERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTEQMERIEKEIY 572 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 573 DLA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 632 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 660 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 661 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 720 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + +V D R K + Y +A Sbjct: 721 EDKNMIDAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANFGIIYGISVF---GLAE 777 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L+ + + + + A E ++ T R K+ Sbjct: 778 RMNVERKEAKELIDG------YFETYPGVKAYMDQSIRVAQEKGYVETIFHR-KRFLPDI 830 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 831 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHDELNFSV 890 Query: 573 VGNNR 577 + + Sbjct: 891 PIDEK 895 >gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl polymerase 1 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus] Length = 831 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 105/536 (19%), Positives = 181/536 (33%), Gaps = 141/536 (26%) Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHT 206 E + +F+ L+ E+ L +L + + G +DVA Sbjct: 398 TEDAGERALLAERLFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQA 457 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261 L+ V+ E +L++E+ L G + ++L+ LF E GL TE T +R Sbjct: 458 LSLEVEAEVRQLEEEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 516 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + ++ P ++ Q+ ++ Sbjct: 517 VLEALREAHPIVDRIL-------------------------------QYRELTKLKNTYI 545 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376 P P+ R H +Q T +SDP+ I + +R +A EG L Sbjct: 546 DPLPALVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWVL 605 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 VV D + IE RVLA ++G++ ++ F+ G D++ T + F V+P V R K + Sbjct: 606 VVLDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLMRRAAKTIN 665 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A S +E+A F +++P+ Sbjct: 666 FGVLYGMSAHRLSGELSI-------------------PYEEAVAFIERYFQSYPK----- 701 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK- 555 +AW + G R+R V ++ ++ Sbjct: 702 ----------VRAWIE----------------------GTLEEGRRRGYVETLFGRRRYV 729 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM- 614 +L + S R R N VQ + D++ M Sbjct: 730 PDLNARVKSVREAA------ERMAFNMP------------------VQGTAADLMKLAMV 765 Query: 615 ---MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + G ++L VHDE+V E P D E A++ +M W +PL+ E Sbjct: 766 RLFPRLQELGARMLLQVHDELVLEAPKDRAERVAALAKEVMEGV--WPLQVPLEVE 819 >gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76] Length = 916 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 124/713 (17%), Positives = 218/713 (30%), Gaps = 187/713 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 331 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 380 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K L N + + N +++ V N I ++ +LA + L L Sbjct: 381 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 437 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 438 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 484 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 485 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 544 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 545 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 603 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 604 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 632 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 633 RVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRI 692 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 693 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQY-- 750 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 751 -GLAKSLGIDNLSAKNFID----------------------------------------- 768 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 769 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 810 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------- 617 G R+ +N Q + D++ M++ Sbjct: 811 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSECEAS 852 Query: 618 ---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E +T+ +F L +M +PL AE Sbjct: 853 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 905 >gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2] gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2] Length = 1013 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 114/635 (17%), Positives = 197/635 (31%), Gaps = 142/635 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115 LK LE DV +A N+ F++ VL I + TL+L+ A Sbjct: 487 LKPMLEAPDVLKIAQNAKFDQLVLAQ---RGIRLAPVDDTLLLSYVLDAGRTDHGMDVLA 543 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K + + + G T R A EY D VT +++ L Sbjct: 544 EKYFGHRPIQFGAVAG---SGRTFIG-------FARVALDKATEYSAEDADVTLRLWRVL 593 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ + + RG +D A+ L+ + +L+ + L Sbjct: 594 KPRLAAERMSAVYETLERPMVETLARMERRGVSIDRAILSRLSGEFAQDMARLEAVIFEL 653 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280 G + ++L LF + GL T T T VL + P A ++ + R Sbjct: 654 A-GESFNLGSPKQLGDILFGKMGLAGARKTATGAWSTAAGVLDDLAEQGVPLAARILDWR 712 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ P P R H Sbjct: 713 QL-------------------------------SKLKSTYTDALPSYVNPETGRVHTSYA 741 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T +S+P+ I +R IA G+KL+ AD + IE R+LA +A Sbjct: 742 LAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFIAPPGRKLISADYSQIELRLLAHIADI 801 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 AF D++ T + F V + + R K + + Y A +A+ Sbjct: 802 SQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKAINFGIIYGISAF---GLANQL 858 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + +K + + R + + A E+ ++ T Sbjct: 859 AIPREEAGAYIK------RYFERFPGIRAYMDATKQFARENGYVTTIFG----------- 901 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ P + PS R+ N Sbjct: 902 --------------------------RKCHYPRITASN---------PSERAF------N 920 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ +N + G + I +A+ R + + ++L VHDE+V E Sbjct: 921 ERAAINAPIQ---------GSAADIIRRAMVR---MDEALEKAGLSAQMLLQVHDELVFE 968 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 PD + + ++ +M P L PL+ + Sbjct: 969 APDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDA 1003 >gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424] gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 939 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 108/640 (16%), Positives = 195/640 (30%), Gaps = 154/640 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + ++ LE+ + N ++ V + + T++ + Sbjct: 415 ERMRAWLEDASRPKLGQNLKYDIHVFANH-GIKLR-GVAHDTMLQSYVLASHRNHGMDSL 472 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A +L S K +E+ C + +D + EY D VT + +R Sbjct: 473 AERLLSLKTITYEEV----CGKGASQIGFD------QIDLARATEYAAEDADVTLRLHRR 522 Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P E + + Q + G +D + + L+Q Sbjct: 523 MFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRMLALEQSAY 582 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 G + +++ LF + L + T +T + VL + P + Sbjct: 583 E-AAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL-- 639 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G S+ P PR R H Sbjct: 640 -----------------------------DYRGLSKLKSTYTDKLPKMVNPRTGRVHTSY 670 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +++P+ I +R IA G +V AD + IE R++A ++G Sbjct: 671 GQATAVTGRLASTEPNLQNIPVRTDEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISG 730 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L+AF GED++ T A F V V+ +QR KV+ L Y A +AS Sbjct: 731 DENLLRAFANGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAF---GLASN 787 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + A ++ +P + E ++ R Sbjct: 788 LGIERDA----------------ARHYIDRYFMRYP-------GVAHYMEETRQTAR--- 821 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDV 573 Q + +T+ + L LP R Sbjct: 822 ----------EQGYVETVFGRR-----------------------LWLPDINGGSGPRRQ 848 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDI--VLT 627 R+ +N Q + D++ M+ + G ++ Sbjct: 849 AAERAAINAPM------------------QGTAADLIKLSMIAVQDWLERDGLQTRQIMQ 890 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P+ + E + L LM + +PL AE Sbjct: 891 VHDELVLEVPEHELELVKARLPELMCTVAE--LRVPLVAE 928 >gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45] gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45] Length = 935 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 105/654 (16%), Positives = 192/654 (29%), Gaps = 157/654 (24%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D + + MP +LK LE+ V + N ++ + I I T++++ Sbjct: 397 DELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY---GIGITPIDDTMLMS 453 Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 +G + + S K L+ + +DR + Sbjct: 454 YAMHGGLHGHGMDTLSERYLSHTPIPIKSLLGSG----KSQITFDR------VPVEDAVK 503 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++ +P + E+ L + + G VD ++ Sbjct: 504 YAAEDADITLRLWTIFKPQLHQDRVTRVYEGLERPLVPVLAEMEMAGVQVDRDTLSRMSN 563 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + +L+ E+ L G + ++L LF + GL +T T VL Sbjct: 564 AFSQKMAQLEAEIHELA-GESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLED 622 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ Sbjct: 623 LATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQ 651 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 R H + ++DP+ I +R +A EGK +V D Sbjct: 652 EHINKETGRVHTSYVIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPEGKTIVSLD 711 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA MAG +AF G+D++ T + FNV ++T + R K + + Sbjct: 712 YSQIELRILAHMAGIDALKEAFREGQDIHAMTASEMFNVPMEEMTPEIRRQAKAINFGVI 771 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +A + + +E +M E Sbjct: 772 YGISGF---GLARNLRIPRGEAQAFID-----RYFERFPGIKTYMDETV----------- 812 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 A+ ++H RV L+ + + Sbjct: 813 --------AFAKEHKRVETLFGRI-----------------------------------I 829 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 P + R R+ +N +Q + DI+ M+ A Sbjct: 830 HTPEISASGPRAGFAKRAAINAP------------------IQGTAADIIRRAMVRMPGA 871 Query: 621 GYDI----VLTVHDEIVCETPDTDEFNASMLYH-LM--TSNPSWAKGLPLKAEG 667 +I +L VHDE++ E E + +M + P +PL + Sbjct: 872 IAEIPAKMLLQVHDELIFEVEQGAEDDLIAAARSVMEGAAEPVVKLDVPLVVDA 925 >gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] Length = 995 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 110/658 (16%), Positives = 205/658 (31%), Gaps = 132/658 (20%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 LF G D+ P + + + ++ LE+ V + N ++ V+K I I Sbjct: 438 LFG-GDDNRPQQ---LAANEAL-ALIGPLLEDPSVLKIGQNIKYDALVMKR---RGIEIV 489 Query: 92 RWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 + T++L+ + G A + + + +K Sbjct: 490 SFDDTMLLSYALDGGRGQHGMDALAERHLGHMCMTFAQAMGH------APGAKKSDKTFA 543 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200 EY D VT ++ L+P + E+ L + + G VD Sbjct: 544 AMPLDKATEYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVD 603 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + L+ +L++E+ L G + ++L LF L T++ Sbjct: 604 RDILSRLSHAFAQRTVRLEEEINGL-VGHKFNLGSPKQLGELLFDRLKLPGGKKTKSGQW 662 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR--LRGTLQFLGASRTGR 318 ++ E ++ D R + L++ ++ Sbjct: 663 ETRANLLDDL----------------------AANEEIDGDARRLINTMLEWRQMTKLKS 700 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373 P R H T +SDP+ I +R+ IA +G Sbjct: 701 TYTDALPAYINAETGRIHTSYALGATTTGRLASSDPNLQNIPIRTKEGREIRTAFIADKG 760 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 +L+ AD + IE RVLA +A KAF G D++ T + F V + + R K Sbjct: 761 MQLISADYSQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAK 820 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y A +A+ ++ + +KT Sbjct: 821 AINFGIIYGISAF---GLANQLSISREEASDYIKTYF----------------------- 854 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK-AIIARKRRDVPLVYMK 552 R + + + +Q +G I +R P + K Sbjct: 855 ---------------------QRFPGIRDYMDATKKQVHAHGHVETIFGRRIHYPEINTK 893 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 PS R R+ +N + G + I +A+ R + Sbjct: 894 N---------PSMRGF------LERAAINAPIQ---------GSAADIIRRAMIR--MPA 927 Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL--PLKAEG 667 +++A + ++L VHDE+V E D + +M + A L P+ + Sbjct: 928 ALVDAKLSSARMLLQVHDELVFEVADNEASALITTARRVMETAAEPALKLAVPIHVDA 985 >gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640] gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06] Length = 932 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 119/694 (17%), Positives = 208/694 (29%), Gaps = 170/694 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALEN 63 ID + A + + + F H P+ L K LEN Sbjct: 357 IDTETTSLD--AMNAAPVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQYVLDRLKPHLEN 414 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAV-GEALKLS 119 + + N +++ V C I ++ + +LA + L L + G L L Sbjct: 415 PALKKIGQNLKYDQHVFANC---GIALNGIVGDAMLASYIIESHLGHGLDELSGRWLGLE 471 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------- 171 + E C + A EY D + Sbjct: 472 TITYES-------LCGKGAKQIG------FADVAIGPATEYAAQDADFALRLEAHLRAQM 518 Query: 172 -FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K+LE E + + + G +D A + + E KL+QE + G Sbjct: 519 DDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYA-AAGQP 577 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + G+ + L +T T + VL P + NR A Sbjct: 578 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSLA- 636 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P PR R H Q + Sbjct: 637 ------------------------------KLKSTYTDKLPEMISPRDKRVHTTYAQAVA 666 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++P+ I VR A G +V AD + IE R++A ++G++ + Sbjct: 667 ITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 726 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ GED++ T A F +AP V+ +QR K + L Y G +A + G++ Sbjct: 727 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQY---GLAKSLGIDN 783 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + +R Sbjct: 784 LSA--------------------------------------------KNFIDRYFARYPG 799 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +A E G RR + N R+ Sbjct: 800 VAEYMQRARECAAGQGYVETLFGRRLYLSDIRHTNANI--------------RARAERAA 845 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633 +N Q + D++ M++ ++ +++ VHDE+V Sbjct: 846 INAPM------------------QGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELV 887 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P+ + + L +M + +PL AE Sbjct: 888 LEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAE 921 >gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] Length = 949 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 91/605 (15%), Positives = 183/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ D + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D VT ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + ++++E+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + + + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] Length = 920 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 101/600 (16%), Positives = 191/600 (31%), Gaps = 90/600 (15%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMP--QVLKEA 60 ID ET S + ++ +F +++ + + ++ K Sbjct: 351 SIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYIRIFKPL 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119 EN + + N ++ VL N + + + ++A P A L Sbjct: 401 YENDKILKIGQNIKYDYKVLN---NYGVTLQGEMFDTMIAHYLIQPELHHNMDYMAETLL 457 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + +ELI KG+ + + D + + EY D +T + LEP Sbjct: 458 GYRTIHIEELIGP--KGKKQKNMRDLSPTD-------ICEYAAEDADITLRLKHLLEPRL 508 Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + + G C+D ++I + +QE+ G Sbjct: 509 KELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEA-GE 567 Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + + T+T T + VL S + P Sbjct: 568 TFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVV----------- 616 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R L + G + P PR H +Q T Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQT 656 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R C I +G AD + IE R++A ++G++ + Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMM 716 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A+ ++ +VT QR K + Y +A G+ Sbjct: 717 EAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTY---GLAQRMGIPN 773 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 L++ ++ + E E A + T R ++ +SR + Sbjct: 774 GEARELIQ------DYFHTFPKVKAYMEQAKETARAKGYAETLFHR-RRYLPDINSRNAT 826 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRS 578 + + G K V + K++ ++L L + R Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886 >gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38] gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38] Length = 950 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 199/583 (34%), Gaps = 82/583 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENTDVTIVA 70 D GI A + ++ +F F+ D Q L E EN ++ + Sbjct: 381 DTETTGID--ALNAELVGMSFSFEKGKGFYVPFPEDQEEAQTLIEKFRPFFENENIEKIG 438 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N ++ +L N ++ + + ++A P LS ++ + I Sbjct: 439 QNMKYDLKILS---NYNMQVKGKLFDTMIAHYLINP---DMRHNMDVLSETYLKYAPKSI 492 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181 + L R+ P EY D +T ++ + +P+ K Sbjct: 493 ETLIGKKGKNQLSMRDVPLED-----IKEYATEDADITFQLKEHFQPILEKVGTKKLFDE 547 Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + + G +DV ++ + E +Q++ T G + ++L Sbjct: 548 IEIPLVPVLADMEKEGIRLDVEFLKNMSVDMQKEIDAFEQQIYE-TAGEKFNLASPKQLG 606 Query: 241 TWLFLET--GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + G + T+T T + VLS + R Sbjct: 607 DILFDKLKIGGAKQKKTKTGQYATGEEVLSYLANEHQIVRDILEWRQ------------- 653 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + P Q + R H + Q + +++P Sbjct: 654 ------------------MVKLQSTYIDALPNQVDKKTGRVHTDYMQTVAATGRLSSTNP 695 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R IA E L+ AD + IE R++A + GE+ +KAF+ ED+ Sbjct: 696 NLQNIPIRTEKGRLIRKAFIARDENYTLLSADYSQIELRIIAALCGEENMIKAFQNHEDI 755 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T A+ FN+ +VTK+QR+ K + + Y A +++ T L+ A L++ Sbjct: 756 HKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVSAF---GLSNQTNLSRKESAELIEA 812 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + ++F + E+ + G ++ + +S + + + Sbjct: 813 YY--QTYPKLKSFMTSQVDFARENGYVETISGR-----RRYLKDINSANAIVRGGAERNA 865 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 G A K + + +N ++L LV+ Sbjct: 866 VNAPIQGSAADIIKIAMINIHKKLTSENWKSKMLLQVHDELVF 908 >gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1] gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter sp. ADP1] Length = 920 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 120/679 (17%), Positives = 217/679 (31%), Gaps = 165/679 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55 ID ET + +D + AE ++ F+ FD HD + Sbjct: 350 IDTET-TSLD------YRVAE---MVGFSVAFDAQDAYYVPLTHDYDNAPEQLNREQILA 399 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 LK LE+ V + H+ ++ + N + + W +LA N + + Sbjct: 400 QLKPILEDETVHKIGHHLKYDAHI---FANHSVELKGWYFDTMLASYVINSVATRHGMDD 456 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A S +++ + K +T + + Y D VT +++ Sbjct: 457 VARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYRLYE 506 Query: 174 ----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +L+ E L+ ++ + + G +D + L+ L+ + Sbjct: 507 VLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLSVEFTETILGLENQA 566 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 L G + +++ LF + GL T T S+++ + + Sbjct: 567 IELA-GESFNVSSPKQVGEILFDKMGLKGGKKTATGQH---STSESILEKVEHPIAE--- 619 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 L+ S+ Q+ R H Q Sbjct: 620 -----------------------VILEHRTLSKLKNTYTDRLVEQSHNETHRVHTSYHQA 656 Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + ++ Sbjct: 657 LTATGRLSSSDPNLQNIPIRGEIGRQIRKAFIAPEGRILLAADYSQIELRLMAHFSQDEA 716 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF+ G+D++ T A N+ +VT DQR K + L Y + T Sbjct: 717 LLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTR- 775 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 E+++N+ + +P + R Sbjct: 776 ------------------EESQNYIKQYFHRYP------------------GIYEYMQRT 799 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 ++ L Q F +TI +R P + D N+++ G R Sbjct: 800 RQV--ALEQGFVETI-------LGRRLYTPDI----DARNMMVR-----------KGAER 835 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIV 633 + +N Q + DI+ M+ K ++L VHDE+V Sbjct: 836 AAINAPL------------------QGSAADIIKLAMIEVDKMLPKDQAKLLLQVHDELV 877 Query: 634 CETP-DTDEFNASMLYHLM 651 E D + A L M Sbjct: 878 FEVDADLADELAPKLAETM 896 >gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23] gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23] Length = 949 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 91/605 (15%), Positives = 183/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ D + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D VT ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + ++++E+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + + + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKVYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] Length = 923 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 114/684 (16%), Positives = 212/684 (30%), Gaps = 167/684 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52 ID ET + +D + AE ++ F+ FD H Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAQDAYYVPLAHTYENAPQQLNREQ 399 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 + +K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDTMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVATHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+P E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTMEGLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T ++++N+ + + +P + Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT--DEFNASMLYHLMT 652 E+V E DE + + ++M Sbjct: 878 ELVFEVDQNIADELS-KQIANVME 900 >gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101] gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101] Length = 949 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 99/584 (16%), Positives = 204/584 (34%), Gaps = 84/584 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENTDVTIVA 70 D GI A ++ +F ++ +VL + EN ++ + Sbjct: 380 DTETTGID--ALHAELVGMSFSYEKGKAFYVPFPESQEEAKVLIDKFVPFFENENIEKIG 437 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ +L N + + + ++A P A + + L Sbjct: 438 QNLKYDLKILS---NYGVTVKGKLFDTMIAHYLINPDMRHNMDILAETYLKYSPKSIETL 494 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181 I + K L R+ P EY D VT ++ + K Sbjct: 495 IGKKGK----NQLSMRDVP-----LEDIKEYAAEDADVTLQLKEIFTAELEKTETKKLFD 545 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +DV +++ +DVE L++++ T G + ++L Sbjct: 546 EIEIPLVSVLADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYE-TAGEKFNLASPKQL 604 Query: 240 KTWLFLET--GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 LF + G + T+T T + VL+ P Q+ + R Sbjct: 605 GDILFDKLKIGGAKQKKTKTGQYATGEEVLTYLANDNPIVKQILDWRQ------------ 652 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + P Q + R H + Q + +++ Sbjct: 653 -------------------MVKLQSTYILALPEQVDKKTLRVHTDYMQTVAATGRLSSNN 693 Query: 354 PDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R +A E L+ AD + IE R++A ++GE+ + AF+ GED Sbjct: 694 PNLQNIPIRTERGRQIRKAFVARDENYTLISADYSQIELRIIAALSGEENMIAAFQNGED 753 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A+ F+VA +V+++QR+ K + + Y A +++ T L+ + A L+ Sbjct: 754 IHRATAAKVFDVALEEVSREQRSNAKTVNFGIIYGVSAF---GLSNQTSLSRSESAALID 810 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + +++ + E +G ++ + +S + + + + Sbjct: 811 AYY--KTYPRLKSYISEQVDFAREKGYVQTILGR-----RRYLKDINSANAVVRSAAERN 863 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 G A K + + +++N ++L LV+ Sbjct: 864 AVNAPIQGSAADVIKIAMINIHKKLREENWKSKMLLQVHDELVF 907 >gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] Length = 923 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 117/697 (16%), Positives = 216/697 (30%), Gaps = 167/697 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 ID ET + +D + AE ++ F+ FD H+ Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAQDAYYVPLAHNYENAPQQLDREQ 399 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 + +K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+P E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T ++++N+ + + +P + Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKIAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E E + + +M S +PL E Sbjct: 878 ELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVE 912 >gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] Length = 971 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 105/694 (15%), Positives = 215/694 (30%), Gaps = 163/694 (23%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65 E S +D G ++ + F++ + PV D + + A E Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRTEAQKIVNEFRPAFEKEG 456 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122 V N ++ VL N + + ++A P + + E + Sbjct: 457 ALKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179 +ELI + +N + +Y D VT ++ LE Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + I G VD ++ ++++E+ L G + Sbjct: 563 DAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621 Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ LF + + T+T T + VL S + ++ +R Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G + P + H +Q +T Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R I +G + AD + IE R++A ++G+ ++AF Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G+D++ T A+ + ++ +VT++QR+ K + Y +A ++ Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L+ E +P+ +K+ + Sbjct: 828 KELIDG----------------YFETYPQ--------------IKEYMDKS--------- 848 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +AR++ + ++ +K LP S N+ Sbjct: 849 --------------IDLARRQGYIETIFGRK------RYLPDINS------------RNS 876 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 R +Q + DI+ M+ ++L VHDE+ Sbjct: 877 VVRGYAERNA-----INAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSV 931 Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 P+ E ++ M + ++ +PL+A+ G+ Sbjct: 932 LPEEKEKVQKIVIEEMEN--AYHMQVPLRADCGW 963 >gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] Length = 980 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 111/641 (17%), Positives = 195/641 (30%), Gaps = 142/641 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-A 115 LK LE+ V +A N ++ VLK +++ T++L+ + + E + Sbjct: 454 LKPMLEDPAVLKIAQNMKYDWLVLKRY-GVEMAPFD--DTMLLSYALDAGMGGNGMDELS 510 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + KE+ C + +D+ Y D VT ++K L Sbjct: 511 QRWLNHTPIPFKEV----CGSGKSQISFDK------VPLDKATAYAAEDADVTLRLWKIL 560 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ + + RG +D + L+ +L+ E+ + Sbjct: 561 KPRLAAEEMTVVYERLERPMVATLAKMERRGISIDRQMLSLLSGEFAQGAARLESEIHDV 620 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280 G + + ++L LF + GL T+T T VL ++ R Sbjct: 621 A-GEIFNVGSPKQLGEILFGKMGLPGGKKTKTGAWSTSASVLDDLAAQGHELPSKIVEWR 679 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ P R H Sbjct: 680 QL-------------------------------SKLKSTYTDALPSFINQETGRVHTSFS 708 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T +S+P+ I +R IA +GKKL+ AD + IE RVLA MA Sbjct: 709 LASTSTGRLSSSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISADYSQIELRVLAHMADI 768 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G D++ T + F V + R K + + Y A +A+ Sbjct: 769 PQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAF---GLANQL 825 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + E P I+D T K + + Sbjct: 826 GIARGEAGD----------------YIKTYFERFP--GIKDYMEET------KKFVHANG 861 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V ++ GR Y DV Sbjct: 862 YVETIF-------------------------------------------GRRAHYPDVNT 878 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + + G + I +A+ R + ++ ++L VHDE++ E Sbjct: 879 KNPNMRQFYERAAINAPIQGSAADIIRRAMVR---MDEVLETANLDAQMLLQVHDELIFE 935 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEGYESKRY 673 P+ + ++ M A L PLK E + + Sbjct: 936 LPEDQVDETKKLVIATMEKATEPALQLSVPLKVEAEAADNW 976 >gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14] gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14] Length = 920 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 94/613 (15%), Positives = 191/613 (31%), Gaps = 94/613 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57 L +D ET S + D ++ +F +++ + + + Sbjct: 348 KNLSLDTETTSTNAI----------DAELVGLSFAVEENKAFYVAIPAEREKALRIVNIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 K EN + + N ++ VL N DI I + ++A P + + E Sbjct: 398 KPLYENKKILKIGQNIKYDYEVL---LNYDIEIKGKMFDTMIAHYLIQPELHHNMDYLAE 454 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + +ELI K + + + D N + EY D +T + Sbjct: 455 V--FLNYQTIHIEELIGPKGKNQKN--MRDLNPKD-------VYEYAAEDADITLRLKNV 503 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LEP E L + + G C+D +++ K ++++ Sbjct: 504 LEPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNALQETSKVFTERMRKYEEKIYE 563 Query: 225 LTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 + +++ LF + + T+T T + VL S + P + Sbjct: 564 EAA-EKFNISSPKQVGDILFGKMHIMEKPKKTKTGQYVTSEEVLQSIRAKNPIVENIL-- 620 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + G + P R H Sbjct: 621 -----------------------------NYRGMKKLLSTYVDNLPTLINKRTGHIHTSF 651 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q +T +SDP+ I +R C I G AD + IE R++A ++G Sbjct: 652 NQALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSG 711 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AF G D++ T A+ ++ +VT QR K + Y +A Sbjct: 712 DENMIEAFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQANFGIIYGITTY---GLAQR 768 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 ++ + L+ ++ + E E A ++ + T R ++ + Sbjct: 769 MNISNSEAKDLIT------DYFKTFPKVQAYMEKAKEAARKNGYAETIFGR-RRYLADIN 821 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDV 573 S + + G K + + + + ++L L + Sbjct: 822 SHNGTVRGFAERNAINAPIQGSEADIIKVAMIKIWNRFRQEGIKSKMILQVHDELNFSVY 881 Query: 574 GNNRSYLNTTTRQ 586 + + Q Sbjct: 882 PEEKEKVEQIVIQ 894 >gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] Length = 930 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 93/525 (17%), Positives = 168/525 (32%), Gaps = 82/525 (15%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPS 107 + LK LE+ + + N +++ V N I + +LA + L Sbjct: 400 ETLLGSLKPYLESKTLLKIGQNLKYDQHV---FANHGIQLQGIAGDAMLASYVLESHLGH 456 Query: 108 ALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L + + L L + E C + + EY D Sbjct: 457 GLDELAQRWLGLETITYES-------LCGKGAKQIS------FADVSVEQATEYACQDAD 503 Query: 167 VTREIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 I L+ E + + + G +D A + + E K Sbjct: 504 FALRIEAHLKAQMSDEQRKMYEEMELPVAQVLFHMERNGVLIDRAELAQQSAELGAELLK 563 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTP 271 L+Q+ L G + ++L+ LF + G+ + L +T T + VL P Sbjct: 564 LEQQAYDLA-GQPFNLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNEAVLEQLAMDYP 622 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + NR A + P P Sbjct: 623 LPKIILQNRSLA-------------------------------KLKSTYTDKLPEMINPN 651 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q + +++P+ I VR IA E +V AD + IE Sbjct: 652 THRIHTNYAQAVAITGRLASNNPNLQNIPIRTSEGRRVRRAFIAPENSVIVSADYSQIEL 711 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A ++G+ ++AF+ GED++ T A F + P +T +QR K + L Y + Sbjct: 712 RIMAHLSGDATLIEAFKNGEDVHRRTAAEVFGMQPENITPEQRRYAKTINFGLIYGMSSY 771 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +A + G++ + +K A + E A + ++ T R Sbjct: 772 ---GLAKSLGIDNASADMFIKRYFARYT------GVADYMQRTKEQAADLGYVETLFGR- 821 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + H++ ++ +A G A KR + + Sbjct: 822 RLYLPDIHAKNAQARAGAERAAINAPMQGTASDLIKRAMIAVDDF 866 >gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2] gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2] gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2] Length = 949 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 91/605 (15%), Positives = 183/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ D + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D VT ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + ++++E+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + + + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58] gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58] Length = 938 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 124/713 (17%), Positives = 218/713 (30%), Gaps = 187/713 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 T+ ID ET + +D A + ++ + F H P+ L Sbjct: 353 TIGIDTET-TSLD---------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 K L N + + N +++ V N I ++ +LA + L L Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHV---FANYGIALNGIAGDAMLASYIIESHLGHGL 459 Query: 110 KAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + E L L + E C + A EY D Sbjct: 460 DELSERWLGLETITYES-------LCGKGAKQIG------FADVAIGQATEYAAQDADFA 506 Query: 169 REIFKRLEP-LSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L + K+ E++ + + G +D A + + E KL+ Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQA 273 QE + G + ++L+ LF + G+ + L +T T + VL P Sbjct: 567 QEAYA-AAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + NR A + P P+ Sbjct: 626 KIILQNRSLA-------------------------------KLKSTYTDKLPEMISPKDG 654 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + +++P+ I VR A +G +V AD + IE R+ Sbjct: 655 RVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRI 714 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G++ + AF+ GED++ T A F AP V+ +QR K + L Y G Sbjct: 715 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMGQY-- 772 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + G++ + + + Sbjct: 773 -GLAKSLGIDNLSAKNFID----------------------------------------- 790 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + + EQ G RR L LP R+ Sbjct: 791 ---RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRR---------------LYLPDIRNK 832 Query: 569 VY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------- 617 G R+ +N Q + D++ M++ Sbjct: 833 NANARAGAERAAINAPM------------------QGTASDLIKRAMIDVSRWLSECEAS 874 Query: 618 ---TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E +T+ +F L +M +PL AE Sbjct: 875 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAE 927 >gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] Length = 912 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 96/558 (17%), Positives = 187/558 (33%), Gaps = 84/558 (15%) Query: 5 FIDFETRSPIDLTK--CGICKYAEDVCVILFAFGF-------DDHPVELWDCVHDPVMPQ 55 ID ET S + G+ C+ L + P +L + + Q Sbjct: 338 SIDTETTSLNPMEAKLVGL-----SFCMELGQAAYIPLAHHYPGVPSQL----NREQVLQ 388 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 LK LE+ + + N ++R V + I TL+ + + A Sbjct: 389 RLKPWLESDEKLKIGQNLKYDRHVFANHGVMLNGI--VHDTLLQSYVLESHLSHDLDSLA 446 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + E+ + K + G Y D + + + L Sbjct: 447 SRHLGIQTISYDEVTGKGAK----------RIGFEQVEIHRAGIYAAEDADIPLRLHRVL 496 Query: 176 EPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P+ S++ L Y+ Q I G +D L + + + L+Q+ S Sbjct: 497 YPVISQDAHLEYIYQQIEIPLLEVLFRIERNGVLLDTDLLRVQSGELTQQLVALEQQAHS 556 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 L G + ++++ LF + L + T P + R+ Sbjct: 557 LA-GHAFNLNSTKQIQEILFGQHKLPVIKKTPKGV-----------PSTDEEVLQRL--- 601 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 ++ L ++ L + G ++ P + R H Q + Sbjct: 602 -ASDYPLPKVL------------LDYRGLAKLKSTYIDKLPQMVNKQTGRVHTHYAQAVA 648 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R IA +G ++ AD + IE R++A ++G+ + Sbjct: 649 VTGRLASNDPNLQNIPVRTPEGRRIREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLI 708 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F V QV +QR KV+ L Y +A+ G+ Sbjct: 709 HAFSEGQDIHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMSEF---GLATQLGIER 765 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + A + ++ + +E +H + +G R++ + + + R + Sbjct: 766 TAARTFIDRYFAR--YPGVADYMQRTRELAKQHGYVETVLGR---RLQLSDIRSNQRNRQ 820 Query: 520 LWNELHQAFEQTIENGKA 537 + +A G A Sbjct: 821 M--GAERAAINAPMQGTA 836 >gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A] gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A] Length = 971 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 92/599 (15%), Positives = 193/599 (32%), Gaps = 85/599 (14%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65 E S +D G ++ + F++ + PV D + + A E Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRAEAQKIVNEFRPAFEKEG 456 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122 V V N ++ VL N + + ++A P + + E + Sbjct: 457 VLKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179 +ELI + +N + +Y D VT ++ LE Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + + G VD ++ ++++E+ L G + Sbjct: 563 DAEKLFYEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621 Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ LF + + T+T T + VL S + ++ +R Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G + P + H +Q +T Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R I +G + AD + IE R++A ++G+ ++AF Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G+D++ T A+ + ++ +VT++QR+ K + Y +A ++ Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L+ + + + + + A +I T R K+ +SR S + Sbjct: 828 KELIDG------YFETYPQIKEYMDKSIDLARGQGYIETIFGR-KRYLPDINSRNSVVRG 880 Query: 523 ELHQAFEQT-IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + I+ G A I + + + ++L L + + + + Sbjct: 881 YAERNAINAPIQGGAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEKV 939 >gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289] gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289] Length = 920 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 101/600 (16%), Positives = 192/600 (32%), Gaps = 90/600 (15%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMP--QVLKEA 60 ID ET S + ++ +F +++ + + ++ K Sbjct: 351 SIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYVRIFKPL 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119 EN ++ + N ++ VL N + + + ++A P A L Sbjct: 401 YENDNILKIGQNIKYDYEVLN---NYGVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLL 457 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + +ELI KG+ + + D + + EY D +T + LEP Sbjct: 458 GYRTIHIEELIGP--KGKKQKNMRDLSPTD-------ICEYAAEDADITLRLKHLLEPRL 508 Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + + G C+D ++I + +QE+ G Sbjct: 509 KELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEA-GE 567 Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + + T+T T + VL S + P Sbjct: 568 TFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVV----------- 616 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R L + G + P PR H +Q T Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQT 656 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R C I +G AD + IE R++A ++G++ + Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMM 716 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A+ ++ +VT QR K + Y +A G+ Sbjct: 717 EAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTY---GLAQRMGIPN 773 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 L++ ++ + E E A + T R ++ +SR + Sbjct: 774 GEARELIQ------DYFHTFPKVKAYMEQAKETARAKGYAETLFHR-RRYLPDINSRNAT 826 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRS 578 + + G K V + K++ ++L L + R Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886 >gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] Length = 902 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 P +L + + LK LE+ + TI+ N ++ VL + I + Sbjct: 365 GAPAQL----DKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417 Query: 99 LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 LA S+ ALK + M + +++ + K + + Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205 Y D VT ++ +L PL KE L + + RG VD A+ Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQ 527 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261 + + L+Q+ L G + ++L+T L+ E L + +T + Sbjct: 528 AQSIELGGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL P + +R ++ Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P Q P R H +Q +T +++P+ I +R IA G ++ Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 676 VAADYSQVELRIIAHVSKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y + + G+ + + + A Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAQEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R + H+ + +A G A D+ + M K + Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 L +N V+A Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E + D E + M A +PL + Sbjct: 849 ------HLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891 >gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] Length = 911 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 105/607 (17%), Positives = 188/607 (30%), Gaps = 90/607 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----QVLKEALENT 64 D + A ++ +F F+ H DP +P + LK LE+ Sbjct: 338 DTETTSLD--AMRAEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRAETLERLKPWLESE 395 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQK 122 + H+ ++R VL N I + + +L A A + K Sbjct: 396 RHGKLGHHLKYDRNVLG---NHGITLRGIVDDTLLESFCLDAGANRHDLDSLAERHLDYK 452 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179 +++ + K P + +Y D + ++ +P Sbjct: 453 TTHYEDVAGKGVKQ----------IPFAEVDIGIATDYAGEDADICLQLDAVFQPRLQAA 502 Query: 180 --------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + I G VD +Q + E ++++E G Sbjct: 503 EGPAFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEMERIEREAFEEAGG-EF 561 Query: 232 SSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++++ LF GL + +T + VL + +R Sbjct: 562 NLGSPKQIQEILFERLGLPVLRRTPKGQPSTAEDVLEQMADDYALPRLILEHR------- 614 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G S+ P + P R H Q Sbjct: 615 ------------------------GLSKLRSTYTETLPRRIHPETGRVHTSYHQAGAATG 650 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R IA EG +L+ AD + IE R++A ++ + LKAF Sbjct: 651 RLSSSEPNLQNIPVRTEAGRRIRRAFIAEEGHQLLAADYSQIELRIMAHLSQDAGLLKAF 710 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G+D++ T A F + P QV+ DQR K + L Y A +A G+ Sbjct: 711 AEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAINFGLIYGMSA---WGLARNLGIEQGEA 767 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + E E+ ++ T R + + +SR Sbjct: 768 REYIDRYFSRYP------GVHDYMERARASGRENGYVETLFGR-RLYLPEINSRNGARRQ 820 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLN 581 + + G A KR V + + +D +++ LV+ L Sbjct: 821 QSERVAINAPMQGTAADIIKRAMVRVAHDLEDTGIDARMIMQVHDELVFEVADAAVEDLT 880 Query: 582 TTTRQLT 588 T R+ Sbjct: 881 TLVRKAM 887 >gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179] gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179] Length = 925 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 105/623 (16%), Positives = 190/623 (30%), Gaps = 148/623 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ ++ V N ++ T+L + T++ + + A Sbjct: 404 LKTVLEDPNIKKVGQNLKYDLTILARHGVELQGV--VYDTMLESYTLDSTGRHNMDDLAK 461 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ++L + T + + EY D VT ++ + L Sbjct: 462 RFLHHDTIHFEDLAGKGKGQLTFDQI----------EIDKAAEYAAEDADVTFKLHQVLW 511 Query: 177 PL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P + E L + + G +D L + +Q ++ +L+Q+ L Sbjct: 512 PQLNQTPSLVKLFTEVELPLSQVLARMERNGVLIDSDLLYQQSQEINARLIQLEQQAHQL 571 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + GL + T T + VL + +R Sbjct: 572 A-GQAFNLASTKQLQEILFGKLGLPVLKKTPKGAPSTNEEVLEELAYEHELPKLLVEHR- 629 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 630 ------------------------------GFSKLKSTYTDKLPQMIDPNTGRVHTSYHQ 659 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G K+V AD + IE R++A ++ + Sbjct: 660 AVTITGRLSSSDPNLQNIPTRSEEGRKIRQAFIAPQGFKVVAADYSQIELRIMAHLSADA 719 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 AF G D++ +T A F+V QVT QR K + L Y A +A Sbjct: 720 GLAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAINFGLIYGMSAF---GLARQLQ 776 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + N + + Sbjct: 777 IPRNEAQTYIDRYFHR-----------------------------------------YPG 795 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + N++ + +Q + ++ R+ L LP +S Sbjct: 796 VKQFMNDIQEKAKQQ-GYVETLLGRR-----------------LYLPELKSS-------- 829 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDE 631 N R+ +Q + DI+ + M++ K +++ VHDE Sbjct: 830 ----NGMRRKAAERVA-----INAPMQGTAADIIKKAMIDIDRFIADKNDIRMIMQVHDE 880 Query: 632 IVCETPDTDEFNASMLYHLMTSN 654 +V E + + M N Sbjct: 881 LVFEVKEDKVEYYEKIIKDMMEN 903 >gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1] gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1] Length = 927 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 117/699 (16%), Positives = 215/699 (30%), Gaps = 175/699 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----Q 55 +D ET S +L ++ +F + H +P + Sbjct: 355 LDTETNSLDELR----------AQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLDTVLE 404 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 LK LE+ + + ++R V N I + + T++ + + Sbjct: 405 RLKPWLEDASRPKLGQHVKYDRHV---FANHGIDVRGYAHDTMLQSYVLEVHRPHNLASL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + + ++L + K P + Y D T ++ + Sbjct: 462 AERHTGRTGISYEDLCGKGAKQ----------IPFAQVPVEQAAAYSCEDSDQTLDVHRV 511 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L PL E E + I G +D A + + +L+QE Sbjct: 512 LWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDTATLQQQSHDLGQRILRLEQEAYD 571 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + G + ++L F + GL + T T T + VL + P ++ +R Sbjct: 572 IA-GQPFNLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPAKILEHR 630 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + A PR R H Sbjct: 631 SLSKLKGTYTDKLGQLA-------------------------------DPRTGRVHTHYA 659 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +++P+ I VR +A G+ + AD + IE R++A ++G+ Sbjct: 660 QAVAVTGRLSSNEPNLQNIPIRTAEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF G D++ T A F VA QV+ +QR KV+ L Y + +A Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSF---GLARNL 776 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + ++ ++M E Sbjct: 777 GIDNKAAAAYID-----RYFQRYPGVKQYMDET--------------------------- 804 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A + + + R+ L LP S G Sbjct: 805 ----------KASAKARGYVETVFGRR-----------------LYLPEINSPNGPRRGA 837 Query: 576 -NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTV 628 R+ +N Q + D++ + M ++A K +++ V Sbjct: 838 AERAAINAPM------------------QGTAADLIKKAMVAVQAVLDADKPQVLMIMQV 879 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P+ + + + LM +PL AE Sbjct: 880 HDELVFELPEEESGWLRTEVPRLMAGVAE--LKVPLLAE 916 >gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666] gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666] Length = 944 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 114/694 (16%), Positives = 210/694 (30%), Gaps = 173/694 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALEN 63 +D + + ++ +F HD +P+ LK LEN Sbjct: 372 VDTETTSLDEML--AQIVGISFSVTPGEAAYIPLTHDYPDAPAQLPRDEVLARLKPWLEN 429 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAVGEALKLSS 120 + + + ++R V N I + + T++ + P L ++ E Sbjct: 430 PAIAKLGQHVKYDRHV---FANHGIEVQGYAHDTMLQSYVLEVHKPHGLASLAERHV--- 483 Query: 121 QKMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 G+ I C H+ ++ + EY D T ++ + L P Sbjct: 484 -----GRSGINYEDLCGKGVHQIKFN------QVDIAKAAEYSCEDSDQTLDVHRVLWPQ 532 Query: 179 SSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 +L + L+ I G +D + + +L+ E L G Sbjct: 533 IEANDKLRFVYELEMKSSETLYRIERNGVLIDAPTLAKQSGELGARIVQLEAEAHELA-G 591 Query: 229 LVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + GL + +T + VL + P ++ +R Sbjct: 592 QPFNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHR---- 647 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 G S+ PR R H Q + Sbjct: 648 ---------------------------GLSKLKGTYTDKLAQLAHPRTGRVHTHYAQAVA 680 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I VR +A G + AD + IE R++A ++ ++ L Sbjct: 681 VTGRLSSNDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHLSEDEALL 740 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A F VA QV+ +QR KV+ L Y + +A G+ Sbjct: 741 RAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSF---GLARNLGIET 797 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + + A ++ T R R ++ Sbjct: 798 KAAAAYIDRYFQRYP------GVKHYMDETRLSAKSKGYVETVFGR-----RLYLPEINS 846 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 P+G R G R+ Sbjct: 847 -------------------------------------------PNG----PRRGGAERAA 859 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIV 633 +N Q + D++ M ++A K +++ VHDE+V Sbjct: 860 INAPM------------------QGTAADLIKLSMVKVQEVLDAEKRATKMIMQVHDELV 901 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P+ + E+ + +M +PL AE Sbjct: 902 FEVPEAEVEWVRVEIPRIMAGVAD--LRVPLLAE 933 >gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583] gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583] Length = 968 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 109/649 (16%), Positives = 209/649 (32%), Gaps = 143/649 (22%) Query: 46 DCVHDPVMPQV---------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 D + LK LEN V + N ++ V++ DI I + T Sbjct: 422 DLFGGERIVGQIETQRALALLKPILENQAVLKIGQNMKYDWLVMRQY---DITIRSFDDT 478 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWR 155 ++L+ L A + G IA K T + + + + Sbjct: 479 MLLS------YVLDAGISTHGMDVLSERWLGHTPIAY--KNLTCDGK--KIVSFAQVDLK 528 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAH 205 Y D +T +++ L+P + + L + + +RG VD + Sbjct: 529 QATLYAAEDADITLRLWQVLKPQLVAQGMTKIYERLDRPLIEVLARMEERGILVDRQILS 588 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265 L+ + L++E+ L G + ++L LF + GL T+ + Sbjct: 589 CLSGELAQAALSLEEEIYQLA-GEQFNIASPKQLGDILFSKIGLPGGAKTKGGQWSTSAQ 647 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + + R + + ++ P Sbjct: 648 ILEELAAEGHMLP--------------------------RKIVDWRQIAKLKSTYTDALP 681 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 P+ R H T +S+P+ I +R+ IASEG L+ AD Sbjct: 682 SYISPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLSAD 741 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +A +AF G+D++ T ++ F VA +++ D R K + + Sbjct: 742 YSQIELRLLAHIADITALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFGII 801 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A +A+ G++ +H + Sbjct: 802 YGISAF---GLANQLGISREEASHYI---------------------------------- 824 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLI 559 R R + + + ++G I +R P + + + Sbjct: 825 ----------RVYFERFPGIQSYMEATKIFARQHGYVETIFGRRIHYPEIKARDRQ---- 870 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 N R+ +N + G + I +A+ I EG + Sbjct: 871 -----------VRAFNERAAINAPIQ---------GSAADIIRRAM---IQMEGALEKEG 907 Query: 620 AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWAKGLPLKA 665 ++L VHDE++ E P + E +++ +M + P+ + +PL+ Sbjct: 908 LSAKMLLQVHDELIFEIPKAESEKTKAIVKKVMENATMPALSLSVPLEV 956 >gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] Length = 921 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 100/608 (16%), Positives = 187/608 (30%), Gaps = 93/608 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET S + D ++ +F + + + + Sbjct: 349 KILSLDTETTSTSAI----------DAELVGLSFAVKEFEAFYVPVPANREEALQIVNIF 398 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K A EN ++ V N ++ VL+ N I + + ++A P + + Sbjct: 399 KPAYENPEILKVGQNLKYDLEVLR---NYGIELKGKMWDTMIAHYLIQPELHHNMDYMAE 455 Query: 118 LS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + + +ELI + R+ P EY D +T + +LE Sbjct: 456 IYLNYQTIHIEELIG----PKGKNQKSMRSLPP-----SQVYEYAAEDADITLRLKNKLE 506 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P K E L + + G C+D A ++ +++ + L Sbjct: 507 PELKKAECEDLFYNIEMPLMPVLAEMELNGVCLDTASLAETSKQFTNRMNEIEARIYELA 566 Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ LF + + T+T T + VL + + +R Sbjct: 567 -GEQFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLQQLRNKHEIVADILEHR- 624 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G + P P+ H +Q Sbjct: 625 ------------------------------GLKKLIGTYIDALPKLINPKTGHIHTSFNQ 654 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 IT +SDP+ I +R I G AD + IE RV+A ++ + Sbjct: 655 TITATGRLSSSDPNLQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDA 714 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +K F G+DL+ T A + +VT+D+R K + Y +A Sbjct: 715 EMIKVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIYGITVF---GLAERLD 771 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + L+ + D E E A E ++ T R ++ +S Sbjct: 772 IPRDEAKMLIDG------YFDTFPQVHDYMEKSKEVAREKGYVTTLFGR-RRYLPDINSH 824 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLV---YRD 572 + + + G A K + + K + ++L L Y D Sbjct: 825 NATVRGFAERNAINAPIQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDELNFSVYPD 884 Query: 573 VGNNRSYL 580 + Sbjct: 885 EKEKVEGI 892 >gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2] Length = 833 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 104/546 (19%), Positives = 179/546 (32%), Gaps = 140/546 (25%) Query: 149 NHREAWRL-----FGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTIND 194 H E F E ++ +F+ L P E+ L + + Sbjct: 387 THPEGVARRYGGEFTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAHMEA 446 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 RG +DV L L+ ++ E +L+ E+ L G + ++L+ LF E GL Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLA-GHPFNLNSRDQLERVLFDELGLTPVGR 505 Query: 255 TETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 TE T +R L + + P + Q Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELIL-------------------------------Q 534 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCV 364 + S+ P PR R H +Q T +SDP+ I + + Sbjct: 535 YRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRI 594 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R +A EG L+ AD + IE RVLA ++G++ + F G+D++ T A F + PA V Sbjct: 595 RKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALV 654 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 + R K + + Y A +++ G++ +++AE F Sbjct: 655 DQKMRRAAKTVNFGVLYGMSA---HRLSQELGID----------------YKEAEAFIER 695 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 ++ P+ +AW ++ + + +RR Sbjct: 696 YFQSFPK---------------VRAWIERTLEEGRTRGYVE------------TLFGRRR 728 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 VP + + R N VQ Sbjct: 729 YVPDLASRVRS---------------VREAAERMAFNMP------------------VQG 755 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660 + D++ M G ++L VHDE+V E P+ A L + N ++ Sbjct: 756 TAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMEN-AYPLD 814 Query: 661 LPLKAE 666 +PL+ E Sbjct: 815 VPLEVE 820 >gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] Length = 971 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 105/694 (15%), Positives = 215/694 (30%), Gaps = 163/694 (23%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65 E S +D G ++ + F++ + PV D + + A E Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRTEAQKIVNEFRPAFEKEG 456 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122 V N ++ VL N + + ++A P + + E + Sbjct: 457 ALKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179 +ELI + +N + +Y D VT ++ LE Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + I G VD ++ ++++E+ L G + Sbjct: 563 DAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621 Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ LF + + T+T T + VL S + ++ +R Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G + P + H +Q +T Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R I +G + AD + IE R++A ++G+ ++AF Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G+D++ T A+ + ++ +VT++QR+ K + Y +A ++ Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L+ E +P+ +K+ + Sbjct: 828 KELIDG----------------YFETYPQ--------------IKEYMDKS--------- 848 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +AR++ + ++ +K LP S N+ Sbjct: 849 --------------IDLARRQGYIETIFGRK------RYLPDINS------------RNS 876 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 R +Q + DI+ M+ ++L VHDE+ Sbjct: 877 VVRGYAERNA-----INAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSV 931 Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 P+ E ++ M + ++ +PL+A+ G+ Sbjct: 932 LPEEKEKVQKIVIEEMEN--AYHMQVPLRADCGW 963 >gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY] gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY] Length = 922 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 118/701 (16%), Positives = 227/701 (32%), Gaps = 179/701 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----Q 55 +D ET S +L ++ +F + H+ P +P + Sbjct: 350 LDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVLE 399 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 L+ LE+ + + ++R V N I + + T++ + + Sbjct: 400 RLRPWLEDPACPKLGQHVKYDRHV---FANHGIQVRGYAHDTMLQSYVLEVHKPHGLTSL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + + ++L + K P + Y D T ++ + Sbjct: 457 AERHTGRTGISYEDLCGKGAKQ----------IPFAQVPVDKAAAYSCEDSDQTLDVHRV 506 Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L P + +L + L+ I G +D + + +L+QE + Sbjct: 507 LWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQEAYA 566 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + G + ++L F + G+ + T T T + VL + P ++ +R Sbjct: 567 IA-GQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 625 Query: 281 M--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + KL+TL + PR R H Sbjct: 626 SLCKLKGTYTDKLSTLAD---------------------------------PRTGRVHTH 652 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + +++P+ I VR +A G+ + AD + IE R++A ++ Sbjct: 653 YAQAVAVTGRLSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHIS 712 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L AF G D++ T A F VA QV+ +QR KV+ L Y + +A Sbjct: 713 GDEALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSF---GLAK 769 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ A + ++ ++M+E Sbjct: 770 NLGIETKAAAAYID-----RYFQRYPGVKQYMEET------------------------- 799 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 +A + + + R+ L LP S Sbjct: 800 ------------KAQAKARGYVETVFGRR-----------------LYLPEINSPNGPRR 830 Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVL 626 G R+ +N Q + D++ + M ++A K +++ Sbjct: 831 GAAERAAINAPM------------------QGTAADLIKKAMVAVQGELDARKPEVLMIM 872 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P+ + ++ + LM A +PL AE Sbjct: 873 QVHDELVFELPEGEVDWLRREIPRLMAGVA--ALQVPLLAE 911 >gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] Length = 971 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 92/599 (15%), Positives = 192/599 (32%), Gaps = 85/599 (14%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65 E S +D G ++ + F++ + PV D + + A E Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRAEAQKIVNEFRPAFEKEG 456 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122 V V N ++ VL N + + ++A P + + E + Sbjct: 457 VLKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179 +ELI + +N + +Y D VT ++ LE Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + + G VD ++ ++++E+ L G + Sbjct: 563 DAEKLFYEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621 Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ LF + + T+T T + VL S + ++ +R Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G + P + H +Q +T Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R I +G + AD + IE R++A ++G+ ++AF Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAF 770 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G+D++ T A+ + ++ +VT++QR+ K + Y +A ++ Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L+ + + + + + A +I T R K+ +SR S + Sbjct: 828 KELIDG------YFETYPQIKEYMDKSIDLARGQGYIETIFGR-KRYLPDINSRNSVVRG 880 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K V + + + ++L L + + + + Sbjct: 881 YAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEKV 939 >gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] Length = 949 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 90/605 (14%), Positives = 182/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ D + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPADQEEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGVQVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L+ + ++E + R+ Y D VT ++ Sbjct: 484 IYLRYQTIHIDE-------LIGPKGKNQKNMRDLAPKD-----VYRYACEDADVTLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + +++E+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMENIEKEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L+ + + + + + A E ++ T R K+ Sbjct: 797 RMNVERKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 + Sbjct: 910 PVEEK 914 >gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 95/604 (15%), Positives = 182/604 (30%), Gaps = 86/604 (14%) Query: 14 IDLTKCGI-CKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALE 62 +D + + A ++ +F HD + +LK LE Sbjct: 353 VDTETTSLDYRLA---RIVGVSFALQAGEAFYIPIGHDYMGAPEQLDAQFVLDILKPILE 409 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSS 120 N + + + ++ V N I + W +LA P+A A + Sbjct: 410 NPAIGKIGQHMKYDAHVFN---NHGISLAGWAFDTMLASYVLNPTATRHGMDDLAQYYLN 466 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 +++ + K T + Y D +T +++ Sbjct: 467 YTTTTFEQIAGKGAKQLTFNQI----------ELEKAAPYAAEDADITWRLYEHFSKELA 516 Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L E + + + G +D+ L Q + L+ L G Sbjct: 517 KIPRLERLLLDAEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELA-GQ 575 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + ++L LF + G+ + T ++ + + + Sbjct: 576 PFNVSSPKQLGEILFDKLGIA---GGKKTASGQYATGEAILEKIDHPI------------ 620 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ S+ Q+ P R H Q I Sbjct: 621 --------------IATILEYRSLSKLKSTYTDSLIAQSDPATQRVHTSYHQAIAATGRL 666 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IA +G+ ++ AD + IE R++A + ++ LKAF Sbjct: 667 SSTDPNLQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRD 726 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T A +A VT DQR K + L Y A +A L+ Sbjct: 727 GRDIHQATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAF---GLAKQLNLSRAEAQE 783 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + EN A E ++ T R + + + + Sbjct: 784 YITLYFSRYP------SVHDYMENTRALAAEQGYVETVLGR-RLYMENIRAGNAMVRQAA 836 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A G A K + V K + ++L LV+ + + Sbjct: 837 ERAAINAPLQGSAADIIKLAMIS-VDQSLPKEHAKMLLQVHDELVFEVDEDKADEVTALL 895 Query: 585 RQLT 588 ++L Sbjct: 896 KKLM 899 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 10/89 (11%) Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYD 623 L R N N RQ L Q + DI+ M++ K Sbjct: 816 LGRRLYMENIRAGNAMVRQAAERAAINAPL-----QGSAADIIKLAMISVDQSLPKEHAK 870 Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLM 651 ++L VHDE+V E + ++L LM Sbjct: 871 MLLQVHDELVFEVDEDKADEVTALLKKLM 899 >gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 927 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 119/699 (17%), Positives = 216/699 (30%), Gaps = 175/699 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----Q 55 +D ET S +L ++ +F + H +P + Sbjct: 355 LDTETTSLDELR----------AEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAVLE 404 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 LK LE+ + + ++R V N DI + + T++ + + Sbjct: 405 RLKPWLEDGSRAKLGQHVKYDRHV---FANHDIGVRGYVHDTMLQSYVLEVHKPHNLASL 461 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + + ++L + K P + Y D T ++ + Sbjct: 462 AERHTGRTGISYEDLCGKGAKQ----------IPFAQVPVEQAAAYSCEDSDQTLDVHRV 511 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L PL E E + I G +D A + + KL+QE Sbjct: 512 LWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDPATLQQQSHDLGQRILKLEQEAYD 571 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + G + ++L F + GL + T T T + VL + P ++ +R Sbjct: 572 IA-GQPFNLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPAKILEHR 630 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ PR R H Sbjct: 631 SL-------------------------------SKLKGTYTDKLSQLADPRTGRVHTHYA 659 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +++P+ I VR +A G+ + AD + IE R++A ++G+ Sbjct: 660 QAVAVTGRLSSNEPNLQNIPIRTSEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF G D++ T A F VA QV+ +QR KV+ L Y + +A Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSF---GLARNL 776 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A + ++ ++M E Sbjct: 777 GIDNKAAAAYID-----RYFQRYPGVKQYMDET--------------------------- 804 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A + + + R+ L LP S G Sbjct: 805 ----------KASAKARGYVETVFGRR-----------------LYLPEINSPNGPRRGA 837 Query: 576 -NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTV 628 R+ +N Q + D++ + M ++A K +++ V Sbjct: 838 AERAAINAPM------------------QGTAADLIKKAMVAVQAVLDADKPQVLMIMQV 879 Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P+ + + + LM +PL AE Sbjct: 880 HDELVFELPEEEAGWLRTEIPRLMAGVAE--LKVPLLAE 916 >gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1] gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1] Length = 968 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 113/633 (17%), Positives = 215/633 (33%), Gaps = 142/633 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V + N ++ V+K I IH + T++L+ AL+A Sbjct: 442 LKPILEDQAVLKIGQNIKYDWLVMKQY---GIVIHCFDDTMLLS------YALEAGTLTH 492 Query: 117 KLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +++ G + IA K TH + + Y D +T +++ L Sbjct: 493 NMNALSERWLGHKPIAY--KDLTHNGK--KITSFAEVDLKQATLYAAEDADITLRLWQVL 548 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + + L + + +RG VD + L+ + L++E+ L Sbjct: 549 KPQLVAQGMTRIYERLDRPLIEVLARMEERGILVDRQILLRLSGELAQAAFILEEEIYQL 608 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFNNR 280 + G + ++L LF + GL T+ +T + L ++ + R Sbjct: 609 S-GEKFNLASPKQLGDILFGKMGLPGGAKTKGGQWSTSAQTLEELAAEGHILPRKIIDWR 667 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + P LP+ R H Sbjct: 668 QLA-------------------------------KLKSTYTDALPSYILPKTGRVHTNYS 696 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 IT +S+P+ I +R+ +A + L+ AD + IE R+LA +A Sbjct: 697 LAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFVAPKRHVLLSADYSQIELRILAHIANI 756 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G+D++ T ++ F VA + D R K + + Y A +A+ Sbjct: 757 TALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINFGIIYGISAF---GLANQL 813 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 GL+ ++A + + E P I+D T K + +++ Sbjct: 814 GLSR----------------QEAGRYIQLYFERFP--GIKDYIETT------KTFARQNG 849 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V ++ GR + Y ++ Sbjct: 850 YVETIF-------------------------------------------GRRIHYPEIKA 866 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 + + + G + I +A+ I E + K ++L VHDE+V E Sbjct: 867 ASPQVRSFNERAAINAPIQGSAADIIRRAM---IQMEDALEKEKLSAKMLLQVHDELVFE 923 Query: 636 TPDTDE-FNASMLYHLM--TSNPSWAKGLPLKA 665 P+ + +++ +M + P + +PL+ Sbjct: 924 VPEEESKKTMAVVKKVMENATMPVLSLSVPLEV 956 >gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] Length = 921 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 102/588 (17%), Positives = 183/588 (31%), Gaps = 83/588 (14%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTD 65 + G A+ ++ +F H H + + LK LE+ D Sbjct: 340 IQSNGTD--AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPD 397 Query: 66 VTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKL 118 T V ++ F +L C I + +L + + K Sbjct: 398 KTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKY 457 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177 + +E+ + K T + + A G+Y + +T + + E Sbjct: 458 LTHTPINFQEIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEAR 507 Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 L+ E L + I +G VD L + + + T L++E ++ Sbjct: 508 LAAIPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA- 566 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G + ++L L+ + G+ + T T + + + Sbjct: 567 GEEFNLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL------ 620 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +Q+ S+ P Q PR R H Q + Sbjct: 621 --------------------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTG 660 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R +A +G KL+ AD + IE R++A +A ++ L AF Sbjct: 661 RLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAF 720 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 D++ T A F V VT D R K + L Y A +A G++ Sbjct: 721 RNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQS 777 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 V A E A E F+ T R + +++ L Sbjct: 778 QAYVDRYFARYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRK 830 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + G A K+ V + ++ + ++L LV Sbjct: 831 GAERMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878 >gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42] gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42] Length = 922 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 118/701 (16%), Positives = 227/701 (32%), Gaps = 179/701 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----Q 55 +D ET S +L ++ +F + H+ P +P + Sbjct: 350 LDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVLE 399 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 L+ LE+ + + ++R V N I + + T++ + + Sbjct: 400 RLRPWLEDPACPKLGQHVKYDRHV---FANHGIQVRGYAHDTMLQSYVLEVHKPHGLASL 456 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + + ++L + K P + Y D T ++ + Sbjct: 457 AERHTGRTGISYEDLCGKGAKQ----------IPFAQVPVDKAAAYSCEDSDQTLDVHRV 506 Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L P + +L + L+ I G +D + + +L+QE + Sbjct: 507 LWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQEAYA 566 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + G + ++L F + G+ + T T T + VL + P ++ +R Sbjct: 567 IA-GQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 625 Query: 281 M--RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + KL+TL + PR R H Sbjct: 626 SLCKLKGTYTDKLSTLAD---------------------------------PRTGRVHTH 652 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + +++P+ I VR +A G+ + AD + IE R++A ++ Sbjct: 653 YAQAVAVTGRLSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHIS 712 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ L AF G D++ T A F VA QV+ +QR KV+ L Y + +A Sbjct: 713 GDEALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSF---GLAK 769 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ A + ++ ++M+E Sbjct: 770 NLGIETKAAAAYID-----RYFQRYPGVKQYMEET------------------------- 799 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 +A + + + R+ L LP S Sbjct: 800 ------------KARAKARGYVETVFGRR-----------------LYLPEINSPNGPRR 830 Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVL 626 G R+ +N Q + D++ + M ++A K +++ Sbjct: 831 GAAERAAINAPM------------------QGTAADLIKKAMVAVQGELDARKPEVLMIM 872 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P+ + ++ + LM A +PL AE Sbjct: 873 QVHDELVFELPEGEVDWLRREIPRLMAGVA--ALQVPLLAE 911 >gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252] gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252] Length = 924 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 120/694 (17%), Positives = 217/694 (31%), Gaps = 166/694 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLK 58 L ID ET S A ++ AF ++ P L D + + L Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L V N ++ VL +++P + T+V A + Sbjct: 405 PILRRAQ-RKVGQNLKYDLVVLAQH-GVEVPPP-YFDTMVAHYLIAPEEPHNLDVLARQY 461 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 +M ELI G + + D + G Y D + ++ L Sbjct: 462 LRYQMVAITELIG---SGRDQKSMRD-------VSIDEVGPYACEDTDIALQLADVLAAE 511 Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + E L + + G C+D + + + ++ E +L+ ++ + G Sbjct: 512 LDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVA-G 570 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + + ++L LF + GL T T T + VL P + + R A Sbjct: 571 VEFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRHLA- 629 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P P R H +Q +T Sbjct: 630 ------------------------------KLKSTYVDGLEPLIHPETGRIHTTFNQTVT 659 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I +R + G KL+ AD IE R+LA ++G++ Sbjct: 660 ATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T AR F V P QVT +QR K++ + Y A + + Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCS---- 775 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + +++ V+ Sbjct: 776 ----------------------------------------TREAQELIEEYQRAFPGVTR 795 Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 LH+ E+ + G + +RR VP + + + RS+ R Sbjct: 796 ---YLHRVVEEARQKGYVETLLGRRRYVPNINSRNR---------AERSMAERI------ 837 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEI 632 +Q D++ M+ + GY ++L VHDE+ Sbjct: 838 ------------------AVNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDEL 879 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 V E P + L +G+P++ + Sbjct: 880 VFEMPPEEVEPVRQLVEQEMKQALPLEGVPIEVD 913 >gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4] gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4] Length = 971 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 104/694 (14%), Positives = 215/694 (30%), Gaps = 163/694 (23%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65 E S +D G ++ + F++ + PV D + + A E Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRTEAQKIVNEFRPAFEKEG 456 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122 V N ++ VL N + + ++A P + + E + Sbjct: 457 ALKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179 +ELI + +N + +Y D +T ++ LE Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADITLKLKNILEQELKTN 562 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + I G VD ++ ++++E+ L G + Sbjct: 563 DAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621 Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ LF + + T+T T + VL S + ++ +R Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G + P + H +Q +T Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R I +G + AD + IE R++A ++G+ ++AF Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G+D++ T A+ + ++ +VT++QR+ K + Y +A ++ Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L+ E +P+ +K+ + Sbjct: 828 KELIDG----------------YFETYPQ--------------IKEYMDKS--------- 848 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +AR++ + ++ +K LP S N+ Sbjct: 849 --------------IDLARRQGYIETIFGRK------RYLPDINS------------RNS 876 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 R +Q + DI+ M+ ++L VHDE+ Sbjct: 877 VVRGYAERNA-----INAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSV 931 Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 P+ E ++ M + ++ +PL+A+ G+ Sbjct: 932 LPEEKEKVQKIVIEEMEN--AYHMQVPLRADCGW 963 >gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234] gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234] Length = 1040 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 107/631 (16%), Positives = 197/631 (31%), Gaps = 134/631 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V VA N ++ V+K I + + T++++ + + Sbjct: 514 LKNLLEDPSVLKVAQNLKYDYLVMKRH---GIAMQSFDDTMLMSYVVDAGNGM------- 563 Query: 117 KLSSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 M+ E L + + Y D VT ++ Sbjct: 564 ----HGMDSLSERWLGHTPIPYKDIAGTGKASVSFDFVDIDKATTYAAEDADVTLRLWHV 619 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P + E+ L + + +RG VD + L+ + L+ E+ Sbjct: 620 LKPRLAAKGLTRVYERLERPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEIYR 679 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 L G + ++L LF + GL T+T +S + Sbjct: 680 LA-GETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSASVLEDLAAVGHELP------ 732 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R + + ++ P P R H T Sbjct: 733 --------------------RKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTGYALAAT 772 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I +R+ IA+ G KLV AD + IE RVLA +A Sbjct: 773 TTGRLSSSEPNLQNIPVRTAEGRRIRTAFIATPGHKLVSADYSQIELRVLAHVADIPQLR 832 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T + F V + + R K + + Y A +A+ + Sbjct: 833 QAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAF---GLANQLSIER 889 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + E P I D T KA+ ++H V Sbjct: 890 SEAGD----------------YIKRYFERFP--GIRDYMENT------KAFAREHGYVET 925 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 ++ GR Y D+ ++ Sbjct: 926 IF-------------------------------------------GRRAHYPDIRSSNPS 942 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 + + + G + I +A+ + E ++ K ++L VHDE++ E + Sbjct: 943 MRAFNERASINAPIQGSAADIIRRAMVK---MEPALDEAKLAARMLLQVHDELIFEVEEG 999 Query: 640 D-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + E ++ +M + A + PLK + Sbjct: 1000 EIERTLPVIVSVMENAAMPALDMRVPLKVDA 1030 >gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518'] Length = 924 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 120/694 (17%), Positives = 217/694 (31%), Gaps = 166/694 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLK 58 L ID ET S A ++ AF ++ P L D + + L Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L V N ++ VL +++P + T+V A + Sbjct: 405 PILRRAQ-RKVGQNLKYDLVVLAQH-GVEVPPP-YFDTMVAHYLIAPEEPHNLDVLARQY 461 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 +M ELI G + + D + G Y D + ++ L Sbjct: 462 LRYQMVAITELIG---SGRDQKSMRD-------VSIDEVGPYACEDTDIALQLADVLAAE 511 Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + E L + + G C+D + + + ++ E +L+ ++ + G Sbjct: 512 LDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVA-G 570 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + + ++L LF + GL T T T + VL P + + R A Sbjct: 571 VEFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRHLA- 629 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P P R H +Q +T Sbjct: 630 ------------------------------KLKSTYVDGLEPLIHPETGRIHTTFNQTVT 659 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I +R + G KL+ AD IE R+LA ++G++ Sbjct: 660 ATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T AR F V P QVT +QR K++ + Y A + + Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCS---- 775 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + +++ V+ Sbjct: 776 ----------------------------------------TREAQELIEEYQRAFPGVTR 795 Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 LH+ E+ + G + +RR VP + + + RS+ R Sbjct: 796 ---YLHRVVEKARQKGYVETLLGRRRYVPNINSRNR---------AERSMAERI------ 837 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEI 632 +Q D++ M+ + GY ++L VHDE+ Sbjct: 838 ------------------AVNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDEL 879 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 V E P + L +G+P++ + Sbjct: 880 VFEMPPEEVEPVRQLVEQEMKQALPREGVPIEVD 913 >gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 921 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 95/555 (17%), Positives = 172/555 (30%), Gaps = 80/555 (14%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177 E+ + K + + + A G Y + +T + + L+P Sbjct: 467 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + N+ + E + G +++ L + Sbjct: 787 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDV 546 G A K+ V Sbjct: 840 PMQGTAADIIKKAMV 854 >gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] Length = 971 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 92/599 (15%), Positives = 192/599 (32%), Gaps = 85/599 (14%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65 E S +D G ++ + F++ + PV D + + A E Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRAEAQKIVNEFRPAFEKEG 456 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122 V V N ++ VL N + + ++A P + + E + Sbjct: 457 VLKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179 +ELI + +N + +Y D VT ++ LE Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + + G VD ++ ++++E+ L G + Sbjct: 563 DAEKLFYEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621 Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ LF + + T+T T + VL S + ++ +R Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G + P + H +Q +T Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R I +G + AD + IE R++A ++G+ ++AF Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAF 770 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G+D++ T A+ + ++ +VT++QR+ K + Y +A ++ Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L+ + + + + + A +I T R K+ +SR S + Sbjct: 828 KELIDG------YFETYPQIKEYMDKSIDLARGQGYIETIFGR-KRYLPDINSRNSVVRG 880 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + G A K V + + + ++L L + + + + Sbjct: 881 YAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEKV 939 >gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] Length = 971 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 118/645 (18%), Positives = 212/645 (32%), Gaps = 142/645 (22%) Query: 50 DPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 +P LK+ LE+ + + N ++ V+ I + T++++ + Sbjct: 432 GGQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVM---LQHGIAMTPIDDTMLISYALD 488 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 S L G +LS + + C KP EY D Sbjct: 489 ASSGLAGHGMD-ELSERFLGHKPISYKELC------GSGRSAKPIAAVEIDRVTEYASED 541 Query: 165 VTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 VT I++ L+P + E + L + + RG VD + L+ + Sbjct: 542 ADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRGIMVDRQILSRLSGNFAQK 601 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLT 270 + L+ E+ + G + ++L LF + GL T++ T RVL Sbjct: 602 QAALEDEIAKMA-GEEFNPGSPKQLGEILFGKLGLPGGKKTKSGQWSTDARVLEDLAAEG 660 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + + + + ++ +TL M+ +GR+ Sbjct: 661 HELPRRVVDWRQLTKLKGTYTDTLPHHMDENGRI-------------------------- 694 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385 H T +S+P+ I +R+ +A +GKKL+ AD + IE Sbjct: 695 -----HTSFSMASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPKGKKLLSADYSQIE 749 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A AF+ G D++ T + FNV + R K + + Y A Sbjct: 750 LRILAHIADIPQLKDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINFGIIYGISA 809 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 +A+ + +K +E +M + Sbjct: 810 F---GLANQLAIPREEAGQYIK-----RYFERFPGIRDYMDKT----------------- 844 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 KA+ +KH V L+ +R P + K P Sbjct: 845 --KAFAKKHGYVETLF-------------------GRRAHYPDITAKN---------PQI 874 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 RS N R+ +N + G + I +A+ R EG + ++ Sbjct: 875 RSF------NERAAINAPIQ---------GTAADIIRRAMVR---MEGALADANLSAMML 916 Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEG 667 L VHDE+V E + + + +M + P +PL+ E Sbjct: 917 LQVHDELVFEVEEDEIDETIEVVTNIMEAAASPRVILSVPLEVEA 961 >gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter calcoaceticus PHEA-2] Length = 923 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 117/684 (17%), Positives = 214/684 (31%), Gaps = 167/684 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQ 399 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+P E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T ++++N+ + + +P + Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT--DEFNASMLYHLMT 652 E+V E DE + + +M Sbjct: 878 ELVFEADQNIADELS-KQIATVME 900 >gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] Length = 902 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 P +L + + LK LE+ + TI+ N ++ VL + I + Sbjct: 365 GAPAQL----DKEEVLRKLKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417 Query: 99 LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 LA S+ ALK + M + +++ + K + + Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205 Y D VT ++ +L PL KE L + + RG VD A+ Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQ 527 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261 + + L+Q+ L G + ++L+T L+ E L + +T + Sbjct: 528 AQSIELSGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL P + +R ++ Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P Q P R H +Q +T +++P+ I +R IA G ++ Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 676 VAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y + + G+ + + + A Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAQEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R + H+ + +A G A D+ + M K + Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 L +N V+A Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E + D E + M A +PL + Sbjct: 849 ------HLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891 >gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a] gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a] Length = 921 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 94/555 (16%), Positives = 171/555 (30%), Gaps = 80/555 (14%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177 E+ + K + + + A G Y + +T + + L+P Sbjct: 467 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + N+ + E + G +++ L + Sbjct: 787 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDV 546 G A K+ V Sbjct: 840 PMQGTAADIIKKAMV 854 >gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2] gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2] Length = 940 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 108/628 (17%), Positives = 190/628 (30%), Gaps = 98/628 (15%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---------- 50 M + D ET S +DL G ++ +F +D+ H+ Sbjct: 362 MDWVAFDTETDS-LDLF-AG--------RIVGVSFSIEDNRAAYVPLAHNYPGAPAQLDR 411 Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 + LK LE+ T V N+ F+ +L N I + + +L L Sbjct: 412 DTVLADLKPWLEDASRTKVMQNAKFDSHMLA---NHGITLRGVLFDTMLESYV-----LD 463 Query: 111 AVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + S + G+ I E + G Y D VT Sbjct: 464 STATRHDMDSLAAKYLGRSTITF----EDIAGKGAKALSFPEIHLEQAGPYAAEDADVTG 519 Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + L P + EQ L + + G VD + + ER Sbjct: 520 QLQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAGVRVDRGELAIQGKAIG-ERIAA 578 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274 ++ G + ++LK LF E L + T T + L P Sbjct: 579 VEQAAFKEAGREFNLGSTKQLKELLFDELKLPVGKKTPKGEPSTDEEALGELVGSHPLPA 638 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + G S+ P R Sbjct: 639 LIL-------------------------------DYRGLSKLKSTYIDRLPEDIHTHTGR 667 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q +T +S+P+ I +R +A G KL+ AD + IE R++ Sbjct: 668 VHSAFHQAVTATGRLSSSNPNLQNIPIRSEEGRRIRQAFVADPGCKLISADYSQIELRIM 727 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ ++ AF GED++ T A F V +V+ +QR K + L Y A Sbjct: 728 AHLSEDERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINFGLIYGMSAF--- 784 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A + + A + + M++ + + G Sbjct: 785 GLAKQLDVPRGEAQAYIDLYFAR--YPGVAKYMERMRQQARQMGYVETVFGRRL-----Y 837 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + HSR + + G A K + L + ++L L+ Sbjct: 838 LPEIHSRNGQRRQYAERTAINAPMQGTAADIIKIAMIALHKLLVVPGRARMILQVHDELI 897 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + ++ + + R + T KL Sbjct: 898 FEVPESDVAEIEPIIR---AQMTGAAKL 922 >gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z] gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z] Length = 956 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 93/628 (14%), Positives = 185/628 (29%), Gaps = 133/628 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEA 115 LK LEN D+ + N ++ T+ N I + +L + A Sbjct: 435 LKPVLENADIRKIGQNLKYDLTI---FANHGIQVQGVAFDTMLESYVLNSTGRHNMDDLA 491 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + + L + T + + + + E L Sbjct: 492 ERYLGHQTISFETLAGKGKNQLTFDKIPLAQAAEYAAEDADVTMKLHQTLWAELEKTPTL 551 Query: 176 EPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L E L + I G +D +Q T L+ + + G + Sbjct: 552 TTLFKDIELPLVSVLSRIERNGVLIDAQALRKQSQEFGERLTALEAKAHEIA-GEAFNLA 610 Query: 235 CLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L+ LF + L + +T + VL + +R Sbjct: 611 SPKQLQEILFNKLHLPVLQKTPKGDPSTKEEVLEELAFDHELPKLLVEHR---------- 660 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 G ++ P P R H Q +T Sbjct: 661 ---------------------GLAKLKSTYTDKLPQMINPHTGRVHTSYHQAVTATGRLS 699 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++DP+ I +R +A +G +++ AD + IE R++A ++G++ AF G Sbjct: 700 STDPNLQNIPIRNEEGRRIRQAFVARDGYRIIAADYSQIELRIMAHLSGDKGLTTAFVEG 759 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ +T + F + V+ +QR K + L Y A ++ ++ Sbjct: 760 RDIHRSTASEIFGIPLEDVSAEQRRSAKAINFGLIYGMSAF---GLSRQLAISRMEAKKY 816 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + Q++ V +++ Sbjct: 817 MDLYF-----------------------------------------QRYPNVQTFMHDIQ 835 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + + + +R +P + SG + R G R +N Sbjct: 836 EKAKA--QGFVETLFGRRLYLPDIK-------------SGNAS--RRKGAERVAINAPM- 877 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----IVLTVHDEIVCET-PDT 639 Q + DI+ M++ +++ VHDE+V E + Sbjct: 878 -----------------QGTAADIIKRAMIDIDHVIAGDEDILMIMQVHDELVFEVRSEK 920 Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEG 667 EF + ++ M + +PL E Sbjct: 921 VEFYSELIKQKMETAAQ--LDVPLIVEA 946 >gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83] gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83] Length = 1004 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 112/654 (17%), Positives = 198/654 (30%), Gaps = 144/654 (22%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 PV+ V + + LKE LE+ V V N + V+K I + + T+ Sbjct: 461 GGGPVDSQVPVREAL--SRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTM 515 Query: 98 VLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 +++ A A + K++ + Sbjct: 516 LMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDV----------TGTGRSSLTFDFVDIDK 565 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHT 206 Y D + ++ L+P + E+ L + + +RG VD + Sbjct: 566 ATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSR 625 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262 L+ + L+ E+ L G + ++L LF + GL T+T T +V Sbjct: 626 LSGELAQGAAALEDEIYRLA-GETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQV 684 Query: 263 LSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L ++ + R ++ Sbjct: 685 LEDLAAAGHDLPRKIVDWRQL-------------------------------TKLKSTYT 713 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P P R H T +SDP+ I +R+ +A+ G KL Sbjct: 714 DALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKL 773 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + IE RVLA +A +AF G D++ T + F V + + R K + Sbjct: 774 VSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAIN 833 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A +A+ + + + + E P Sbjct: 834 FGIIYGISAF---GLANQLSIERSEAGD----------------YIKRYFERFP------ 868 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 R + +TI +A R Sbjct: 869 ------------GIRDYMENTKAF--ARENGYVETIFGRRAHYPDIRSSN---------- 904 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 PS R+ N R+ +N + G + I +A+ + E + Sbjct: 905 ------PSMRAF------NERASINAPIQ---------GSAADIIRRAMVK---MEPALE 940 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 A K ++L VHDE++ E D + E ++ +M + A + PLK + Sbjct: 941 AAKLSARMLLQVHDELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDA 994 >gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] Length = 971 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 105/694 (15%), Positives = 215/694 (30%), Gaps = 163/694 (23%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTD 65 E S +D G ++ + F++ + PV D + + A E Sbjct: 399 EIFS-LDTETTGTDPITAELVGMSFSYAENQAFYVPVPA-DRTEAQKIVNEFRPAFEKEG 456 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK 122 V N ++ VL N + + ++A P + + E + Sbjct: 457 ALKVGQNIKYDMLVLG---NYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQ 511 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--- 179 +ELI + +N + +Y D VT ++ LE Sbjct: 512 TIHIEELIG-------PKGKGQKNMRDLSP--EAIYKYACEDADVTLKLKNILEQELKTN 562 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + I G VD ++ ++++E+ L G + Sbjct: 563 DAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLA-GTDFN 621 Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ LF + + T+T T + VL S + ++ +R Sbjct: 622 IASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR------- 674 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G + P + H +Q +T Sbjct: 675 ------------------------GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATG 710 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R I +G + AD + IE R++A ++G+ ++AF Sbjct: 711 RLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAF 770 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + G+D++ T A+ + ++ +VT++QR+ K + Y +A ++ Sbjct: 771 KEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF---GLAERMNVDRKEA 827 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L+ E +P+ +K+ + Sbjct: 828 KELIDG----------------YFETYPQ--------------IKEYMDKS--------- 848 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +AR++ + ++ +K LP S N+ Sbjct: 849 --------------IDLARRQGYIETIFGRK------RYLPDINS------------RNS 876 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 R +Q + DI+ M+ ++L VHDE+ Sbjct: 877 VVRGYAERNA-----INAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSV 931 Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 P+ E ++ M + ++ +PL+A+ G+ Sbjct: 932 LPEEKEKVQKIVIEEMEN--AYHMQVPLRADCGW 963 >gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] Length = 921 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 86/539 (15%), Positives = 171/539 (31%), Gaps = 77/539 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAV 112 LK LE+ ++ V N ++ +VL + + +L + + + Sbjct: 395 DALKPILEDDNLKKVGQNLKYDMSVLAEDVGITL--RGVAYDTMLESYVLDSVATRHDMD 452 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 ALK +K +E+ + K T + Y D VT + Sbjct: 453 SLALKYLGRKTISFEEIAGKGAKQLTFNQV----------GLHEASRYAAEDADVTLRLH 502 Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P KE L + I G VD L +Q + +L ++ Sbjct: 503 QTLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQEK 562 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 + G + ++L L+ + + + T T + VL P Sbjct: 563 ACEIA-GQEFNLSSPKQLGEILYQKLEIPVIKKTPKGAPSTAEAVLQELALEYPLP---- 617 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + + + G ++ P R R H Sbjct: 618 ---------------------------QVIMDYRGVAKLKNTYTDKLPELINQRTGRVHT 650 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + +SDP+ I +R +A +G+K+V D + IE R++A + Sbjct: 651 SYHQAVAATGRLSSSDPNLQNIPVRSEEGRKIRQAFLAPKGRKIVACDYSQIELRIMAHL 710 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ AFE G D++ T A + +V+ + R K + L Y A +A Sbjct: 711 SDDKGLTDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAF---GLA 767 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 GL + E + + + + ++ + G + Sbjct: 768 KQLGLPRKEAQEYID--LYFERYPGVKKYMADTRALAADNGYVETVYGRRL-----YLPE 820 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570 HS+ + +A G A K+ + + +++ + +++ LV+ Sbjct: 821 IHSKNGQRRQAAERAAINAPMQGTAADIIKKAMIKVHDWLETTDFDAKMIMQVHDELVF 879 >gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4] gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4] Length = 949 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 91/605 (15%), Positives = 183/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ D + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D VT ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + ++++E+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + + + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168] gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168] Length = 870 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 106/624 (16%), Positives = 187/624 (29%), Gaps = 158/624 (25%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-----LPSAL 109 +LK L + V NS LK DI + + +LA LP Sbjct: 359 SILKPILTDISVKKYILNSKECTVFLKKH---DIELEGLVFDPLLAYYLLKPSGKLPGLR 415 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + L LS + + L F +F Sbjct: 416 DLLDQELSLSLPEDIKEDNLYLVFMDN-------------------IFKLAEGM--VPKL 454 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + +E + E L + + G VD +L++ + E L+ ++ L G Sbjct: 455 EDMELIELFNDIEIPLITVLAELEYNGIKVDAEYLESLSRKWEEELNGLESKIHELA-GE 513 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF + GL + T+T +VL + P + R Sbjct: 514 KFNINSPKQLGGILFEKLGLPVIKKTKTGYSTGAKVLEKLEDKHPIIPLISEYRQLM--- 570 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + PP P R H +Q++T Sbjct: 571 ----------------------------KLKSTYVDALPPMINPDTGRLHTSFNQMVTAT 602 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R I E L+ AD + IE RVLA ++ ++ Sbjct: 603 GRLSSTEPNLQNIPVRTDEGREIRRAFITENEDWVLLAADYSQIELRVLAHISDDEGLKA 662 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF TG+D++ T + F V P +VT + R KV+ + Y +A G++ Sbjct: 663 AFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVINFGIAYGMSPY---GLARDLGISRQ 719 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + R + + Sbjct: 720 EASDYIN--------------------------------------------KYFERFTGV 735 Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + + G I +RR +P + + RS R+ Sbjct: 736 KDYMERVVTEAKTKGYVTTIFNRRRYIPEINSRNYHR---------RSFA------ERTA 780 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633 +NT +Q + DI+ M+ I+L VHDE++ Sbjct: 781 INTP------------------IQGTAADIMKLAMIKVYNRLKENGSPARILLQVHDELI 822 Query: 634 CETPDTDEFNASMLYH-LMTSNPS 656 E P D + + M Sbjct: 823 LEVPREDLTEMARIVKSEMEKAVD 846 >gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] Length = 976 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 109/693 (15%), Positives = 202/693 (29%), Gaps = 168/693 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------- 56 +D ET S + D ++ + +L+ + + Sbjct: 384 SLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQIKKETPNQLSIE 433 Query: 57 -----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 L+ +E+ NS F+R + FN + + +LA Sbjct: 434 DVFSKLRTWIEDPKKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN------ 484 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E + F K + + +NK YC DV +T +I Sbjct: 485 -----NQEKHGLSEISFRLFGF-KPPSFKETVGKNKDFSFVDINEASIYCGYDVFLTFKI 538 Query: 172 FKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 K + E L + + G +D+ L++ + ++ Sbjct: 539 VKIFKERFSKEKDELIKLFKEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIE 598 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274 ++ L + ++L LF + L + +T T VL Sbjct: 599 NKVFELAD-ENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDALVLERLVDEHEIIQ 657 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ P + R Sbjct: 658 HLIKHR-------------------------------TISKLLSTYIDALPNLINEKTGR 686 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q T +S+P+ I S +R + + KL+ AD + IE R+L Sbjct: 687 VHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F +++ D+R +GK + + Y G + Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IK 801 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 K A +TG++ + E + F E A+ ++ T R ++ Sbjct: 802 KFARSTGVSTPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE- 854 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 K DKN L ++ Sbjct: 855 -----------------------------------------FKFDKNGLGRLIGKDPY-- 871 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG----- 621 + R L +Q S DI+ M+ K Sbjct: 872 -----------EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNF 920 Query: 622 -YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 ++L VHDE++ E PD+ E ++ M Sbjct: 921 PAKMLLQVHDELLFEVEPDSLEITTKLVKKTME 953 >gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476] gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476] Length = 968 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 106/630 (16%), Positives = 207/630 (32%), Gaps = 146/630 (23%) Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118 E++ V + N ++ V+K DI I + T++L+ + L + + E + Sbjct: 447 EDSAVLKIGQNIKYDWLVVKQY---DIVIRSFDDTMLLSYALDAGALTHNMDDLSE--RW 501 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K K+L K + + + Y D +T +++ L+P Sbjct: 502 LEHKPIAYKDLTHNGKKITS----------FAQVDLKQATLYAAEDADITLRLWQVLKPQ 551 Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++ L + + +RG VD + L+ + L++E+ Sbjct: 552 LVARGMTKIYERLDRPLVEVLARMEERGILVDRQILLRLSGELAQAALILEEEIYKQAD- 610 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN-KKLTPQAIQVFNNRMRA 283 + ++L LF + GL T+ +T + L + ++ R A Sbjct: 611 EKFNLASPKQLGDILFDKMGLPGGAKTKGGQWSTSAQTLEELSAEGHTLPRKIIEWRQLA 670 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + P LP+ R H I Sbjct: 671 -------------------------------KLKSTYADALPSYILPKTGRVHTNYSLAI 699 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +S+P+ I +R+ IA +G L+ AD + IE R+LA +A + Sbjct: 700 TSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKAL 759 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF G D++ T ++ F VA + D R K + + Y A +A+ G++ Sbjct: 760 KEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAF---GLANQLGIS 816 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++A + + E P I+D E+ K R Sbjct: 817 R----------------QEAGRYIQLYFERFP--GIKDYM-----EKTKSFAR------- 846 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + +TI GR + Y ++ Sbjct: 847 ------ENGYVETIF-------------------------------GRRIHYPEIKAKNV 869 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + + + G + I +A+ I E + ++L VHDE++ E P+ Sbjct: 870 KIRSLNERAAINAPIQGSAADIIRRAM---IQMEDALKEENLSAKMLLQVHDELIFEVPE 926 Query: 639 TDE-FNASMLYHLM--TSNPSWAKGLPLKA 665 + +++ +M + P + +PL+ Sbjct: 927 EESKKTMAVVKDVMENATMPVLSLSVPLEV 956 >gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021] gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021] Length = 1004 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 111/654 (16%), Positives = 196/654 (29%), Gaps = 144/654 (22%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 PV+ + LKE LE+ V V N + V+K I + + T+ Sbjct: 461 GGGPVDS-QVPGRETL-SRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTM 515 Query: 98 VLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 +++ A A + K++ + Sbjct: 516 LMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDV----------TGTGRSSLTFDFVDIDK 565 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHT 206 Y D + ++ L+P + E+ L + + +RG VD + Sbjct: 566 ATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSR 625 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262 L+ + L+ E+ L G + ++L LF + GL T+T T +V Sbjct: 626 LSGELAQGAAALEDEIYRLA-GETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQV 684 Query: 263 LSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L ++ + R ++ Sbjct: 685 LEDLAAAGHDLPRKIVDWRQL-------------------------------TKLKSTYT 713 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P P R H T +SDP+ I +R+ +A+ G KL Sbjct: 714 DALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKL 773 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + IE RVLA +A +AF G D++ T + F V + + R K + Sbjct: 774 VSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAIN 833 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A +A+ + + + + E P Sbjct: 834 FGIIYGISAF---GLANQLSIERSEAGD----------------YIKRYFERFP------ 868 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 R + +TI +A R Sbjct: 869 ------------GIRDYMENTKAF--ARENGYVETIFGRRAHYPDIRSSN---------- 904 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 PS R+ N R+ +N + G + I +A+ + E + Sbjct: 905 ------PSMRAF------NERASINAPIQ---------GSAADIIRRAMVK---MEPALE 940 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 A K ++L VHDE++ E D + E ++ +M + A + PLK + Sbjct: 941 AAKLSARMLLQVHDELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDA 994 >gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642] Length = 921 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 93/555 (16%), Positives = 171/555 (30%), Gaps = 80/555 (14%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177 ++ + K + + + A G Y + +T + + L+P Sbjct: 467 DIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + N+ + E + G +++ L + Sbjct: 787 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDV 546 G A K+ V Sbjct: 840 PMQGTAADIIKKAMV 854 >gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4] gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4] Length = 793 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 110/642 (17%), Positives = 195/642 (30%), Gaps = 154/642 (23%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE- 114 +LK LE+ V +A N ++ V+ + + + T++L+ + + E Sbjct: 266 ILKPMLEDPAVLKIAQNLKYDWLVMTHY---GVNVTSYDDTMLLSYTVDAGKGGNGMDEL 322 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K KE+ C +D+ Y D VT +++ Sbjct: 323 SERWLGHKPIPFKEV----CGSGKSMITFDK------VPLDKATAYAAEDADVTLRLWQV 372 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P + E+ + + + RG VD + L+ L+ E+ Sbjct: 373 LKPRLASDRMATVYETLERPMVPVLARMEQRGIAVDRQMLSRLSGDFAQGMAGLEAEIHE 432 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF + GL T+T T VL ++ Sbjct: 433 LA-GESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSASVLEDLAAEGHTLPSKIVEW 491 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P P R H Sbjct: 492 RQL-------------------------------SKLKSTYSDALPGYIHPDTKRVHTSY 520 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T +S+P+ I +R +A +G KL+ AD + IE RVLA MA Sbjct: 521 ALAATTTGRLSSSEPNLQNIPVRTAAGRKIRQAFVAEKGMKLISADYSQIELRVLAHMAD 580 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 KAFE G D++ T + F + R K + + Y A +A+ Sbjct: 581 IPQLKKAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAF---GLAAQ 637 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A ++ + E P +K+ Sbjct: 638 LGISRGE----------------ASDYIKTYFERFP--------------GIKEYMEATK 667 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +V I RK + P+ R+ Sbjct: 668 KQV------------HATGYVTTIFGRKAHYPDVNTKN----------PNMRNFY----- 700 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 R+ +N +Q + DIL M+ K ++L V Sbjct: 701 -ERAAINAP------------------IQGSAADILRRAMVRMEDRLLSSKLDAQMLLQV 741 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667 HDE++ E P+ + ++ +M + P +PL+ + Sbjct: 742 HDELIFEVPEVQVDATIPLIKDVMENACDPVLKLSVPLQVDA 783 >gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] Length = 902 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 111/651 (17%), Positives = 199/651 (30%), Gaps = 147/651 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 P +L + + LK LE+ + TI+ N ++ VL + I + Sbjct: 365 GAPAQL----DKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAK---EGLTIRAKTYDTL 417 Query: 99 LARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 LA S+ ALK + M + +++ + K + + Sbjct: 418 LASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVT----------LDK 467 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAH 205 Y D VT ++ +L PL KE L + + RG VD A+ Sbjct: 468 ATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQ 527 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQR 261 + + L+Q+ L G + ++L+T L+ E L + +T + Sbjct: 528 AQSIELGGRIALLEQQAYKLA-GREFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAEN 586 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL P + +R ++ Sbjct: 587 VLQDLALDYPLPKVILEHRSL-------------------------------TKLKTTYT 615 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P Q P R H +Q +T +++P+ I +R IA G ++ Sbjct: 616 DRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQM 675 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + +E R++A ++ + +KAF+ D++ T A F V QVT +QR K + Sbjct: 676 VAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAIN 735 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y + + G+ + + + A Sbjct: 736 FGLLYGMSSF---GLGRQLGIGRDLAQEYIDIYFKRYPK------VHEYMQKIRIVAFTQ 786 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R + H+ + +A G A D+ + M K + Sbjct: 787 GYVETLFGR-RVYLPDIHASNMQRRRAAERAAINAPMQGTAA------DIIKIAMIKVSD 839 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 L +N V+A Sbjct: 840 W---------------------------------------LQKNPVEA------------ 848 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E + D E + M A +PL + Sbjct: 849 ------HLIMQVHDELVFEMAEKDLEKVIPQIKKAMEEAV--ALSVPLVVD 891 >gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7] Length = 921 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 93/555 (16%), Positives = 170/555 (30%), Gaps = 80/555 (14%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPEKIKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + K + + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTAPRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177 E+ + K + + + A G Y + +T + + L+P Sbjct: 467 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + N+ + E + G +++ L + Sbjct: 787 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDV 546 G A K+ V Sbjct: 840 PMQGTAADIIKKAMV 854 >gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CNPAF512] Length = 997 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 111/649 (17%), Positives = 200/649 (30%), Gaps = 157/649 (24%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL 109 +P+ LK LE+ V VA N ++ +LK I + T++++ A Sbjct: 464 DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAH 519 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + K K++ N Y D VT Sbjct: 520 GMDPLSEKFLGHTPIPYKDVA----------GSGRANVTFDLVDIDRATHYAAEDADVTL 569 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ L+P + E+ L + + RG VD + L+ + +L+ Sbjct: 570 RLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLE 629 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274 E+ +L G + ++L LF + GL T+T T VL Sbjct: 630 DEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 688 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ + R ++ P P R Sbjct: 689 KIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETKR 717 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H T +S+P+ I +R+ I++ G KL+ AD + IE RVL Sbjct: 718 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 777 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A KAFE G D++ T + F V + + R K + + Y A Sbjct: 778 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF--- 834 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A+ + + +K ++ + R E+ A + ++ T Sbjct: 835 GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG----- 883 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +R + P + PS R+ Sbjct: 884 --------------------------------RRINYPEIRSSN---------PSVRAF- 901 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------- 622 N R+ +N +Q + D++ M+ A Sbjct: 902 -----NERAAINAP------------------IQGSAADVIRRAMIKIEPALAEAGLAER 938 Query: 623 -DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++L VHDE++ E D D + ++ +M + A + PLK + Sbjct: 939 VRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDA 987 >gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15] Length = 868 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 102/560 (18%), Positives = 187/560 (33%), Gaps = 82/560 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENT 64 D + +Y D ++ +F HD + LK LEN Sbjct: 295 DTETTSL-RYM-DAEIVGVSFAVKPGEAAYVPLGHDYMGAPEQLDRDQVLDQLKPLLENP 352 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 D+ V N +++ VL N I + +L N + + A+ +K Sbjct: 353 DLAKVGQNLKYDKNVLA---NHGITLEGIAEDTMLESYVLNSVATRHDMDSLAMYYLGEK 409 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 + + + K T + Y D +T + + L P Sbjct: 410 TTSFESIAGKGAKQLTFNQI----------DLEKAAPYAAEDADITLRLHQTLRPKLKET 459 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + RG + + +Q + +L++E + G Sbjct: 460 GKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEKEAHEVA-GETF 518 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L+ + + GL + + ++ S + +P Sbjct: 519 NLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCFRNSP-------------------- 558 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++ R L+ S+ P R R H Q +T + Sbjct: 559 --------TNTNCRVILEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSS 610 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S+P+ I +R IA EG KLV AD + IE R++A ++G++ LKAFE GE Sbjct: 611 SEPNLQNIPIRSEQGRRIRQAFIAPEGYKLVAADYSQIELRIMAHLSGDKGLLKAFEKGE 670 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T + F V+ V+ DQR K + L Y A ++ + + Sbjct: 671 DIHKATASEVFGVSLDDVSSDQRRSAKAINFGLIYGMSAF---GLSRQLDVERKLAQEYI 727 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 +E ++M +N + A +D F+ T R + + ++R +L + Sbjct: 728 D-----RYFERYPGVLKYM-DNIRKQAHDDGFVETLFGR-RLYLPEINARNKQLQQAAER 780 Query: 527 AFEQTIENGKAIIARKRRDV 546 G A KR V Sbjct: 781 TAINAPMQGTAADIIKRAMV 800 >gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 942 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 115/680 (16%), Positives = 208/680 (30%), Gaps = 172/680 (25%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEA-----LENTD 65 +D + +A ++ + H + + + L A LE+ Sbjct: 371 VDTETTSLDAFA--AELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLARMKSWLESAT 428 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKLSSQK 122 V N ++ + N I + + +L + LP + ++ E Sbjct: 429 HLKVGQNLKYDSHI---FANYGITLKGVVFDTLLESYVLESHLPHNMDSLAERH------ 479 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 G + I C H+ +D + ++ +Y D +T + L P Sbjct: 480 --LGMKTIRYEEVCGKGVHQIGFD------QVDLKIATDYAAEDADITLRLHLELWPQIQ 531 Query: 181 KEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + L Y+ + + G +D AL Q V +L+ E+ L G Sbjct: 532 ESPGLLYVYEKVEMPAMRVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEIHKLA-GQ 590 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + + +++ LF + L + T + T + VL + P ++ + R A Sbjct: 591 PFNIQSPKQIAEILFGQLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPARILDYRSLA-- 648 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + P P+ R H Q Sbjct: 649 -----------------------------KLMSTYIEKLPRMADPKTGRVHTNFSQATAV 679 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R I +EG KL+ AD + IE R++A +A ++ L Sbjct: 680 TGRLASSDPNLQNIPVRTEEGRRIREAFIPAEGCKLLSADYSQIELRIMAHIAEDENLLT 739 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F V V+ +QR KV+ L Y A +A G+ + Sbjct: 740 AFRDGKDVHQATAAEIFGVPLDDVSSEQRRYAKVINFGLIYGMSAF---GLAGNLGIECS 796 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + R + Sbjct: 797 AAQNYIA--------------------------------------------KYFDRYPGV 812 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSY 579 + + + ENG RR L P + R G R+ Sbjct: 813 AQYMERTRLEARENGYVETVFGRR---------------LWSPEIKGSNGPRRQGAERAA 857 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 +N Q + D++ M+ + ++L VHDE+V Sbjct: 858 INAPM------------------QGTAADLIKLAMIAVEDWFEKEQLKTKMLLQVHDELV 899 Query: 634 CETP-DTDEFNASMLYHLMT 652 + P D E + L +LM Sbjct: 900 FDVPLDEIELLQAKLPNLMC 919 >gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] Length = 948 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 98/584 (16%), Positives = 197/584 (33%), Gaps = 84/584 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVA 70 D GI A + ++ +F F+ + V+ K E+ + + Sbjct: 379 DTETTGID--ALNAQLVGMSFSFEKGKAFYVPFPENQEDAQVLADKFKPFFESESIEKIG 436 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ +L + I + ++A P + + ++L Sbjct: 437 QNIKYDLKILSHY---GVQIKGKLFDTMIAHYLINPDMRHNMDVLSETYLKYSPKSIEDL 493 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181 I + K + + EY D +T ++ + P+ K Sbjct: 494 IGKKGKNQKS---------MRDVSLEEIKEYAAEDADITYQLKQNFSPILDKAETKKLFE 544 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +DV +++ + +E L+Q++ T G + ++L Sbjct: 545 EIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKIYE-TAGEKFNLASPKQL 603 Query: 240 KTWLFLET--GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 LF + G + T+T T + +LS P + R Sbjct: 604 GDVLFDKMKIGGAKQKKTKTGQYATGEEILSYLANDNPIVKDILEWRQ------------ 651 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + P Q + R H + Q + +++ Sbjct: 652 -------------------MVKLQSTYIDALPNQVDKKTGRVHTDYMQTVAATGRLSSNN 692 Query: 354 PDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R I E L+ AD + IE R++A ++GE+ + AF+ +D Sbjct: 693 PNLQNIPVRTERGRLIRKAFIPRNENYTLISADYSQIELRIIAALSGEENMIAAFQNNQD 752 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ +T A+ FNVA VTK+QR+ K + + Y A +++ T L+ A L+ Sbjct: 753 IHKSTAAKVFNVALEDVTKEQRSNAKTVNFGIIYGVSAF---GLSNQTSLSRKESAELID 809 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 A + N + A E+ ++ T R ++ + +S + + + Sbjct: 810 AYYATYPK------LKSYMSNQVDFARENGYVQTVLGR-RRYLKDINSANMMVKSGAERN 862 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 G A K + + +N ++L LV+ Sbjct: 863 AVNAPIQGSAADIIKIAMINIHKKLTQENWQSKMLLQVHDELVF 906 >gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC] gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC] Length = 921 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 119/699 (17%), Positives = 217/699 (31%), Gaps = 175/699 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---- 60 ID ET S +L ++ +F + H P P L A Sbjct: 349 IDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVLA 398 Query: 61 -----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 LE+ + + ++R V N I + + T++ + + Sbjct: 399 RLKPWLEDPKHPKLGQHVKYDRHV---FANHGIEVRGYVHDTMLQSYVLEVHKPHGLASL 455 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + + ++L + K P + Y D T ++ + Sbjct: 456 AERHTGRTGISYEDLCGKGAKQ----------IPFSQVPVDKAAAYSCEDSDQTLDVHRV 505 Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L P +++L + L+ I G +D + + +L+QE Sbjct: 506 LWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQEAYD 565 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + G + ++L F + G+ + T T T + VL + P ++ +R Sbjct: 566 IA-GQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 624 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 +L L + T + + PR R H Sbjct: 625 --------------------------SLSKLKGTYTDKLAQLA-----DPRTGRVHTHYA 653 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + ++DP+ I VR +A G+ + D + IE R++A ++G+ Sbjct: 654 QAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF G D++ T A F VA QVT +QR KV+ L Y + +A Sbjct: 714 EALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSY---GLAKNL 770 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + + Sbjct: 771 GIDNTAAKNYID--------------------------------------------RYFQ 786 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVG 574 R +W + Q G RR L LP S R Sbjct: 787 RYPGVWQYMQDTKAQAKARGYVETVFGRR---------------LYLPEINSPNGPRRSA 831 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628 R+ +N Q + D++ + M+ A +++ V Sbjct: 832 AERAAINAPM------------------QGTAADLIKKAMVQVQDALDAAKPEVLMIMQV 873 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P+ D ++ + + +M +PL AE Sbjct: 874 HDELVFELPEGDVDWLRAEVPRIMAGVAE--LKVPLLAE 910 >gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] Length = 924 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 109/666 (16%), Positives = 203/666 (30%), Gaps = 165/666 (24%) Query: 28 VCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENTDVTIVAHNSYFER 77 ++ +F +HD +P+ LK LEN + + ++R Sbjct: 360 AEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEVLAKLKGWLENPAKKKLGQHVKYDR 419 Query: 78 TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 V N I + + T++ + + A + +K ++L + K Sbjct: 420 HV---FANHGIEVQGYVHDTMLQSYVLEVHKPHGLASLAERHLGRKGINYEDLCGKGAKQ 476 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL-------WYLD 189 P + + EY D T ++ + L P K+ + + L+ Sbjct: 477 ----------IPFSQVSIDKAAEYSCEDSDQTLDVHRTLWPRLEKDAQEGGKLRFIYELE 526 Query: 190 Q-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 I G +D + + +L+QE L G + +++ Sbjct: 527 IASSETLYRIERNGVLIDAPTLAQQSHELGQRILQLEQEAYELA-GQPFNLGSPKQIGEI 585 Query: 243 LFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 F + GL + T T T + VL P ++ +R Sbjct: 586 FFGKLGLPIVKKTATGAPSTDEEVLEKLADDYPLPAKILEHR------------------ 627 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 G S+ LP R H Q + ++DP+ Sbjct: 628 -------------GLSKLKGTYTDKLAQMALPGTGRVHTHYAQAVAVTGRLSSNDPNLQN 674 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I VR IA G + AD + IE R++A ++G+ L AF G D++ T Sbjct: 675 IPIRTPEGRRVREAFIAPPGCLIASADYSQIELRIMAHLSGDAALLLAFHDGMDVHRATA 734 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V + VT +QR K + L Y + +A + G++ + + E Sbjct: 735 SEVFGVPTSAVTSEQRRYAKTINFGLIYGMSSY---GLAKSLGIDNTAAKNYI------E 785 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + D + + A ++ T R R ++ Sbjct: 786 RYFDRFAGVKRYMDETRASAKAKGYVETVFGR-----RLYLPEINS-------------- 826 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 P+G R G R+ +N Sbjct: 827 -----------------------------PNG----PRRGGAERAAINAPM--------- 844 Query: 594 GGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASM 646 Q + D++ M ++A +++ VHDE+V E P+ + ++ Sbjct: 845 ---------QGTAADLIKLSMNAVQRVLDAEGRKTKMIMQVHDELVFEVPENEVDWLKRE 895 Query: 647 LYHLMT 652 + LM Sbjct: 896 VPKLMA 901 >gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C] gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C] Length = 1004 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 112/654 (17%), Positives = 198/654 (30%), Gaps = 144/654 (22%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 PV+ V + + LKE LE+ V V N + V+K I + + T+ Sbjct: 461 GGGPVDSQVPVRETL--SRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTM 515 Query: 98 VLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156 +++ A A + K++ + Sbjct: 516 LMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDV----------TGTGRSSLTFDFVDIDK 565 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHT 206 Y D + ++ L+P + E+ L + + +RG VD + Sbjct: 566 ATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSR 625 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262 L+ + L+ E+ L G + ++L LF + GL T+T T +V Sbjct: 626 LSGELAQGAAALEDEIYRLA-GETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQV 684 Query: 263 LSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 L ++ + R ++ Sbjct: 685 LEDLAAAGHDLPRKIVDWRQL-------------------------------TKLKSTYT 713 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P P R H T +SDP+ I +R+ +A+ G KL Sbjct: 714 DALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKL 773 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + IE RVLA +A +AF G D++ T + F V + + R K + Sbjct: 774 VSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAIN 833 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A +A+ + + + + E P Sbjct: 834 FGIIYGISAF---GLANQLSIERSEAGD----------------YIKRYFERFP------ 868 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 R + +TI +A R Sbjct: 869 ------------GIRDYMENTKAF--ARENGYVETIFGRRAHYPDIRSSN---------- 904 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 PS R+ N R+ +N + G + I +A+ + E + Sbjct: 905 ------PSMRAF------NERASINAPIQ---------GSAADIIRRAMVK---MEPALE 940 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 A K ++L VHDE++ E D + E ++ +M + A + PLK + Sbjct: 941 AAKLSARMLLQVHDELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDA 994 >gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] Length = 949 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 91/605 (15%), Positives = 182/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ D + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQ---NYGATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D VT ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----VYLYACEDADVTLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + ++++E+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + + + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068] gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068] Length = 966 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 119/702 (16%), Positives = 221/702 (31%), Gaps = 170/702 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-- 60 +L ID ET S ++AE ++ ++F + D + +A Sbjct: 382 SLVIDTETTSVQP-------RWAE---IVGYSFCYRDGEAWYLPIRAPENEQALCLDATA 431 Query: 61 --------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110 LE+ + V N ++ VL+ + I + ++A P + Sbjct: 432 VADLFRPVLEDPAIAKVGQNIKYDMVVLR---SAGIELRGAAFDTMVADYLIDPGERSHN 488 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A + + E + LI G + + P +Y D V Sbjct: 489 LDELARRHLGHQNIEIESLI-----GTGKKQIRMDQVP-----LAAITDYAAEDALVPYR 538 Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + LEP + E L + + RG VD A L+ + T L+ Sbjct: 539 LLPILEPRLEQDGLVPLFRDLEMPLVEVLAELEHRGIKVDRARLVELSTDFSTKITALEN 598 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277 E+ ++ +G + +L LF + L + T+T VL +L +V Sbjct: 599 EIYAINHG-EFNIDSRLQLAKLLFEDLKLPILKKTKTGPSMDAEVLEDLARLHELPKKVL 657 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R A + P R H Sbjct: 658 EYRHLA-------------------------------KLRSTYVDSLQELIHPVTGRVHT 686 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 L Q + + DP+ I +RS EG KL+ AD + IE RVLA Sbjct: 687 SLKQDVAATGRLSSQDPNLQNIPVRTAEGRAIRSAFQPGIEGWKLMAADYSQIELRVLAH 746 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +G+ +AF + D++ ++ + VAP VT + R K + + Y + Sbjct: 747 FSGDAALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSAKAINFGVIYGQSPF---GL 803 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A + G+ + A + A ++ ++F R + ++ T R + Sbjct: 804 ARSLGIENDEAAAFISAYFA--QYPGVDDFMRETLIGCRKQG----YVTTIAGRRRP--- 854 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + + A+ +++R +P Sbjct: 855 -----------------VTGVRDPHAVNDKRQRTLP------------------------ 873 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625 R +NT ++Q + DI+ M+ K ++ Sbjct: 874 ----ERIAINT------------------VIQGSAADIIKRAMITVHRRLKEEKLQARML 911 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 L +HDE++ E P ++ ++ M++ +PLK + Sbjct: 912 LQIHDELLFEFPPEEQGQLRDLVVESMSTAEK--ISVPLKID 951 >gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC BAA-286] Length = 931 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 85/582 (14%), Positives = 173/582 (29%), Gaps = 82/582 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70 D G+ ++ +F F + D + + + EN + + Sbjct: 364 DTETTGLDPNVS--ELVGMSFAFREGEAYYVPVPADFEKAKAIVEQFRPFFENGETEKIG 421 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VLK I + + ++A P A K EL Sbjct: 422 QNIKYDIIVLKKY---GIHVRGRLFDTMIAHYLINPELRHNMDYMAETYLKYKTIHIDEL 478 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181 I L R+ +Y D +T ++ LE K Sbjct: 479 IG----SRGKNQLNMRSLRP-----DQIKDYACEDADITLKLKAILEKAIEKQDLGKLLY 529 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L Y+ + G +D ++ + +E ++ E+ + +++ Sbjct: 530 DIELPLIYVLADMEYTGVRLDKTALAEYSKTLTLELQGIESEIYK-AAEQEFNINSAKQV 588 Query: 240 KTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + + T+T T + L S K ++ Sbjct: 589 GEVLFDKLKIVEKPKKTKTGQYVTSEETLESMKDAHSIVGKILE---------------- 632 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + G + P P + H +Q +T +S+P Sbjct: 633 ---------------YRGLKKLLSTYIDALPLLVSPLDDKLHTSYNQTVTATGRLSSSNP 677 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R IA E AD + IE R++A ++ + + AF +GED++ Sbjct: 678 NLQNIPIRDAQGKEIRKAFIADEACIFFSADYSQIELRIMAHLSQDPTMIDAFNSGEDIH 737 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A+ + + ++VT D R K + Y +A + L+ Sbjct: 738 AATAAKIYKIPISEVTGDMRRKAKTANFGIIYGISVF---GLAERLSIPRGEAKELID-- 792 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + + + G K+ +SR + + + Sbjct: 793 GYFATYPKVKEYMDKSISVARTNNYVETVFGR-----KRYLPDINSRNTTVRGYAERNAI 847 Query: 530 QT-IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 I+ A I + + +++ ++L L + Sbjct: 848 NAPIQGSAADIIKVAMNRIFDRFERENIKSKMILQVHDELNF 889 >gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] Length = 984 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 113/648 (17%), Positives = 213/648 (32%), Gaps = 139/648 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + L+ LE V N F+R VL+ I + + +LA P L + Sbjct: 445 EALRPILERDRYPKVLQNVKFDRLVLRTQ---GIKLAGVVMDTMLASYVLNPDNSHNLNS 501 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E +++ K+L + KG+T L + N YC V T ++ Sbjct: 502 LTERY-FPQIQLKSYKDL--KIPKGKTIAELSSKTVAN----------YCGMQVYATFKL 548 Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +L L EQ L + + +G +D A L++ ++ + ++Q Sbjct: 549 VPKLREKLEAIPAIEKLLLEVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQ 608 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 G + ++L LF + L + Sbjct: 609 NAYKQA-GEEFNLGSPKQLSELLFEKLNLDRRKSRK------------------------ 643 Query: 281 MRASRSAVLKLNTLVEAMNSDGR-LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 ++ + +E + D + L+ S+ P R H + Sbjct: 644 ---MKTGYSTDHATLEKLQGDHPVIDTILEHRTLSKLKSTYVDALPKLVHKDTQRIHTDF 700 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q IT +S+P+ I S +R + G LV AD + IE R+LA ++ Sbjct: 701 NQTITSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLLVSADYSQIELRILAHLSQ 760 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E ++ + +D++ T F VT ++R +GK + + Y G Q+ A Sbjct: 761 EPVLVETYRNNQDIHAVTAKLLF--EKETVTPEERRLGKTINFGVIYGMGP---QRFARE 815 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + +R+K+ + + Sbjct: 816 AGVSAAEGKEFI-------------------------------------DRLKQRYPK-- 836 Query: 515 SRVSELWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ L Q I G + I+ R+R Y + + N L + ++ Sbjct: 837 -----VFGYLEQMKGDAIAKGYVETILGRRR------YFEFNSN----RLRDAKGKNPQE 881 Query: 573 VGNNRS-YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLT 627 + + + L R +Q S DI+ M+ + ++L Sbjct: 882 IDLDEFKGIGQYDSGLLRAAANAP------IQGSSADIIKIAMVKMHEVLQDYQARLLLQ 935 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 VHDE+V E P + E + M S +PL + E + + Sbjct: 936 VHDELVFEVPPDEWEELQPKIRETMESAVE--LTVPLVVDVSEGENWM 981 >gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 942 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 111/637 (17%), Positives = 210/637 (32%), Gaps = 103/637 (16%) Query: 2 ATLFIDFETRSPIDL----------TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP 51 + ID ET S + + G+ Y AF + Sbjct: 365 KPISIDTETTSQDPMMAELLGISFSEEPGVAYY--------IAFSH-SESIYSHLLPSAE 415 Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--AL 109 ++LK LE+++ + N ++ VLK N I + +LA P Sbjct: 416 ESLKILKPMLEDSNWKKIGQNIKYDLLVLK---NYGIELKGIYFDTMLASYLLNPGERRH 472 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A+ + K +EL+ G+ + LYD + EY D +T Sbjct: 473 NMDDMAVDYLNYKTITYEELVG---TGKKKQNLYD----IDPDK---VSEYACEDADITL 522 Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ L P E + + G VD + +L+ D + + + Sbjct: 523 QLHNVLSPKMDENIHKKLFYEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIKEHE 582 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQV 276 + + G + ++L+T LF + L E T+T VL S + P + Sbjct: 583 KNIHFYA-GRQFNVNSTKELQTVLFEDLRLPAEKKTQTGYSTDHSVLESLQGTHPIIDDL 641 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R S+ P P+ R H Sbjct: 642 LSIR-------------------------------KFSKLKSTYTDTLPLLVNPKTKRIH 670 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 +Q I +++P+ I +R IA +G +++ D + IE R++A Sbjct: 671 TSYNQTIAATGRLSSTNPNLQNIPIKDEEGRLLRKGFIAKKGYEILSLDYSQIELRIMAH 730 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 + + + A+ +G D++ T A F V QVT D R KV+ ++ Y + + Sbjct: 731 FSNDPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIYGVTSF---GL 787 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 ++ ++ + E++ A E E ++ ++ T R ++ Sbjct: 788 SNNLRISRKEAKEFI------EKYFAAYKGVATYMEEIVEFCKQNGYVETLLGR-RRYLP 840 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 HS + + + G + K + + K ++ L+L LV+ Sbjct: 841 DIHSSHKMVSEGAKRVAINSPIQGTSADMIKIAMIQIHEKIKKESFRSKLLLQVHDELVF 900 Query: 571 -RDVGNNRSYLNTTTRQLTREYTYGG-KL-TENIVQA 604 D + + Q+ +E KL +VQ Sbjct: 901 EVDPKEKKEFF-----QMAKEEMESAMKLKVPIVVQG 932 >gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] Length = 976 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 110/642 (17%), Positives = 194/642 (30%), Gaps = 156/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ V +A N ++ V++ I + T++++ P + Sbjct: 450 LKIVLEDASVLKIAQNMKYDWLVMRRH---GINTVSFDDTMLISYVLDAGTGSHGMDPLS 506 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + +G GK ++ Y D VT Sbjct: 507 ERWLGHTPIPYKDVAGSGKSAVS-----------------FDMVDLDRATAYAAEDADVT 549 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +++ L+P + E + L + + +RG VD + L+ + Sbjct: 550 LRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSGDLAQAAAAY 609 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ L G + ++L LF + L T+T T +VL P Sbjct: 610 EDEIYELA-GERFNIGSPKQLGDILFGKMSLSGASKTKTGQWSTSAQVLEDLAAEGHPLP 668 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P Sbjct: 669 RKIVDWRQL-------------------------------TKLKSTYTDALPGFINPETK 697 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +SDP+ I +R+ IA G KLV AD + IE RV Sbjct: 698 RVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRV 757 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 758 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF-- 815 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + ++T + + + E A Sbjct: 816 -GLANQLSIPREEAGQYIRT------YFERFPGIKDYMEATKAFAR-------------- 854 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +TI +A R P R+ Sbjct: 855 ----------------ENGYVETIFGRRAHYPDIRASN----------------PQVRAF 882 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628 N R+ +N + G + I +A+ R E + ++L V Sbjct: 883 ------NERAAINAPIQ---------GSAADIIRRAMIR---MEDALAEQNLAARMLLQV 924 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 HDE++ E PD + E ++ H+M + A L PL + Sbjct: 925 HDELIFEVPDNEVEKTIPVVRHIMENAAMPAVSLAVPLHVDA 966 >gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040] gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040] Length = 935 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 95/643 (14%), Positives = 180/643 (27%), Gaps = 156/643 (24%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D MP ++LK LE+ + + N ++ + I + T++L+ Sbjct: 398 DLAEG-QMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFAR---NGIDVTPIDDTMLLS 453 Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 +G + + + K L+ +DR + Sbjct: 454 YALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSG----KSAITFDR------VSIEDATP 503 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++++ +P + E+ L + + G VD ++ Sbjct: 504 YAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQHGIKVDRDTLSRMSN 563 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L G + ++L LF + L +T T +L Sbjct: 564 AFSQKMAALEAEIHELA-GETFNVGSPKQLGEILFDKMSLPGGKKGKTGAYATGADILED 622 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ Sbjct: 623 LATEHTLPARVLDWRQL-------------------------------SKLKSTYTDALQ 651 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 P R H Q + +SDP+ I +R +A EG L+ D Sbjct: 652 EHIHPETGRVHTSYLQTGANTGRLASSDPNLQNIPVRSEEGRRIREAFVADEGNVLLSLD 711 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +AG +AF G D++ T + F+V ++T D R K + + Sbjct: 712 YSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAINFGVI 771 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +A + + Sbjct: 772 YGISGF---GLARNLRIPRGEAQGFID--------------------------------- 795 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + R + + E+G R+ + Sbjct: 796 -----------RYFERFPGIRQYMDDTVNFAKEHGYVQTLFGRK---------------I 829 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616 P + R R+ +N +Q + D++ M+ Sbjct: 830 HTPEIAAKGPRASFAKRAAINAP------------------IQGTAADVIRRAMVRMPEA 871 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658 ++L VHDE++ E P+ E S+ +M A Sbjct: 872 IAHLPARMLLQVHDELLFEVPEDHVEETISVAREIMEGAADPA 914 >gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024] gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024] Length = 923 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 116/683 (16%), Positives = 212/683 (31%), Gaps = 165/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQ 399 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 ILVQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+P E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T ++++N+ + + +P + Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT-DEFNASMLYHLMT 652 E+V E E + + +M Sbjct: 878 ELVFEADQNIAEELSKQIATVME 900 >gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] Length = 881 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 108/624 (17%), Positives = 192/624 (30%), Gaps = 126/624 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE + + ++R + I + +L + + Sbjct: 333 LKPLLEASAPPKSGQHHKYDRHIFARA---GIELRGIKDDTMLMSY-----TIDSTATRH 384 Query: 117 KLSS-------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 L + +++ + K T + + Y D +T Sbjct: 385 NLDDLADYYLNHQTTTFEDIAGKGAKQLTFDQI----------PLETATAYACEDADITL 434 Query: 170 EIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + L P + E L L I G +D A + + + L Sbjct: 435 RLKNHLAPKLAAVPQLDALYRELEMPLAELLYKIEATGVRIDPAALAAQSAEISGQLAAL 494 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAI 274 + +L G + ++L+ L+ + GL + +T + VL+ + + Sbjct: 495 EHAAHTLA-GSPFNLGSPKQLQEILYDQLGLPVLRKTPKGQPSTNEEVLAELAESHGAEL 553 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 R L+ G ++ P P R Sbjct: 554 P-----------------------------RLILEHRGLAKLKTTYTDRLPELINPHTGR 584 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q +T +SDP+ I +R IA +G +++ AD + IE R++ Sbjct: 585 IHTSYHQAVTSTGRLSSSDPNLQNIPVRSEAGRRIRRAFIAEDGWQILAADYSQIELRIM 644 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ + L AF G+D++ T A F VAP V+++QR K + L Y A Sbjct: 645 AHLSADPGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGMSAF--- 701 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A + A + T A R + E A + ++ T R + Sbjct: 702 GLARQLNIPRGQAADYIDTYFARYPK------VRDYMDATREAAHKQGYVETLLGR-RLY 754 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +S+ + + G A KR + + D+ + LP Sbjct: 755 LPDINSKNPQRRQASERLAINAPMQGSAADIIKRAMLAI-----DRELELSPLPG----- 804 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 + T L RE T A +RD L +++ VH Sbjct: 805 --------AGGTHNTNPLPREATA----------AKNRDDL------------RLIMQVH 834 Query: 630 DEIVCET-PDTDEFNASMLYHLMT 652 DE+V E P + LM Sbjct: 835 DELVFEIRPQAAAELTPRIVALME 858 >gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] Length = 936 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 102/658 (15%), Positives = 178/658 (27%), Gaps = 160/658 (24%) Query: 46 DCVHDP-----VMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D MP LK+ LE+ V + N ++ +L PI + Sbjct: 393 DLFGGEGLSEGQMPLEEAVAMLKDVLEDPAVLKIGQNMKYDAKILHRYGVDVAPIDDTML 452 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GL + + K L+ T R Sbjct: 453 -MSYALHAGL-HGHGMDTLSERYLDHTPIPIKPLLGSGKSAVT----------FDRVPIE 500 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205 Y D +T +++ +P +E+ L + + G VD Sbjct: 501 DAVPYAAEDADITLRLWQTFKPQLHQERVTTVYETLERPLVPVLAEMERNGIKVDRDTLS 560 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQR 261 ++ + L+ E+ L G + +L LF + GL + +T Sbjct: 561 RMSNAFAQKMAGLEAEIHELA-GETFNVGSPAQLGEILFDKMGLEGGKRGKNGKYSTGAD 619 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 +L +V + R S+ Sbjct: 620 ILEDLATEHDLPRRVLDWRQL-------------------------------SKLKSTYT 648 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 R H Q ++DP+ I +R +A EG L Sbjct: 649 DALQDHINKDTGRVHTSYAQTGASTGRMASTDPNLQNIPVRSEEGRRIREAFVAEEGNVL 708 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE R+LA MAG + +AF G+D++ T + F V ++T + R K + Sbjct: 709 LSLDYSQIELRILAHMAGIETLQQAFAEGQDIHALTASEMFGVPLEEMTPEIRRQAKAIN 768 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + +DA+ F E P Sbjct: 769 FGVIYGISGFGLARNLRI-------------------PRKDAQGFIDRYFERFP------ 803 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 R+ E + QT+ K A P K Sbjct: 804 ------------GIRKYMDSTVEF--AKEHGYVQTLFGRKIHTAEINAKGPKAGFAK--- 846 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R+ +N +Q + D++ M+ Sbjct: 847 --------------------RAAINAP------------------IQGTAADVIRRAMIR 868 Query: 617 ----ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E P+ E + +M + A + L + Sbjct: 869 MPEAIAHLPARMLLQVHDELLFEVPEAAVEDTIAAAREVMENAADPAVHLDVKLVVDA 926 >gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J] gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J] gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] Length = 937 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 111/634 (17%), Positives = 191/634 (30%), Gaps = 154/634 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ V + ++ V N DI + T++ + A ++ Sbjct: 419 LEDESRKKVGQHLKYDAHV---FANHDIALRGIEHDTMLESYVLESHRNHGMDALAERVL 475 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K + + C + +D EY D VT + + L P Sbjct: 476 HLKTITYEAV----CGKGASQIGFD------EVPLDRATEYAAEDADVTLRLHRTLFPKV 525 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + Q + G +D + + + L+ E L G Sbjct: 526 AEDDKLRYVYEQIEMPASIVLQKMERNGVLIDADRLAKQSNELGLRLIDLEAEAHKLA-G 584 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + L + T +T + VL + P + Sbjct: 585 QPFNLSSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 637 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + G ++ P PR R H Q Sbjct: 638 ------------------------DYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATA 673 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R IA EG +V AD + IE R++A ++ ++ + Sbjct: 674 VTGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLM 733 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A FNV P +VT DQR + KV+ L Y A +AS G+ Sbjct: 734 RAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAF---GLASNLGIGR 790 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + +R Sbjct: 791 DAA--------------------------------------------KLYIDRYFARYPG 806 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + ++ E G RR L LP + + Sbjct: 807 AASYMDETRQRAREQGYVETVFGRR---------------LWLP------------DING 839 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIV 633 N RQ +Q + D++ M+ +A +V+ VHDE+V Sbjct: 840 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQGWLDAEAMRSRLVMQVHDELV 894 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + L LM S + +PL AE Sbjct: 895 LEVPQDELAVVRERLPELMCSVAT--LRVPLVAE 926 >gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 485 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 180/551 (32%), Gaps = 119/551 (21%) Query: 136 GETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------E 184 RNK R A Y D VT +++ ++P E+ Sbjct: 25 PCGDVAGTGRNKVTFERVAIDKATAYAAEDADVTLRLWRMMKPRLVAERRVTVYETLERP 84 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G +D + L+ +L++E++ G +++ LF Sbjct: 85 LVPVLARMERAGIRIDRNMLSRLSGDFSQILARLEEEIQEDA-GEKFQVSSPKQIGDVLF 143 Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 + GL T + ++ + QA + Sbjct: 144 GKLGLPGAKKTPSGQWATPATLLEELAQAGHELPKK------------------------ 179 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 L + ++ +R H T +S+P+ I Sbjct: 180 --ILNWRQLAKLKSTYTDSLQEHADRETNRVHTSFSLAATTTGRLSSSEPNLQNIPIRTE 237 Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +A EGKKL+ AD + IE R+LA +A +AFE G D++ T + F V Sbjct: 238 EGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGV 297 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 Q+T D R K + + Y A +A G+ + +K E + Sbjct: 298 PLDQMTGDLRRRAKTINFGIIYGISAF---GLADRLGIGREEASAFIK--QYFERFPGIR 352 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 ++ + KK+ R+K V+ L+ + Sbjct: 353 DYI---------------------DTTKKSCREK-GYVTTLFGRVCH------------- 377 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 Y + NN PS R+ V R +N + G + Sbjct: 378 ----------YPQIRSNN-----PSERASV------ERQAINAPIQ---------GTAAD 407 Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658 I +A++R E + A + ++L VHDE+V E PD + E ++ +M P+ A Sbjct: 408 IIRRAMTR---MEAALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAEVMEQAPAPA 464 Query: 659 KGL--PLKAEG 667 L PL E Sbjct: 465 LTLSVPLVVEA 475 >gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076] gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 921 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 101/579 (17%), Positives = 181/579 (31%), Gaps = 81/579 (13%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 E+ + K T + + A G+Y + +T + + E Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T R + +++ L + Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 G A K+ V + ++ + ++L LV Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878 >gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 921 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 100/570 (17%), Positives = 176/570 (30%), Gaps = 81/570 (14%) Query: 34 AFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 +F H H + + LK LE+ D T V ++ F +L C Sbjct: 356 SFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC 415 Query: 84 F-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 I + +L + + K + +E+ + K Sbjct: 416 ALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAKQ 475 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQEL 185 T + + A G Y + +T + + E L+ E L Sbjct: 476 LTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPL 525 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + I +G VD L + + + T L++E ++ G + ++L L+ Sbjct: 526 VPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSPKQLGVILYE 584 Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + G+ + T T + + + Sbjct: 585 KLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL------------------------ 620 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 +Q+ S+ P Q PR R H Q + +SDP+ I Sbjct: 621 --MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAE 678 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ T A F V Sbjct: 679 GRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVE 738 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 VT D R K + L Y A +A G++ V A Sbjct: 739 LENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFARYP------ 789 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 E A E F+ T R + +++ L + G A Sbjct: 790 GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINAPMQGTAADI 848 Query: 541 RKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 K+ V + ++ + ++L LV Sbjct: 849 IKKAMVAVNGWLEESGLDARVILQVHDELV 878 >gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB] gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB] Length = 906 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 114/690 (16%), Positives = 202/690 (29%), Gaps = 166/690 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV-----LKEALENT 64 D + +A ++ + H +P+ LK LE+ Sbjct: 334 DTETTSLDSFA--ARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVLARLKSWLESA 391 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKM 123 V N+ +++ V N I + T++ + + Sbjct: 392 AHKKVLQNAKYDQHV---FANHGIALSGIAHDTMLQSYVIESDKGHDLGQLCTRHLGLAT 448 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 ++L + K T + + Y D VT + L P + E Sbjct: 449 IAYEDLCGKGAKQITFDQV----------DIERAATYAAEDSDVTLRVHNVLHPQFASEP 498 Query: 184 ELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L + I G +D + + + + L+ + L G + Sbjct: 499 GLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQKIMALEAQAYELA-GQPFN 557 Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L LF + GL ++ T + T + VLS P + +R Sbjct: 558 LASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYPLPKLLLEHRSL------ 611 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 S+ P P+ R H Q Sbjct: 612 -------------------------SKLKGTYTDKLPRMVNPQTGRVHTHFSQAAVVTGR 646 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +SDP+ I +R+ IA G +V AD + IE R++A ++G++ L AF Sbjct: 647 LASSDPNLQNIPVRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFA 706 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ T F V P +V DQR + K + L Y A +A GL + Sbjct: 707 HGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINFGLIYGMSAF---GLARQLGLERSAAQ 763 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + +R + Sbjct: 764 --------------------------------------------TYIDRYFARYPGVARY 779 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + +A E ++G + GR L + D+ ++ N Sbjct: 780 MEEARESARQHG-----------------------YVETAFGRRLWFPDIRSS----NGN 812 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP 637 RQ +Q + D++ M+ ++L VHDE++ E P Sbjct: 813 RRQGAERAA-----INAPMQGTAADLIKLAMIAVQNWLEKSALKSRLILQVHDELLLEVP 867 Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 D + + + L LM +PL E Sbjct: 868 DGELMDVRTHLPRLMGQVAE--LKVPLVVE 895 >gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54] Length = 948 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 120/638 (18%), Positives = 194/638 (30%), Gaps = 156/638 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEA 115 L+ LE+ + H++ ++ V N I + T++ A + A Sbjct: 428 LRPWLEDASRAKLLHHAKYDTHV---FANEGIRLAGIAEDTMLQAYVLESHRGVGLNDLA 484 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + ++L + K A G Y D T ++ + L Sbjct: 485 QRYLGRSGVSYEDLCGKGAKQ----------IGFDEVAVDKAGHYAAEDADFTLQLHQVL 534 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P + E ++ + TI G VD A + + E +L+Q+ L Sbjct: 535 RPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHKLGQEMLQLEQKAYEL 594 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF L + T +T + VLS + P + Sbjct: 595 A-GQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLLE--- 650 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + G S+ P P R H Q Sbjct: 651 ----------------------------YRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQ 682 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +SDP+ I VR IA +G L+ AD + IE R++A ++ + Sbjct: 683 AAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-LLLSADYSQIELRIMAHVSDDA 741 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF GED++ T + F VA A V+ +QR K + L Y G +AS G Sbjct: 742 NLQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAINFGLIYGMGVF---GLASNLG 798 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + A EN A E ++ T R Sbjct: 799 ITRDAAQAYIDRYFARYP------GVAMYMENTRRVAREQGYVETVFGR----------- 841 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGN 575 L LP R R G Sbjct: 842 ------------------------------------------RLQLPEIRGASGPRRQGA 859 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVH 629 R+ +N Q + D++ M + A K +++ VH Sbjct: 860 ERAAINAPM------------------QGTAADLIKMAMVAVQDWLEAEKLQTRMIMQVH 901 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+V E PD + E L LM + +PL AE Sbjct: 902 DELVLEAPDAELELVKQTLPRLMCNVAE--LRVPLVAE 937 >gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] Length = 1016 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 110/650 (16%), Positives = 198/650 (30%), Gaps = 170/650 (26%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSA 108 LK LE+ + VA N ++ ++K I + T++++ P + Sbjct: 488 LKALLEDESILKVAQNLKYDYLLMKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 544 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 K +G GK N Y D VT Sbjct: 545 EKFLGHTPIPYKDVAGSGKA-----------------NVTFDLVDIDRATHYAAEDADVT 587 Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ L+P + E+ L + + RG VD + L+ + +L Sbjct: 588 LRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARL 647 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ L G + ++L LF + GL T+T T +VL Sbjct: 648 EDEIYVLA-GERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTSAQVLEDLAAAGFELP 706 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P Sbjct: 707 RKIVDWRQ-------------------------------VTKLKSTYTDALPGYVHPETK 735 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +S+P+ I +R+ I++ G KL+ AD + IE RV Sbjct: 736 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A KAFE G D++ T + F V + + R K + + Y A Sbjct: 796 LAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF-- 853 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + + +K ++ + R E+ A + ++ T Sbjct: 854 -GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG---- 902 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 +R + P + PS R+ Sbjct: 903 ---------------------------------RRINYPEIRSSN---------PSVRAF 920 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------ 622 N R+ +N +Q + D++ M+ A Sbjct: 921 ------NERAAINAP------------------IQGSAADVIRRAMIKIEPALVEVGLAD 956 Query: 623 --DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++L VHDE++ E D D E ++ +M + A + PL+ + Sbjct: 957 RVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVDA 1006 >gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14] gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14] Length = 949 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 92/605 (15%), Positives = 184/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ + + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLE---NYGVQVKGALFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D VT ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----IYRYACEDADVTLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + +++QE+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + E + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPSVKAYMEKSIQIAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3] Length = 732 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 111/649 (17%), Positives = 200/649 (30%), Gaps = 157/649 (24%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL 109 +P+ LK LE+ V VA N ++ +LK I + T++++ A Sbjct: 199 DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAH 254 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + K K++ N Y D VT Sbjct: 255 GMDPLSEKFLGHTPIPYKDVA----------GSGRANVTFDLVDIDRATHYAAEDADVTL 304 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ L+P + E+ L + + RG VD + L+ + +L+ Sbjct: 305 RLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLE 364 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274 E+ +L G + ++L LF + GL T+T T VL Sbjct: 365 DEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 423 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ + R ++ P P R Sbjct: 424 KIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETKR 452 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H T +S+P+ I +R+ I++ G KL+ AD + IE RVL Sbjct: 453 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 512 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A KAFE G D++ T + F V + + R K + + Y A Sbjct: 513 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF--- 569 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A+ + + +K ++ + R E+ A + ++ T Sbjct: 570 GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG----- 618 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +R + P + PS R+ Sbjct: 619 --------------------------------RRINYPEIRSSN---------PSVRAF- 636 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------- 622 N R+ +N +Q + D++ M+ A Sbjct: 637 -----NERAAINAP------------------IQGSAADVIRRAMIKIEPALAEAGLAER 673 Query: 623 -DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++L VHDE++ E D D + ++ +M + A + PLK + Sbjct: 674 VRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDA 722 >gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601] gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601] Length = 921 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 119/699 (17%), Positives = 216/699 (30%), Gaps = 175/699 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---- 60 ID ET S +L ++ +F + H P P L A Sbjct: 349 IDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVLA 398 Query: 61 -----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 LE+ + + ++R V N I + + T++ + + Sbjct: 399 RLKPWLEDPKHPKLGQHVKYDRHV---FANHGIEVRGYVHDTMLQSYVLEVHKPHGLASL 455 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + + ++L + K P + Y D T ++ + Sbjct: 456 AERHTGRTGISYEDLCGKGAKQ----------IPFSQVPVDKAAAYSCEDSDQTLDVHRV 505 Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L P +++L + L+ I G +D + + +L+QE Sbjct: 506 LWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQEAYD 565 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + G + ++L F + G+ + T T T + VL + P ++ +R Sbjct: 566 IA-GQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 624 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 +L L + T + + PR R H Sbjct: 625 --------------------------SLSKLKGTYTDKLAQLA-----DPRTGRVHTHYA 653 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + ++DP+ I VR +A G+ + D + IE R++A ++G+ Sbjct: 654 QAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF G D++ T A F VA QVT +QR KV+ L Y + +A Sbjct: 714 EALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSY---GLAKNL 770 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + + Sbjct: 771 GIDNTAAKNYID--------------------------------------------RYFQ 786 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVG 574 R +W + Q G RR L LP S R Sbjct: 787 RYPGVWQYMQDTKAQAKARGYVETVFGRR---------------LYLPEINSPNGPRRSA 831 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628 R+ +N Q + D++ + M+ A +++ V Sbjct: 832 AERAAINAPM------------------QGTAADLIKKAMVQVQDALDAAKPEVLMIMQV 873 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P+ D + + + +M +PL AE Sbjct: 874 HDELVFELPEGDVNWLRAEVPRIMAGVAE--LKVPLLAE 910 >gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701] gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701] Length = 997 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 104/624 (16%), Positives = 191/624 (30%), Gaps = 145/624 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 LE+ N+ ++R +L + + + +LA +A Sbjct: 464 LESARHPKTLQNAKYDRLIL---LRHGLSLEGVVMDTLLADYLRDANA-----------K 509 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT-----------R 169 +E E F + L + + YC DV VT + Sbjct: 510 HGLEVLAERNFGF-TPTSFSELVAKGETFAAVPIAAAARYCAMDVHVTWRLTPLLRGQLQ 568 Query: 170 EIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++ + L L + E L + + G +D TL++ + L+ G Sbjct: 569 QLGEALPKLLDQVELPLEPVLARMEATGIRIDKPYLATLSEELAGTLASLEAGARE-AAG 627 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + + ++L LF GL + +T T VL P V +R Sbjct: 628 VEFNLASPKQLGELLFETLGLERKKSRKTKTGWSTDAAVLEKLAGDHPVVPLVLEHR--- 684 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S+ P P R H + +Q + Sbjct: 685 ----------------------------TLSKLKSTYVDALPALVEPETGRVHTDFNQAV 716 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +S+P+ I S +R + EG +L+ AD + IE R+L ++GE+ Sbjct: 717 TATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWQLISADYSQIELRILTHLSGEEVL 776 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++A+ G+D++ T + +VT D+R +GK + + Y GA Q+ A TG++ Sbjct: 777 VEAYANGDDVHALTARLL--LDKDEVTADERRLGKTINFGVIYGMGA---QRFARETGVS 831 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + + + F E A+ ++ T R + Sbjct: 832 QSQAKEFL--SKYKQRYPKVFAFL----ELQERLALSRGYVETILGRRRP---------- 875 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 D L + + Sbjct: 876 --------------------------------FAFDPGGLGRLR-------------GKP 890 Query: 579 YLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629 R +L +Q S DI+ M+ + ++L VH Sbjct: 891 PEEIELEVARRAGMEAQQLRAAANAPIQGSSADIIKLAMVQLDQQLRASGLPARLLLQVH 950 Query: 630 DEIVCE-TPDTDEFNASMLYHLMT 652 DE+V E P+ E + + +M Sbjct: 951 DELVLEAAPEALEPVLAAVKQVME 974 >gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum] Length = 1016 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 113/656 (17%), Positives = 201/656 (30%), Gaps = 171/656 (26%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------ 104 +P+ LK LE+ V VA N ++ +LK I + T++++ Sbjct: 483 DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAH 538 Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 P + K +G GK N Y Sbjct: 539 GMDPLSEKFLGHTPIPYKDVAGSGKA-----------------NVTFDLVDIDRATHYAA 581 Query: 163 GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT ++ L+P + E+ L + + RG VD + L+ + Sbjct: 582 EDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 641 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 +L+ E+ L G + ++L LF + GL T+T T +VL Sbjct: 642 QGAARLEDEIYVLA-GERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTSAQVLEDLAA 700 Query: 269 L-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + R ++ P Sbjct: 701 AGFELPRKIVDWRQ-------------------------------VTKLKSTYTDALPGY 729 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 P R H T +S+P+ I +R+ I++ G KL+ AD + Sbjct: 730 VHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 789 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA +A KAFE G D++ T + F V + + R K + + Y Sbjct: 790 QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG 849 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A +A+ + + +K ++ + R E+ A + ++ T Sbjct: 850 ISAF---GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETI 900 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 +R + P + Sbjct: 901 FG-------------------------------------RRINYPEIRSSN--------- 914 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 PS R+ N R+ +N +Q + D++ M+ A Sbjct: 915 PSVRAF------NERAAINAP------------------IQGSAADVIRRAMIKIEPALV 950 Query: 623 --------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++L VHDE++ E D D E ++ +M + A + PL+ + Sbjct: 951 EVGLADRVRMLLQVHDELIFEVEDQDVEKAMPVIVSVMENATMPALEMRVPLRVDA 1006 >gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6] gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6] Length = 949 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 92/605 (15%), Positives = 184/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ + + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLE---NYGVQVKGALFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D VT ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----IYRYACEDADVTLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + +++QE+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + E + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPSVKAYMEKSIQIAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601] gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601] Length = 935 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 106/653 (16%), Positives = 189/653 (28%), Gaps = 156/653 (23%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D MP +LK LE+ V + N ++ + PI + + A Sbjct: 398 DLAEG-QMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARYGVRIAPIDDTML-MSYA 455 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + GL + + S KEL+ K +T + + +Y Sbjct: 456 MNAGL-HGHGMDALSERYLSHTPIPIKELLGSGKKMKTFDQV----------PIEDAVKY 504 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++ L+P + E+ L + + G VD ++ Sbjct: 505 AAEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAGVQVDRDTLSRMSNA 564 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ L G + ++L LF + GL +T T VL Sbjct: 565 FSQKMAALEAEIHELA-GESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLEDL 623 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +V + R S+ Sbjct: 624 ATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQE 652 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 R H + ++DP+ I +R +A EGK +V D Sbjct: 653 HINKDTGRVHTSYVISGANTGRLSSTDPNLQNIPVRSEEGRRIREAFVAPEGKTIVALDY 712 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA MA +AF G+D++ T + FNV ++T + R K + + Y Sbjct: 713 SQIELRILAHMAEIDALKQAFRDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAINFGVIY 772 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 +A + + + + + R ++ A E Sbjct: 773 GISGF---GLARNLRIPRSEAQGFID------RYFERFPGIRTYMDDTVAFAKE------ 817 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 H RV L+ + E + +A A+ Sbjct: 818 ------------HKRVETLFGRVIHTPEIAAKGPRAGFAK-------------------- 845 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617 R+ +N +Q + DI+ M+ Sbjct: 846 ---------------RAAINAP------------------IQGTAADIIRRAMIRMPDAI 872 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM--TSNPSWAKGLPLKAEG 667 K ++L VHDE++ E E +M + P +PL + Sbjct: 873 EKLPATMLLQVHDELIFEVEQGAEEALISAARTVMEGAAEPVVKLDVPLVVDA 925 >gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36] gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36] Length = 931 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 109/647 (16%), Positives = 201/647 (31%), Gaps = 122/647 (18%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV----- 56 D ET S + ++ +F + HD + + Sbjct: 357 DTETTSLNYIQ----------AELVGLSFAVAEGEAAYLPVAHDYIDAPEQLDRDHVLAS 406 Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALK 110 LK LE+++ V N ++++VL D I ++ + R + A K Sbjct: 407 LKTLLEDSNAKKVGQNLKYDKSVLANYGINLAGIAYDTMIESYVYNSIATRHDMDSLADK 466 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +G K +E+ + K T + Y D VT Sbjct: 467 YLG-------HKTISFEEIAGKGKKQLTFNQI----------ELEQASAYAAEDADVTLR 509 Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L P + E L + ++ +G +D + + + +L+ Sbjct: 510 LHNVLWPKIEAEPSLVALFNEVELPLVSILSSVERQGVLIDKSKLDAQSVELGARMLELE 569 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275 + + + ++L+ LF++ L + T T + VL P Sbjct: 570 AKAHEIA-EQPFNLSSPKQLQEILFVKMELPVIKKTPKGAASTAEDVLQELALNYPLPKI 628 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R S+ P + R Sbjct: 629 ILEYRSL-------------------------------SKLKSTYTDKLPTLIEEKTGRV 657 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H Q +T +SDP+ I +R I G K V D + IE R++A Sbjct: 658 HTSYHQAVTATGRLSSSDPNLQNIPVRAGEGRRIRQAFIPETGYKYVAVDYSQIELRIMA 717 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ ++ L AF G+D++ T A F+V VT DQR K + L Y A Sbjct: 718 HLSQDKGLLTAFSEGKDIHRATAAEVFSVELDDVTSDQRRSAKAINFGLIYGMSAF---G 774 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + + + +E +M E + A + ++ T R + Sbjct: 775 LGRQLNIPQKEAKKYMT-----RYFERYPGVLTYMDET-RKVAKDKGYVETLSGR-RLYL 827 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + ++R +A G A II + +V + N++ +++ L Sbjct: 828 PEINARNKMSQMAAERAAINAPMQGTASDIIKKAMINVAGWMETVETNSIRMLMQVHDEL 887 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI--LAEG 613 V+ + Y K+ E + A+S D+ LAE Sbjct: 888 VF-------------EIKEEHVEAYVVKIKELMAAAMSLDVPLLAEA 921 >gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91] gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91] Length = 906 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 122/695 (17%), Positives = 220/695 (31%), Gaps = 164/695 (23%) Query: 5 FIDFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 ID ET S + G+ E I A + P +L + + Q LK Sbjct: 332 SIDTETTSLNPMEAELVGLSLCTEPGHAAYIPLAHHYQGVPSQL----NREQVLQRLKPW 387 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LEN+D+ V N ++R V N + ++ TL+ + + A + Sbjct: 388 LENSDIPKVGQNLKYDRHV---FANHGVMLNGIAHDTLLQSYVLESHLSHDLDSLARRHL 444 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + ++ + K + + G Y D + + L P+ Sbjct: 445 DIQTISYDDVTGKGAK----------RIGFEQVEIQQAGIYAAEDADIPLRLHHFLYPII 494 Query: 180 SK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 SK E L + I G +D L + + + L+Q+ SL G Sbjct: 495 SKDAHLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLREQSGELARQLVILEQQAHSLA-G 553 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++++ LF + L + T T + VL P + + R A Sbjct: 554 RAFNLNSTKQIQEILFGQHKLPVIKKTPKGAPSTDEEVLQQLALDYPLPKILLDYRSLA- 612 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P + R H Q + Sbjct: 613 ------------------------------KLRSTYIDKLPQMVNRQTGRVHTNYAQAVA 642 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R IA G ++ AD + IE R++A ++ + + Sbjct: 643 VTGRLASNDPNLQNIPVRTPEGRRIREAFIAPSGWYIISADYSQIELRIMAHISQDAGLI 702 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A F ++ QV +QR KV+ L Y +A+ G++ Sbjct: 703 RAFLGGQDIHSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMSEF---GLATQLGIDR 759 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + +R Sbjct: 760 SAARAFID--------------------------------------------RYFARYPG 775 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRS 578 + + + + E +NG RR L LP RS + R +G R+ Sbjct: 776 VADYMQRTRELARQNGYVETVLGRR---------------LQLPDIRSSQHNRRMGAERA 820 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632 +N Q + DI+ M++ + +++ VHDE+ Sbjct: 821 AINAPM------------------QGTAADIIKLAMISVHQWLVKAPLQSKLIMQVHDEL 862 Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 V E + + F L LM + + +PLK E Sbjct: 863 VLEVIEDELFVVKENLIILMENT--FKLDVPLKVE 895 >gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806] Length = 956 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 113/645 (17%), Positives = 210/645 (32%), Gaps = 142/645 (22%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107 ++ + L+ L + + V N+ F+ V ++ I + + ++A P Sbjct: 414 EIVLEKLRPILASDNYPKVFQNAKFDIDV---FYHQGITVKGLVFDTMVASYVLHPELTH 470 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L+ + + L K L K YC D Sbjct: 471 NLEDLCDRY-LDGITSLSYKSL------------GIPGGKTIADLDITTTANYCGLDAYA 517 Query: 168 TREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERT 216 T + ++L+ +K L+ L + + G +++ L+Q ++ + Sbjct: 518 TYLLREKLQAELTKIPSLYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLERDLA 577 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 ++++ + G + ++L LF L+ + +T T Q VL + P Sbjct: 578 DIEKKAYE-SIGETFNLGSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHP 636 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + +R S+ P P+ Sbjct: 637 LIDYILEHR-------------------------------TLSKLKSTYVDALPKLAEPK 665 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 +R H + +Q IT +S+P+ I S +R I +G LV AD + IE Sbjct: 666 TARVHTDFNQTITSTGRLSSSNPNLQNIPVRSEFSRRIRQAFIPEDGYLLVSADYSQIEL 725 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA ++ E L+A+ + +D++ T F+ ++T ++R++GK + + Y GA Sbjct: 726 RILAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--GEITPEERSLGKTINFGVIYGMGA- 782 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 QK A + L + ++ EN + AI ++ T R Sbjct: 783 --QKFARESKLTVEQGRKFIEKYHQRYAQ------VFQYLENSKKQAIAQGYVETILGRR 834 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + Y D L + R Sbjct: 835 R------------------------------------------YFNFDNPLLKRL----R 848 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----Y 622 L D+ + LN QL R +Q S DI+ M+ + Sbjct: 849 GLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRA 902 Query: 623 DIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V E P + + + M S +PL E Sbjct: 903 RLLLQVHDELVLEVPREEWPSLESKIKTTMEEAVS--LTVPLLVE 945 >gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] Length = 997 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 111/649 (17%), Positives = 199/649 (30%), Gaps = 157/649 (24%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL 109 +P+ LK LE+ V VA N ++ +LK I + T++++ A Sbjct: 464 DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAH 519 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + K K++ N Y D VT Sbjct: 520 GMDPLSEKFLGHTPIPYKDVA----------GSGRANVTFDLVDIDRATHYAAEDADVTL 569 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ L+P E+ L + + RG VD + L+ + +L+ Sbjct: 570 RLWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLE 629 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274 E+ +L G + ++L LF + GL T+T T VL Sbjct: 630 DEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 688 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ + R ++ P P R Sbjct: 689 KIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETKR 717 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H T +S+P+ I +R+ I++ G KL+ AD + IE RVL Sbjct: 718 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 777 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A KAFE G D++ T + F V + + R K + + Y A Sbjct: 778 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF--- 834 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A+ + + +K ++ + R E+ A + ++ T Sbjct: 835 GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG----- 883 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +R + P + PS R+ Sbjct: 884 --------------------------------RRINYPEIRSSN---------PSVRAF- 901 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------- 622 N R+ +N +Q + D++ M+ A Sbjct: 902 -----NERAAINAP------------------IQGSAADVIRRAMIKIEPALAEAGLAER 938 Query: 623 -DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++L VHDE++ E D D + ++ +M + A + PLK + Sbjct: 939 VRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDA 987 >gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] Length = 949 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 92/605 (15%), Positives = 184/605 (30%), Gaps = 96/605 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 L +D ET G D ++ +F ++ + + Sbjct: 377 KILSLDTET--------TGTEP--MDAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 + EN + V N ++ VL+ N + + + ++A P + + E Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLE---NYGVQVKGALFDTMIAHYVLQPELRHGMDYLAE 483 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++E + R+ Y D VT ++ Sbjct: 484 IYLHYQTIHIDE-------LIGPKGKNQKNMRDLDPKD-----IYRYACEDADVTLKLKN 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE + E L + I G +D + + +++QE+ Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + + T+T T + VL S + P ++ Sbjct: 592 ELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P PR R H Sbjct: 651 HR-------------------------------GLKKLLGTYIDALPQLINPRTGRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE R++A ++ Sbjct: 680 FNQTVTSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLS 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF + D++ T A+ + + V D R K + Y +A Sbjct: 740 EDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAE 796 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + + E + A E ++ T R K+ Sbjct: 797 RMNVDRKEAKELIDG------YFETYPSVKAYMEKSIQIAQEKGYVETIFHR-KRFLPDI 849 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRD 572 +SR + + + G A K + + + ++L L + Sbjct: 850 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSV 909 Query: 573 VGNNR 577 N + Sbjct: 910 PVNEK 914 >gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311] gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311] Length = 994 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 109/674 (16%), Positives = 210/674 (31%), Gaps = 148/674 (21%) Query: 33 FAFGFDDHPVELWDCV-HDPVMPQVL-----KEALE----NTDVTIVAHNSYFERTVLKA 82 +G + +P L +AL + + N+ ++R +L Sbjct: 418 MCWGPGSDDLAYIPVSHQGDPIPDQLPLETVLQALAPWLASGEHPKALQNAKYDRLIL-- 475 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 +P+ + +LA +A A + +L+ + +G+ Sbjct: 476 -LRHGLPLAGVVMDTLLADYLRDAAAKHGLDAMAQRDYGISPTLFSDLVGKAKEGKASN- 533 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIF-------KRLEP-----LSSKEQELWYLD 189 +YC DV +TR++ + L P LS E L + Sbjct: 534 -------FSEVPLESAAQYCGMDVHLTRKLAIDLNQQLEALGPQLPNLLSKVELPLEPVL 586 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G +DV L+ + +L+ + + + ++L LF GL Sbjct: 587 AVMEATGIRIDVPYLEALSCEIGTNLERLEASAKE-AAEIDFNLASPKQLGDLLFNTLGL 645 Query: 250 HLED--LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 + T+T VL + P V +R+ Sbjct: 646 DRKKSRRTKTGYSTDATVLEKLEHDHPVVPLVLEHRVL---------------------- 683 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 S+ P R H + +Q +T +S+P+ I Sbjct: 684 ---------SKLKSTYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTE 734 Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 S +R + +G L+ AD + IE R+L ++GE+ +A+ G+D++ T + Sbjct: 735 YSRRIRKAFLPQDGWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--L 792 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +V+ D+R +GK + + Y GA Q+ A TG++ + + + + + Sbjct: 793 DKDEVSPDERRLGKTINFGVIYGMGA---QRFARETGVSQSEAKDFL--SKYKQRYPKVF 847 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 F E A+ ++ T R + Sbjct: 848 AFL----ELQERLALSQGYVETILGRRRP------------------------------- 872 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 D+N L + + ++ + Q R Sbjct: 873 -----------FHFDRNGLGRL----NGMDPLEINLEVARRGGMEAQQLRAAANAP---- 913 Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 +Q S DI+ M+ ++L VHDE+V ET P+ ++ M Sbjct: 914 --IQGSSADIIKLAMVQLQAKLESKNLPARLLLQVHDELVLETEPEALAVVEELVVQTMK 971 Query: 653 SNPSWAKGLPLKAE 666 + +PL+ E Sbjct: 972 NAID--LSVPLEVE 983 >gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1] gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1] Length = 916 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 103/667 (15%), Positives = 196/667 (29%), Gaps = 172/667 (25%) Query: 28 VCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA---------LENTDVTIVAHNSYFER 77 ++ +F + HD P+ L LE+ V + ++ Sbjct: 355 AELVGLSFSVEAGEAAYVPVAHDYEGAPEQLDRDWVLEQLKPWLEDDSKAKVGQHLKYDA 414 Query: 78 TVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131 VL D + ++ V +R + A K +G +++ Sbjct: 415 NVLNNYQITLRGIAYDTMLESYVYNSVSSRHDMNTLASKFLG-------HTCVSFEDIAG 467 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSS 180 + K +T + + Y D +T + + + P Sbjct: 468 KGAKQKTFNQI----------DLEVAAFYAAEDADITLRLHQAIWPKIETTPELVSIFKD 517 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + + G +D L H + + + +L+ + G + ++L+ Sbjct: 518 IECPLIPVLAKMEQTGALIDPELLHAQSSEIAAKLQELEIKAHEEA-GESFNLSSPKQLQ 576 Query: 241 TWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + GL + T T + +L + + +R Sbjct: 577 VILFEKQGLPVIKKTPKGQPSTAEPILQELAQDYELPRLIMEHRSL-------------- 622 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 S+ P + + R H Q IT ++DP+ Sbjct: 623 -----------------SKLKSTYTDKLPEM-IQKTGRIHTSYHQAITATGRLSSTDPNL 664 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R IA +G KLV AD + +E R++A ++ + L AF D++ Sbjct: 665 QNIPIRSAEGRRIRQAFIAPKGYKLVAADYSQVELRIMAHLSQDSGLLDAFTKDADVHKA 724 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V+ +VT +QR K + L Y A +A G+ +K Sbjct: 725 TAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMSAF---GLAKQLGIGRPEAGKYIK---- 777 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + +++ V + + ++ Sbjct: 778 -------------------------------------RYFERYPGVQQYMENTREGAKE- 799 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + V +Y GR L D+ N RQ Sbjct: 800 -----------KGYVETIY--------------GRRLYLPDIKAK----NAMMRQAAER- 829 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNA 644 +Q + DI+ M+ T +++ VHDE++ E + D E Sbjct: 830 ----TAINAPMQGSAADIIKRAMIKMHDWLQGTDLDVKMIMQVHDELIFEVAEKDLEAAQ 885 Query: 645 SMLYHLM 651 + +M Sbjct: 886 KKIVDIM 892 >gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B] Length = 832 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 95/555 (17%), Positives = 172/555 (30%), Gaps = 80/555 (14%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 258 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 317 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 318 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 377 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177 E+ + K + + + A G Y + +T + + L+P Sbjct: 378 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 427 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 428 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 486 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 487 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 531 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 532 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 580 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 581 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 640 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 641 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 697 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + N+ + E + G +++ L + Sbjct: 698 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 750 Query: 532 IENGKAIIARKRRDV 546 G A K+ V Sbjct: 751 PMQGTAADIIKKAMV 765 >gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 921 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 101/579 (17%), Positives = 180/579 (31%), Gaps = 81/579 (13%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 E+ + K T + + A G Y + +T + + E Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELDNVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T R + +++ L + Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 G A K+ V + ++ + ++L LV Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878 >gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020] Length = 921 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 101/579 (17%), Positives = 181/579 (31%), Gaps = 81/579 (13%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177 E+ + K T + + A G Y + +T + + L+P Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 178 LS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLHDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T R + +++ L + Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKTQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 G A K+ V + ++ + ++L LV Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878 >gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046] gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046] Length = 921 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 120/678 (17%), Positives = 214/678 (31%), Gaps = 165/678 (24%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56 D ET + +D + A ++ F+ FD HD + Sbjct: 352 DTET-TSLD------YRVA---QIVGFSVAFDAQDAYYVPLAHDYENAPAQLDREQILAQ 401 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 +K LE+ V + H+ ++ VL+ N I + W +LA N + + Sbjct: 402 IKPILEDESVQKIGHHLKYDAHVLE---NHGIELKGWYFDTMLASYVLNAVATRHGMDDV 458 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + S +++ + K +T + Y D VT +F+ Sbjct: 459 SRLYLSHLTTTFEQVAGKGAKQKTFNQI----------EIETAAHYAAEDAHVTYRLFEV 508 Query: 175 L------EP-----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P L + E + + + + G +D+ L L+ ++ Sbjct: 509 LDAKLQKHPELVNILHNVEMPVARVLTIMEENGIELDLGFLDQLGIEFANTMANLESQIT 568 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 L G + +++ LF + GL + T S+++ + + Sbjct: 569 ELA-GQSFNVSSPKQVGEILFDKLGL---KGGKKTATGQYSTSESVLEKIDHPITEL--- 621 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 L + G S+ Q R H Q + Sbjct: 622 -----------------------ILDYRGLSKLKSTYTDGLLKQANSDTHRVHTSYHQAL 658 Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T ++DP+ I I +R IA +G+ L+ AD + IE R++A + ++ Sbjct: 659 TATGRLSSTDPNLQNIPVREEIGRQIRKAFIAPQGRVLLAADYSQIELRLMAHFSQDEAL 718 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF+ G+D++ T A VA VT DQR K + L Y G F + G + Sbjct: 719 VDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQAKAVNFGLLY--GMSEF-GLTRQLGFS 775 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 E++ + + +P + ER ++ R Sbjct: 776 R----------------EESRGYIAKYFQRYP-------GVLDYMERTRQIAR------- 805 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 Q F +TI GR L D+ Sbjct: 806 ------EQGFVETIL-------------------------------GRRLYTPDI----M 824 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVC 634 N +Q L Q + DI+ M+ + ++L VHDE+V Sbjct: 825 ASNKMIKQAAERAAINAPL-----QGSAADIIKMAMIAVDQMLPKDQTKMLLQVHDELVF 879 Query: 635 ETPDT-DEFNASMLYHLM 651 E ++ + AS L +M Sbjct: 880 EVDESIADELASKLADVM 897 >gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] Length = 1000 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 113/650 (17%), Positives = 205/650 (31%), Gaps = 158/650 (24%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 +P+ LK LE+T V +A N ++ ++K I + T++L+ L Sbjct: 466 DALPR-LKALLEDTSVLKIAQNLKYDYLLMKRY---GIETKGFDDTMLLSYV------LD 515 Query: 111 AVGEALKLSSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 A M+ E L + + N Y D VT Sbjct: 516 GGANAT----HGMDSLSERWLGHKPIAYKDVAGSGKSNITFDLVDIDRATAYAAEDADVT 571 Query: 169 REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ L+P + E + L + + +RG +D + L+ + +L Sbjct: 572 LRLWLVLKPRLAAEKLATVYERLERPLVPVLAHMEERGITIDRQILSRLSGELAQGAARL 631 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQA 273 + E+ +L G + ++L LF + GL T+T T +VL Sbjct: 632 EDEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSAQVLEDLAAAGFELP 690 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R ++ P P Sbjct: 691 RKIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETK 719 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H T +S+P+ I +R+ I++ G KL+ AD + IE RV Sbjct: 720 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 779 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A +AF G D++ T + F V + + R K + + Y A Sbjct: 780 LAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAF-- 837 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A+ + + +K + + R E+ A + ++ T Sbjct: 838 -GLANQLSIERSEAGDYIK------RYFERFPGIRDYMESTKATARDKGYVET------- 883 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 I +R P + PS R+ Sbjct: 884 ------------------------------IFGRRVHFPEIRSSN---------PSVRAF 904 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----- 623 N R+ +N +Q + D++ M+ A D Sbjct: 905 ------NERASINAP------------------IQGSAADVIRRAMIKMEPALADAGLGD 940 Query: 624 ---IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E D D E + ++ +M + A +PLK + Sbjct: 941 RVRMLLQVHDELIFEVEDADVERSTPVIVSVMENAAMPAVNMSVPLKVDA 990 >gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia stuttgartiensis] Length = 887 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 95/554 (17%), Positives = 179/554 (32%), Gaps = 88/554 (15%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFD---------DHPVELWDCVHDPVMPQVLKEALENT 64 IDL G ++ +F ++ P D V+P+ +++ LE+ Sbjct: 317 IDLETTGTDPLKAH--IVGLSFSWEQKEAYYVPLMAPENTRHLTADIVLPE-IRKVLEDE 373 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQK 122 + N ++ VLK +I + ++A P A + S K Sbjct: 374 SKKKIGQNIKYDLLVLKKH---NIGLKGIYFDSMIASYLLNPAKRNHNLDDIAFEYLSYK 430 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 ELI G + + P +Y D +T + + + PL KE Sbjct: 431 TIMIAELI-----GSGKQQITMDKVPV-----DKVCQYACQDADITFRLAETMAPLLKKE 480 Query: 183 --QELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +L+ Y+ + G C++ ++ + + L++E+ + + Sbjct: 481 GLWQLFQEIEIPLIYVLAEMEGNGICINADFLRQMSGDLAAQLQCLEKEIYRVA-EQEFN 539 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L T+T VL+S P R A Sbjct: 540 ISSHKQLGAILFDKFQLPKLRRTKTGVSTDANVLASLAWRHPLPKLALEYRQLA------ 593 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + P + H +Q +T Sbjct: 594 -------------------------KLKSTYADALPNLLNQDTGKIHTTFNQTVTSTGRL 628 Query: 350 ITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +S+P+ I I +R I + + AD + IE R+LA + + ++AF Sbjct: 629 SSSNPNLQNIPVKTDIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDTALMEAFR 688 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ + ++V VT + R K + + Y ++ TGL+LN Sbjct: 689 EDLDIHAAVASSIYHVPLENVTTEMRRNAKAINFGIIYGLNEY---GLSRDTGLSLNDAK 745 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + R ++ E A E ++ T R K+A +++ N Sbjct: 746 DFIDA------YFTLYQGVREFRDKVVEEAKEMGYVKTLFNR-KRAIPDINAKNKRFRNL 798 Query: 524 LHQAFEQTIENGKA 537 + TI G A Sbjct: 799 AERIAINTIIQGSA 812 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%) Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYH 649 I+Q + D++ M N ++L +HDE++ E E M+ Sbjct: 803 AINTIIQGSAADLIKVAMNNIYSKLKCGDYEARMLLQIHDELLFEVGVQALEQTRIMVQE 862 Query: 650 LMT 652 M Sbjct: 863 EMG 865 >gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 101/579 (17%), Positives = 181/579 (31%), Gaps = 81/579 (13%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 E+ + K T + + A G+Y + +T + + E Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T R + +++ L + Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 G A K+ V + ++ + ++L LV Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878 >gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099] gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099] Length = 1003 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 110/637 (17%), Positives = 202/637 (31%), Gaps = 145/637 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 LK LE+ V +A N ++ ++ +D+ T++++ G P Sbjct: 476 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GIDVAPFD--DTMLISYVLDAGTPHGHGMDQL 532 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A K + K++ + + H D VT ++ Sbjct: 533 AEKWLGHTPLQLKDVTGSGKSSVGFDQVDIDKATAH----------AAEDADVTLRLWLV 582 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P + E+ L + + RG VD + L+ + +L++E+ Sbjct: 583 LKPRLAAKGLVSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQ 642 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF GL T+T T ++L ++ + Sbjct: 643 LI-GERINIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDW 701 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ P P R H Sbjct: 702 RQL-------------------------------TKLKSTYTDALPGFIHPDTRRVHTSY 730 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T +SDP+ I +R+ IA +G +LV AD + IE RVLA +A Sbjct: 731 ALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAE 790 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF G D++ T + FNV + + R K + + Y A +A+ Sbjct: 791 IPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQ 847 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + ++ +K + Sbjct: 848 LSIPREEASNYIK--------------------------------------------KYF 863 Query: 515 SRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 R + + + + E+G I +R P + PS R+ R Sbjct: 864 ERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSN---------PSIRAFNERAS 914 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 N R G + I +A+ R E ++ K ++L VHDE++ Sbjct: 915 INARL---------------QGTAADIIRRAMVR---MEEALDRAKLSARMLLQVHDELI 956 Query: 634 CETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667 ET + + E ++ H+M + P+ + +PL + Sbjct: 957 FETVEAEVEATIPVVRHVMENAAMPAVSMSVPLHVDA 993 >gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT] Length = 822 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 94/555 (16%), Positives = 171/555 (30%), Gaps = 80/555 (14%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D V ++ Sbjct: 248 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 307 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 308 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 367 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177 E+ + K + + + A G Y + +T + + L+P Sbjct: 368 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 417 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 418 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 476 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 477 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 521 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 522 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 570 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 571 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 630 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 631 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 687 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + N+ + E + G +++ L + Sbjct: 688 R--YPGVLNYMERTRAQAAEQGFVETIFGRRL-----YLPDINAKNQSLRKGAERMAINA 740 Query: 532 IENGKAIIARKRRDV 546 G A K+ V Sbjct: 741 PMQGTAADIIKKAMV 755 >gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17] gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17] Length = 926 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 91/508 (17%), Positives = 161/508 (31%), Gaps = 85/508 (16%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSAL 109 LK LE+ D V N +++ VL D + ++ V +R N AL Sbjct: 401 QLKPLLESPDHKKVGQNLKYDKNVLANHDICLEGIAEDTMVQSYVLNSVSSRHNMDALAL 460 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +GE + + L + K T L G Y D +T Sbjct: 461 HYLGE-------ETTTFESLAGKGAKQLTFNQL----------ELDKAGPYAAEDADITL 503 Query: 170 EIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L P + + L + + RG + + +Q + +L Sbjct: 504 RLHQALRPQLAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAEL 563 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274 + G + ++L+ + + GL + T T + VL Sbjct: 564 ETAAYE-AAGETFNLGSPKQLQVIFYEKLGLPVLKKTPKGAPSTAEPVLQELAHRHELPR 622 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ P R R Sbjct: 623 LLLEHRSL-------------------------------SKLKSTYTDTLPELIHHRTGR 651 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q +T +S+P+ I +R +A +G KL+ AD + IE R++ Sbjct: 652 VHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYSQIELRIM 711 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++ ++ L AF GED++ T A F V +V DQR K + L Y A Sbjct: 712 AHLSEDKGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINFGLIYGMSAF--- 768 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A + + + + +N + A ED ++ T R + Sbjct: 769 GLARQLDVERKVAQQYID------RYFERYPGVLTYMDNIRKQAHEDGYVETLFGR-RLY 821 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKA 537 + ++R +L + G A Sbjct: 822 LPEINTRNKQLQQAAERTAINAPMQGTA 849 >gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] Length = 949 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 117/653 (17%), Positives = 221/653 (33%), Gaps = 145/653 (22%) Query: 27 DVCVILFAFGFDDHPVELWDCVHD--PVMP--QVLKEALENTDVTIVAHNSYFERTVLKA 82 D ++ +F + D + ++ +E E DV+ VAHN F+ +L+ Sbjct: 392 DAELVGLSFSYRKGLAYYIPLSEDRSEAIQTLEIFREFFEKEDVSKVAHNLKFDYKILQQ 451 Query: 83 C-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 F+L + + L +G + + E + K + LI + K + Sbjct: 452 YGFSLKGLLFDTMIAHYLLNPDG-KHVIDYLSEIY--LNYKPVALESLIGKKGKNQ---- 504 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQT 191 Y D +T ++++ P KE L + Sbjct: 505 -----LTFRSLTVEEQTNYAAEDADITWQLYEVFAPQLKKENLEDLFYKVEMPLLRVLAK 559 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G +D + ++ + L+ ++ L + + +L LF + Sbjct: 560 MELEGVALDEKWLAQESIDLENDLRGLEAKIFELAD-VEFNVNSPRQLGEILFEKL---- 614 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 KL P+A + + S + KL+ + ++ L++ Sbjct: 615 ----------------KLDPKAKKTKTGQYATSEDVLQKLSAKHDI------IKYILEYR 652 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366 + P Q +R H Q + +P+ I +R Sbjct: 653 TYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAATGRLASVNPNLQNIPIRTLRGQQIRG 712 Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 +A+EGKK++ AD + IE R++A ++ E+ + AF+ GED++V+T AR F++ +VTK Sbjct: 713 AFVAAEGKKIISADYSQIELRLIAEISNEENMILAFQNGEDIHVSTAARLFDIPLEEVTK 772 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR K + + Y GA A A TGL+ A+ Sbjct: 773 TQRGQAKTVNFGIIYGQGAFAL---AEQTGLSRTE----------------AKQMIESYF 813 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 EN+P R+KK ++ + EL + +TI N K R +D+ Sbjct: 814 ENYP--------------RLKKYMGEQVQKAQEL------GYVETILNRK----RHLKDI 849 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 R+ +N +Q + Sbjct: 850 NSANFV------------------VKAHAERNAVNAP------------------IQGSA 873 Query: 607 RDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 D++ M+ + + ++L VHDE++ E P + E ++ M Sbjct: 874 ADVIKLAMIKIDQKLSELNLKTKMLLQVHDELLFEAPQEEVEMVMKLIKTEME 926 >gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250] gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 921 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 100/579 (17%), Positives = 179/579 (30%), Gaps = 81/579 (13%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPGKTKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 E+ + K T + + A G Y + +T + + E Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T R + +++ L + Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 G A K+ V + ++ + ++L LV Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878 >gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771] Length = 564 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 110/649 (16%), Positives = 200/649 (30%), Gaps = 157/649 (24%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL 109 +P+ LK LE+ V VA N ++ +LK I + T++++ A Sbjct: 31 DALPR-LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAH 86 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + K K++ N Y D VT Sbjct: 87 GMDPLSEKFLGHTPIPYKDVA----------GSGKANVTFDLVDIDRATHYAAEDADVTL 136 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ L+P + E+ L + + RG VD + L+ + +L+ Sbjct: 137 RLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARLE 196 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAI 274 E+ +L G + ++L LF + GL T+T T VL Sbjct: 197 DEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 255 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ + R ++ P P R Sbjct: 256 KIVDWRQL-------------------------------TKLKSTYTDALPGYVHPETKR 284 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H T +S+P+ I +R+ I++ G KL+ AD + IE RVL Sbjct: 285 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 344 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A KAFE G D++ T + F V + + R K + + Y A Sbjct: 345 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF--- 401 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A+ + + +K ++ + R E+ A + ++ T Sbjct: 402 GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETIFG----- 450 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +R + P + PS R+ Sbjct: 451 --------------------------------RRINYPEIRSSN---------PSVRAF- 468 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------- 622 N R+ +N +Q + D++ M+ A Sbjct: 469 -----NERAAINAP------------------IQGSAADVIRRAMIKMEPALAQAGLAER 505 Query: 623 -DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++L VHDE++ E D D + ++ +M + A + PL+ + Sbjct: 506 VRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLRVDA 554 >gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] Length = 920 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 95/606 (15%), Positives = 188/606 (31%), Gaps = 96/606 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57 T+ ID ET S YA D ++ +F ++ D + + Sbjct: 348 QTVSIDTETTS----------LYAMDAELVGLSFAVEERQAFYVPVPADRKEAEKIVNIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114 K E+ + V N ++ VL+ N + + + ++A P + + E Sbjct: 398 KPLYESEAIMKVGQNMKYDLEVLR---NYGVCLRGALFDTMIAHYLIQPELRHNMDYMAE 454 Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + ++ LI KG+ + + + + EY D +T ++ Sbjct: 455 VYLNYQTIHIDT---LIG--AKGKHQKSMRELSP-------AQVYEYAAEDADITLQLKN 502 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LEP + E L + + G +D + I+ L+ + Sbjct: 503 VLEPKLREVEAEELFYQIEMPLVPVLAEMEMNGVRIDTQSLKETSDILTRRMHDLEARIY 562 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + +++ LF + T+T T + VL + + Sbjct: 563 ELAGG-EFNIASPKQVGDMLFGRMKIIDKPKKTKTGQYVTSEEVLQQLRGKHEIVGDIL- 620 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + G + P R R H Sbjct: 621 ------------------------------DYRGLKKLLGTYVDALPKLINTRTGRIHTS 650 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I EG AD + IE RV+A ++ Sbjct: 651 FNQTVTATGRLSSSEPNLQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLS 710 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ ++AF G D++ T A+ + A VT+D+R K + Y +A Sbjct: 711 GDAHMIEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIYGITVF---GLAE 767 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ N L+ + +++ +E H + ++ Sbjct: 768 RLDIDRNEAKQLID--GYFMMFPQVKDYMEHSKEVARTHGYVETIFHR-----RRYLPDI 820 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRD 572 +S + + + G A K + + K+ ++L L + Sbjct: 821 NSHNATVRGFAERNAINAPIQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDELNFSV 880 Query: 573 VGNNRS 578 + Sbjct: 881 FPEEKE 886 >gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] Length = 927 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 109/699 (15%), Positives = 207/699 (29%), Gaps = 170/699 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL----KE 59 + +D ET S + ++ +F ++ Q + K Sbjct: 357 ISLDTETTSTNAIE----------AQLVGLSFAIEEKKAYYVPVPEQADEAQNIVNRFKA 406 Query: 60 ALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LK 117 EN V N ++ VL+ L P+ + L + L + + E L Sbjct: 407 IYENPKTLKVGQNIKYDLEVLRNYGIALQGPLFDTMVAHYLLQPE-LRHNMDFMAEVYLN 465 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + ++ LI + +N Y D +T ++ L+P Sbjct: 466 YETVHID---ALIG-------PKGKAQKNMRELAP--SEVYNYACEDADITLQLKNVLQP 513 Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + E L + + G +D A +Q+ +L+QE+ Sbjct: 514 KLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ-AA 572 Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + +++ LF E + T+T T + VL + + P + Sbjct: 573 GKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHIL----- 627 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + P PR H +Q Sbjct: 628 --------------------------DYRALKKLLGTYVDALPKLINPRTGHIHTSFNQA 661 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T +SDP+ I +R C I EG + AD + IE RV+A ++ + Sbjct: 662 VTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDAN 721 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AF G D++ T A+ +N ++VT+D+R K + Y +A + Sbjct: 722 MLDAFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGIIYGITVF---GLADRLNI 778 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 L+ + + E E A + + V Sbjct: 779 ERAEAKQLIDG------YFKMFPQVQQYMEQAKETA------------------RANGYV 814 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + +RR +P + + N + R Sbjct: 815 ETFF-------------------HRRRYLPDI----NSGNATVR-----------AIAER 840 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 + +N +Q + DI+ M+ ++L VHDE Sbjct: 841 NAINAP------------------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDE 882 Query: 632 IVCETPDTDEFNASMLYHLMTS-NPSWAKGLPLKAE-GY 668 + T++ + +M ++ +PL A+ G+ Sbjct: 883 LNFSVLPTEKEQVERI--VMEEMQAAYLLDVPLVADSGW 919 >gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804] gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii] Length = 948 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 111/639 (17%), Positives = 195/639 (30%), Gaps = 154/639 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + ++ L++ + H++ ++ V N + + +L + + VG Sbjct: 426 ERMRAWLQDPARPKLLHHAKYDAHV---FANEGVALAGIQDDTMLQAYVL--ESHRGVGL 480 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+ + + G C + +D A G Y D T ++ Sbjct: 481 N-DLAQRYLGRGGITYEELCGKGAKQIGFD------EVAVEQAGHYACEDADFTLQLHHA 533 Query: 175 LEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L P + + L + Q + G VD A + + E +L+Q Sbjct: 534 LRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHRLGQEMLQLEQRAYE 593 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L LF L + T +T + VL+ + P + Sbjct: 594 LA-GQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLTRLAQDYPLPQVLLE-- 650 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + G S+ P R R H Sbjct: 651 -----------------------------YRGLSKLKSTYTDKLPRMINARTGRVHTHYS 681 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +SDP+ I VR +A G LV AD + IE R++A ++ + Sbjct: 682 QAAVVTGRLASSDPNLQNIPVRTEAGRRVREAFVAEHG-VLVSADYSQIELRIMAHVSDD 740 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G+D++ T + F VA +V DQR K + L Y G +AS Sbjct: 741 ANLQQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIYGMGVF---GLASNL 797 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + A E+ + A + ++ T R Sbjct: 798 GITRDAAQAYIDRYFARYP------GVAQYMEHTRQLARQQGYVETVFGR---------- 841 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVG 574 L LP R+ R G Sbjct: 842 -------------------------------------------RLQLPDIRAASGPRRQG 858 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTV 628 R+ +N Q + D++ M ++A + +++ V Sbjct: 859 AERAAINAPM------------------QGTAADLIKMAMVAVQDWLDAERLATRMIMQV 900 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE++ E PD + + + L LM +PL AE Sbjct: 901 HDELILEVPDGELDAVRARLPELMCGVA--RLRVPLVAE 937 >gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] Length = 949 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 99/645 (15%), Positives = 180/645 (27%), Gaps = 159/645 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAV 112 LK LE+ + + N ++ + + F I + + T++L+ + Sbjct: 420 LKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTMLLSYAL--------F 471 Query: 113 GEALKLSSQKMEEGKELIARFCK-GETHECLYDRNK---PNHREAWRLFGEYCKGDVTVT 168 + E + L K R Y D +T Sbjct: 472 AGQHGHGMDTLSE-----RYLSHSPIPIKSLLGTGKSAITFDRVPIADAVAYAAEDADIT 526 Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++K +P + E+ L + + G VD ++ + L Sbjct: 527 LRLWKLFKPQLHQQRVTTVYETLERPLSPVLAKMEMEGVKVDRDTLSRMSNAFAQKMAAL 586 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274 + E+ L G + ++L LF + GL +T T +L Sbjct: 587 ESEIHELA-GETFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADILEDLATEHDLPA 645 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 +V + R S+ P R Sbjct: 646 RVLDWRQL-------------------------------SKLKSTYTDALQDHIHPETGR 674 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q + ++DP+ I +R +A EG L+ D + IE R+L Sbjct: 675 VHTSYVQTGANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRIL 734 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +AG +AF G+D++ T + FNV +++T D R K + + Y Sbjct: 735 AHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAINFGVIYGISGFGLA 794 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + +A+ F E P Sbjct: 795 RNLRI-------------------PRAEAQGFIDRYFERFP------------------G 817 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R+ + QT+ K + P + Sbjct: 818 IRRYMDDTVAF--AKEHGYVQTLFGRK-----------------------IHTPEIAAKG 852 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIV 625 R R+ +N +Q + D++ M+ ++ Sbjct: 853 PRAGFAKRAAINAP------------------IQGTAADVIRRAMIRMPEAIAHLPARML 894 Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWA--KGLPLKAEG 667 L VHDE++ E P++ E +M S A + L A+ Sbjct: 895 LQVHDELLFEVPESAAEDTIEAARKVMESAADPAVHLDVKLVADA 939 >gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1] gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1] Length = 978 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 105/637 (16%), Positives = 190/637 (29%), Gaps = 145/637 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA- 115 L+ L++ V + N ++ +L P + + + + A+ E Sbjct: 451 LRPLLQDPSVLKIGQNLKYDWVLLYRHGIEIAPYDDTMLISYVLEAGTQAHGMDALAERW 510 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + +E Y D VT ++K L Sbjct: 511 LGHTPVSYKE-------------VTGSGRSKVTFDMVGLERATVYASEDADVTLRLWKVL 557 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ + + + RG VD + ++ +++E+ L Sbjct: 558 KPQLAAKGLVSVYERLERPMVSVICRMEHRGIMVDRQILSRMSGDFAQTAAAMEEEIYRL 617 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF GL T++ + + A Sbjct: 618 AGG-RFTIGSPKQLGDILFGRMGLPGGAKTKSGQWSTSAQVLEELAAAGHELP------- 669 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R + + ++ P P R H T Sbjct: 670 -------------------RKIVDWRQVTKLKSTYTDALPGYIHPETGRVHTSYSLASTT 710 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ I +R+ IA+ G KL+ AD + IE RVLA +A K Sbjct: 711 TGRLSSSEPNLQNIPVRTPEGRKIRTAFIAAPGYKLISADYSQIELRVLAHVADIPELKK 770 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T + F V + + R K + + Y A +A+ + + Sbjct: 771 AFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF---GLANQLSIPRD 827 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +K + + R E E ++ T R+ H Sbjct: 828 EAGAYIK------RYFERFPGIRDYMERTKAFCREKGYVETIFG------RRAH------ 869 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 Y + +N PS R+ N R+ + Sbjct: 870 -----------------------------YPEIRSSN-----PSVRAF------NERASI 889 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLTVHDEIV 633 N +Q + DI+ MM A D ++L VHDE+V Sbjct: 890 NAP------------------IQGSAADIIRRAMMRMEAALADSGLVDVKMLLQVHDELV 931 Query: 634 CETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667 E P+ E ++ +M P+ + +PLK + Sbjct: 932 FEAPEDAIERAIPVIRTVMEGAAWPARSLSVPLKVDA 968 >gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 437 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 76/454 (16%), Positives = 146/454 (32%), Gaps = 72/454 (15%) Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGKEL 129 N ++R VL+ N I + +L N + + + K +++ Sbjct: 1 NLKYDRGVLQ---NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDI 57 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181 + T + A G Y D VT ++ ++ P + Sbjct: 58 AGKGKNQLTFNQI----------ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVF 107 Query: 182 ---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L + + G +D A+ H ++ + + +L+++ + G + ++ Sbjct: 108 ENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIA-GEAFNLSSTKQ 166 Query: 239 LKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 L+T LF + G+ T +T + VL P + R Sbjct: 167 LQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYR-------------- 212 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 G ++ P P+ R H Q +T ++DP Sbjct: 213 -----------------GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDP 255 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R IA E +V AD + IE R++A ++ ++ L AF G+D++ Sbjct: 256 NLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIH 315 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A F + VT +QR K + L Y A ++ + + Sbjct: 316 RATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAF---GLSRQLNIPRKEAQKYMD-- 370 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 E + + + E + G Sbjct: 371 LYFERYPGVLEYMERTRAQAKEQGYVETLEGRRL 404 >gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170] gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170] Length = 944 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 97/584 (16%), Positives = 199/584 (34%), Gaps = 85/584 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVA 70 D G+ ++ AF ++ D Q + E L E+ + + Sbjct: 376 DTETTGLNP--LTAELVGIAFSWEAGKGFYIPFPEDKNQAQEIIETLRPFFESEMIEKIG 433 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VL +I + +LA P + + EL Sbjct: 434 QNLKYDIKVLHKY---NIQVKGKFFDSMLAHYLINPDMRHNMDVLSETYLNYTPVSITEL 490 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181 I + K L R+ P EY D +T ++ + P ++ Sbjct: 491 IGKKGK----NQLSMRDVP-----LEKQTEYAVEDADITYQLAQHFRPELAEASTEELFN 541 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L ++ + G +D +L++ ++ + +L ++ + ++L Sbjct: 542 TIEIPLLHVLADMELEGINLDKEFLGSLSEDLNNDIKELQSKIYKEAD-QEFNIASPKQL 600 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T+T T + VLS K Sbjct: 601 GEILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHEI---------------------- 638 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +R L++ G S+ P Q R R H + Q + +++P Sbjct: 639 ---------IRNVLEYRGLSKLKSTYVDALPLQVEERTGRVHTDYMQTVAATGRLSSNNP 689 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR + E L+ AD + IE R++A ++ E ++AF+ GED+ Sbjct: 690 NLQNIPIRTERGRQVRKAFVPRDEDYTLLAADYSQIELRIIAALSEEDTMIEAFKNGEDI 749 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T ++ F+V +VT++QR+ K + + Y A +++ T L+ L++T Sbjct: 750 HASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRTEAKELIET 806 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + N+ + ++ +G ++ + + + + + Sbjct: 807 YY--KTYPKLRNYMSEQIDFARDNGYVQTVLGR-----RRYLKDINGSNAIVRGAAERNA 859 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570 G A K + ++ K + N ++L LV+ Sbjct: 860 VNAPIQGSAADIIKIAMI-NIHKKLSEGNYKTKMLLQVHDELVF 902 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 19/146 (13%) Query: 528 FEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 ++ IE + R + + +D + +L R L + + N R Sbjct: 800 AKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGRRRYL------KDINGSNAIVRG 853 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD 640 +Q + DI+ M+N K + ++L VHDE+V + + Sbjct: 854 AAERNA-----VNAPIQGSAADIIKIAMINIHKKLSEGNYKTKMLLQVHDELVFDVHKAE 908 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666 L N ++ +PL E Sbjct: 909 LEELKSLIQSEMEN-AYKLAVPLDVE 933 >gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597] gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597] Length = 935 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 106/639 (16%), Positives = 191/639 (29%), Gaps = 150/639 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK LE+ + + N ++ +LK C +D+ + A + GL Sbjct: 411 EMLKPVLEDEAILKIGQNMKYDAKILKRC-GIDVAPCDDTMLISYALNAGL-HQHGMDAL 468 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + S KEL+ T + + + Y D VT +++ Sbjct: 469 ADRYLSHTCIPIKELLG------TGKAMIT----FDKVPIDKATRYAAEDADVTLRLWQV 518 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P E+ L + + G VD ++ + L+ E+ Sbjct: 519 LKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIKVDRDTLSRMSSAFAQKMGALEAEIHE 578 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L LF + G+ +T T VL L +V + R Sbjct: 579 LA-GERFNVGSPKQLGEILFDKMGMEGGKKGKTGAYATGADVLEDLATLHELPARVLDWR 637 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ P R H Sbjct: 638 QL-------------------------------SKLKSTYTDSLQTHIHPETGRVHTSYQ 666 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + ++DP+ I +R IA EGK L+ D + IE R+LA +A Sbjct: 667 QTGANTGRLASTDPNLQNIPVRSEEGRRIREAFIAEEGKVLLSLDYSQIELRILAHIADI 726 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF+ G+D++ T + F V ++T + R K + + Y + Sbjct: 727 PALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIYGISGFGLARNLRI- 785 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +A+ F E P I+D T Sbjct: 786 ------------------PRAEAQGFIDRYFERFP--GIKDYMAET-------------- 811 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +K V ++ ++ + P + R Sbjct: 812 ---------------------TEFGKKNGYVQTLFGRR------IHTPEIDAKGPRAGFA 844 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631 R+ +N +Q + DI+ M+ A ++L VHDE Sbjct: 845 RRAAINAP------------------IQGTAADIIRRAMIRMPDAILGLPAKMLLQVHDE 886 Query: 632 IVCETPDTDEFNASMLYH-LMTSNPSWAK--GLPLKAEG 667 +V E + + + +M + A +PL + Sbjct: 887 LVFEVDEAAADEVAEVARGVMETAADPAVRIDVPLVVDA 925 >gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] Length = 940 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 105/599 (17%), Positives = 206/599 (34%), Gaps = 83/599 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70 D + A + ++ AF ++ D + K E+ ++ + Sbjct: 372 DTETTSLN--ALEAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPFKAFFEHPEIEKIG 429 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 HN ++ VL+ N DI + + ++A P A + + EL Sbjct: 430 HNLKYDLKVLR---NYDIHVKAPLFDTMIAHYLINPDMRHNMDILAETYLNYSAQSITEL 486 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----------KRLEPLS 179 I + K + + EY D +T ++ K LE Sbjct: 487 IGKKGKNQG---------TMREVSLEQQTEYAVEDADITLQLKEYFHEEMSTAKTLELYQ 537 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +DV+ +L+ + + KL+ + + G + ++L Sbjct: 538 KVELPLVSVLTNMECEGINLDVSFLKSLSVTLAEDIQKLEAAIFEVA-GENFNLASPKQL 596 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T+T T + VLS K P + + R Sbjct: 597 GLILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHPIISDILDWRSL------------ 644 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + P + P+ R H +Q + +++P Sbjct: 645 -------------------QKLQNTYVDALPNEINPKTGRVHTIYNQAVAATGRLSSNNP 685 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR I E L+ AD + IE R++A ++G++ L AF+ ED+ Sbjct: 686 NLQNIPIRTERGQQVRKAFIPRDENHVLMAADYSQIELRIIAALSGDEGMLSAFQNNEDI 745 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T ++ FNV +VT++QR K + + Y A + T LN + L++T Sbjct: 746 HSATASKVFNVPLEEVTREQRGNAKTVNFGIIYGVSAFGLSQ---QTNLNRSEAKELIET 802 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A R ++ + A ++ ++ T R ++ + +S+ + + + Sbjct: 803 YYATYPK------LRSYMQDQVDFARDNGYVSTVLGR-RRYLKDINSQNAIVRGAAERNA 855 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 G A K + + ++KN ++L LV+ + L ++ Sbjct: 856 VNAPIQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDELVFDVPKEEINTLQEMVKK 914 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 19/136 (13%) Query: 525 HQAFEQTIENGKAIIARKRRDVP-LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 ++ IE A + R + V +D + +L R L + + N Sbjct: 793 RSEAKELIETYYATYPKLRSYMQDQVDFARDNGYVSTVLGRRRYL------KDINSQNAI 846 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETP 637 R +Q + DI+ M+ ++L VHDE+V + P Sbjct: 847 VRGAAERNA-----VNAPIQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDELVFDVP 901 Query: 638 DTDEFNA-SMLYHLMT 652 + M+ M Sbjct: 902 KEEINTLQEMVKKEME 917 >gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B] gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B] Length = 935 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 98/643 (15%), Positives = 181/643 (28%), Gaps = 156/643 (24%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D MP ++LK LE+ + + N ++ + I I T++L+ Sbjct: 398 DLAEG-QMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFAR---NGIDITPIDDTMLLS 453 Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 +G + + + K L+ +DR Sbjct: 454 YALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSG----KSAITFDR------VPIDDATP 503 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++++ +P + E+ L + + G VD ++ Sbjct: 504 YAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQNGIKVDRDTLSRMSN 563 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L G + ++L LF + L +T T +L Sbjct: 564 AFSQKMAALEAEIHELA-GESFNVGSPKQLGEILFDKLSLPGGKKGKTGAYATGADILED 622 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ Sbjct: 623 LATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQ 651 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 P R H Q + +SDP+ I +R +A EG L+ D Sbjct: 652 EHIHPETGRVHTSYLQTGANTGRLASSDPNLQNIPVRSEEGRRIREAFVAEEGNVLLSLD 711 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +AG +AF G D++ T + F+V ++T + R K + + Sbjct: 712 YSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAINFGVI 771 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + +A+ F E P Sbjct: 772 YGISGFGLARNLRI-------------------PRGEAQGFIDRYFERFP---------- 802 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 RQ + + QT+ K + Sbjct: 803 --------GIRQYMDDTVNFAKD--HGYVQTLFGRK-----------------------I 829 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616 P + R R+ +N +Q + D++ M+ Sbjct: 830 HTPEIAAKGPRASFAKRAAINAP------------------IQGTAADVIRRAMVRMPDA 871 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658 ++L VHDE++ E P+ + S+ +M A Sbjct: 872 IAHLPARMLLQVHDELLFEVPEDHVDETISVAREIMEGAADPA 914 >gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 951 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 91/583 (15%), Positives = 186/583 (31%), Gaps = 80/583 (13%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68 ID G D ++ +F ++ + + + EN Sbjct: 382 SIDTETTGTEP--MDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKSMK 439 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124 V N ++ +L+ N + + + +LA P + + E L + ++ Sbjct: 440 VGQNIKYDMIILQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIYLHYQTIHID 496 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179 E R+ P Y D VT ++ LE Sbjct: 497 E-------LIGARGKNQKNMRDLPPED-----VYRYACEDADVTLKLKNVLEKELKEQGA 544 Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + I G +D +Q V ++++E+ + G + Sbjct: 545 EHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNIS 603 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ LF + + +E +T + + ++ L + Sbjct: 604 SAKQVGEVLFDKLKI-VEKAKKTKTGQYV----------------------TSEEVLQSY 640 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + G++ L++ G + P PR R H +Q +T +S+P Sbjct: 641 RSKHDIIGKI---LEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAVTATGRLSSSNP 697 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R I G + AD + IE R++A ++ ++ + AF +G D++ Sbjct: 698 NLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIH 757 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A+ + + VT D R K + Y +A G++ L+ Sbjct: 758 AATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVF---GLAERMGVSRQEAKELIDG- 813 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + + + A E+ ++ T R K+ +SR + + Sbjct: 814 -----YFETYPQVKEYMDKSIQVARENGYVETIFHR-KRFLPDINSRNGVVRGYAERNAI 867 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570 G A K +Y + NL ++L L + Sbjct: 868 NAPIQGSAADIIKVAMAH-IYQRFQAYNLKAKMILQVHDELNF 909 >gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126] gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126] Length = 936 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 101/614 (16%), Positives = 196/614 (31%), Gaps = 91/614 (14%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALE 62 D ET DL D ++ AF + D + KE LE Sbjct: 368 DTET---TDLEPT-------DAELVGLAFSYVAGEAYYVPFPADQKEAQKIADEFKEVLE 417 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121 N D+T + N ++ V++ N + + + +LA P A + Sbjct: 418 NEDITKIGQNLKYDIQVMR---NYGVRVQGKMFDTMLAHYLLDPETRHNMDVMAENYLNY 474 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177 +LI + KG + D EY D +T ++ LE Sbjct: 475 SPVSITDLIGK--KGVKQGNMRD-------VPVEDVVEYAGEDADITLQLKHILEKEIKE 525 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L E+ L Y+ + G +D +++ ++ + +++ L G Sbjct: 526 NNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIFELA-GQEF 584 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF + L T+T T + +LS A ++ R Sbjct: 585 NIASPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKLANEHEIADKILEFREY---- 640 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + P + R H + Q + Sbjct: 641 ---------------------------QKLKSTYVDALPKLISKKDGRVHTDYRQAVAAT 673 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R + E +L+ AD + IE R++A + ++ ++ Sbjct: 674 GRLSSNNPNLQNIPIRTEKGRLIRKAFVPRDENYQLMAADYSQIELRIMAAFSQDEAMME 733 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G D++ TT A+ F V V R K + + Y A +A ++ Sbjct: 734 AFKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKEVNFGIIYGISAF---GLAQNLNISRT 790 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + ++K + E E A + ++ T R K+ R +SR + Sbjct: 791 EASDIIKA------YFKEFPRVHDYMEKVKEDARANEYVTTILGR-KRWLRDINSRNQTI 843 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + G A K + + +M+K+ +++ L++ + Sbjct: 844 RGYAERNAINAPIQGSAADMIKIAMINIHKWMEKENLKSKMIMQVHDELIFDAHKDEIDK 903 Query: 580 LNTTTRQLTREYTY 593 L L + Sbjct: 904 LKDKVVDLMKNAME 917 >gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 101/579 (17%), Positives = 181/579 (31%), Gaps = 81/579 (13%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177 E+ + K T + + A G+Y + +T + + E Sbjct: 467 EIAGKGAKQLTFDQI----------AIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVGVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F V VT D R K + L Y A +A G++ V A Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFA 786 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E A E F+ T R + +++ L + Sbjct: 787 RYP------GVLDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINA 839 Query: 532 IENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLV 569 G A K+ V + ++ + ++L LV Sbjct: 840 PMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELV 878 >gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] Length = 944 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 114/642 (17%), Positives = 192/642 (29%), Gaps = 162/642 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ V + ++ V N I + T++ + A ++ Sbjct: 418 LEDETRGKVGQHLKYDAHV---FANHGIALRGITHDTMLQSYVLASHRNHGMDALAERVL 474 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K +E+ C + +D A EY D +T + + L P Sbjct: 475 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 524 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + Q + G VD + + L+QE +L G Sbjct: 525 AEDDKLRYVYERIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLALEQEAYALA-G 583 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + L + T +T + VL + P + Sbjct: 584 QPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 636 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + G ++ P P+ R H Q Sbjct: 637 ------------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 672 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R +A G +V AD + IE R++A ++G+ + Sbjct: 673 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLM 732 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A F V P +VT +QR KV+ L Y A +AS G+ Sbjct: 733 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 789 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + +R Sbjct: 790 --------------------------------------------DAAKLYIDRYFARYPG 805 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + IA +R V V+ GR L D+ Sbjct: 806 VARYMDE---------TRQIAHERGYVETVF--------------GRRLWLPDIN----G 838 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDI----V 625 N RQ +Q + D++ M+ NA K G + V Sbjct: 839 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLV 893 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P + L LM S +PL AE Sbjct: 894 MQVHDELVLEVPQDELARVRERLPELMCGVAS--LSVPLVAE 933 >gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134] gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134] Length = 941 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 105/634 (16%), Positives = 183/634 (28%), Gaps = 154/634 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 LE+ + N ++ V + + T++ + A +L + Sbjct: 423 LEDDSKPKLGQNIKYDIHVFANHGVTLCGVAQ--DTMLESYVLASHRNHGMDSLAERLLN 480 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 K +E+ C + +D + EY D VT + +++ P Sbjct: 481 LKTITYEEV----CGKGASQIGFD------QIDLARATEYAAEDADVTLRLHRKMFPQVS 530 Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + + Q I G +D + + L+Q G Sbjct: 531 AAAGLRRVYEEIEIPVSVVLQKIERNGVLIDAERLAAQSAELGQRMLSLEQAAYD-AAGQ 589 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +++ LF + L + T +T + VL + P + Sbjct: 590 PFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL-------- 641 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + G ++ P P R H Q Sbjct: 642 -----------------------DYRGLAKLKSTYTDKLPKMVNPNTGRVHTSYGQATAV 678 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R IAS G +V AD + IE R++A ++G++ L+ Sbjct: 679 TGRLASTEPNLQNIPVRTEEGRRIREAFIASPGSVIVSADYSQIELRIMAHISGDENLLR 738 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF GED++ T + F V V+ +QR KV+ L Y A +AS G+ Sbjct: 739 AFANGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMSAF---GLASNLGIERE 795 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 K + R + Sbjct: 796 AA--------------------------------------------KHYIDRYFMRYPGV 811 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSY 579 + + E G RR L LP R R+ Sbjct: 812 AQYMEDTRQTAREQGYVETVFGRR---------------LWLPDINGGSGPRRQAAERAA 856 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 +N Q + D++ M+ K ++ VHDE+V Sbjct: 857 INAPM------------------QGTAADLIKLSMIAVQGWLERDKLQTRQIMQVHDELV 898 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + + + L LM S +PL AE Sbjct: 899 LEVPQDELDVVKTRLPELMCSVAQ--LRVPLVAE 930 >gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L] gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L] Length = 996 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 117/639 (18%), Positives = 208/639 (32%), Gaps = 139/639 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG 113 + L+ LE++D V NS F+R VL C + + + +LA P + K Sbjct: 459 ESLRPILESSDYPKVLQNSKFDRLVL-RCNGIQL--AGVVFDTMLASYVLNPETSHKLSD 515 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L + + +L+ + + D + P +YC D T I Sbjct: 516 LGLHYLGIEAQSYNDLV------PKGKTIRDLDIPT-------VADYCGMDAYTTFGIVF 562 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +L L EQ L + + +G +D +Q ++ + + Q+ Sbjct: 563 KLREELEQIPALQQLLLEVEQPLEPVLAEMEYQGIRIDKDYLQQFSQELEKDLVAIKQQA 622 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVF 277 G + ++L LF + GL +T T +L+ + P + Sbjct: 623 YQDA-GEEFNLGSPKQLSQLLFEKLGLDRRKSRKTKTGYSTDATILAKLQGDHPVVDAIV 681 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R S+ P R H Sbjct: 682 EYRSL-------------------------------SKLKSTYVDALPALMRSDTKRVHT 710 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + +Q +T +S P+ I S +R I G LV AD + IE R+LA + Sbjct: 711 DFNQTVTTTGRLSSSSPNLQNIPIRTDFSRQIRKGFIPESGWLLVSADYSQIELRILAHL 770 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + E ++A++T D++ T F+ +T ++R +GK++ + Y GA Q+ A Sbjct: 771 SQEPVLVEAYQTQADVHTLTAQMLFDK--EDITAEERRLGKIINFGVIYGMGA---QRFA 825 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 ++ + + A E + AI ++ T R + Sbjct: 826 REAKVSTAEGKEFIDRLNQRYPLVFA------YLEETKKKAIAQGYVETILGRRRYFSFG 879 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 +S R+ + PL + L +S+ D Sbjct: 880 GNS------------------------LRRLQGKPLD---------QIDLDKLKSINPYD 906 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTV 628 G+ R+ N+ +Q S DI+ M+ K ++L V Sbjct: 907 AGSLRAAANSP------------------IQGSSADIIKIAMIKLYQELQKYKARLLLQV 948 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE++ E P + E + M S +PL E Sbjct: 949 HDELIFEIPPDEWEELQLKIRETMESAVE--LTVPLVVE 985 >gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] Length = 937 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 90/654 (13%), Positives = 176/654 (26%), Gaps = 158/654 (24%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D MP +LK LE+ + + N ++ + I + T++++ Sbjct: 400 DLADG-QMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFAR---RGIDVAPIDDTMLMS 455 Query: 101 RSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + + + K L+ R Sbjct: 456 YAMHAGQHGHGMDTLSERYLNHTPIPIKPLL----------GTGKSAITFDRVPIDDAVA 505 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T +++ +P + E+ L + + G VD ++ Sbjct: 506 YAAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSN 565 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L G + ++L LF + G+ +T T +L Sbjct: 566 AFAQKMAGLEAEIHELA-GQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILED 624 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 V + R S+ Sbjct: 625 LATEHALPGLVLDWRQL-------------------------------SKLKSTYTDALQ 653 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 R H Q + ++DP+ I +R + EG L+ D Sbjct: 654 DHINAETGRVHTSYVQTGANTGRLASTDPNLQNIPIRSEEGRRIREAFVPEEGNVLLALD 713 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +AG +AF G+D++ T + FNV ++T D R K + + Sbjct: 714 YSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVI 773 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +A + + Sbjct: 774 YGISGF---GLARNLRIPRAEAQGFID--------------------------------- 797 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + R + + + E+G R+ + Sbjct: 798 -----------RYFERFPGIRRYMDETVAFAKEHGHVQTLFGRK---------------I 831 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616 P + R R+ +N +Q + D++ M+ Sbjct: 832 HTPEISAKGPRAGFAKRAAINAP------------------IQGTAADVIRRAMIRMPAA 873 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E P+ E +M + A + L + Sbjct: 874 IAHLPARMLLQVHDELLFEVPEAAVEDTIETASQVMETAADPAVHLDVKLVVDA 927 >gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] Length = 958 Score = 266 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 91/583 (15%), Positives = 186/583 (31%), Gaps = 80/583 (13%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68 ID G D ++ +F ++ + + + EN Sbjct: 389 SIDTETTGTEP--MDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKSMK 446 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQKME 124 V N ++ +L+ N + + + +LA P + + E L + ++ Sbjct: 447 VGQNIKYDMIILQ---NYGVQVKGKLFDTMLAHYVLQPELRHNMDYLAEIYLHYQTIHID 503 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179 E R+ P Y D VT ++ LE Sbjct: 504 E-------LIGARGKNQKNMRDLPPED-----VYRYACEDADVTLKLKNVLEKELKEQGA 551 Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + I G +D +Q V ++++E+ + G + Sbjct: 552 EHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNIS 610 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +++ LF + + +E +T + + ++ L + Sbjct: 611 SAKQVGEVLFDKLKI-VEKAKKTKTGQYV----------------------TSEEVLQSY 647 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + G++ L++ G + P PR R H +Q +T +S+P Sbjct: 648 RSKHDIIGKI---LEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAVTATGRLSSSNP 704 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R I G + AD + IE R++A ++ ++ + AF +G D++ Sbjct: 705 NLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIH 764 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A+ + + VT D R K + Y +A G++ L+ Sbjct: 765 AATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVF---GLAERMGVSRQEAKELIDG- 820 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + + + A E+ ++ T R K+ +SR + + Sbjct: 821 -----YFETYPQVKEYMDKSIQVARENGYVETIFHR-KRFLPDINSRNGVVRGYAERNAI 874 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVY 570 G A K +Y + NL ++L L + Sbjct: 875 NAPIQGSAADIIKVAMAH-IYQRFQAYNLKAKMILQVHDELNF 916 >gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489] gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489] Length = 946 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 102/583 (17%), Positives = 200/583 (34%), Gaps = 83/583 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENTDVTIVA 70 D G+ ++ AF ++ D Q L E E+ + + Sbjct: 378 DTETTGLNP--LTAELVGIAFSWEASKGFYIPFPEDQDQAQELIEQLRPFFEDEKIEKIG 435 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VL+ ++ I +LA P A + EL Sbjct: 436 QNLKYDIKVLRKY---NLIIKGAYFDTMLAHYLINPDMRHNMDVLAETYLNYTPISITEL 492 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I + K L R P EY D +T ++ +P + Sbjct: 493 IGKKGK----NQLSMRQVPI-----EKQTEYAVEDADITYQLASHFKPELKDAKTEELFN 543 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +DV ++L++ ++ + L+ + G + ++L Sbjct: 544 DIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLETSIYE-AAGEEFNIASPKQL 602 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T+T T + VLS + Sbjct: 603 GEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEI---------------------- 640 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ L++ G ++ P Q R H + Q + +++P Sbjct: 641 ---------IKNILEYRGLAKLKSTYIDALPDQVEESTGRVHTDYMQTVAATGRLSSNNP 691 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR + E L+ AD + IE R++A ++ E ++AF+ GED+ Sbjct: 692 NLQNIPIRTERGRQVRKAFVPRDENYTLLAADYSQIELRIIAALSDETTMIEAFKNGEDI 751 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T ++ FNV QVT++QR+ K + + Y A +++ T L+ L+ Sbjct: 752 HASTASKVFNVPLDQVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGESKELIDA 808 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 +E ++M E + A ++ ++ T R ++ + +SR + + + + Sbjct: 809 -----YYETYPKLKKYMSE-LVDFARDNGYVQTVLGR-RRYLKDINSRNAVVRSAAERNA 861 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570 G A K + + N ++L LV+ Sbjct: 862 VNAPIQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVHDELVF 904 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 20/132 (15%) Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 K+ LV +D + +L R L N+R N R Sbjct: 817 KKYMSELVDFARDNGYVQTVLGRRRYL---KDINSR---NAVVRSAAERNA-----VNAP 865 Query: 602 VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654 +Q + DI+ M+N K ++L VHDE+V + T+ E +++ M + Sbjct: 866 IQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVHDELVFDAHKTELEEVRALIKTEMEN- 924 Query: 655 PSWAKGLPLKAE 666 +++ +PL E Sbjct: 925 -AYSLAVPLDVE 935 >gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P] gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P] Length = 980 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 100/582 (17%), Positives = 199/582 (34%), Gaps = 82/582 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---NTDVTIVAH 71 D G+ A +V +I AF ++ D Q + E +++ + H Sbjct: 413 DTETTGLK--ALEVELIGIAFSYETGKGYYVSFPEDQAETQRILEDFRPFFESEIEKIGH 470 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELI 130 N ++ VL +P+ + ++A P A + + ELI Sbjct: 471 NLKYDIKVLSTY---KMPVKGKLFDTMIAHYLINPDMRHNMDVLAETYLNYQPISIAELI 527 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----------EPLSS 180 + K L R+ P + EY D +T ++ + + + Sbjct: 528 GKKGK----NQLSMRSVPLKEQ-----TEYAVEDADITFQLKQLFTGELENGNVTKLFND 578 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + + G V+ L+ + + +L++ + G + ++L Sbjct: 579 IELPLVSVLTAMEIEGINVNTDFLKELSVALTADIDRLEKSIYEQA-GEEFNIASPKQLG 637 Query: 241 TWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF + L T+T T + +LS K + R Sbjct: 638 IVLFEKMELVKKPKKTKTGQYATGEDILSYLAKEHDIIKDIQEYRQY------------- 684 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + P + P+ R H + Q + +++P+ Sbjct: 685 ------------------KKLQSTYVDALPNEVNPKTGRIHTQYMQAVAATGRLSSNNPN 726 Query: 356 PLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I VR + E L+ AD + IE R++A ++ E+ + AF+ GED++ Sbjct: 727 LQNIPIRTARGREVRKAFVPRDENHVLLAADYSQIELRIIAALSEEENMINAFKNGEDIH 786 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 +T A+ FNV +VT+DQR+ K + + Y A +++ T L+ + L+ T Sbjct: 787 ASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVYGVSAF---GLSNQTDLSRSEAKELIDTY 843 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + A E ++ T R ++ + +SR + + N + Sbjct: 844 Y------ETYPKLKAYMSAQVDFAREHGYVETVLNR-RRYLKDINSRNAVVRNGAERNAV 896 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 G A K + + + + ++L LV+ Sbjct: 897 NAPIQGSAADIIKLAMINIQKRFEKEGFRSRMLLQVHDELVF 938 >gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] Length = 984 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 101/620 (16%), Positives = 189/620 (30%), Gaps = 99/620 (15%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLK 58 +D ET S + ++ + F H + L+ Sbjct: 413 LDTETTSLEPMK----------AQLVGISIAFGAGDAAYIPVAHTFAEQLDWTDIKSSLQ 462 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEA 115 LEN + + N +++ V N I + +LA + L L + E Sbjct: 463 PFLENPQLGKIGQNMKYDQHV---FANHGIALQGISGDAMLASYIVESHLGHGLDELSER 519 Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+L + E C + P EY D I + Sbjct: 520 WLQLPTITYES-------LCGKGAKQI------PFADVPLDKAAEYACQDADFALRIEQH 566 Query: 175 LEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E + + + G +D + + E +L+ E +L Sbjct: 567 LRTQMDDKQLAMYQELELPVAQVLFAMERNGVFIDSNELAQQSAQLGKELWQLENEAFAL 626 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNN 279 G + ++L+ LF + GL + + +T T + VL P + + Sbjct: 627 A-GKPFNLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDESVLEKLADDFPLPKLILQH 685 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R A + P LP R H Sbjct: 686 RSLA-------------------------------KLKSTYTDKLPEMILPATGRVHTNY 714 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + +++P+ I VR A EG+ +V AD + IE R++A ++G Sbjct: 715 AQAVAITGRLASNNPNLQNIPIRTEQGRRVRRAFCAPEGQMMVSADYSQIELRIMAHLSG 774 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + AF+ ED++ T A F V P +T +QR K + L Y + +A Sbjct: 775 DPTLQAAFQNNEDVHRRTAAEVFGVPPEHITAEQRRYAKTINFGLIYGMSSF---GLAKA 831 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + +K A E E A ++ T R + H Sbjct: 832 LGIDNMSAEMFIKRYFARYT------GVAEYMERTKEQARSLGYVETLFGR-RLYLPDIH 884 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 A ++ + + ++ + ++++ L++ LV + Sbjct: 885 GSAIRRAAAERAAINAPMQGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPE 944 Query: 575 NNRSYLNTTTRQLTREYTYG 594 + +++ Q + G Sbjct: 945 DELAHIKAQLPQWMSDVGEG 964 >gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] Length = 920 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 95/606 (15%), Positives = 187/606 (30%), Gaps = 90/606 (14%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVL 57 L +D ET + D + ++ +F ++ D + Sbjct: 348 KVLSLDTET-TSTDTMQA---------ELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIF 397 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL 116 + EN ++ V N ++ VL I I + ++A P A Sbjct: 398 RPLYENENILKVGQNIKYDYEVLAQY---GIDIKGKMFDTMIAHYLIQPELHHNMDYMAE 454 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L K ELI KG+ + + D + + EY D +T +++K LE Sbjct: 455 TLLGYKTVHIDELIG--AKGKHQKNMRDLSPTD-------IYEYASEDADITLQLYKVLE 505 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P + E L + + G C+D ++I + + + Sbjct: 506 PKLKEVNAEDLFWKIEMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALIYEQA 565 Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 + +++ LF + + T+T T + VL S + P + R Sbjct: 566 S-EKFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEASAPIVGNILKYR- 623 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G + P R H +Q Sbjct: 624 ------------------------------GIKKLLSTYIDALPKLINKRTGHIHTSFNQ 653 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R C I AD + IE R++A ++ ++ Sbjct: 654 ALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPKCLFFSADYSQIELRIMAHLSQDE 713 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF +G D++ T A+ ++V +V+ QR K + Y +A G Sbjct: 714 NMMEAFRSGHDIHRATAAKIWHVPMEEVSDAQRKKAKQANFGIIYGITTY---GLAQRMG 770 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + L+ E + + E + A E + T R ++ +S+ Sbjct: 771 IPNGEAKELI------EGYFKTFPSVKAFMEKAKQTAREKGYAETLFNR-RRYLSDINSK 823 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGN 575 + + G K + + +++ ++L L + Sbjct: 824 NGTVRGFAERNAINAPIQGTEADIIKVAMIRIWERFRRENIRSKMILQVHDELNFSVFPE 883 Query: 576 NRSYLN 581 + + Sbjct: 884 EKEKVE 889 >gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] Length = 979 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 105/649 (16%), Positives = 199/649 (30%), Gaps = 143/649 (22%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D P +P LK LE+ + + N F+ TVL+ I + T++++ Sbjct: 437 DAGGQPQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQH---GIQLKGLDDTMLMS 493 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK---PNHREAWRLF 157 + + M+E EL K + + + K + Sbjct: 494 YALDA-----------GVHGHGMDELSEL-HLGHKPISFAEVAGKGKAQITFDQVPVDRA 541 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTL 207 Y D VT ++ L+P E+ L + + G VD A+ L Sbjct: 542 TAYAAEDADVTLRLWHILKPRLVAERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARL 601 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267 + + + + E+ L G + ++L LF + L T+T + Sbjct: 602 SGDFSQKMAQYEDEIYELA-GERFNIGSPKQLGEILFDKQSLEGGRKTKTGAWSTDADTL 660 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + R L + G S+ P Sbjct: 661 EALAAKGHELPQR--------------------------VLDWRGLSKLKSTYTDALPEY 694 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 P R H T +++P+ I +R+ +A +G L+ AD + Sbjct: 695 INPETGRIHTCYSLASTSTGRLASTEPNLQNIPVRTEDGRKIRTAFVAEKGNLLISADYS 754 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA +A + KAF G D++ T + F V + R K + + Y Sbjct: 755 QIELRLLAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYG 814 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A +A+ G+ Sbjct: 815 ISAF---GLANQLGIPRQEA---------------------------------------- 831 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + ++ + + + A K V ++ ++ + L Sbjct: 832 -GEYIDRYFKRFPGI------------RAYMDDTRDFAHKNGYVETIFGRR------IHL 872 Query: 563 PSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 P+ S R+ +N + G + I +A+ R + K Sbjct: 873 PAINSKNPAEKSFMERAAINAPIQ---------GSAADIIRRAMIR---MPQALADAKLA 920 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLM--TSNPSWAKGLPLKAEG 667 ++L VHDE++ E P+ + E + ++ +M + P+ A +PL + Sbjct: 921 ARMLLQVHDELIFEVPEKEAEKTSKVVSRIMSDAAAPAVALTVPLDVDA 969 >gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] Length = 929 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 109/639 (17%), Positives = 184/639 (28%), Gaps = 149/639 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 +VLK LE+ V + N ++ L I +H T++++ + Sbjct: 402 KVLKPMLEDPAVLKIGQNIKYD---LSVFAQHKIHVHPIDDTMLISFALNAGIHGHGMDD 458 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + K K++ K + A EY D VT +++ Sbjct: 459 LSERYLGHKPITFKDVA----------GTGKAQKSFAQVALDKATEYAAEDADVTLRLWQ 508 Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P EQ L + + G VD + L+ + L+ E Sbjct: 509 ALKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVKVDRDMLSRLSADFNQRMAALEAEAH 568 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF E L T+T Sbjct: 569 EQA-GRSFNIGSPKQLGEILFDEMNLPGGKKTKTG------------------------- 602 Query: 284 SRSAVLKLNTLVEAMNSDGRL--RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A + ++E + +DG R + + S+ + R H Sbjct: 603 ---AWVTDGDVLEGLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMM 659 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 ++DP+ I +R IA EG LV AD + IE R+LA MA Sbjct: 660 AGAQTGRLSSTDPNLQNIPVRTEEGRKIRQAFIAEEGNVLVSADYSQIELRILAHMADIP 719 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF+ G D++ T + F V + R K + + Y + G Sbjct: 720 ALKQAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINFGIIYGISGF---GLGRQLG 776 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + +KT R Sbjct: 777 IPSGEANQYIKTYF--------------------------------------------ER 792 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + E G A R+ + LP +S Sbjct: 793 FPGIRQYMDETKEFARATGFVKTAFGRK---------------IHLPDIKSKGPARSFAE 837 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHD 630 R +N +Q + DI+ M+ +A ++L VHD Sbjct: 838 RQAINAP------------------IQGSAADIIKRAMIRMPEALAEAGLKAQMLLQVHD 879 Query: 631 EIVCETPDTDEFNASMLYHL-MTSN--PSWAKGLPLKAE 666 E+V E P+ + L M + PS +PL E Sbjct: 880 ELVFECPEKEAEKLIKLVQKTMAAADGPSLRLSVPLVVE 918 >gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7] gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7] Length = 946 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 108/606 (17%), Positives = 207/606 (34%), Gaps = 84/606 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEALENTDVTIV 69 D G+ ++ AF ++ P+ D V+ LK E+ + V Sbjct: 378 DTETTGLDP--LTAELVGIAFSWEKGKGFYLPIPE-DREAAQVIVDQLKPFFESASIEKV 434 Query: 70 AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 N ++ VL + + + +LA P L+ + + Sbjct: 435 GQNLKYDIKVLDKY---GVDVKGPMFDTMLAHYLINP---DMRHNMDVLAETYLNYTPQS 488 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I + L R EY D +T ++ + P Sbjct: 489 IVELIGKKGKNQLSMR-----DVDLEKQKEYAVEDADITLQLKEHFTPELASAGTDKLFK 543 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +D +L+ ++ + T+L++++ + G + ++L Sbjct: 544 DIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYEVA-GEEFNIGSPKQL 602 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T+T T + VLS K Sbjct: 603 GVILFEKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHAI---------------------- 640 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ L + G S+ P Q + R H Q + ++DP Sbjct: 641 ---------IQNVLDYRGLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLSSTDP 691 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR I E L+ AD + IE R++A ++ E+ + AF++GED+ Sbjct: 692 NLQNIPIRTERGRQVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMIAAFQSGEDI 751 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T A+ FNVA VT++QR+ K + + Y A +++ T L+ L+ T Sbjct: 752 HASTAAKVFNVALEDVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGEAKELIDT 808 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A A ++ + A E+ ++ T R ++ + +S + + + Sbjct: 809 YYATYPKLKA------YMQDQVDFARENGYVETVLGR-RRYLKDINSSNAVVRGAAERNA 861 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 G A K + + ++ N ++L LV+ D+ N+ Q Sbjct: 862 VNAPIQGSAADIIKIAMINIHKKFEEMNCKSKMLLQVHDELVF-DIHNDELEDMKKLIQG 920 Query: 588 TREYTY 593 + Y Sbjct: 921 EMQNAY 926 >gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54] gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54] Length = 889 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 119/692 (17%), Positives = 208/692 (30%), Gaps = 162/692 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFA-----FGFDDHPVELWDCVHDPVMP-----Q 55 ID ET + +D G+ V + L A + +E +P Sbjct: 318 IDTET-TSLDARTAGL------VGISLCAELDRAWYIPLAHIEATGTPVPGQLPISEVMA 370 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 VL+ L D+ V HN ++ TVLK ++I G L + Sbjct: 371 VLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLADTMVAAHLLEKGRTLKLDDLCAE 430 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + L + E++A R A + Y DV +++ Sbjct: 431 IGLE---LTSFAEVVAE----------DKRADAFAYVALKEACHYSCEDVYGALSLWQDF 477 Query: 176 -EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E LS K E + + + G C+D + L + + +L + Sbjct: 478 GEKLSDKALDGLFYDVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQIGELAATIYQ- 536 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF E GL T+T + +KL Q Sbjct: 537 EVGHEFNISSPKQLGVILFEELGLPHGRKTKTGFSTDVKVMEKLASQHPVPAL------- 589 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 L++ ++ P R + +Q IT Sbjct: 590 ---------------------ILKYRTIAKLKSTYVDKLLLLKNPETGRIYTSFNQTITA 628 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ I + +R + GK + AD + I+ RVLA +G+ + Sbjct: 629 TGRLSSSNPNMQNIPIRMEEGNRIRRAFVPEAGKVFLAADYSQIDLRVLAHYSGDDALTR 688 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T A F+V+ V + R + K + + Y A +A G+ Sbjct: 689 AFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVYGMSAF---GLAQQLGIGRK 745 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + E E + Sbjct: 746 EAQRFID------RYFHLYAGVKQFMIDIVEQTRERGY---------------------- 777 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +RR VP + K+K R R + Sbjct: 778 ---------------ATTLLGRRRAVPDID-AKNKGM--------REFA------ERMAI 807 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634 NT +Q + DI+ M+ K G ++L +HDE+V Sbjct: 808 NTP------------------IQGTAADIIKCAMIAVEKKLAAAGLGAKMLLQIHDELVF 849 Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 E + + ++ M S +PL A Sbjct: 850 EVSEAELAETRVVVQEAMESALQ--LDVPLVA 879 >gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73] gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73] Length = 968 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 118/651 (18%), Positives = 217/651 (33%), Gaps = 150/651 (23%) Query: 47 CVHDPVMPQV--------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 ++PQ+ LK LEN + + N ++ V+K DI + + T++ Sbjct: 424 LAGGRIVPQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---DIVMRSFDDTML 480 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLF 157 L+ AL+A + G + I K T+ + + + Sbjct: 481 LS------YALEAGISTHGIDVLSERWLGHKPITY--KDLTYNGK--KIVSFAQIDLKQA 530 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTL 207 Y D +T +++ L+P ++ L + + +RG VD + L Sbjct: 531 TLYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRL 590 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVL 263 + + L++E+ L G + ++L LF + GL T+ +T + L Sbjct: 591 SGELAQAALNLEEEIYQL-VGERFNIASPKQLGDILFGKMGLPGGAKTKNGQWSTSAQTL 649 Query: 264 SSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 ++ + R A + Sbjct: 650 EELATEGHILPRKIVDWRQLA-------------------------------KLKSTYTD 678 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 P L + R H T +S+P+ I +R+ IASEG L+ Sbjct: 679 ALPSYILTKTGRVHTNYSLATTSTGRLSSSEPNLQNIPARTAEGRKIRAAFIASEGHILL 738 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R+LA A +AF G+D++ T ++ F VA + D R K + Sbjct: 739 SADYSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINF 798 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + +A+ G++ N+ R E P IED Sbjct: 799 GIIYGISSF---GLANQLGISRKEAG----------------NYIRLYFERFP--GIEDY 837 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 T K + + H V ++ +R P + Sbjct: 838 MEKT------KMFARHHGYVETIF-------------------GRRIHYPEIKTAN---- 868 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 P R+ N R+ +N + G + I +A+ I E + Sbjct: 869 -----PQIRAF------NERAAINAPIQ---------GSAADIIRRAM---IQVENALEK 905 Query: 618 TKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLM--TSNPSWAKGLPLKA 665 K ++L VHDE++ E ++ A ++ +M + P+ + +PL+ Sbjct: 906 EKLSAKMLLQVHDELIFEVSKSESTKTAILIKKVMENATMPALSLSVPLEV 956 >gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60] Length = 930 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 93/532 (17%), Positives = 165/532 (31%), Gaps = 82/532 (15%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 L+ LE+ V + N ++ V+ I + +L N + Sbjct: 406 LQPLLEDEGVAKIGQNLKYDIGVMARY---GITLRGVAFDTMLESYVLNSVAGRHDMDSL 462 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K +E+ + T + EY D VT ++ +R Sbjct: 463 AARHLDHKTITFEEIAGKGKGQLTFNQI----------PLEQAAEYAAEDADVTLQLHQR 512 Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E L + + G +D A+ +Q + V L+Q+ Sbjct: 513 LWPTLEGESGPSHIFRDIDMPLIPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQQAH 572 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 S G + ++L+ LF + L + T +T + VL+ QV Sbjct: 573 SEA-GEPFNLSSTKQLQAILFEKQQLPVLKKTPGGAPSTNEEVLAELADQGYALPQV--- 628 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L++ ++ P P R H Sbjct: 629 ---------------------------ILEYRTLAKLKSTYTDKLPQMVNPLTGRVHTSY 661 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I +R IA G ++V AD + IE R++A ++G Sbjct: 662 HQAVTATGRLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHLSG 721 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L AF G+D++ T A F + V+ DQR K + L Y A +A Sbjct: 722 DKGLLAAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAF---GLARQ 778 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + E + + ++ + + G + + Sbjct: 779 LNIGRGEAQRYMD--LYFERYPGVLAYMERTRQLASDQGYVETLDGRRL-----YLPEIN 831 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 +R +A G A KR + + L P R Sbjct: 832 ARNGMRRKAAERAAINAPMQGTAADIIKRAMIAV------DGWLQEAQPEVR 877 >gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] Length = 945 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 102/596 (17%), Positives = 184/596 (30%), Gaps = 96/596 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQVL 57 L +D ET S + AE L F P + + D M + Sbjct: 375 LSLDTETTSTNTMQ-------AE-----LVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIF 422 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL 116 K E + + N ++ VL I I + ++A P A Sbjct: 423 KPLYEEDKILKIGQNIKYDYEVLAQY---GINIKGKMFDTMIAHYLIQPELHHNMDYMAE 479 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRL 175 L + K ELI K + + RN P EY D +T +++ L Sbjct: 480 TLLNYKTIHIDELIGAKGKEQKN----MRNLSPT------SIYEYACEDADITLQLYNVL 529 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P E L + + G C+D + I + ++ Sbjct: 530 LPKLKDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQIYEQ 589 Query: 226 TYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 G + +++ LF + + T+ T + VL S + +P Sbjct: 590 A-GEKFNISSPKQVGDILFGKMQIMEKPKKTKKGQYVTNEEVLQSLEASSPIV------- 641 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R L + G + P R R H + Sbjct: 642 ------------------------RNILNYRGIKKLLGTYVDALPKLINKRTGRIHTSFN 677 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +SDP+ I +R C I AD + IE R++A ++ + Sbjct: 678 QALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPECVFFSADYSQIELRIMAHLSKD 737 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF +G D++ T A+ +++ VT QR K + Y +A Sbjct: 738 ENMIEAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANFGIIYGITTY---GLAQRM 794 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ N L+ E++ + E+ E A + + T R ++ +S Sbjct: 795 GIPNNEAKKLI------EDYFNTFPKVHDFMESAKELARKKGYAETIFGR-RRYLNDINS 847 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570 + S + + G K + + ++ ++L L + Sbjct: 848 KNSTVRGFAERNAINAPIQGTEADIIKVAMIRIYERFCRENIRSKMILQVHDELNF 903 >gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15] Length = 959 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 108/642 (16%), Positives = 191/642 (29%), Gaps = 162/642 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ V + ++ V N I + T++ + A ++ Sbjct: 433 LEDASRKKVGQHLKYDAHV---FANHGIALRGIAHDTMLQSYVLASHRNHGMDALAERVL 489 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K +E+ C + +D EY D +T + + + P Sbjct: 490 HLKTITYEEV----CGKGASQIGFD------EVPLDRATEYAAEDADITLRLHRAMYPKV 539 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + Q + G +D + + +L+Q+ +L G Sbjct: 540 AEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLELEQQAYALA-G 598 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + L + T +T + VL + P + Sbjct: 599 QPFNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 651 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 F G ++ P P+ R H Q Sbjct: 652 ------------------------DFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 687 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R +A G +V AD + IE R++A ++ ++ L Sbjct: 688 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLL 747 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A F V P +VT +QR KV+ L Y A +AS G+ Sbjct: 748 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 804 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + +R Sbjct: 805 --------------------------------------------DAAKLYIDRYFARYPG 820 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + ++A +R V V+ GR L D+ Sbjct: 821 VARYMDE---------TRLVAHERGYVETVF--------------GRRLWLPDIN----G 853 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----------KAGYDI----V 625 N RQ +Q + D++ M+ K G + V Sbjct: 854 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLDGSPSTGKPGAPMRTRQV 908 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P + L LM A +PL AE Sbjct: 909 MQVHDELVLEVPQEELSLVRERLPELMCGVA--ALRVPLVAE 948 >gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1016 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 112/656 (17%), Positives = 200/656 (30%), Gaps = 171/656 (26%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------ 104 +P+ LK LE+ V VA N ++ +LK I + T++++ Sbjct: 483 DALPR-LKALLEDEAVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAH 538 Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 P + K +G GK N Y Sbjct: 539 GMDPLSEKFLGHTPIPYKDVAGSGKA-----------------NVTFDLVDIDRATHYAA 581 Query: 163 GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT ++ L+P + E+ L + + RG VD + L+ + Sbjct: 582 EDAEVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 641 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 +L+ E+ L G + ++L LF + GL T+T T +VL Sbjct: 642 QSAARLEDEIYVLA-GERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTSAQVLEDLAA 700 Query: 269 L-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + R ++ P Sbjct: 701 AGFELPRKIVDWRQ-------------------------------VTKLKSTYTDALPGY 729 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 P R H T +S+P+ I +R+ I++ KL+ AD + Sbjct: 730 VHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPRHKLISADYS 789 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA +A KAFE G D++ T + F V + + R K + + Y Sbjct: 790 QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG 849 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A +A+ + + +K ++ + R E+ A + ++ T Sbjct: 850 ISAF---GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETI 900 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 +R + P + Sbjct: 901 FG-------------------------------------RRINYPEIRSSN--------- 914 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 PS R+ N R+ +N +Q + D++ M+ A Sbjct: 915 PSVRAF------NERAAINAP------------------IQGSAADVIRRAMIKIEPALV 950 Query: 623 --------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++L VHDE++ E D D E ++ +M + A + PL+ + Sbjct: 951 EVGLADRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVDA 1006 >gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106] gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106] Length = 927 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 112/646 (17%), Positives = 201/646 (31%), Gaps = 139/646 (21%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107 + + L+ LE+ N+ F+R + K I + + +LA P Sbjct: 380 ETVLEALRPILESNKYPKALQNAKFDRLIFKVQ---GINLAGVVFDTMLASYVLNPDDSH 436 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L + S + K+L + + D + P E YC DV Sbjct: 437 NLTELSRKYLDSGILAKSYKQLSL-----SKKQTIADLDIPTAAE-------YCGLDVYA 484 Query: 168 TREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T I +L L EQ L + + +G ++V L+ ++ + Sbjct: 485 TYLIVPKLRKELQDFPELHKLLLDIEQPLEPVLAEMEYQGIRINVDYLKQLSSQLEKKLE 544 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 +++++ G + ++L LF L + +T T +VL K P Sbjct: 545 EIEKQAYQEA-GTEFNLGSPKQLSKLLFETLELSTKKSRKTKTGYSTDAKVLEKLKGDHP 603 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + +R A + P P+ Sbjct: 604 IIDSILEHRTLA-------------------------------KLKSTYVDALPELVHPQ 632 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q IT +S+P+ I S +R + G LV AD + IE Sbjct: 633 TQRIHTDFNQAITTTGRLSSSNPNLQNIPIRTEFSRQIRQAFLPEPGWLLVSADYSQIEL 692 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++ E ++A++T D++ T F VT ++R GK + + Y GA Sbjct: 693 RILAHLSDEPILVEAYKTNRDIHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGMGA 752 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + + +N N + E + E + AI ++ T R Sbjct: 753 ---LRFSREMKVNTNKAKEFI------ERFNQQYEKLFEYLEEQKKQAISQGYVTTLLGR 803 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + Y + +L + S Sbjct: 804 RR------------------------------------------YFHFESPSLKALKESP 821 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG---- 621 + D + Q R +Q S DI+ M+ Sbjct: 822 LEDIPLD---ELKKIGQNDAQFLRAAANAP------IQGSSADIIKIAMVKLRDVLQNYR 872 Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V E P + E + M +++ +PL + Sbjct: 873 AKLLLQVHDELVFEVPPEEWEELQPQIKQTMED--AYSLKVPLLVD 916 >gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] Length = 932 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 86/531 (16%), Positives = 166/531 (31%), Gaps = 68/531 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEA 115 LK LEN + V N ++ T+ I + +L + A Sbjct: 411 LKPVLENPAIQKVGQNFKYDLTIFAR---NGIDVQGVAFDTMLESYVLNSTGRHNMDDLA 467 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +E+ + T + + + ++++L Sbjct: 468 KRYLGHQTITFEEIAGKGKNQLTFNQIPLEKAAEYAAEDADVTMKLQQ------VLWEKL 521 Query: 176 EPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L + + RG +D + + ++L+++ L G Sbjct: 522 SKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSELEEQAYVLA-G 580 Query: 229 LVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + GL + +T + VL + +R Sbjct: 581 QPFNLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHELPKVLVEHR---- 636 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 G S+ P P+ R H Q +T Sbjct: 637 ---------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVT 669 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R IA EG +V AD + IE R++A ++ +Q + Sbjct: 670 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLI 729 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ +T A F VA +VT +QR K + L Y A ++ G+ Sbjct: 730 NAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAF---GLSRQLGIGR 786 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + + E A ++ T R + +S Sbjct: 787 ADAQSYMDLYFKRYP------GVQTFMHDIREKAKAQGYVETLFGR-RLYLPDINSSNGM 839 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + G A KR + L ++ ++ +++ LV+ Sbjct: 840 RRKAAERVAINAPMQGTAADIIKRAMIQLDQKLQNDPDIAMIMQVHDELVF 890 >gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18] gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18] Length = 920 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 103/600 (17%), Positives = 192/600 (32%), Gaps = 90/600 (15%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60 ID ET + D A ++ +F ++ + + Q+ K Sbjct: 351 SIDTET-TSTD---------AISAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPL 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119 E+ + + N ++ VL + + + ++A P A L Sbjct: 401 YESDKIMKIGQNIKYDYEVLTRY---GVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLL 457 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 S + +EL+ KG+ + + D + + EY D +T + LEP Sbjct: 458 SYQTIHIEELLGP--KGKKQKNMRDLSPTD-------IYEYAAEDADITLRLKNVLEPRL 508 Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + + G C+D ++I + +QE+ G Sbjct: 509 KELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEA-GE 567 Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + + T+T T + VL S + +P Sbjct: 568 EFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIV----------- 616 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R L + G + P PR H +Q +T Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALT 656 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R C I EG AD + IE R++A ++ ++ + Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMM 716 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A+ ++V +VT QR K + Y +A + Sbjct: 717 EAFREGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTY---GLAQRMDIPN 773 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 L+ E + + E+ E A + T R ++ +SR + Sbjct: 774 GEAKELI------EGYFRTFPKVQAYMEHAKEVARAKGYAETLFHR-RRYLADINSRNAT 826 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + G K V + KK+ ++L L + R Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEERE 886 >gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] Length = 911 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 112/651 (17%), Positives = 194/651 (29%), Gaps = 155/651 (23%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--N 103 D + + LK LEN D+ + N ++ +L N I + +L + Sbjct: 377 DQLDFEQVLAKLKPILENADILKLGQNLKYDSNIL---CNHGITLRGITEDTMLESYVLD 433 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 + + ALK + + +++ + K T + A Y Sbjct: 434 SVGTRHDMDSLALKYLGRGTTKFQDIAGKGAKQLTFNQI----------ALEQAAPYAAE 483 Query: 164 DVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT + + L P + E L + I G + + + Sbjct: 484 DADVTLRLHEVLSPKLKAVPRLHQLYAELEVPLVAVLSRIERNGAYISRQSLADHSHELA 543 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 L+ + L G + ++L LF + GL + T T + VL + Sbjct: 544 GRLESLEARAQELA-GQAFNLGSPKQLGEILFDKLGLPVIKKTPKGAPSTAEEVLLELAE 602 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P + R S+ P Sbjct: 603 DYPLPSVLMEYRSL-------------------------------SKLKSTYTDRLPEVI 631 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383 P R H Q +T +SDP+ I +R +A EG++++ AD + Sbjct: 632 DPDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGRRILAADYSQ 691 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ + L+AF G D++ T A F V VT DQR K + L Y Sbjct: 692 IELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELNDVTVDQRRKAKAINFGLIYGM 751 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A +A + + +P + D T Sbjct: 752 SAF---GLARQLHIGRGEAQE----------------YIERYFSRYP--GVADYMARTRA 790 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 E ++ + + H +R +P + K + Sbjct: 791 EAHERGYVETH-------------------------FGRRLQLPEINAKNKQ-------- 817 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619 R + R+ +N Q + DI+ + M+ Sbjct: 818 -------RQLAAERTAINAPM------------------QGTAADIIKKAMIAVDAWLQD 852 Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEG 667 +++ VHDE+V E +T S L LM A +PL E Sbjct: 853 SSLDALLIMQVHDELVFEVAETAVAQLSEALPSLMADVA--ALEVPLLVEA 901 >gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2] gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2] Length = 907 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 110/677 (16%), Positives = 193/677 (28%), Gaps = 166/677 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D G+ D ++ +F H H P +P L + LE+ Sbjct: 335 DTETTGLD--VMDARLVGMSFAITPHEAAYLPLAHRYPGVPDQLDLDATLARLRPWLESE 392 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123 + N +++ + N I + +L + AL+ K Sbjct: 393 QHKKLGQNLKYDKHI---FANHGIALRGISDDTLLESYVLESHKSHDMDSLALRHLGVKT 449 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------ 177 +E+ R K + + + Y D +T ++ + L P Sbjct: 450 ISYEEVAGRGAKQICFDQV----------DLDIATRYAAEDADITLQLHQSLAPEITGKT 499 Query: 178 -----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E + + G +D L H + + V+ L+ + Sbjct: 500 GLQHVYRDIELPAMQVLFVMERNGVLLDANLLHVQSHELGVKLIALEARAHE-AAEQPFN 558 Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++++ LF + L ++ T + T + VL P + Sbjct: 559 LNSPKQIQEILFDKLKLPVKKKTPSGAPSTDEEVLQELALDYPLPKILLE---------- 608 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + G ++ P R H Q + Sbjct: 609 ---------------------YRGMAKLKSTYTDKLPKMVNRATGRVHTSYSQAVAVTGR 647 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +SDP+ I +R IA G +V AD + IE R++A ++G+ L+AF Sbjct: 648 LASSDPNLQNIPIRSAEGRRIREAFIAPSGSCIVAADYSQIELRIMAHLSGDAGLLQAFA 707 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 ED++ T A F P VT +QR KV+ L Y A +A G+ Sbjct: 708 KNEDVHRATAAEIFMTTPVDVTTEQRRYAKVINFGLIYGMSAF---GLAKQLGIERGAAQ 764 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + +R + + Sbjct: 765 AYIA--------------------------------------------RYFARYPGVRDY 780 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-GNNRSYLNT 582 + EQ + G RR L LP S G R+ +N Sbjct: 781 MDSTREQAKQQGYVETVFGRR---------------LWLPEINSSNAMKRQGAERAAINA 825 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 Q + D++ M+ K +++ VHDE+V E Sbjct: 826 PM------------------QGTAADLIKLAMIQVQGWLETEKLKTRLIMQVHDELVLEV 867 Query: 637 PDTD-EFNASMLYHLMT 652 PD + + L LM Sbjct: 868 PDDELSLIKASLPGLMC 884 >gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse] gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse] Length = 968 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 109/630 (17%), Positives = 212/630 (33%), Gaps = 136/630 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V + N ++ V+K I I + T++L+ + AL Sbjct: 442 LKPILEDQAVLKIGQNIKYDWLVMKQY---GIVIRCFDDTMLLSYALD--------AGAL 490 Query: 117 KLSSQKMEE---GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + E G + IA K TH + + + Y D +T +++ Sbjct: 491 THNMDALSERWLGHKPIAY--KDLTHNGK--KITSFAQVDLKQATLYAAEDADITLRLWQ 546 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P ++ L + + +RG VD + L+ + L++E+ Sbjct: 547 VLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQILLRLSGELAQAAFILEEEIY 606 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 L G + ++L LF + L T++ + + + Sbjct: 607 QLA-GEKFNLASPKQLGGILFGKMSLPGGTRTKSGQWSTSAQTLEELAAEGHILP----- 660 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R + + ++ P L + R H I Sbjct: 661 ---------------------RKIIDWRQLAKLKSTYADALPSYILSKTGRIHTNYSLAI 699 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +S+P+ I +R+ IA +G L+ AD + IE R+LA +A Sbjct: 700 TSTGRLSSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSADYSQIELRILAHIADIIAL 759 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF G+D++ T ++ F VA + D R K + + Y A +A+ GL+ Sbjct: 760 KEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAINFGIIYGISAF---GLANQLGLS 816 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++A ++ + E P I+D T K + ++ V Sbjct: 817 R----------------QEASHYIQLYFERFP--GIKDYMEMT------KNFACRNGYVE 852 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 ++ GR + Y ++ Sbjct: 853 TIF-------------------------------------------GRRIHYPEIKAANL 869 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + + + G + I +A+ I E + K ++L VHDE++ E P+ Sbjct: 870 QVRSFNERAAINAPIQGSAADIIRRAM---IQMENALEKEKLSAKMLLQVHDELIFEVPE 926 Query: 639 TD-EFNASMLYHLM--TSNPSWAKGLPLKA 665 + E +++ +M + P + +PL+ Sbjct: 927 DESERTMALVKKVMENATMPVLSLSVPLEV 956 >gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] Length = 932 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 126/699 (18%), Positives = 217/699 (31%), Gaps = 172/699 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------VHDPVMPQ 55 ++ID ET S A + ++ +A + + + Sbjct: 359 IYIDLETTSVT----------AMEADIVGWAVAAKPGEAFYIPVRGPAGQQTMDNQEVLD 408 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + + LEN + I N ++ V K I + + ++ L A + Sbjct: 409 IFRPLLENPRIAISNQNIKYDLLVWKRH---GIELQKIGMDPMVGHYL-----LDAGARS 460 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174 LSS E K + + +N+ E EY D +I Sbjct: 461 HGLSSLADEFLKHRMI----PISELIGTGKNQKRMDEIDIDQVAEYASEDADAALQIADI 516 Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + EQELW L Q + G VD +++V +L +ELE Sbjct: 517 IRDKL-HEQELWNLYQDVERPLIGVLAEMEFAGIRVDDEELFRQSELVGRRVEELLEELE 575 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280 + + ++L+ LF E GL ++ T+T T Q VL L P ++ R Sbjct: 576 GMAD-RPFNPDSPKQLREVLFDEIGLPVQKRTKTGPSTDQSVLEKLAPLHPLPAKIIEYR 634 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + P + R H + Sbjct: 635 QLA-------------------------------KLKGTYLDSLPKLINQQTGRIHASFN 663 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q++ +SDP+ I VR I E G +L+ D + IE RVLA +G Sbjct: 664 QVVAATGRLSSSDPNLQNIPIRTPEGRQVRKAFIPGEPGWELLCCDYSQIELRVLAHFSG 723 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF++G+D++ A F V A V D R + K + + Y +A+ Sbjct: 724 DAALQEAFQSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVNFGVIYGQSPY---GLAAA 780 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + A + + Sbjct: 781 LNIPQEQAAEFIDDYFMR-----------------------------------------Y 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 VS+ + + EQ +G A RR + K+ +P Sbjct: 800 PGVSQF---IEETLEQCARSGYAYTMLGRR--RPITGIKNTGGRNRNMP----------- 843 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 R+ +NT ++Q + D++ M+N + ++L + Sbjct: 844 -ERTAINT------------------VIQGSAADLIKLAMLNVHRELATSGLSARMLLQI 884 Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 HDE+V ETP + L H M + +PL + Sbjct: 885 HDELVFETPVEELEPLRELVHREMVNAHP--LSVPLVVD 921 >gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42] gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CFN 42] Length = 999 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 112/656 (17%), Positives = 201/656 (30%), Gaps = 171/656 (26%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------ 104 +P+ LK LE+ V VA N ++ ++K + + T++++ Sbjct: 466 DALPR-LKALLEDESVLKVAQNLKYDYLLMKRY---GVETKSFDDTMLISYVLDAGTGAH 521 Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 P + K +G GK N Y Sbjct: 522 GMDPLSEKFLGHTPIPYKDVAGSGKA-----------------NITFDLVDIDRATHYAA 564 Query: 163 GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT ++ L+P + E+ L + + RG VD + L+ + Sbjct: 565 EDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 624 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 +L+ E+ +L G + ++L LF + GL T+T T VL Sbjct: 625 QGAARLEDEIYTLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAA 683 Query: 269 L-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + R ++ P Sbjct: 684 AGFELPRKIVDWRQL-------------------------------TKLKSTYTDALPGY 712 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 P R H T +S+P+ I +R+ I++ G KL+ AD + Sbjct: 713 VHPETRRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA +A KAFE G D++ T + F V + + R K + + Y Sbjct: 773 QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG 832 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A +A+ + + +K ++ + R E+ A + ++ T Sbjct: 833 ISAF---GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETI 883 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 +R + P + Sbjct: 884 FG-------------------------------------RRINYPEIRSSN--------- 897 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 PS R+ N R+ +N +Q + D++ M+ A Sbjct: 898 PSVRAF------NERAAINAP------------------IQGSAADVIRRAMIKMEPALA 933 Query: 623 --------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++L VHDE++ E D D E ++ +M + A + PLK + Sbjct: 934 EAGLAERVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLKVDA 989 >gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] Length = 905 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 125/637 (19%), Positives = 192/637 (30%), Gaps = 154/637 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ + H++ ++ V N I + +L + + VG Sbjct: 385 LKPWLEDASRAKLLHHAKYDAHV---FANEGIALAGITDDTMLQAYVL--ESHRGVGLN- 438 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L+ + + C + +D A G Y D T ++ L Sbjct: 439 DLAQRYLGRSGISYEDLCGKGAKQIGFD------EVAVDKAGHYAAEDADFTLQLHHVLR 492 Query: 177 PLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P+ + + L + Q TI G VD + + E +L+Q+ L Sbjct: 493 PMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEELGRQSHKLGQEMLRLEQKAYELA 552 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF L + T +T + VL+ P + R Sbjct: 553 -GQPFNLNSPKQLGEILFDRMQLPVVRKTASGAPSTDEDVLTKLALDYPLPQVLLEYR-- 609 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 G S+ P P R H Q Sbjct: 610 -----------------------------GLSKLKSTYTDKLPRMINPATGRVHTRYSQA 640 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +SDP+ I VR IA +G L+ AD + IE R++A ++ + Sbjct: 641 AVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-MLLSADYSQIELRIMAHVSDDAN 699 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 AF GED++ T A F VA A V+ DQR K + L Y G +AS G+ Sbjct: 700 LQSAFAAGEDIHRATAAEVFGVALADVSTDQRRAAKAINFGLIYGMGVF---GLASNLGI 756 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + A EN A E ++ T R Sbjct: 757 TRDAAQAYIDRYFARYP------GVAMYMENTRRLAREQGYVETVFGR------------ 798 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNN 576 L LP R R G Sbjct: 799 -----------------------------------------RLQLPEIRGASGPRRQGAE 817 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHD 630 R+ +N Q + D++ M + A K +++ VHD Sbjct: 818 RAAINAPM------------------QGTAADLIKLAMVAVQDWLEAEKLQTRMIMQVHD 859 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E PD + E L LM S +PL AE Sbjct: 860 ELVLEAPDNEIEVVKEALPRLMCSVAE--LRVPLVAE 894 >gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 933 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 98/568 (17%), Positives = 170/568 (29%), Gaps = 85/568 (14%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F PV+L D H L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTHALA---QLAPLLT 415 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V V + ++ V++ + + + +L + + Sbjct: 416 DPAVRKVGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 462 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 M+ + + K E + P + + Y D +T + L P + Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLA 522 Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G CVD A + + Q+ L G Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 582 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 629 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L++ G ++ P P+ R H Q Sbjct: 630 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 730 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 731 AFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL 548 +A G A KR V + Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVKV 868 >gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551] gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551] Length = 946 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 113/642 (17%), Positives = 191/642 (29%), Gaps = 162/642 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ V + ++ V N I + T++ + A ++ Sbjct: 420 LEDETRGKVGQHLKYDAHV---FANHGIALRGITHDTMLQSYVLASHRNHGMDALAERVL 476 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K +E+ C + +D A EY D +T + + L P Sbjct: 477 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 526 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + Q + G VD + + L+QE +L G Sbjct: 527 AEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLALEQEAYALA-G 585 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + L + T +T + VL + P + Sbjct: 586 QPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 638 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + G ++ P P+ R H Q Sbjct: 639 ------------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 674 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R +A G +V AD + IE R++A ++G+ + Sbjct: 675 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLM 734 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A F V P +VT +QR KV+ L Y A +AS G+ Sbjct: 735 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 791 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + +R Sbjct: 792 --------------------------------------------DAAKLYIDRYFARYPG 807 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + IA +R V V+ GR L D+ Sbjct: 808 VARYMDE---------TRQIAHERGYVETVF--------------GRRLWLPDIN----G 840 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDI----V 625 N RQ +Q + D++ M+ NA K G + V Sbjct: 841 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLV 895 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P + L LM +PL AE Sbjct: 896 MQVHDELVLEVPQDELARVRERLPELMCGVAL--LSVPLVAE 935 >gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] Length = 928 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 95/511 (18%), Positives = 160/511 (31%), Gaps = 74/511 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEA 115 LK L + V V HN ++ V+ + + + T++L+ + G Sbjct: 406 LKPLLADPSVLKVGHNIKYDMQVMAMQ---GLAVEPFDDTMLLSYALDGASHGHGLDELC 462 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L E+ C ++ +DR +Y D +T + L Sbjct: 463 LLHLGHANIPFSEV----CGSGRNQVTFDR------VPLDKARDYAAEDADMTLRLHALL 512 Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ L + + G VD A L++ T+L+ E+ +L Sbjct: 513 KPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLMALSEDFGRRLTELETEVIAL 572 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF L T+T T VL L ++ + R Sbjct: 573 NNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVLEELAPLHALPARLLDWRQ 632 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ Q P R H Sbjct: 633 L-------------------------------SKLKGTYTDALVAQINPATGRVHTSYSL 661 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T +SDP+ I +R +A GKKLV AD + IE R++A +A Sbjct: 662 AATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKKLVSADYSQIELRLVAHVAEIA 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 AF G D++ T ++ F V + R K + + Y A +A+ G Sbjct: 722 GLRDAFAHGADIHAITASQVFGVPLDGIDPALRRRAKAINFGIIYGISAF---GLAAQLG 778 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + ++ A + + R E E A + F+ T R K + Sbjct: 779 IPQGEAKAYIEAYFAR--YPE----IRAYMERTKEEARDQGFVTTLFGR-KVFTPGIKDK 831 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + +A G A KR + Sbjct: 832 NGAMRAFAERAAINGPIQGGAADIIKRAMIR 862 >gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 923 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 399 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+ E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + G + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T E+++N+ + + +P + Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT--DEFNASMLYHLM 651 E+V E DE + + +M Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899 >gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957] gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957] Length = 960 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 114/642 (17%), Positives = 193/642 (30%), Gaps = 162/642 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ + V + ++ V N I + T++ + A ++ Sbjct: 434 LEDEIRSKVGQHLKYDAHV---FANHGIALRGIAHDTMLQSYVLASHRNHGMDALAERVL 490 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K +E+ C + +D A EY D +T + + L P Sbjct: 491 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 540 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + Q + G VD + + L+QE +L G Sbjct: 541 AEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGHRLLALEQEAYALA-G 599 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + L + T +T + VL + P + Sbjct: 600 QPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 652 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + G ++ P P+ R H Q Sbjct: 653 ------------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 688 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R +A G +V AD + IE R++A ++G+ + Sbjct: 689 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLM 748 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A F V P +VT +QR KV+ L Y A +AS G+ Sbjct: 749 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 805 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + +R Sbjct: 806 --------------------------------------------DAAKLYIDRYFARYPG 821 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + IA +R V V+ GR L D+ Sbjct: 822 VARYMDE---------TRQIAHERGYVETVF--------------GRRLWLPDIN----G 854 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDI----V 625 N RQ +Q + D++ M+ NA K G + V Sbjct: 855 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLV 909 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P + L LM S +PL AE Sbjct: 910 MQVHDELVLEVPQDELARVRERLPELMCGVAS--LSVPLVAE 949 >gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii SDF] gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii] Length = 923 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+ E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + G + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T E+++N+ + + +P + Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT--DEFNASMLYHLM 651 E+V E DE + + +M Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899 >gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] Length = 946 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 105/610 (17%), Positives = 193/610 (31%), Gaps = 92/610 (15%) Query: 7 DFETRSPIDLTK---CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQV 56 D ET + ID+ K G F+ + V M V Sbjct: 381 DVET-TDIDVMKAVPVG------------FSLSWKAGEAWYVPLVAGGKTVSNEKAMKAV 427 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +K+ LEN + ++ N ++ V+ T+V A L + Sbjct: 428 VKKHLENPALGVIGQNLKYDYKVMARWGVRIANP--VFDTMVAAWL------LDSASGIY 479 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + + T++ + + +Y D VT +++ Sbjct: 480 NMDKLADKYLGYVT------ITYDQVVPKGALFSDVPLDKAVQYAAEDADVTWRLYETFA 533 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P+ ++ E L + + G +DV + +D K+ +E+ L Sbjct: 534 PMLAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKITREIYELC 593 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G + ++L+T LF E GL + T + + + +KL Sbjct: 594 -GHEFNINSPKQLQTVLFGERGLPVGRKTASGPSTAVETLEKLVGLDPVPAL-------- 644 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L + G + P Q R H Q T Sbjct: 645 --------------------ILDYRGLVKLKNTYIDALPEQVDVNTGRVHTTFIQTGTAT 684 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +RS + G + AD A IE VLA + G++ +A Sbjct: 685 GRLASRNPNLQNIPIRNDDGRRIRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREA 744 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G+D++ T + FNV P VT DQR I K + + Y ++++ ++ + Sbjct: 745 FLAGQDVHRHTASLIFNVKPEDVTPDQRRIAKTINFGVMYGMSTF---RLSNELAISHSQ 801 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + + + + + F ++ E G ER R + Sbjct: 802 AAEFIDS--YFKRYHGVKTFVDETRKKAEETGFVSTMFGH--ERHVPEIRSSNRMEK--- 854 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYL 580 + + TI G A K + + KD N L+L L++ L Sbjct: 855 SGAERVVVNTIIQGTAADIMKLAMLRISRSLKDSGINARLLLQVHDELIFEVASGQEEKL 914 Query: 581 NTTTRQLTRE 590 + + + Sbjct: 915 SVLVKDAMEK 924 >gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36] gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36] Length = 951 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 106/687 (15%), Positives = 218/687 (31%), Gaps = 156/687 (22%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTI 68 ID G D ++ +F ++ + + + EN Sbjct: 382 SIDTETTGTEP--MDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKSMK 439 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 V N ++ +L+ N + + + +LA P M+ E Sbjct: 440 VGQNIKYDMIILQ---NYGVQVKGKLFDTMLAHYVLQPE-----------LRHNMDYLAE 485 Query: 129 LIARFCKGETHE--CLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS------ 179 + + + +N+ N R+ Y D VT ++ LE Sbjct: 486 IYLHYQTIHIDKLIGARGKNQKNMRDLSPEDVYRYACEDADVTLKLKNVLEKELKEQGAE 545 Query: 180 ----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 E L + I G +D +Q V ++++E+ + G + Sbjct: 546 HLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNISS 604 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 +++ LF + + +E +T + + ++ L + Sbjct: 605 AKQVGEVLFDKLKI-VEKAKKTKTGQYV----------------------TSEEVLQSYR 641 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + G++ L++ G + P PR R H +Q +T +S+P+ Sbjct: 642 SKHDIIGKI---LEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAVTATGRLSSSNPN 698 Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I G + AD + IE R++A ++ ++ ++AF +G D++ Sbjct: 699 LQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGHDIHA 758 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T A+ + + VT D R K + Y +A G++ Sbjct: 759 ATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVF---GLAERMGVSR----------- 804 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 ++A+ E +P ++ + ++ + Sbjct: 805 -----QEAKELIDGYFETYP----------------------------QVKEYMDKSIQV 831 Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 E G I ++R +P + + R+ V R R+ +N Sbjct: 832 AREQGYVETIFHRKRFLPDI--------------NSRNGVVRGY-AERNAINAP------ 870 Query: 590 EYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M A ++L VHDE+ P+ + E Sbjct: 871 ------------IQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKEL 918 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE-GY 668 ++ M ++ +PLKA+ G+ Sbjct: 919 VQKIVIEEMEQ--AYRMQVPLKADCGW 943 >gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] Length = 923 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 399 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+ E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + G + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T E+++N+ + + +P + Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT--DEFNASMLYHLM 651 E+V E DE + + +M Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899 >gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000] gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000] Length = 946 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 105/629 (16%), Positives = 184/629 (29%), Gaps = 136/629 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ V + ++ V N I + T++ + A ++ Sbjct: 420 LEDAARKKVGQHLKYDAHV---FANHGIALRGIAHDTMLQSYVLASHRNHGMDALAERVL 476 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K +E+ C + +D EY D +T + + L P Sbjct: 477 HLKTITYEEV----CGKGASQIGFD------EVPLDRATEYAAEDADITLRLHRALYPKV 526 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + Q + G +D + + +L+Q+ +L G Sbjct: 527 AEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLELEQQAYALA-G 585 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + L + T +T + VL + P + Sbjct: 586 QPFNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 638 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 F G ++ P P+ R H Q Sbjct: 639 ------------------------DFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 674 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R +A G +V AD + IE R++A ++ ++ L Sbjct: 675 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLL 734 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A F V P +VT +QR KV+ L Y A +AS G+ Sbjct: 735 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 791 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKHSRVS 518 + + + R+M E A E ++ T R + W + Sbjct: 792 DAAKLYID-----RYFARYPGVARYMDETRL-VAHERGYVETVFGR--RLWLPDINGGNG 843 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 +A G A K + Sbjct: 844 PRRQAAERAAINAPMQGTAADLIKLSML-------------------------------- 871 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 + GK + +R ++ VHDE+V E P Sbjct: 872 ----AVQDWLDGSPSAGKPGAPMR---TRQVM----------------QVHDELVLEVPQ 908 Query: 639 TD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + L LM S +PL AE Sbjct: 909 EELSLVRERLPELMCGVAS--LRVPLVAE 935 >gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] Length = 944 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 113/642 (17%), Positives = 191/642 (29%), Gaps = 162/642 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ V + ++ V N I + T++ + A ++ Sbjct: 418 LEDETRGKVGQHLKYDAHV---FANHGIALRGITHDTMLQSYVLASHRNHGMDALAERVL 474 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K +E+ C + +D A EY D +T + + L P Sbjct: 475 HLKTITYEEV----CGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPKV 524 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + Q + G VD + + L+QE +L G Sbjct: 525 AEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLALEQEAYALA-G 583 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + L + T +T + VL + P + Sbjct: 584 QPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 636 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + G ++ P P+ R H Q Sbjct: 637 ------------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA 672 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R +A G +V AD + IE R++A ++G+ + Sbjct: 673 VTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLM 732 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A F V P +VT +QR KV+ L Y A +AS G+ Sbjct: 733 RAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAF---GLASNLGIGR 789 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + +R Sbjct: 790 --------------------------------------------DAAKLYIDRYFARYPG 805 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + IA +R V V+ GR L D+ Sbjct: 806 VARYMDE---------TRQIAHERGYVETVF--------------GRRLWLPDIN----G 838 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDI----V 625 N RQ +Q + D++ M+ NA K G + V Sbjct: 839 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLV 893 Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E P + L LM +PL AE Sbjct: 894 MQVHDELVLEVPQDELARVRERLPELMCGVAL--LSVPLVAE 933 >gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1] gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1] Length = 943 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 201/583 (34%), Gaps = 83/583 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70 D G+ A +V ++ AF ++ D + + + E+T + V Sbjct: 375 DTETTGLK--ALEVELVGIAFSWEKGKGYYVAFPEDQSETTAILEEFRPFFESTTIEKVG 432 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VL N D+P+ + ++A P + + + EL Sbjct: 433 QNLKYDIKVLS---NYDMPVKGQLFDTMIAHYLINPDMRHNMDVLSETYLNYQPVSIVEL 489 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----------EPLS 179 I + K L R P EY D +T ++ + + S Sbjct: 490 IGKKGK----NQLSMRQVP-----LEQQTEYAVEDADITYQLKEHFIKELESGHLTKLFS 540 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +D L++ + V+ +L++++ G + ++L Sbjct: 541 DVEVPLVSVLSAMEIEGINLDPDFLGELSKALAVDIDRLEKDIYEQA-GEEFNIGSPKQL 599 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T+T T + VLS K + R Sbjct: 600 GPILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHQIVADILEWRQY------------ 647 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + P + P+ +R H Q + +++P Sbjct: 648 -------------------RKLQSTYVDALPNEINPKTNRIHTVYAQAVAATGRLSSNNP 688 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR + E L+ AD + IE R++A ++ E ++AF+ G D+ Sbjct: 689 NLQNIPIRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSKEDTMMQAFKDGADI 748 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T +R FNV +VT++QR+ K + + Y A +++ T L + L+ T Sbjct: 749 HASTASRVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLTRSESKELIDT 805 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + N A E+ ++ T R ++ + +SR + + + Sbjct: 806 YY------ETYPKLKAYMSNQVAFARENGYVETVLGR-RRYLKDINSRNAIVRGAAERNA 858 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 G A K + + +++ ++L LV+ Sbjct: 859 VNAPIQGSAADIIKLAMINIYNRFEEEGFKSKMLLQVHDELVF 901 >gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735] gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735] Length = 920 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 114/701 (16%), Positives = 207/701 (29%), Gaps = 170/701 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET S + D ++ F ++H +P +EAL Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYV------AIPNDREEAL 391 Query: 62 ----------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK 110 E+ + + N ++ VLK N + + + +LA P Sbjct: 392 QYVNIFKPVYEDPSILKIGQNLKYDYEVLK---NYGVTLGGKMFDTMLAHYVIQPELHHN 448 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169 A L K ELI +++ + R+ + EY D +T Sbjct: 449 MDYMAETLLHYKTIHIDELI----------GPRGKHQKSMRDLDPKDVYEYAAEDADITL 498 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ LEP + E L + + G +D H + I +L+ Sbjct: 499 QLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLE 558 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAI 274 Q++ G + +++ LF + + T+T T + VL S + P Sbjct: 559 QQIYEKA-GETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLRAKHPIVA 617 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + G + P R Sbjct: 618 DIL-------------------------------DYRGLKKLLGTYVEALPKLINKRTGH 646 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T +SDP+ I +R C + + AD + IE R++ Sbjct: 647 IHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIM 706 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++G++ ++AF G D++ T A+ ++ A VT ++R K + Y Sbjct: 707 AHLSGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTY--- 763 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A ++ L+ E + R E E A + T R ++ Sbjct: 764 GLAQRMEIDNREARELI------EGYFATFPKVRAYMEQAKEEARRKGYAETLFGR-RRY 816 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 S+ + + G K + Sbjct: 817 LPDITSKNGTVRGFAERNAINAPIQGSEADIIKIAMI----------------------- 853 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R R ENI ++L VH Sbjct: 854 ---------------RIWQRFK------AENIR-------------------SKMILQVH 873 Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 DE+ PD E ++ M ++ +PL A+ G+ Sbjct: 874 DELNFSVYPDEKERVEKIVLEEMQG--AYQLQVPLIADAGW 912 >gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9] gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9] Length = 932 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 115/677 (16%), Positives = 196/677 (28%), Gaps = 162/677 (23%) Query: 27 DVCVILFAFGFDDHPVELWDCVH--DPVMPQ--------VLKEALENTDVTIVAHNSYFE 76 ++ +F H V PQ LK LEN V N+ ++ Sbjct: 370 QARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLAQLKPWLENPAAAKVLQNANYD 429 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 R VL N I + +L + V + + + +EL K Sbjct: 430 RHVLA---NHGIRLAGVADDTML---------MDYVLASHERHNMDAMAERELGLATIKY 477 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE---------PLSSKEQELWY 187 E R Y D VT + L SS E Sbjct: 478 EDICGKGARQIGFAEVDLDTATRYAAEDADVTLRLRDVLAGKLDGARDTLYSSIELPTAA 537 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G +D A +Q++ E ++ E+ L G + ++L LF + Sbjct: 538 VLFAMERTGVLIDRAELARQSQVLGEEMLAIETEVYELA-GQPFNLNSPKQLSDILFNKL 596 Query: 248 GLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + + + +T T + VL + P + R Sbjct: 597 AIDTKGVKKTASGGYSTDESVLEKLAEDYPLPKALLRYR--------------------- 635 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360 G ++ P P R H Q +SDP+ I Sbjct: 636 ----------GLAKLKSTYTDKLPAMINPDTGRVHTHYSQASVVTGRLASSDPNLQNIPI 685 Query: 361 ----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 VR +A G +V AD + IE R++A ++G+ + AF G D++ T + Sbjct: 686 RTDEGRRVREAFVAPAGSCIVSADYSQIELRIMAHLSGDAGLIAAFREGRDIHRATASEV 745 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V V+ +QR K + L Y A +A + ++ Sbjct: 746 FGVPLEAVSAEQRRYAKTINFGLIYGMSAF---GLAKSLEIDNKA--------------- 787 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 A+ F +P ++D T ++ W + Sbjct: 788 -AQTFIERYFARYP--GVQDYMQRTREAAREQGW------------------------VE 820 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 + R+ L LP RS Sbjct: 821 TVFGRR-----------------LYLPEIRSSNAARRAGAERAA---------------- 847 Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYH 649 +Q + D++ M+ + +++ VHDE+V E P+ + + L Sbjct: 848 -INAPMQGTAADLIKLAMIRVADWLQREQLASRLIMQVHDELVLEVPEAERERVCAALPQ 906 Query: 650 LMTSNPSWAKGLPLKAE 666 M + A +PL AE Sbjct: 907 EMAAVAGLA--VPLVAE 921 >gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1] gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] Length = 994 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 110/637 (17%), Positives = 198/637 (31%), Gaps = 142/637 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 VL+ LE+ V +A N ++ V+ ++I + T++L+ + E Sbjct: 466 DVLRPMLEDAGVLKIAQNLKYDWLVMARY-GVEIAPYD--DTMLLSYVLDAGKGGNGMDE 522 Query: 115 -ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + KE+ T + + Y D VT +++ Sbjct: 523 LAERWLDHTPIPFKEVAGSGKAMVTFDKV----------PIDKATAYAAEDADVTLRLWR 572 Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P E+ + + + RG VD + L+ L+ E+ Sbjct: 573 VLKPRLVAERMATVYETLERPMVPVLARMERRGISVDRQMLSRLSGDFAQGMAALEAEIH 632 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278 +L G + ++L LF + GL T+T T VL ++ Sbjct: 633 ALA-GESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSVSVLDDLAAEGHELPSKIVA 691 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P P R H Sbjct: 692 WRQL-------------------------------SKLKSTYSDALPSYIHPETKRVHTS 720 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 T +S+P+ I +R +A +G+KL+ AD + IE RVLA MA Sbjct: 721 YSLASTTTGRLSSSEPNLQNIPVRTEEGRKIRKAFVADKGRKLISADYSQIELRVLAHMA 780 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +AF G D++ T + F V + R K + + Y A +A+ Sbjct: 781 DIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAF---GLAA 837 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 GL+ +KT + ++ Sbjct: 838 QLGLSRGEAGDYIKT-----------------------------------------YFER 856 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + + + T + RK + PS R+ Sbjct: 857 FPGIRDYMEAIKKEV-HTKGYVTTVFGRKAHYPDVNTSN----------PSLRAFY---- 901 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 R+ +N + G + I +A+ R + + A K +++L VHDE++ Sbjct: 902 --ERAAINAPIQ---------GSAADIIRRAMVR---MDAALAAAKLDAEMLLQVHDELI 947 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 E P+ E ++ +M + A L PL+ + Sbjct: 948 FEVPEDQVEATIPVVRRVMETATEPALTLSVPLQVDA 984 >gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 964 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 90/598 (15%), Positives = 177/598 (29%), Gaps = 86/598 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVA 70 D G D ++ +F ++ + + + +N V Sbjct: 397 DTETTGTDP--MDAELVGMSFSIAENQAFYIPVPAGREEATKIVREFESVFKNDKSLKVG 454 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127 N ++ VL+ N I I + ++A P + + E + + Sbjct: 455 QNIKYDMLVLQ---NYGIEIRGRLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 509 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181 ELI +N + Y D VT ++ LE K Sbjct: 510 ELIG-------PRGKGQKNMRDLSPKD--VYLYACEDADVTLKLKNILEQELKKNDAEKL 560 Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + I G +D ++ +++E+ +L G + + Sbjct: 561 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLA-GEEFNIASPK 619 Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF + + T+T T + VL S + ++ R Sbjct: 620 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYR------------ 667 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 G + P PR R H +Q +T +S Sbjct: 668 -------------------GLKKLLSTYIDALPQLINPRTGRIHTSFNQTVTATGRLSSS 708 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I +R I +G AD + IE R++A ++ ++ + AF +G D Sbjct: 709 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSGYD 768 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A+ + V +VT D R K + Y +A ++ L+ Sbjct: 769 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 825 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 E + + + + EH + K+ +SR + + + Sbjct: 826 --GYFETYPQVKAYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 878 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584 G A K + K + ++L L + + + Sbjct: 879 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQVV 936 >gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900] Length = 923 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+ E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + G + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T E+++N+ + + +P + Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT--DEFNASMLYHLM 651 E+V E DE + + +M Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899 >gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6] gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6] Length = 936 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 103/647 (15%), Positives = 183/647 (28%), Gaps = 158/647 (24%) Query: 46 DCVHDP-----VMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D MP ++LK LE+ + + N ++ +L PI + Sbjct: 393 DLFGGEGLAEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILHRYGADVAPIDDTML 452 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 + A GL + + K K L+ T + + N Sbjct: 453 -MSYALHAGL-HGHGMDTLSERYLDHKPIPIKPLLGSGKSAITFDRVPIAN--------- 501 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205 Y D +T +++ +P +EQ L + + G VD + Sbjct: 502 -AVPYAAEDADITLRLWQLFKPQLHQEQVTTVYETLERPLVPVLAQMERHGIKVDREVLS 560 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261 ++ + L+ E+ + G + ++L LF + L +T T Sbjct: 561 RMSNAFAQKMAGLESEIHEMA-GADFNVGSPKQLGEILFDKLELPGGKKGKTGAYATGAD 619 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 +L V + R S+ Sbjct: 620 ILEDLATEHALPGLVLDWRQL-------------------------------SKLKSTYT 648 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 R H Q ++DP+ I +R +A EG L Sbjct: 649 DALQDHINAETRRVHTSYAQTGASTGRMASTDPNLQNIPVRTEEGRRIREAFVAGEGNVL 708 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE R+LA MAG +AF G+D++ T + F+V A++T D R K + Sbjct: 709 LSLDYSQIELRILAHMAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKAIN 768 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y +A + +A++F + P Sbjct: 769 FGVIYGISGF---GLARNLRIPRK----------------EAQDFIDRYFQRFP------ 803 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 R+ E F QT+ K A P K Sbjct: 804 ------------GIRRYMDSTVEF--AKEHGFVQTLFGRKIHTAEINAKGPRAGFAK--- 846 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 R+ +N +Q + D++ M+ Sbjct: 847 --------------------RAAINAP------------------IQGTAADVIRRAMIR 868 Query: 617 ----ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658 ++L VHDE++ E P+ E ++ +M + A Sbjct: 869 MPGAIAHLPARMLLQVHDELLFEVPEAAVEETIAVAKEVMEGAANPA 915 >gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU] gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Acinetobacter baumannii ACICU] gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2] gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715] gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] Length = 923 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 VLAQIKPILENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+ E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + G + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T E+++N+ + + +P + Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT--DEFNASMLYHLM 651 E+V E DE + + +M Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899 >gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164] gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164] Length = 919 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 117/682 (17%), Positives = 207/682 (30%), Gaps = 167/682 (24%) Query: 9 ETRSPIDLTKCGI-CKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVL 57 ETR ID + + AE ++ F+ FD HD + + Sbjct: 344 ETRFAIDTETTSLDYRVAE---MVGFSVAFDAKDAYYVPLAHDYAGAPEQLNREQVLAQI 400 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEA 115 K LEN V + H+ ++ + N I + W +LA N + + A Sbjct: 401 KPILENDQVEKIGHHLKYDAHI---FANHGIELKGWFFDTMLASYVLNSVATRHGMDDVA 457 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 S +++ + K ++ + + Y D VT +++ L Sbjct: 458 RLYLSHLTTTFEQVAGKGAKQKSFNQI----------ELEVASPYAAEDAHVTYRLYEVL 507 Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L + E + + + + G +D L+ +L+Q+ Sbjct: 508 AEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFLDQLSIEFAKTMQELEQQAME 567 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + G + +++ LF + G+ T T T + +L + P A + +R Sbjct: 568 MA-GETFNIASPKQVGEVLFEKLGIKGGKKTTTGQFSTSESILEKIE--HPIAAVILEHR 624 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + Q+ R H Sbjct: 625 SLA-------------------------------KLKSTYTDALVKQSNNSTHRVHTSYH 653 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T +SDP+ I I +R IA G+ L+ AD + IE R++A + + Sbjct: 654 QALTATGRLSSSDPNLQNIPIRGEIGRQIRKAFIAPAGRVLLAADYSQIELRLMAHFSQD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G+D++ T A +A VT DQR K + L Y + T Sbjct: 714 DALLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFT 773 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++++++ + +P + Sbjct: 774 R-------------------QESQDYIKQYFHRYP------------------GIYEYMQ 796 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R +L L Q F T+ GR L D+ Sbjct: 797 RTRQL--ALEQGFVDTLF-------------------------------GRRLYTPDID- 822 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDE 631 N R+ L Q + DI+ M+ K ++L VHDE Sbjct: 823 ---ARNMMVRKAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQARLLLQVHDE 874 Query: 632 IVCETPDTDEFNAS-MLYHLMT 652 +V E + + L +M Sbjct: 875 LVFEVDENIADELAPQLAEVME 896 >gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511] gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511] Length = 904 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 124/673 (18%), Positives = 212/673 (31%), Gaps = 165/673 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQVLKEALENT-----DVT 67 D G+ ++ F+F F++ H V PQV EA + Sbjct: 339 DTETTGLD--TRSAKMVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEAAKKAIEKLMRHR 396 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 IV N F+ ++L + ++ PI T++LA S + A K +M+ K Sbjct: 397 IVGQNLKFDLSLLYSHLEME-PIEPEADTMILAWLLDPGSRVGLDILAQKFLGYQMKSFK 455 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--------- 178 E + KGE + A Y D TR+++ RL L Sbjct: 456 ETVK---KGEDFSSV----------ALEEAAFYAAEDAWATRQLYFRLTELFKKGGLEHL 502 Query: 179 ----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E + + G VD +L + + E +L QE+ +L G + + Sbjct: 503 LKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLA-GTEFNIK 561 Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF GL T+T + VL + P ++ R + + Sbjct: 562 STQQLGNVLFGTLGLKGGKKTKTGYSTNESVLRNLIGEHPIVEKILEYR-EHQKMLSTYV 620 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + L++ D P R H Q T + Sbjct: 621 DPLLKLAEKD----------------------------PE-GRIHTTFVQTGTATGRLAS 651 Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 DP+ I + VR +A EG +L D + IE R+LA +G+ +AFE GE Sbjct: 652 KDPNLQNIPVRSELGRRVRRAFVAQEGFRLASIDYSQIELRLLAHFSGDAALREAFEKGE 711 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D+++ T + F A +R K + L Y G+ +K+A G+ Sbjct: 712 DIHMATAIKLFGPEEAAA---KRNFAKSINFGLLYGMGS---RKLADELGITTKEA---- 761 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 K+ + + + L Q Sbjct: 762 ----------------------------------------KEIIEAYFAAFPTVRSYLEQ 781 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 +Q E G +RR V + + ++ R Sbjct: 782 IQQQAKEQGYVETLLRRRRV----FDYEGASGMMKAAILRE------------------- 818 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT- 639 + Q + D++ M++ ++L +HDE++ E P+ Sbjct: 819 ----------AVNTVFQGSAADLIKLAMLDIDTMIREEGLEARMLLQIHDELIFEIPEAQ 868 Query: 640 DEFNASMLYHLMT 652 E A+ H M Sbjct: 869 AEETAARFRHTME 881 >gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152] gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152] Length = 945 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 98/583 (16%), Positives = 193/583 (33%), Gaps = 83/583 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70 D G+ A +V +I AF ++ + + + + E+ + V Sbjct: 377 DTETTGLK--ALEVELIGIAFSYEIGKGYYVSFPENQEETKAILEEFRPFFESEMIEKVG 434 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 HN ++ VL N ++P+ + ++A P A + EL Sbjct: 435 HNLKYDIKVLS---NYNMPVKGKLFDTMIAHYLINPDMRHNMDVLAETYLNYHPVSITEL 491 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I + K L R P + EY D +T ++ + + Sbjct: 492 IGKKGK----NQLSMRVVPIKDQ-----TEYAVEDADITYQLKQHFTKELDSGNVTELFN 542 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VD L+ + + +L++E+ G + ++L Sbjct: 543 KVELPLVSVLTAMEIEGINVDTNFLKQLSTALTDDINRLEKEIYEQA-GEEFNIASPKQL 601 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF L T+T T + +LS K + R Sbjct: 602 GIVLFENMKLVDKPKKTKTGQYKTGEDILSFLAKEHKIIRDIQEYRQY------------ 649 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + P + + R H + Q + +++P Sbjct: 650 -------------------KKLQSTYVDALPNEINKKTGRIHTQYMQAVAATGRLSSNNP 690 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR + E L+ AD + IE R++A ++ E+ + AF+ GED+ Sbjct: 691 NLQNIPIRTERGREVRKAFVPKDENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDI 750 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T A+ F V VT++QR+ K + + Y A +++ T L+ L+ T Sbjct: 751 HASTAAKVFGVDINDVTREQRSNAKTVNFGIVYGVSAF---GLSNQTDLSRGEAKELIDT 807 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + + A E ++ T R ++ + +SR + + + + Sbjct: 808 YY------ETYPKLKAYMSAQVDFAREHGYVETVLNR-RRYLKDINSRNAMVRSGAERNA 860 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 G A K + + + ++L LV+ Sbjct: 861 VNAPIQGSAADIIKLAMINIHNRFIQEGFKSKMLLQVHDELVF 903 >gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058] gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] Length = 923 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+ E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + G + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T E+++N+ + + +P + Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT--DEFNASMLYHLM 651 E+V E DE + + +M Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899 >gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 934 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 113/693 (16%), Positives = 203/693 (29%), Gaps = 163/693 (23%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F PV+L D L L Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQL-DRTQALA---QLAPLLT 416 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V + + ++ V++ + + + +L + + Sbjct: 417 DPAVRKLGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 463 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179 M+ + + K E + P + + Y D +T + + L P Sbjct: 464 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLT 523 Query: 180 ----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G CVD A + + Q+ L G Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 582 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 583 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 630 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L++ G ++ P P+ R H Q Sbjct: 631 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 671 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 672 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 731 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE+G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 732 AFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAF---GLARQLGIGRG 788 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +A+++ +P + D T ++ R Sbjct: 789 ----------------EAQDYIALYFSRYP--GVRDFMETT-----RQQAR--------- 816 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +T+ +R + + + G R+ + Sbjct: 817 ----DKGYVETV-------FGRRLYLDFINAGSQG---------------QRAGAERAAI 850 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634 N Q + DI+ M+N ++L VHDE+V Sbjct: 851 NAPM------------------QGTAADIIKRAMVNVDGWIADHAQRAKMILQVHDELVF 892 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E D + S + M +PL + Sbjct: 893 EADVDFVDTLLSEVTTRMAGAAE--LRVPLVVD 923 >gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302] gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302] Length = 920 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 114/701 (16%), Positives = 207/701 (29%), Gaps = 170/701 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET S + D ++ F ++H +P +EAL Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYV------AIPNDREEAL 391 Query: 62 ----------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK 110 E+ + + N ++ VLK N + + + +LA P Sbjct: 392 QYVNIFKPVYEDPSILKIGQNLKYDYEVLK---NYGVTLGGKMFDTMLAHYVIQPELHHN 448 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169 A L K ELI +++ + R+ + EY D +T Sbjct: 449 MDYMAETLLHYKTIHIDELI----------GPRGKHQKSMRDLDPKDVYEYAAEDADITL 498 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ LEP + E L + + G +D H + I +L+ Sbjct: 499 QLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLE 558 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAI 274 Q++ G + +++ LF + + T+T T + VL S + P Sbjct: 559 QQIYEKA-GETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTNEEVLQSLRAKHPIVA 617 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + + G + P R Sbjct: 618 DIL-------------------------------DYRGLKKLLGTYVEALPKLINKRTGH 646 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q +T +SDP+ I +R C + + AD + IE R++ Sbjct: 647 IHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIM 706 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++G++ ++AF G D++ T A+ ++ A VT ++R K + Y Sbjct: 707 AHLSGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTY--- 763 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A ++ L+ E + R E E A + T R ++ Sbjct: 764 GLAQRMEIDNREARELI------EGYFATFPKVRAYMEQAKEEARRKGYAETLFGR-RRY 816 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 S+ + + G K + Sbjct: 817 LPDITSKNGTVRGFAERNAINAPIQGSEADIIKIAMI----------------------- 853 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R R ENI ++L VH Sbjct: 854 ---------------RIWQRFR------AENIR-------------------SKMILQVH 873 Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 DE+ PD E ++ M ++ +PL A+ G+ Sbjct: 874 DELNFSVYPDEKERVEKIVLEEMQG--AYQLQVPLIADAGW 912 >gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 933 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 99/568 (17%), Positives = 170/568 (29%), Gaps = 85/568 (14%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F PV+L D H L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTHALA---QLAPLLT 415 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V V + ++ V++ + + + +L + + Sbjct: 416 DPAVRKVGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 462 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 M+ + + K E + P + + Y D +T + L P + Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLA 522 Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G CVD A + + Q+ L G Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 582 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHELP------------ 629 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L++ G S+ P P+ R H Q Sbjct: 630 -------------------RVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 730 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 731 AFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL 548 +A G A KR V + Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVKV 868 >gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1] gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1] Length = 911 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 104/600 (17%), Positives = 181/600 (30%), Gaps = 79/600 (13%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDH-----PV-ELWDCVHDPVMPQV-----LKEALE 62 +D + ++ ++ + + PV D + +P+ LK LE Sbjct: 336 VDTETTDLHPHS--AELVGISIAWQPMVAYYIPVGHALDAAPEGQLPRADVLAALKPLLE 393 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + ++ N ++ + K I + +L L A L + Sbjct: 394 SPEIGKTGQNIKYDYQIFKRY---HITMQGIERDSMLYSYL-----LYGANRAHNLDAIA 445 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 E EL K E + + L Y D VT + + P +E Sbjct: 446 TE---ELGRTTIKFEDVAGKGRKRIRFDQVPLHLAAPYACEDAEVTWQAAASMAPNLDRE 502 Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + L + + G VD + T++ R +L +E+ L G V Sbjct: 503 PGLKRLYETIERPLIPVLAEMEYAGVLVDRDVLSTMSADFSKRRARLVEEIHELA-GEVF 561 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L LF + G+ T++ +S KL ++ Sbjct: 562 NVNSTQQLGHILFEKMGIKGGKRTKSGFSTDVSVLSKLADDGEKIPQQ------------ 609 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L + ++ P R H +Q +T + Sbjct: 610 ---------------VLAYRSLTKLQSTYTDALVALIHPYTGRVHTSYNQAVTLTGRLSS 654 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I +R+ IA G L+ AD + IE RVLA M +AF G Sbjct: 655 SDPNLQNIPIRTEEGRAIRTAFIAPAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGL 714 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A F V AQVT + R + K + L Y +A G+ N + Sbjct: 715 DIHAATAAELFGVPLAQVTGEHRRMAKTINFGLVYGMSPF---GLAKRLGIQNNEARAYM 771 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 A ++ + H + G C R ++ L + Sbjct: 772 DLYFAR--YDGVRQHMDATIRDARAHGFVETLGGRRCP-----IRDINATQRSLREFAER 824 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTR 585 G A K + L + ++L LV + + R Sbjct: 825 TAINAPLQGSASDLIKLAMIRLHGALQAGGFKARMVLQVHDELVLEVPDKELAAVKEVVR 884 >gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 997 Score = 265 bits (676), Expect = 3e-68, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 199/642 (30%), Gaps = 155/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 LK LE+ V +A N ++ ++ + + + T++++ G P Sbjct: 470 LKPLLEDRSVLKIAQNLKYDLVIMSRY---GVDVAPFDDTMLISYVLDAGTPHGHGMDAL 526 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A K + K++ + + H D VT ++ Sbjct: 527 AEKWLGHTPLQLKDVTGSGKSSVGFDQVDIDKATAH----------AAEDADVTLRLWLV 576 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P + E+ L + + RG VD + L+ + +L++E+ Sbjct: 577 LKPRLAAKGLVSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQ 636 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF GL T+T T ++L ++ + Sbjct: 637 LI-GERINIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDW 695 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ P P R H Sbjct: 696 RQL-------------------------------TKLKSTYTDALPGFIHPDTKRVHTSY 724 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T +SDP+ I +R+ I + +LV AD + IE RVLA +A Sbjct: 725 ALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFITDKSHRLVSADYSQIELRVLAHVAE 784 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF G D++ T + FNV + + R K + + Y A +A+ Sbjct: 785 IPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQ 841 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + +K ++ + R E +A E F+ T Sbjct: 842 LSIPREEAGNYIK------KYFERFPGIRDYIEETKAYAREHGFVET------------- 882 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 I +R P + PS R+ R Sbjct: 883 ------------------------IFGRRIHYPDIRSSN---------PSLRAFNERASI 909 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628 N R Q + DI+ M+ +A ++L V Sbjct: 910 NARL------------------------QGTAADIIRRAMIRMEEALERAGLSARMLLQV 945 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667 HDE++ ET + + E ++ H+M + P+ + +PL + Sbjct: 946 HDELIFETVEAEVEATIPVVRHVMENAAMPAVSMSVPLHVDA 987 >gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] Length = 937 Score = 265 bits (676), Expect = 3e-68, Method: Composition-based stats. Identities = 89/653 (13%), Positives = 175/653 (26%), Gaps = 156/653 (23%) Query: 46 DCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 D + Q LK LE+ + + N ++ + I + T++++ Sbjct: 400 DLADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFAR---RGIDVAPIDDTMLMSY 456 Query: 102 SNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + + K L+ R Y Sbjct: 457 AMHAGQHGHGMDTLSERYLNHTPIPIKPLL----------GTGKSAITFDRVPIDDAVAY 506 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T +++ +P + E+ L + + G VD ++ Sbjct: 507 AAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSNA 566 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ L G + ++L LF + G+ +T T +L Sbjct: 567 FAQKMAGLEAEIHELA-GQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDL 625 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 V + R S+ Sbjct: 626 ATEHALPGLVLDWRQL-------------------------------SKLKSTYTDALQD 654 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 R H Q + ++DP+ I +R + EG L+ D Sbjct: 655 HINAETGRVHTSYVQTGANTGRLASTDPNLQNIPIRSEEGRRIREAFVPEEGNVLLALDY 714 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA +AG +AF G+D++ T + FNV ++T D R K + + Y Sbjct: 715 SQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIY 774 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 +A + + Sbjct: 775 GISGF---GLARNLRIPRAEAQGFID---------------------------------- 797 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + R + + + E+G R+ + Sbjct: 798 ----------RYFERFPGIRRYMDETVAFAKEHGHVQTLFGRK---------------IH 832 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617 P + R R+ +N +Q + D++ M+ Sbjct: 833 TPEISAKGPRAGFAKRAAINAP------------------IQGTAADVIRRAMIRMPAAI 874 Query: 618 TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E P+ E +M + A + L + Sbjct: 875 AHLPARMLLQVHDELLFEVPEAAVEDTIETARQVMETAADPAVHLDVKLVVDA 927 >gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR] gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR] Length = 886 Score = 265 bits (676), Expect = 3e-68, Method: Composition-based stats. Identities = 95/595 (15%), Positives = 180/595 (30%), Gaps = 150/595 (25%) Query: 90 IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 R +LA PS L ++K Q++ G++ FC + R Sbjct: 409 PVRAGFDTMLAAYLLDPSVSNLDLAALSIKYLGQELSPGED-YRSFCAQAD---IILRLV 464 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 P E E D+ E L ++ + G +D + Sbjct: 465 PVLHEKLA---ELNMLDLYF------------DVEMPLLHILADMEFSGVKLDKEYLEAM 509 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLS 264 + + E ++ ++ L G + +L T LF + GL + T+T VL Sbjct: 510 SVDLSTEIDRITGDIYRLA-GEEFNINSTRQLGTILFEKLGLPVIKKTKTGYSTDVEVLE 568 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + + +V + R + Sbjct: 569 TLAERHEIVARVLHYRQL-------------------------------VKLKSTYVDGL 597 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVV 378 P P + H +Q +T +++P+ I +R + SE G ++ Sbjct: 598 IPLINPVTGKVHTTFNQTVTATGRLSSTEPNLQNIPIRMEEGRRIRKAFVPSEPGWIILS 657 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++G++ ++AF ED++ T A F V+ +VT + R+ K + Sbjct: 658 ADYSQIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAVNFG 717 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y +A ++ ++ Sbjct: 718 IVYGISDF---GLAKNISVSRKEARQYIE------------------------------- 743 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +R + + L + E G RR L Sbjct: 744 -------------NYFARYAGIKKYLEETVRLAREQGYVTTLLNRRRY-----------L 779 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 +L R++ R+ +NT +Q + DI+ M+ Sbjct: 780 PDILSPNRNIRSF---GERTAMNTP------------------IQGSAADIIKLAMVRVA 818 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + + + M + +PLK + Sbjct: 819 DCLKKEGLKARMLLQVHDELIFEAPPEELPKVTGIVRECMENTVK--LTVPLKVD 871 >gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922] gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922] Length = 941 Score = 265 bits (676), Expect = 3e-68, Method: Composition-based stats. Identities = 133/698 (19%), Positives = 222/698 (31%), Gaps = 165/698 (23%) Query: 1 MATL---FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVM 53 M TL D ET S L ++ +F ++ D + Sbjct: 366 MKTLDSFAFDTETTSLDPLE----------AKLVGISFSWEKGKGYYLPFPEDFDDAKNI 415 Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 E N + + HN ++ VL I I ++A P L Sbjct: 416 ILEFAELFSNPAIEKIGHNIKYDLKVLYKY---GIRIDGENFDTMIAHYLLNPDMRHNLD 472 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E K + LI + K + + EY D VT + Sbjct: 473 VLSET--YLGYKPVSIETLIGKKGKNQKN---------FREVDLIEQTEYGTEDSDVTFQ 521 Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + EP K E L + T+ G +DV L++ + +L+Q Sbjct: 522 LKNIFEPELEKVSLTKLFRNIEMPLMKVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQ 581 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 ++ S G + ++L LF + L LE ++ T S+ +++ Sbjct: 582 KIFSEA-GEEFNLNSPKQLGDILFDK--LKLEPKSKKTKTGQYSTGEEI----------- 627 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ A + ++ L + + P P R H Sbjct: 628 --LSKLAHYPI------------IKNILHYRQLQKLKSTYIDALPELVNPVTQRVHTTFA 673 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394 Q + + +P+ I +R IA K++ AD + IE R++A MA Sbjct: 674 QTVAATGRLSSVNPNLQNIPIRTEEGQQIRKAFIARNPEYKIISADYSQIELRLIAQMAQ 733 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +KAF+ GED++ +T A+ F VA +VT++QR+ K + + Y A +A Sbjct: 734 DPVMVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIYGVSAF---GLAQQ 790 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 TGL+ L+ E +P Sbjct: 791 TGLSNTEAKKLIDA----------------YYETYPT----------------------- 811 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 L + Q ENG +RR Y Sbjct: 812 -----LKKYIDQQIASARENGFVETLMRRRR------------------------YLKDI 842 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629 N+R+ NT R +Q + DI+ M+ K ++L VH Sbjct: 843 NSRN--NTVRSHAERN------AVNAPIQGSAADIVKLAMIQIQKELDKKFATKMLLQVH 894 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+V + P ++ E + M+ M S +PL AE Sbjct: 895 DELVFDAPISEVEEVSKMIKTTMESVIQ--MEVPLVAE 930 >gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 921 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 123/683 (18%), Positives = 214/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 ID ET + +D + AE ++ F+ FD H HD Sbjct: 348 HFAIDTET-TNLD------YRIAE---LVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREH 397 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 + + +K LEN V + H+ ++ + N I I W +LA +A Sbjct: 398 VLEQIKPILENEQVKKIGHHLKYDAHI---FANHGITIQGWYFDTMLASYVLNAAATRHG 454 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 455 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------ELEVAAHYAAEDAHVTYR 504 Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ L L + E + + + + G +D A L+ L+ Sbjct: 505 LYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQTLE 564 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + L G + +++ LF GL + T S+++ + + Sbjct: 565 NQATELA-GEAFNIASPKQVGEVLFDRLGL---KGGKKTATGQYSTSESILEKIEHPLAE 620 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 621 --------------------------VILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSY 654 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 655 HQALTATGRLSSTDPNLQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQ 714 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A + VT DQR K + L Y G F + Sbjct: 715 DDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY--GMSEF-GLTRQ 771 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G E++ ++ + +P + ER ++ R Sbjct: 772 LGFTR----------------EESRSYIARYFQRYP-------GVLDYMERTRQIAR--- 805 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 Q F +TI GR L D+ Sbjct: 806 ----------EQGFVETIL-------------------------------GRRLYTPDIL 824 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N N +Q L Q + DI+ M+ K ++L VHD Sbjct: 825 AN----NKMIKQAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQAKLLLQVHD 875 Query: 631 EIVCETPD--TDEFNASMLYHLM 651 E+V E + TDE + + +M Sbjct: 876 ELVFEADETITDELS-KQIAEVM 897 >gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 933 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 99/568 (17%), Positives = 170/568 (29%), Gaps = 85/568 (14%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F PV+L D H L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTHALA---QLAPLLT 415 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V V + ++ V++ + + + +L + + Sbjct: 416 DPAVRKVGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 462 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 M+ + + K E + P + + Y D +T + L P + Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLA 522 Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G CVD A + + Q+ L G Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 582 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHELP------------ 629 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L++ G S+ P P+ R H Q Sbjct: 630 -------------------RVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 730 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 731 AFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL 548 +A G A KR V + Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVKV 868 >gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus parainfluenzae T3T1] Length = 932 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 88/531 (16%), Positives = 167/531 (31%), Gaps = 68/531 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEA 115 LK LEN + V N ++ T+ I + +L + A Sbjct: 411 LKPILENPTIQKVGQNFKYDLTIFAR---NGIDVQGVAFDTMLESYVLNSTGRHNMDDLA 467 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +E+ + T + + + ++++L Sbjct: 468 KRYLGHQTISFEEIAGKGKNQLTFNQIQLEQAAEYAAEDADVTMKLQQ------VLWEKL 521 Query: 176 EPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E L + + RG +D + + ++L+++ L G Sbjct: 522 SKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSELEEQAYVLA-G 580 Query: 229 LVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L+ LF + GL + +T + VL + +R Sbjct: 581 QPFNLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHELPKVLVEHR---- 636 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 G S+ P P+ R H Q +T Sbjct: 637 ---------------------------GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVT 669 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R IA EG +V AD + IE R++A ++ +Q + Sbjct: 670 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLI 729 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ +T A F VA +VT +QR K + L Y A GL+ Sbjct: 730 NAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAF---------GLSR 780 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 S + + + + E A ++ T R + +S Sbjct: 781 QLSIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGR-RLYLPDINSSNGM 839 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + G A KR + L ++ ++ +++ LV+ Sbjct: 840 RRKAAERVAINAPMQGTAADIIKRAMIQLDQKLQNDPDIAMIMQVHDELVF 890 >gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183] gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183] Length = 870 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 111/605 (18%), Positives = 193/605 (31%), Gaps = 142/605 (23%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + +LK+ D+T +N R A N I I L LA Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLK--RDC-HALLNAGIVIREISYDLALAEH------ 398 Query: 109 LKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L G + S + G E RF K + L P E + FGE+ + Sbjct: 399 LTNGGGKISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQY--FGEFVAYLPII 456 Query: 168 TREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 I + + LS E L + ++ G +DV L + + E L +E Sbjct: 457 KDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEE 516 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + L+ G + + ++L L+ E GL D ++T VL + + P ++ Sbjct: 517 IYDLSGG-PFNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLA--- 572 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 F + P Q R H DQ Sbjct: 573 ----------------------------FRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQ 604 Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 DP+ I +R SE + AD + IE R LA ++ + Sbjct: 605 TGAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQD 664 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+GED++ T ++ F+V QV+K+QR K + + Y A +A Sbjct: 665 KSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAF---GLAKVL 721 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +++ L++ + + +F + A +DL + T R Sbjct: 722 KISIGEAQELIQA--YFSRYPEIAHFVEETI----QQAAKDLRVTTMLGR---------E 766 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R+ + WNE P R+ Sbjct: 767 RIIDSWNEF--------------------------------------PGSRAAS------ 782 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 R +NT + + +++ M++ ++A ++L +H Sbjct: 783 GRFAVNTRIQ------------------GSAAELIKLAMLDISQAIKQQQMKSRMLLQIH 824 Query: 630 DEIVC 634 DE++ Sbjct: 825 DELLF 829 >gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] Length = 1012 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 106/631 (16%), Positives = 190/631 (30%), Gaps = 130/631 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + L+ LE+ V + N F +L L + H + + A G A Sbjct: 484 EALRPLLESPGVLKIGFNIKFTAVLLAQH-GLTLQNHDDVQLMSYALDAGR-HAHGLDAL 541 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A K E+I + A Y D V +++ Sbjct: 542 AENWLGHKALSYGEVI----------GSGKAKLGFDQVAIDRATCYAAEDADVALRLWRI 591 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P + E+ L + + RG +D + L+ +++ E+ Sbjct: 592 LKPRLTAERMMTVYETLERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIRE 651 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + G + ++L LF + GL T+T +S + F Sbjct: 652 IA-GEELNIGSPKQLGDVLFGKMGLPGGKKTKTGAWSTSASILDELAEEGHQFP------ 704 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R L + S+ P P+ R H T Sbjct: 705 --------------------RKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAAT 744 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I +R IA+ G KLV AD + IE R+L+ +A Sbjct: 745 TTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALR 804 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ G D++ T + F V + + R K + + Y A +A+ G+ Sbjct: 805 TAFQDGIDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAF---GLANQLGIPR 861 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +K E + ++ +E H + Sbjct: 862 EEAGAYIK--KYFERFPGIRDYMDATKEFCRAHGYVE----------------------- 896 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + ++ P + PS R+ R N R Sbjct: 897 ------------------TLFGRKCHYPDIKASN---------PSIRAFNERAAINARL- 928 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 G + I +A+ R E + A + ++L VHDE++ E PD Sbjct: 929 --------------QGTAADIIRRAMVR---MEDALAAKQLSAQMLLQVHDELIFEVPDD 971 Query: 640 D-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 + ++ +M P A +PL+ + Sbjct: 972 EVAATLPVVQQVMQDAPFPAVLLSVPLQVDA 1002 >gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] Length = 920 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 99/600 (16%), Positives = 187/600 (31%), Gaps = 90/600 (15%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEA 60 +D ET + D A ++ +F +++ D + + K Sbjct: 351 SLDTET-TSTD---------AISAELVGLSFSVEENRAFYVAIPADRQEATRIVGIFKPL 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119 EN + + N ++ VL + + + ++A P A L Sbjct: 401 YENEQILKIGQNIKYDYEVLSHY---GVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLL 457 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + +EL+ + RN + EY D +T + LEP Sbjct: 458 GYRTIHIEELLG-------PKGKKQRNMRDLSP--TDIYEYAAEDADITLRLKHVLEPHL 508 Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + + G C+D ++I + +QE+ G Sbjct: 509 KELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEA-GE 567 Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + + T+T T + VL S + P Sbjct: 568 TFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVV----------- 616 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R L + G + P PR H +Q T Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQT 656 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R C I +G AD + IE R++A ++G++ + Sbjct: 657 STGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMM 716 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A+ ++ +VT QR K + Y +A G+ Sbjct: 717 EAFREGHDIHRATAAKIWHEDIEKVTDAQRKKAKQANFGIIYGITTY---GLAQRMGIPN 773 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + L++ ++ + E E A + T R ++ +SR + Sbjct: 774 SEARELIQ------DYFHTFPKVKAYMEQAKETARAKGYAETLFHR-RRYLPDINSRNAT 826 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRS 578 + + G K V + K++ ++L L + R Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886 >gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193] gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193] Length = 935 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 98/651 (15%), Positives = 176/651 (27%), Gaps = 160/651 (24%) Query: 46 DCVHDP-----VMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D MP ++LK LE+ V + N ++ +L I + Sbjct: 392 DLFGGEGLAEGQMPLEQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY---GIDVAPIDD 448 Query: 96 TLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 T++++ + + + K K L+ R Sbjct: 449 TMLMSYALHAGEHNHGMDILSERYLDHKPIPIKPLL----------GTGKSAITFDRVPI 498 Query: 155 RLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALA 204 Y D +T +++ +P + E+ L + + G VD Sbjct: 499 ADAVPYAAEDADITLRLWQHFKPELHQRQVTVVYETLERPLVPVLAEMERNGIKVDRDTL 558 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQ 260 ++ + L+ E+ +L G + ++L LF + L +T T Sbjct: 559 SRMSNAFAQKMAALEDEIHALA-GQPFNVGSPKQLGEILFDKLELPGGKKGKTGAYATGA 617 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 +L V + R S+ Sbjct: 618 DILEDLATEHALPALVLDWRQL-------------------------------SKLKSTY 646 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375 P R H Q + +SDP+ I +R + +G Sbjct: 647 TDALQDHINPDTGRVHTSYIQTGANTGRMASSDPNLQNIPVRSEEGRRIREAFVPEQGNV 706 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D + IE R+LA +AG AF G+D++ T + F+V ++T D R K + Sbjct: 707 LLSLDYSQIELRILAHVAGIDALKAAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAI 766 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y + +A+ F E P Sbjct: 767 NFGVIYGISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP----- 802 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 R R E + QT+ K Sbjct: 803 -------------GIRAYMDRTVEF--AKEHGYVQTLFGRK------------------- 828 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM- 614 + P + R R+ +N +Q + D++ M Sbjct: 829 ----IHTPEIAAKGPRAGFAKRAAINAP------------------IQGTAADVIRRAMV 866 Query: 615 ---MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL 661 ++L VHDE++ E P+ E +M + A L Sbjct: 867 KMPPAIAHLPARMLLQVHDELLFEVPEAAVEETIETARRVMENAADPALHL 917 >gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237] gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237] Length = 945 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 92/597 (15%), Positives = 200/597 (33%), Gaps = 81/597 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVA 70 D G+ ++ AF ++ D + + L+ E+ + + Sbjct: 377 DTETTGLNP--LTAELVGIAFSWEASKGFYIPFPADKTEAQEIIEQLRPFFEDEAIEKIG 434 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N ++ VL ++ + +LA P L+ + I Sbjct: 435 QNLKYDIKVLDKY---NVKVKGKCFDTMLAHYLINP---DMRHNMEVLAETYLNYTPVSI 488 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LSS 180 + L R+ P + EY D +T ++ ++ +P + Sbjct: 489 TELIGKKGKNQLNMRDVPLPNQ-----TEYAAEDADITYQLAQQFKPELEEAKTQELFTD 543 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + G +D ++L + +D + KL+ ++ G + ++L Sbjct: 544 IEIPLLHVLADMELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEA-GEEFNIASPKQLG 602 Query: 241 TWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF + L T+T T + VLS K V + R Sbjct: 603 DILFDKLALVKKPKKTKTGQYSTAEDVLSYLAKDHKIIENVLSYR--------------- 647 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 G ++ P Q R H + Q + +++P+ Sbjct: 648 ----------------GLAKLKSTYVDALPAQVEESTGRVHTDYMQTVAATGRLSSNNPN 691 Query: 356 PLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I VR + + LV AD + IE R++A ++ E ++AF+ GED++ Sbjct: 692 LQNIPIRTERGRQVRKAFVPRNKEYVLVAADYSQIELRIIAALSEETTMIEAFKNGEDIH 751 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 +T ++ FNV +VT++QR+ K + + Y A +++ T L+ L+ T Sbjct: 752 ASTASKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRAEAKELIDTY 808 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + +++ + + ++ +G ++ + + + + + Sbjct: 809 Y--KTYPKLKSYMGGLVDFARDNGYVQTVLGR-----RRYLKDINGSNAIVRGAAERNAV 861 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTTR 585 G A K + + ++ ++L LV+ + T + Sbjct: 862 NAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVFDVYKPELEEMKTLIK 918 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 22/149 (14%) Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 +A E K K LV +D + +L R L + + N R Sbjct: 800 EAKELIDTYYKTYPKLKSYMGGLVDFARDNGYVQTVLGRRRYL------KDINGSNAIVR 853 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCET--P 637 +Q + DI+ M+N K + ++L VHDE+V + P Sbjct: 854 GAAERNA-----VNAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVFDVYKP 908 Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + +E +++ M + ++ +PL E Sbjct: 909 ELEEMK-TLIKSEMEN--AYKLEVPLDVE 934 >gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 976 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 109/694 (15%), Positives = 199/694 (28%), Gaps = 168/694 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMPQ---- 55 +D ET S + D ++ + + L Q Sbjct: 384 SLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLSIE 433 Query: 56 ----VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 L+ +E+ NS F+R + FN + + +LA Sbjct: 434 DVFSKLRNWIEDPRKEKALQNSKFDRQI---FFNHGLDLKGVTFDTLLADYLLN------ 484 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E + F K + + +NK YC DV +T +I Sbjct: 485 -----NQEKHGLSEISFRLFGF-KPPSFKETVGKNKDFSFVDIGEASIYCGYDVFLTFKI 538 Query: 172 FKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 K + E L + + G +D+ L++ + ++ Sbjct: 539 VKIFKERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIE 598 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274 ++ L + ++L LF + L + +T T VL Sbjct: 599 SKVYELA-EENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQ 657 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ P + R Sbjct: 658 HLIKHR-------------------------------TLSKLLSTYIDALPNLINEKTGR 686 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q T +S+P+ I S +R + + KL+ AD + IE R+L Sbjct: 687 VHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F Q++ ++R +GK + + Y G + Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSEERRVGKTINFGVIYGMG---IK 801 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 K A +TG++ + E + F E A+ ++ T R ++ Sbjct: 802 KFARSTGVSTPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE- 854 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 K DKN L ++ Sbjct: 855 -----------------------------------------FKFDKNGLGRLIGKDPY-- 871 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG----- 621 + R L +Q S DI+ M+ K Sbjct: 872 -----------EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNV 920 Query: 622 -YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTS 653 ++L VHDE++ E D+ E ++ M Sbjct: 921 PAKMLLQVHDELLFEVEQDSLEITTKLVKKTMED 954 >gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16] gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16] Length = 938 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 104/634 (16%), Positives = 184/634 (29%), Gaps = 154/634 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 LE+ + N ++ V + + T++ + A +L S Sbjct: 420 LEDASRPKLGQNLKYDVHVFANH-GVKLR-GVAHDTMLQSYVLASHRNHGMDSLAERLLS 477 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 K +E+ C + +D + EY D VT + +++ P Sbjct: 478 LKTITYEEV----CGKGASQIGFD------QIDLARATEYAAEDADVTLRLHRKMFPQVE 527 Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + + Q + G +D + + L+Q G Sbjct: 528 AAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRMLALEQAAYE-AAGQ 586 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +++ LF + L + T +T + VL + P + Sbjct: 587 PFNLGSPKQIGEILFSQMKLPVVKKTASGAPSTDEEVLQKLAEDYPLPKLLL-------- 638 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + G ++ P P+ R H Q Sbjct: 639 -----------------------DYRGLAKLKSTYTDKLPKMVNPQTGRVHTSYGQATAV 675 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R IA G +V AD + IE R++A ++G++ L+ Sbjct: 676 TGRLASTEPNLQNIPVRTEEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLR 735 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF GED++ T F V V+ +QR KV+ L Y A +A G+ Sbjct: 736 AFANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAF---GLAGNLGIERE 792 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 K + R + Sbjct: 793 AA--------------------------------------------KHYIDRYFMRYPGV 808 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSY 579 + + + + E G RR L LP R R+ Sbjct: 809 AHYMEETRQTAREQGYVETVFGRR---------------LWLPDINGGSGPRRQAAERAA 853 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDI--VLTVHDEIV 633 +N Q + D++ M+ + G ++ VHDE+V Sbjct: 854 INAPM------------------QGTAADLIKLSMIAVQGWLERDGLQTRQIMQVHDELV 895 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P+ + E L LM S +PL AE Sbjct: 896 LEVPEHELELVKVRLPELMCSVAQ--LRVPLVAE 927 >gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] Length = 940 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 92/543 (16%), Positives = 181/543 (33%), Gaps = 67/543 (12%) Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKL 118 AL+N + N F+ V++ I I + ++A P A Sbjct: 419 ALQNPKSFKIGQNIKFDILVVRKY---GIRIAGPLFDTMIAHYLLNPELRHGMDYLAETY 475 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K +ELI + + L R+ P EY D +T ++ P Sbjct: 476 LKYKTVRIEELIG----PKGRKQLCMRDVPIP-----QVAEYAAEDADITLKLKNYFAPC 526 Query: 179 SSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 KE L Y+ + G +D ++ + KL++E+ L G Sbjct: 527 LDKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIYELA-G 585 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + + ++ LF L +E+ + T S+++++ + MR+ V Sbjct: 586 IKFNINSARQVGEVLFDH--LKIEEKAKKTKTGSYSTSEEILEK--------MRSKHPVV 635 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 KL L++ G + P P + H +Q +T Sbjct: 636 EKL----------------LEYRGLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGR 679 Query: 349 SITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +++P+ I + +R A E AD + IE R++A ++ + ++AF Sbjct: 680 LSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIEAF 739 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +G D++ T A+ + + +VT D R K + Y +A + Sbjct: 740 RSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLNIPRAES 796 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L++ + + D R + E A E ++ T +R K+ +S + + Sbjct: 797 KELIE--GYFKTYPD----IRAYMDESIEVAKEKGYVETIYKR-KRFLPDINSHNAIVRG 849 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLN 581 + G A K V + + + ++L L + + + Sbjct: 850 YAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDEMEKVK 909 Query: 582 TTT 584 Sbjct: 910 QIV 912 >gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] Length = 920 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 101/600 (16%), Positives = 191/600 (31%), Gaps = 90/600 (15%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60 ID ET + D A ++ +F ++ + + Q+ K Sbjct: 351 SIDTET-TSTD---------AISAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPL 400 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119 E+ + + N ++ VL + + + ++A P A L Sbjct: 401 YESDKIMKIGQNIKYDYEVLTRY---GVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLL 457 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + +EL+ KG+ + + D + + EY D +T + LEP Sbjct: 458 GYQTIHIEELLGP--KGKKQKNMRDLSPTD-------IYEYAAEDADITLRLKNVLEPRL 508 Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E L + + G C+D ++I + +QE+ G Sbjct: 509 KELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEA-GE 567 Query: 230 VSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + + T+T T + VL S + +P Sbjct: 568 EFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIV----------- 616 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R L + G + P PR H +Q +T Sbjct: 617 --------------------RNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALT 656 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R C I +G AD + IE R++A ++ ++ + Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMM 716 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ T A+ ++V +VT QR K + Y +A + Sbjct: 717 EAFREGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTY---GLAQRMDIPN 773 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 L+ E + + E+ E A + T R ++ +SR + Sbjct: 774 GEAKELI------EGYFRTFPKVQVYMEHAKEVARAKGYAETLFHR-RRYLADINSRNAT 826 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + G K V + KK+ ++L L + R Sbjct: 827 VRGFAERNAINAPIQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEERE 886 >gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 952 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 105/634 (16%), Positives = 199/634 (31%), Gaps = 146/634 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115 LK L N ++ + N ++ T+ N I + T++ + + A Sbjct: 430 LKPILLNPEIKKIGQNIKYDLTI---FANYGIELQGVAFDTMIESYTQNSTGRHNMDDLA 486 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K +EL + T + + EY D VT ++ + L Sbjct: 487 ARYLGHKTIPFEELAGKGKNQLTFDKI----------EIAKAAEYAAEDADVTMKLHQVL 536 Query: 176 EPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +E EL L I G +D T + ++ +++ + + Sbjct: 537 WEKLQQEPELVKLFDEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHA 596 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L+ LF + GL + T Q + + Sbjct: 597 EA-GQTFNLASTKQLQEILFEKLGLPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEH 655 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R G S+ P + R H +Q +T Sbjct: 656 R--------------------------GLSKLKSTYTDKLPQLINKKTGRVHTSYNQAVT 689 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A EG K+V AD + IE R++A ++ ++ + Sbjct: 690 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMI 749 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F V +VT +QR K + L Y + +++ G+ Sbjct: 750 NAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIGR 806 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +A+ + + +P A ++ R+ Sbjct: 807 ----------------AEAQKYMDLYFQRYP-----------AVQQFMTDIREV------ 833 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + +T+ GR L D+ + Sbjct: 834 ---AVEKGYVETLF-------------------------------GRRLYLPDIKSG--- 856 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVC 634 N R+ +Q + DI+ M+ A +++ VHDE+V Sbjct: 857 -NAILRKAAERVA-----INAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVF 910 Query: 635 ET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E D ++ ++ M S +PL AE Sbjct: 911 EVKADKIDHYSQ-LIKTEMEKAIS--LKVPLIAE 941 >gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 952 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 105/634 (16%), Positives = 199/634 (31%), Gaps = 146/634 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115 LK L N ++ + N ++ T+ N I + T++ + + A Sbjct: 430 LKPILLNPEIKKIGQNIKYDLTI---FANYGIELQGVAFDTMIESYTQNSTGRHNMDDLA 486 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K +EL + T + + EY D VT ++ + L Sbjct: 487 ARYLGHKTIPFEELAGKGKNQLTFDKI----------EIAKAAEYAAEDADVTMKLHQVL 536 Query: 176 EPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +E EL L I G +D T + ++ +++ + + Sbjct: 537 WEKLQQEPELVKLFDEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHA 596 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L+ LF + GL + T Q + + Sbjct: 597 EA-GQTFNLASTKQLQEILFEKLGLPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEH 655 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R G S+ P + R H +Q +T Sbjct: 656 R--------------------------GLSKLKSTYTDKLPQLINKKTGRVHTSYNQAVT 689 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A EG K+V AD + IE R++A ++ ++ + Sbjct: 690 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMI 749 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F V +VT +QR K + L Y + +++ G+ Sbjct: 750 NAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIGR 806 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +A+ + + +P A ++ R+ Sbjct: 807 ----------------AEAQKYMDLYFQRYP-----------AVQQFMTDIREV------ 833 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + +T+ GR L D+ + Sbjct: 834 ---AVEKGYVETLF-------------------------------GRRLYLPDIKSG--- 856 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVC 634 N R+ +Q + DI+ M+ A +++ VHDE+V Sbjct: 857 -NAILRKAAERVA-----INAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVF 910 Query: 635 ET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E D ++ ++ M S +PL AE Sbjct: 911 EVKADKIDHYSQ-LIKTEMEKAIS--LKVPLIAE 941 >gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 934 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 116/697 (16%), Positives = 205/697 (29%), Gaps = 171/697 (24%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F PV+L D L L Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQL-DRTQALA---QLAPLLT 416 Query: 63 NTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + V + + ++ V++ + D + ++ AR + A + +G Sbjct: 417 DPAVRKLGQHGKYDLHVMRRHGVELAGYAEDTLLESFVLNSGSARHDMDSLAKRYLGYDT 476 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +G + I P + + Y D +T + + L Sbjct: 477 VKYEDVCGKGAKQI-----------------PFAQISLEDATRYAAEDADITLRLHRVLG 519 Query: 177 PLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P E L + I G CVD A + + Q+ L Sbjct: 520 PRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATEL 579 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF E L +T + L + Sbjct: 580 A-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP-------- 630 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R L++ G ++ P P+ R H Q Sbjct: 631 -----------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQ 667 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ Sbjct: 668 AGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDP 727 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AFE+G D++ T A F V+ D+R K + L Y A +A G Sbjct: 728 GLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAF---GLARQLG 784 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + +A+++ +P + D T ++ R Sbjct: 785 IGRG----------------EAQDYIALYFSRYP--GVRDFMETT-----RQQAR----- 816 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + +T+ +R + + + G Sbjct: 817 --------DKGYVETV-------FGRRLYLDFINAGSQG---------------QRAGAE 846 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630 R+ +N Q + DI+ M+N ++L VHD Sbjct: 847 RAAINAPM------------------QGTAADIIKRAMVNVDGWIADHAQRAKMILQVHD 888 Query: 631 EIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E D + S + M +PL + Sbjct: 889 ELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVD 923 >gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108] gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108] Length = 952 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 109/695 (15%), Positives = 209/695 (30%), Gaps = 172/695 (24%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------VMPQVLKEALENTDV 66 ID G E + L F D + + P + L+ EN Sbjct: 383 SIDTETTGT----EPMEAELVGMSFSDAENQAYYVPVPPIREEALKIVNELRPLYENEKS 438 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKLSSQK 122 V N ++ VL+ N +I + + +LA P + + E L + Sbjct: 439 LKVGQNIKYDMIVLQ---NYEIQVKGPLFDTMLAHYVLQPELRHNMDYLAEIYLHYQTIH 495 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 ++E R+ E Y D VT ++ LE Sbjct: 496 IDE-------LIGPRGKNQKNMRDL--SPEE---VYRYACEDADVTLKLKNILEKELKEQ 543 Query: 178 -----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + I G +D ++ + ++++E+ +L + Sbjct: 544 GGEHLFHEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTIRLQEIEKEIYALAD-ETFN 602 Query: 233 SRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 +++ LF + + T+T T + VL S + ++ Sbjct: 603 IASPKQVGEILFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHGIIGKILE--------- 653 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + G + P PR H +Q +T Sbjct: 654 ----------------------YRGLKKLLSTYIDSLPQLINPRTGHIHTSFNQAVTATG 691 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R I +G + AD + IE R++A ++ ++ + AF Sbjct: 692 RLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRNMIDAF 751 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +G D++ T A+ + + VT D R K + Y +A ++ Sbjct: 752 RSGYDIHAATAAKIYKTDISDVTADMRRKAKTANFGIIYGISVF---GLAERMNVSRQEA 808 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L+ E +P+ K + + R++ Sbjct: 809 KELIDG----------------YFETYPQ---------------VKEYMDRSIRIAR--- 834 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLN 581 + +TI + K LP S G R+ +N Sbjct: 835 --ENGYVETIFHRK-----------------------RFLPDINSRNAVVRGYAERNAIN 869 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCE 635 +Q + DI+ M + + ++L VHDE+ Sbjct: 870 AP------------------IQGSAADIIKVAMAHIHRRFVSNNLKAKMILQVHDELNFS 911 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 P ++ E ++ M +++ +PLKA+ G+ Sbjct: 912 VPASEKEIVQKIVIEEMEH--AYSMHVPLKADCGW 944 >gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] Length = 926 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 99/592 (16%), Positives = 177/592 (29%), Gaps = 88/592 (14%) Query: 7 DFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F P +L D L L Sbjct: 353 DTETDSLDPLQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQALA---QLAPLLT 408 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + + + ++ V++ + + + +L + + Sbjct: 409 DPALRKLGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 455 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179 M+ + + K E + + + Y D +T + + L P Sbjct: 456 MDSLAKRYLGYDTVKYEDVCGKGAKQIKFAQVSLEDATRYAAEDADITLRLHQVLGPKLS 515 Query: 180 ----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G CVD A + + Q+ L G Sbjct: 516 AEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 574 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 575 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 622 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L++ G ++ P P+ R H Q Sbjct: 623 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 663 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 664 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVS 723 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE+G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 724 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 780 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 781 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 833 Query: 521 WNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +A G A II R V + + L++ L LV+ Sbjct: 834 RAGAERAAINAPMQGTAADIIKRAMVSVDGWIAEHAQRALMI-LQVHDELVF 884 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 93/582 (15%), Positives = 181/582 (31%), Gaps = 81/582 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMP--QVLKEALENTDVTIVA 70 D G A ++ +F D + P K EN + + Sbjct: 368 DTETTGTD--ANQCELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEFKPIFENPAIGKIG 425 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKEL 129 N F+ VLK ++ + + +LA P A L Sbjct: 426 QNIKFDMLVLK---YYNVTMQGELFDTMLAHYIIDPDTRHNMDILAENYLGYSPVSITTL 482 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I KG+ + D +Y D VT ++ + EP + Sbjct: 483 IG--AKGKGQGTMRD-------VEIEKIKDYAAEDADVTLQLKEVFEPKLQQVGGTKLAT 533 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L Y+ I G +D ++ ++ + +KL++ + G+ + ++L Sbjct: 534 DIENPLIYVLADIEFEGVRIDHDTLKEFSKDLETDISKLEKTVYEKA-GVKFNIASPKQL 592 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM- 298 LF + L +A ++ + T + + Sbjct: 593 GEVLFEKLNLDA------------------------------KAKKTKTGQYQTGEDVLL 622 Query: 299 ---NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 N +R L F + P P+ R H +Q + +++P+ Sbjct: 623 ALANKSDIVRDILDFRQLQKLKSTYVDALPLMVNPKTGRVHTSYNQAVAATGRLSSNNPN 682 Query: 356 PLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I VR I + +V AD + IE R++A ++ + + AF G D++ Sbjct: 683 LQNIPIRTERGREVRKAFIPRNDDHVIVSADYSQIELRIIAEISKDANMMDAFIQGIDIH 742 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A+ + +V R K + + Y A + + A ++ Sbjct: 743 TATAAKVYGKTLDEVDGTMRRNAKAVNFGIIYGQSAFGLSQ---NLNIPRKEAADIIDQY 799 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A ++ +N+ E+ F+ T R ++ R +S + + + Sbjct: 800 FA--QYPGIKNYMSDTMNFARENG----FVQTLMGR-RRYLRDINSANATVRGYAERNAI 852 Query: 530 QTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVY 570 G A K + + KK K + + + LV+ Sbjct: 853 NAPIQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDELVF 894 >gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 879 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 306 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 355 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 356 VLAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 412 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 413 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 462 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+ E L+ ++ + + G +D A L+ L+ Sbjct: 463 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 522 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + G + +++ LF + G+ + T S+++ + + Sbjct: 523 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 578 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 579 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 612 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 613 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 672 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 673 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 732 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T E+++N+ + + +P + Sbjct: 733 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 755 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 756 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 782 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 783 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 833 Query: 631 EIVCETPDT--DEFNASMLYHLM 651 E+V E DE + + +M Sbjct: 834 ELVFEVDSNIADELS-KQIADVM 855 >gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D] gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D] Length = 937 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 110/634 (17%), Positives = 189/634 (29%), Gaps = 154/634 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ V + ++ V N DI + T++ + A ++ Sbjct: 419 LEDESRKKVGQHLKYDAHV---FANHDIALRGIEHDTMLESYVLESHRNHGMDALAERVL 475 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K + + C + +D Y D VT + + L P Sbjct: 476 HLKTITYEAV----CGKGASQIGFD------EVPLDRATAYAAEDADVTLRLHRTLFPKV 525 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + Q + G +D + + + +L+ E L G Sbjct: 526 AEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDADRLAKQSNELGLRLIELEAEAHKLA-G 584 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ F + L + T +T + VL + P + Sbjct: 585 QPFNLGSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAEDYPLPKLLL------- 637 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + G ++ P PR R H Q Sbjct: 638 ------------------------DYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATA 673 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R IA EG +V AD + IE R++A ++ ++ + Sbjct: 674 VTGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLM 733 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T A FNV P +VT DQR + KV+ L Y A +AS G+ Sbjct: 734 RAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAF---GLASNLGIGR 790 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + +R Sbjct: 791 --------------------------------------------DAAKLYIDRYFARYPG 806 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 N + + + E+G RR L LP + + Sbjct: 807 AANYMEETRQSAREHGYVETVFGRR---------------LWLP------------DING 839 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 N RQ +Q + D++ M+ +V+ VHDE+V Sbjct: 840 GNGPRRQAAERAA-----INAPMQGTAADLIKLSMLAVQGWLEAEAMRSRLVMQVHDELV 894 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + L LM S + +PL AE Sbjct: 895 LEVPQDELAVVRERLPELMCSVAT--LRVPLVAE 926 >gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4] gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4] Length = 992 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 111/643 (17%), Positives = 199/643 (30%), Gaps = 156/643 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115 LK LE+ V VA N ++ V+K I I + T++L+ A + Sbjct: 464 LKGLLEDASVLKVAQNLKYDYLVMKRH---GIVIRGFDDTMLLSYVLEAGVGAHGMDSLS 520 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + KE+ T + + Y D VT ++ L Sbjct: 521 ERWLGHTPIPYKEVAGSGKSLVTFDLV----------DIDKATAYAAEDADVTLRLWLVL 570 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ L + + +RG +D + L+ + + + E+ L Sbjct: 571 KPRLAAVGLARVYERLERPLVPVLADMEERGITIDRQILSRLSGELAQKAAAFEDEIYEL 630 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280 G + ++L LF L T+T T +VL P ++ + R Sbjct: 631 A-GERFNVGSPKQLGDILFGRMNLPGGSKTKTGQWSTSAQVLEDLAAQGEPLPRKIVDWR 689 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ P P+ R H Sbjct: 690 QL-------------------------------TKLKSTYTDALPGYVHPQTKRVHTSYS 718 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T +S+P+ I +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 719 MAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADI 778 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G D++ T + F V + + R K + + Y A +A+ Sbjct: 779 PQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINFGIIYGISAF---GLANQL 835 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + +K E + +++ + EH + G R+ H Sbjct: 836 SIERAEAGEYIK--KYFERFPGIKDYMESTKAFVREHGYVETIFG----------RRAH- 882 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 Y + +N PS R+ N Sbjct: 883 ----------------------------------YPEIKSSN-----PSMRAF------N 897 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--------DIVLT 627 R+ +N +Q + D++ M+ A ++L Sbjct: 898 ERAAINAP------------------IQGSAADVIRRAMVQVEPALAKAGLGEKTRMLLQ 939 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667 VHDE++ E D E ++ M + P+ A +PLK + Sbjct: 940 VHDELIFEVEDEAIEAALPVIVSTMENAAMPAIAMRVPLKVDA 982 >gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] Length = 952 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 105/634 (16%), Positives = 199/634 (31%), Gaps = 146/634 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAVGEA 115 LK L N ++ + N ++ T+ N I + T++ + + A Sbjct: 430 LKPILLNPEIKKIGQNIKYDLTI---FANYGIELQGVAFDTMIESYTQNSTGRHNMDDLA 486 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K +EL + T + + EY D VT ++ + L Sbjct: 487 ARYLGHKTIPFEELAGKGKNQLTFDKI----------EIAKAAEYAAEDADVTMKLHQVL 536 Query: 176 EPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +E EL L I G +D T + ++ +++ + + Sbjct: 537 WEKLQQEPELVKLFDEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHA 596 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L+ LF + GL + T Q + + Sbjct: 597 EA-GQTFNLASTKQLQEILFEKLGLPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEH 655 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R G S+ P + R H +Q +T Sbjct: 656 R--------------------------GLSKLKSTYTDKLPQLINKKTGRVHTSYNQAVT 689 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +SDP+ I +R +A EG K+V AD + IE R++A ++ ++ + Sbjct: 690 ATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMI 749 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF G+D++ T A F V +VT +QR K + L Y + +++ G+ Sbjct: 750 NAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSF---GLSNQLGIGR 806 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +A+ + + +P A ++ R+ Sbjct: 807 ----------------AEAQKYMDLYFQRYP-----------AVQQFMTDIREV------ 833 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + +T+ GR L D+ + Sbjct: 834 ---AVEKGYVETLF-------------------------------GRRLYLPDIKSG--- 856 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVC 634 N R+ +Q + DI+ M+ A +++ VHDE+V Sbjct: 857 -NAILRKAAERVA-----INAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVF 910 Query: 635 ET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E D ++ ++ M S +PL AE Sbjct: 911 EVKADKIDHYSQ-LIKTEMEKAIS--LKVPLIAE 941 >gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823] gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823] Length = 951 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 104/677 (15%), Positives = 210/677 (31%), Gaps = 156/677 (23%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALE 62 D ET D+ A ++ +F + + D + K E Sbjct: 383 DTET---TDIN-------ALHADLVGMSFSYKEREAYYVAVPKDKKEIQAIVDEFKPFFE 432 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS-SQ 121 + + +AHN ++ VL + + ++A P + + + + + Sbjct: 433 HKSIEKIAHNMKYDIQVLHRY---GVQFAGPLFDTMIAHYLIQPESKQGMDFLAEYYLNY 489 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 + LI + KG+ + +Y D +T ++ + P K Sbjct: 490 TPVSIETLIGKKGKGQGNMGDLQP---------EAISDYACEDADITFQLKQLFAPQIEK 540 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + + + G +D+ ++ + E L++ ++ L G+ Sbjct: 541 DHLKSLFYDMEMPLVSVLAEMEEEGVAIDIPHLEAYSKQLAEETEGLEKRIKELA-GMDF 599 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L LF + + + T ++++ + ++ + Sbjct: 600 NVDSPKQLGDVLFEH--MKISSKAKKTKTGQYATSEDI-----------LQQHK------ 640 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 N + L + + P P R H Q +T + Sbjct: 641 -------NDHEIIPCILDYRQMKKLKSTYVDPLPTMKDPVDGRVHTSYMQTVTATGRLSS 693 Query: 352 SDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++P+ I +R IA S+ +L+ AD + IE R++A +A + ++AF+ Sbjct: 694 NNPNLQNIPIRSERGKEIRRAFIARSKDFQLMSADYSQIELRIIAALADDTNMIQAFKDK 753 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T A+ F+V VTKDQR+ K + + Y A + G++ + Sbjct: 754 VDIHRATAAKVFHVELDDVTKDQRSAAKAVNFGIIYGQSAFGLSQ---NLGISRTEAKQI 810 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + A + S + + Sbjct: 811 IDSYFA--------------------------------------------QYSTIKTYMD 826 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + ENG +RR LP S N R Sbjct: 827 NAVKDARENGYVETIMQRRRY---------------LPDINS------------ANAVVR 859 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PD 638 +Q + DI+ M+ KA ++L VHDE+V + D Sbjct: 860 GFAERNA-----VNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDELVFDVHND 914 Query: 639 TDEFNASMLYHLMTSNP 655 E ++ M + Sbjct: 915 EQEVMKKLVKEAMENAI 931 >gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50] gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50] Length = 904 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 117/659 (17%), Positives = 199/659 (30%), Gaps = 161/659 (24%) Query: 41 PVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI- 94 PV +P+ L+ LE+ + H++ ++ V N + + Sbjct: 363 PVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHV---FANEGVSLAGVAE 419 Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 T++ A + A + + ++L + K A Sbjct: 420 DTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQ----------IGFDEVAV 469 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALA 204 L G Y D T ++ + L P ++ E ++ + + G VD Sbjct: 470 ALAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQEL 529 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQ 260 + + E L+Q L G + ++L LF GL + T +T + Sbjct: 530 GRQSHKLGQEMLALEQRAYELA-GQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDE 588 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VLS + P + R G S+ Sbjct: 589 EVLSKLAQDYPLPQVLLEYR-------------------------------GLSKLKSTY 617 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375 P P R H Q +SDP+ I VR IA +G K Sbjct: 618 TDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-K 676 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++ + +AF GED++ T + F V A+V +QR K + Sbjct: 677 LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAI 736 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y G +AS G+ + + ++ A + Sbjct: 737 NFGLIYGMGVF---GLASNLGITRDAAQAYIDRYFTRYP------GVARYMDDTRRLARD 787 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 ++ T R Sbjct: 788 QGYVETVFGR-------------------------------------------------- 797 Query: 556 NNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 L LP R+ R G R+ +N Q + D++ M Sbjct: 798 ---RLQLPDIRAASGPRRQGAERAAINAPM------------------QGTAADLIKMAM 836 Query: 615 ------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++A + +++ VHDE+V E PD + A L LM + +PL AE Sbjct: 837 VAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVAT--LRVPLVAE 893 >gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12] gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 941 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 90/598 (15%), Positives = 177/598 (29%), Gaps = 86/598 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVA 70 D G D ++ +F ++ + + + +N V Sbjct: 374 DTETTGTDP--MDAELVGMSFSIAENQAFYIPVPAGREEATKIVREFESVFKNDKSLKVG 431 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127 N ++ VL+ N I I + ++A P + + E + + Sbjct: 432 QNIKYDMLVLQ---NYGIEIRGRLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 486 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181 ELI +N + Y D VT ++ LE K Sbjct: 487 ELIG-------PRGKGQKNMRDLSPKD--VYLYACEDADVTLKLKNILEQELKKNDAEKL 537 Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + I G +D ++ +++E+ +L G + + Sbjct: 538 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLA-GEEFNIASPK 596 Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF + + T+T T + VL S + ++ R Sbjct: 597 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYR------------ 644 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 G + P PR R H +Q +T +S Sbjct: 645 -------------------GLKKLLSTYIDALPQLINPRTGRIHTSFNQTVTATGRLSSS 685 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I +R I +G AD + IE R++A ++ ++ + AF +G D Sbjct: 686 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSGYD 745 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A+ + V +VT D R K + Y +A ++ L+ Sbjct: 746 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 802 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 E + + + + EH + K+ +SR + + + Sbjct: 803 --GYFETYPQVKAYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 855 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584 G A K + K + ++L L + + + Sbjct: 856 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQVV 913 >gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 915 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 110/681 (16%), Positives = 204/681 (29%), Gaps = 152/681 (22%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEAL----ENTDVT 67 D G+ + D+ + A + PV LK L + + Sbjct: 347 DTETTGLDALSADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTDELKRYLGPVLADVGIG 406 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 +AHN+ ++ +L + + +LA S+L G A +M Sbjct: 407 KIAHNAKYDLHILA---GAGLLVAGLDFDTMLAAHLLGESSLSLKGLAFNRLGIEMTPIT 463 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----- 182 LI G +C+ R +Y D +T +++ L P KE Sbjct: 464 ALIGE---GRHQKCISTCGL-------RETADYACADADMTLRLYQLLLPELEKENQSRL 513 Query: 183 -----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L + + G VDV + ++ + + T+++ + + Sbjct: 514 FDEVEMPLVPVIMDMEAAGIAVDVTILSAMSARLGRQLTEIEAAIYEQA-NRPFNIASPR 572 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF E L + T + + + + L Sbjct: 573 QLGEVLFEELKLPVGRKTRSGYRTDAAVLEGL---------------------------- 604 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + +R L++ ++ + P R R H +Q T +SDP+ Sbjct: 605 KDEHEIVRLILEYRTLAKLKSTYVDILPAMVSARDGRLHTSFNQARTATGRLSSSDPNLQ 664 Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R +A G L+ AD + I+ R LA ++G+ + AF ED++ T Sbjct: 665 NIPVRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSALIAAFNAEEDIHTAT 724 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + + ++T + R K + + Y G L + + Sbjct: 725 AMSLYGLPRDEITPEMRRFAKTVNFGVIYGMS-----------GYGLEQATEMSR----- 768 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 E++ F + E +P + Sbjct: 769 ---EESTRFIQTYFERYP-------------------------------------GVRAY 788 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 N AR R V + L R + + N R+ Sbjct: 789 LNLTKEQARSRGYVETI------------------LGRRRYIPDINAANRQVREAAERMA 830 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASM 646 VQ S DI+ M+ + ++L VHDE++ E P + S Sbjct: 831 -----INMPVQGTSADIIKVAMLEVRREMDSQGLESRLLLQVHDELIFEVPQAELMFMSE 885 Query: 647 LY-HLMTSNPSWAKGLPLKAE 666 L M++ +PL+ + Sbjct: 886 LASRRMSAAVE--LKVPLRVD 904 >gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73] gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans] Length = 922 Score = 263 bits (673), Expect = 6e-68, Method: Composition-based stats. Identities = 89/536 (16%), Positives = 164/536 (30%), Gaps = 86/536 (16%) Query: 62 ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 E+ V + ++ VL+ + D + ++ +R + A + +G Sbjct: 404 EDPAKRKVGQHGKYDLHVLRRHGVQVHGYADDTMLESFVLNSTASRHDMDSLAKRYLGYD 463 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +G + IA + A Y D +T + + L Sbjct: 464 TVKYEDVAGKGAKQIA-----------------FSQVAIDDATGYAAEDADITLRLHRAL 506 Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E L + I G CVD+A +Q++ Q+ + Sbjct: 507 SAQLDAEPALARVYREIEMPLVPVLTRIEANGVCVDIAELRKQSQVLSQRMLAAQQKAVA 566 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF E L +T + L + Sbjct: 567 LA-GRSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEEALEAIADQHELP------- 618 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R L++ G ++ P P R H Sbjct: 619 ------------------------RVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYH 654 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +SDP+ I +R +A G+KL+ D + IE R++A ++ + Sbjct: 655 QAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSED 714 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF G D++ T A F QV+ ++R K + L Y A +A Sbjct: 715 PGLLRAFSQGVDVHRATAAEVFGRTLEQVSANERRAAKAINFGLMYGMSAF---GLARNL 771 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ V + +F M+E + G ++ Sbjct: 772 GIGRGEAQDYV--ALYFSRYPAVRDFMERMREQARTQGYVETLFGRRL-----YLNDINA 824 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 + L +A G A KR V + +++ + +++L LV+ Sbjct: 825 KQQGLRAGAERAAINAPMQGTAADIIKRAMVSVDTWLQDHRARALMILQVHDELVF 880 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 14/141 (9%) Query: 538 IIARKRRDVPLVYMKKD---KNNLILMLPSGRSLVYRD-VGNNRSYLNTTTRQLTREYTY 593 I + +D +Y + ++ + M R+ Y + + R YLN + Sbjct: 773 IGRGEAQDYVALYFSRYPAVRDFMERMREQARTQGYVETLFGRRLYLNDINAKQQGLRAG 832 Query: 594 GGKLTEN-IVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP-DTDEFNAS 645 + N +Q + DI+ M++ +A ++L VHDE+V E D E Sbjct: 833 AERAAINAPMQGTAADIIKRAMVSVDTWLQDHRARALMILQVHDELVFEVDADFVEILLP 892 Query: 646 MLYHLMTSNPSWAKGLPLKAE 666 + M + +PL + Sbjct: 893 EVTWRMAAAAE--LKVPLVVD 911 >gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39] gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39] Length = 937 Score = 263 bits (673), Expect = 6e-68, Method: Composition-based stats. Identities = 91/577 (15%), Positives = 183/577 (31%), Gaps = 71/577 (12%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVA 70 D G A ++ +F + K LEN ++ + Sbjct: 369 DTETTGTD--ANLAELVGLSFSVKPGAGYYIPLPPERTLAQPILDEFKVVLENENIAKIG 426 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N ++ +LK + I + +LA P + LS + I Sbjct: 427 QNIKYDMLILKWY---GLEIKGKLFDTMLAHYLIDPDTRHNMD---VLSENYLCYSPISI 480 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SS 180 + + R+ P +Y D VT ++ P+ + Sbjct: 481 TKLIGPKGKNQGNMRDVPV-----AQVVDYAAEDADVTLQLANVFRPMLKDLNAEQLATE 535 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L Y+ I G +D+ ++ ++ + K ++ + G+ + ++L Sbjct: 536 VENPLIYVLADIESEGVRIDIETLVNYSKELETDIRKFEKNVYDKC-GVEFNLASPKQLG 594 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 LF +L P+A + + + +L L + + + Sbjct: 595 EVLFDRL--------------------QLDPKAKKTKTGQYQTGEDVLLALASKSDIVQD 634 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 L F + P P+ R H +Q + +++P+ I Sbjct: 635 ------ILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSYNQAVAATGRLSSNNPNLQNIP 688 Query: 361 -----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 VR I E L+ AD + IE R++A ++ E+ L+AF G D++ T A Sbjct: 689 IRTERGREVRRAFIPRDENHVLLSADYSQIELRIIADISKEENMLQAFNQGLDIHTATAA 748 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + + VA +VT QR K + + Y A + + G+ A ++ + Sbjct: 749 KVYGVAIEEVTSTQRRNAKAVNFGIIYGQSAFGLSQ---SLGIPRKEAAEIID--QYFTQ 803 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + + E+ F+ T R ++ R +S + + Sbjct: 804 YPGIKKYMSDTMNFARENG----FVETILGR-RRYLRDINSANQTVRGFAERNAINAPIQ 858 Query: 535 GKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 G A K + + + + + LV+ Sbjct: 859 GSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELVF 895 >gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645] gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645] Length = 880 Score = 263 bits (673), Expect = 6e-68, Method: Composition-based stats. Identities = 115/692 (16%), Positives = 212/692 (30%), Gaps = 149/692 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------DCVHDPVMP 54 L D ET S ++A+ ++ +F +D D D + Sbjct: 297 KRLSFDTETTSTNP-------RWAD---LVGISFSWDQGEGVYIPIRSPEGDVKLDESLV 346 Query: 55 -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111 + L+ LEN+ + V N ++ VL+ + + + ++A + Sbjct: 347 LEKLRPILENSAIEKVGQNLKYDLVVLR---GVGVNVRGASFDTMVAHYLLEAGARSHGL 403 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 +L+ + + ELI G + P G Y D + + Sbjct: 404 DELSLRYLQHETVKISELI-----GTGKNQIRMDQVPV-----DKVGYYAAEDADIPLRL 453 Query: 172 FKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 L L+ E L + + G VDV + L++ L++E Sbjct: 454 DPILSERIEAEGLGDLLTDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLERE 513 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + L G + ++L T LF E L + T+T ++L Q Sbjct: 514 IYQLA-GRDFNINSPKQLGTVLFDELNLPVIKKTKTGPSTDAEVLEQLAKQHDMPAK--- 569 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 +QF ++ P + R H +Q Sbjct: 570 -------------------------IVQFRQYAKLKGTYVDALPVLICSKTDRVHTSFNQ 604 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 ++ ++DP+ I S +RS I KL+ AD + IE RVLA +G+ Sbjct: 605 VVAATGRLSSNDPNLQNIPIRTQESREIRSAFIPGTPDWKLLCADYSQIELRVLAHFSGD 664 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +++++ ED++ + + V QVT R K + + Y +A + Sbjct: 665 PALMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVYGQSPF---GLAKSL 721 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ + + + E D ++ T R Sbjct: 722 DIDKDEAYGFIDAYFKRYP------GVDVLMEQILVDCQRDGYVRTILGR---------- 765 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + I+ + R R R L Sbjct: 766 -------------RRAIDGVRTADKRDRLK--------------------RQLTMP---- 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ +NT + G + I A+ R + + ++L +HDE+V E Sbjct: 789 ERTAINTVIQ---------GSAADIIKLAMLR---VHRRLEKEGSPAKLLLQIHDELVFE 836 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 TP + L M S + A +PL + Sbjct: 837 TPPEYLEQLAQLVREEMESARNLA--IPLVVD 866 >gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057] gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056] gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059] gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057] Length = 923 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 118/683 (17%), Positives = 213/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD H+ PQ L Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHI---SANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+ E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + G + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIA-GETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLTE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T E+++N+ + + +P + Sbjct: 777 TR-------------------EESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIEVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT--DEFNASMLYHLM 651 E+V E DE + + +M Sbjct: 878 ELVFEVDSNIADELS-KQIADVM 899 >gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34] gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus metallidurans CH34] Length = 934 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 108/635 (17%), Positives = 191/635 (30%), Gaps = 156/635 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLS 119 LE+ + + ++ V N + + T++ + A +L Sbjct: 416 LEDPARPKLGQHLKYDSHV---FANHGVALRGIAHDTMLESYVLASYRNHGMDSLAERLL 472 Query: 120 SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 S K +E+ C ++ +D+ + P EY D VT + ++++P Sbjct: 473 SLKTITYEEV----CGKGANQIGFDQIDLP-------RATEYAAEDADVTLRLHRKMQPQ 521 Query: 179 SSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E + + Q I G +D + + + L++ Sbjct: 522 LEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQSAELGLRMMDLERAAHD-AA 580 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + +++ LF + L + T +T + VL P + Sbjct: 581 GQPFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLADDYPLPKLLL------ 634 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + G S+ P P R H Q Sbjct: 635 -------------------------DYRGLSKLKSTYTDKLPKMVNPNTGRVHTSYGQAT 669 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I +R IA+ G +V AD + IE R++A ++G++ Sbjct: 670 AVTGRLASTDPNLQNIPVRTEEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENL 729 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T F V V+ +QR KV+ L Y A +AS G+ Sbjct: 730 LRAFANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAF---GLASNLGIE 786 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 K + R Sbjct: 787 REAA--------------------------------------------KHYIDRYFMRYP 802 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + Q + E G RR L LP + + Sbjct: 803 GVAHYMEQTRQTAREQGYVETVFGRR---------------LWLP------------DIN 835 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 N RQ +Q + D++ M+ + G ++ VHDE+ Sbjct: 836 GGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVQDWLEGERLGTRQIMQVHDEL 890 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 V E P + E L LM + + +PL AE Sbjct: 891 VLEVPQAELELVRVKLPELMCAVAT--LNVPLVAE 923 >gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70] gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70] Length = 930 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 90/549 (16%), Positives = 183/549 (33%), Gaps = 74/549 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LEN ++ V N ++ ++ +++ + T++L+ A Sbjct: 409 LKPVLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSY-DTMLLSYVLDSTGRHNMDELAK 466 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + +++ + T + EY D +T ++ + L Sbjct: 467 RYLGHQTIHFEDIAGKGKAQLTFNQI----------PLEQAAEYAAEDADITMKLQQVLW 516 Query: 177 PLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + + EL L Q I G +D + +Q + V T L+Q+ L Sbjct: 517 EKVAAQPELVKLYQTMELPLASVLSRIERHGVLIDSDALFSQSQQIGVRLTALEQQAYEL 576 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + L + T T + VL + +R Sbjct: 577 A-GQQFNLASTKQLQEILFDKLSLPVLKKTPKGAPSTNEEVLEELAYEHALPKILVEHR- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P R H Q Sbjct: 635 ------------------------------GLSKLKSTYTDKLPLMVNKDTGRVHTSYHQ 664 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA EG +++ AD + IE R++A ++ ++ Sbjct: 665 AVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAHLSQDK 724 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF G+D++ +T A F + AQV+ +QR K + L Y + ++ G Sbjct: 725 GLINAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIYGMSSF---GLSRQLG 781 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + F ++E ++ T +R + S Sbjct: 782 IPRHEAQKYMD--LYFQRYPGVQAFMHDIRETAKAQG----YVTTLFDR-RLYLPDIQSS 834 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + G A KR + L + ++ +++ LV+ + Sbjct: 835 NAIRRKAAERVAINAPMQGTAADIIKRAMITLDREIAGQPDIKMIMQVHDELVFEVRTDK 894 Query: 577 RSYLNTTTR 585 + T + Sbjct: 895 IEHFRTIIK 903 >gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] Length = 928 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 105/637 (16%), Positives = 189/637 (29%), Gaps = 152/637 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ N ++ VL N I + +LA + + Sbjct: 406 LKPWLEDASKKKCGQNLKYDCHVLA---NHGIALAGIADDSMLASYVLESHQRHNMDD-- 460 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--- 173 L+ + + E C + + Y D +T + + Sbjct: 461 -LARRHLGENTVSYEEICGKGAKQIG------FSEVDVDIAANYAAEDADITLRLNQFFA 513 Query: 174 -----RLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 LE + E + + + G +D + + + +L+Q L Sbjct: 514 GQLFGDLEKVYRDIELPVAEVLFKMERHGVLIDRDKLAAQSHQLGSQMLELEQRAYELA- 572 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF + + + + +T T + VL P + R Sbjct: 573 GQPFNLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTDESVLEQLALDHPLPKCILEYR- 631 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G ++ P P+ R H Q Sbjct: 632 ------------------------------GLAKLKSTYTDKLPTLIYPQTGRVHTTYAQ 661 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I VR IA G ++V AD + IE R++A ++ ++ Sbjct: 662 AVAITGRLASNDPNLQNIPVRTAEGRRVREAFIAPAGWQIVSADYSQIELRIMAHLSDDE 721 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF +GED++ T A F V A VT DQR K + L Y A +A+ Sbjct: 722 GMLKAFASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLIYGMSAF---GLAAQLD 778 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + E A Sbjct: 779 IERSAAQQ------YIDRYFMRYPGVAEYMQATREKAR---------------------- 810 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 Q + +T+ +R +P + + P R+ G Sbjct: 811 --------EQGYVETV-------FGRRLYLPDIKLSN---------PGRRA------GAE 840 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 R+ +N Q + D++ M+ +++ VHD Sbjct: 841 RAAINAPM------------------QGTAADLIKLAMIAVQDWLERDGLQSKLIMQVHD 882 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666 E+V E P + L +M +PL AE Sbjct: 883 ELVLEVPQAELEQVKRRLPEIMAGAAE--LKVPLLAE 917 >gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] Length = 998 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 109/637 (17%), Positives = 198/637 (31%), Gaps = 142/637 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + LK+ LE+ V VA N ++ ++K + + + T++++ L+A Sbjct: 470 ERLKDLLEDEAVLKVAQNLKYDYLLMKRH---GVVMRSFDDTMLISYV------LEAGKT 520 Query: 115 ALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + G IA + + Y D VT ++ Sbjct: 521 THGMDTLSERWLGHTPIAY----KDVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWM 576 Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P E+ L + + +RG VD + L+ + + ++E+ Sbjct: 577 ALKPRLVSERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEIY 636 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L LF GL T+T T +VL + Sbjct: 637 ELA-GERFNIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQVLEDLAAEGAELP----- 690 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + + ++ P P R H Sbjct: 691 -------------------------RKIVDWRQLTKLKSTYTDALPSYIHPETKRVHTSY 725 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T +S+P+ I +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 726 ALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVAD 785 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 AFE G D++ T + F V + + R K + + Y A +A+ Sbjct: 786 IPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQ 842 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + +K ++ + R E A Sbjct: 843 LSIARSEAGDYIK------KYFERFPGIRDYMEATKAFAR-------------------- 876 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDV 573 + +TI +A P RS Sbjct: 877 ----------ENGYVETIFGRRAHY-----------------------PEIRSSNPSVKA 903 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 N R+ +N + G + I +A+ R E + A K ++L VHDE++ Sbjct: 904 FNERAAINAPIQ---------GSAADIIRRAMIR---IEPALEAEKLSARMLLQVHDELI 951 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 E + + E ++ +M A + PLK + Sbjct: 952 FEVEEAEIEKTLPVVVSVMEDAAMPAISMRVPLKVDA 988 >gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029] gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138] gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029] gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138] Length = 870 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 111/605 (18%), Positives = 193/605 (31%), Gaps = 142/605 (23%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + +LK+ D+T +N R A N I I L LA Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLK--RDC-HALLNAGIVIREISYDLALAEH------ 398 Query: 109 LKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L G + S + G E RF K + L P E + FGE+ + Sbjct: 399 LTNGGGKISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQY--FGEFVAYLPII 456 Query: 168 TREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 I + + LS E L + ++ G +DV L + + E L +E Sbjct: 457 KDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEE 516 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + L+ G + + ++L L+ E GL D ++T VL + + P ++ Sbjct: 517 IYDLS-GRPFNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLA--- 572 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 F + P Q R H DQ Sbjct: 573 ----------------------------FRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQ 604 Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 DP+ I +R SE + AD + IE R LA ++ + Sbjct: 605 TGAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQD 664 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+GED++ T ++ F+V QV+K+QR K + + Y A +A Sbjct: 665 KSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAF---GLAKVL 721 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +++ L++ + + +F + A +DL + T R Sbjct: 722 KISIGEAQELIQA--YFSRYPEIAHFVEETI----QQAAKDLRVTTMLGR---------E 766 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R+ + WNE P R+ Sbjct: 767 RIIDSWNEF--------------------------------------PGSRAAS------ 782 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 R +NT + + +++ M++ ++A ++L +H Sbjct: 783 GRFAVNTRIQ------------------GSAAELIKLAMLDISQAIKQQQMKSRMLLQIH 824 Query: 630 DEIVC 634 DE++ Sbjct: 825 DELLF 829 >gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] Length = 923 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 116/697 (16%), Positives = 215/697 (30%), Gaps = 167/697 (23%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 ID ET + +D + AE ++ F+ FD H+ Sbjct: 350 HFAIDTET-TSLD------YRIAE---MVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 + +K LEN V + H+ ++ + N I + W +LA +A Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHI---FANHGIELKGWYFDSMLASYVLNAAATRHG 456 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 457 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------EIEVAAHYAAEDAHVTYR 506 Query: 171 IFK----RLEPLSSKEQELWYLDQT-------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +L+ E L+ ++ + + G +D A L+ L+ Sbjct: 507 LYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLE 566 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + + + +++ LF + G+ + T S+++ + + Sbjct: 567 NQAMEIAD-ETFNIASPKQVGEILFDKLGI---KGGKKTATGQYSTSESVLEKIEHPLAE 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 623 I--------------------------ILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSY 656 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 657 HQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 716 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y + Sbjct: 717 DDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGF 776 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 T ++++N+ + + +P + Sbjct: 777 TR-------------------QESQNYIKQYFQRYP------------------GIYEYM 799 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R ++ + Q F +TI GR L D+ Sbjct: 800 QRTRQVAS--EQGFVETIL-------------------------------GRRLYTPDID 826 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N R+ L Q + DI+ M+ K ++L VHD Sbjct: 827 ----ARNVMVRKAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQAKLLLQVHD 877 Query: 631 EIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E E + + +M S +PL E Sbjct: 878 ELVFEADQNIAEELSKQIASVMESVVE--ISVPLVVE 912 >gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37] gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37] Length = 934 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 103/654 (15%), Positives = 188/654 (28%), Gaps = 157/654 (24%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D + +P LK LE+ V + N ++ + I I T++++ Sbjct: 396 DAKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY---GIEIAPIDDTMLMS 452 Query: 101 -RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 +G + + + K+L+ + +DR Sbjct: 453 YALHGGEHQHGMDTLSERYLAHTPIPIKDLLGTG----KSQITFDR------VPLDKATG 502 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T + +P + E+ L + + + RG VD A ++ Sbjct: 503 YAAEDADITLRLALTFKPQLHRAHVTRVYETLERPLVPVLKAMEMRGIKVDRATLSRMSG 562 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265 + +L++E+ +L G + +L LF + L + +T VL Sbjct: 563 KFAQKMAELEEEIHALA-GEKFNVGSPAQLGDILFEKMSLPGGKRGKNGKYSTPADVLED 621 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ Sbjct: 622 LATEHDLPGRVLDWRQL-------------------------------SKLKSTYTDALQ 650 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 P R H + ++DP+ I +R +A EG LV D Sbjct: 651 EHINPDTGRVHTSYSIAGANTGRLASNDPNLQNIPVRSEEGRRIREAFVAPEGHTLVSLD 710 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA MA +AF G D++ T + FNV ++T D R K + + Sbjct: 711 YSQIELRILAHMADIDALKQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAINFGVI 770 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + +A+ F E P I+ Sbjct: 771 YGISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP--GIKQYMDD 809 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 T + +H RV ++ + + Sbjct: 810 TV------KFANEHKRVETMFGRV-----------------------------------I 828 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616 P + R R+ +N +Q + DI+ M+ Sbjct: 829 HTPEIGAKGPRAGFAKRAAINAP------------------IQGTAADIIRRAMVRMPDA 870 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN---PSWAKGLPLKAEG 667 K ++L VHDE++ E D + + + N P +PL + Sbjct: 871 IAKLPAKMLLQVHDELIFEVEDGAAGDLIDVAREVMQNACDPVVKLDVPLVVDA 924 >gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] Length = 956 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 105/598 (17%), Positives = 197/598 (32%), Gaps = 84/598 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVA 70 D G+ ++ AF +D + + + L+ EN D+ V Sbjct: 389 DTETTGLNP--LTAELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRPFFENEDIQKVG 446 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VL DI + + +LA P A + + L Sbjct: 447 QNLKYDIKVLHKY---DIEVRGPLFDTMLAHYLINPDMRHNMDVLAETYLNYSPVSIETL 503 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I + K + R+ P + EY D +T ++ + E Sbjct: 504 IGKKGKNQKS----MRDVPLEDQ-----TEYAVEDADITLQLKEHFEKELGDANTQKLFD 554 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +D A + L + ++ + L+ + G + ++L Sbjct: 555 DIEIPLLRVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEA-GEEFNIGSPKQL 613 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T T T + VLS Sbjct: 614 GEILFDKLKLVEKPKKTRTGQYSTAEDVLSYLAADHTI---------------------- 651 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ L + G ++ P Q R H + Q + +++P Sbjct: 652 ---------IQNVLDYRGLAKLKSTYVDALPEQVE-EDGRVHTDYMQTVAATGRLSSNNP 701 Query: 355 DPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR + E L+ AD + IE R++A ++ E ++AF+ GED+ Sbjct: 702 NLQNIPIRTERGRQVRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEAFKNGEDI 761 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T A+ FNV +VT++QR+ K + + Y A +++ T L + L+ T Sbjct: 762 HASTAAKVFNVPINEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLTRSESKDLIDT 818 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 R N + A ED ++ T R ++ + +S + + Sbjct: 819 YY------KTYPKLRNYMSNLVDDAREDGYVSTVLGR-RRYLKDINSSNGVVRGAAERNA 871 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTTR 585 G A K + + + N ++L LV+ N + T + Sbjct: 872 VNAPIQGSAADIIKVAMINIHKKLAEGNFKTKMLLQVHDELVFDVPKNELEDIKTLVK 929 >gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] Length = 921 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 122/683 (17%), Positives = 214/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52 ID ET + +D + AE ++ F+ FD H HD Sbjct: 348 HFAIDTET-TNLD------YRIAE---LVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREH 397 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 + + +K LEN V + H+ ++ + N I I W +LA +A Sbjct: 398 VLEQIKPILENEQVKKIGHHLKYDAHI---FANHGITIQGWYFDTMLASYVLNAAATRHG 454 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K ++ + + Y D VT Sbjct: 455 MDDVARVYLSHLTTTFEQIAGKGAKQKSFNQI----------ELEVAAHYAAEDAHVTYR 504 Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ L L + E + + + + G +D A L+ L+ Sbjct: 505 LYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQTLE 564 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + L G + +++ LF GL + T S+++ + + Sbjct: 565 NQATELA-GEAFNIASPKQVGEVLFDRLGL---KGGKKTATGQYSTSESILEKIEHPLAE 620 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 621 --------------------------VILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSY 654 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 655 HQALTATGRLSSTDPNLQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQ 714 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A + VT DQR K + L Y G F + Sbjct: 715 DDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY--GMSEF-GLTRQ 771 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G E++ ++ + +P + ER ++ R Sbjct: 772 LGFTR----------------EESRSYIARYFQRYP-------GVLDYMERTRQIAR--- 805 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 Q F +TI GR L D+ Sbjct: 806 ----------EQGFVETIL-------------------------------GRRLYTPDIL 824 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N N +Q L Q + DI+ M+ K ++L VHD Sbjct: 825 AN----NKMIKQAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQAKLLLQVHD 875 Query: 631 EIVCETPDT--DEFNASMLYHLM 651 E+V E +T DE + + +M Sbjct: 876 ELVFEADETIADELS-KQIAEVM 897 >gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222] gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222] Length = 940 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 102/636 (16%), Positives = 180/636 (28%), Gaps = 147/636 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V + N ++ VL +P+ + L + + Sbjct: 417 LKPVLEDPSVLKIGQNIKYDWKVLARHGIRMVPLDDTM--------------LLSYAQNA 462 Query: 117 KLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKR 174 + M+E +L C +++ N + A EY D VT +++ Sbjct: 463 GAHNHGMDELADLYLGHRCLPIKDLIGSGKSQINFSQVAIDKASEYAAEDAEVTWRLWRH 522 Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L P E+ + + + G +D ++ + L+ E+ Sbjct: 523 LRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKRMSNAFAQKMAGLEAEIHE 582 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF GL +T T VL +V + Sbjct: 583 LAGG-PFNVGSPKQLGEILFERMGLAGGKQGKTGAFSTGAEVLEDLAAEGHELPARVLDW 641 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P P R H Sbjct: 642 R-------------------------------AISKLKSTYTDALPLHVNPETGRVHTSY 670 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 ++DP+ I +R +A+ G +LV D + IE R+LA +A Sbjct: 671 SIAGAQTGRLASTDPNLQNIPVRTDEGRRIREAFVAAPGMRLVSLDYSQIELRILAHVAQ 730 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF G D++ T ++ F V + R K + + Y +A Sbjct: 731 IPALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAKAINFGVIYGISGF---GLARN 787 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + T E + + R + A +D F+ T R Sbjct: 788 LRIPRAEAQAFIDT--YFERFPE----IRAYMDRTVAGAKQDGFVRTLFGR--------- 832 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +M P G Sbjct: 833 --------------------------------------------RIMTPGINQSGPAAGG 848 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R+ +N + G + I +A+ R A + A ++L VHDE+V Sbjct: 849 ARRAAINAPIQ---------GAAADIIRRAMIRMPQAIAHLPA-----RMLLQVHDELVF 894 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667 E + + +M A +PL + Sbjct: 895 EVEEAAVPELVEVARGVMQGAADPAVRLDVPLIVDA 930 >gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822] gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis] Length = 904 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 117/659 (17%), Positives = 199/659 (30%), Gaps = 161/659 (24%) Query: 41 PVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI- 94 PV +P+ L+ LE+ + H++ ++ V N + + Sbjct: 363 PVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHV---FANEGVSLAGVAE 419 Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 T++ A + A + + ++L + K A Sbjct: 420 DTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQ----------IGFDEVAV 469 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALA 204 L G Y D T ++ + L P ++ E ++ + + G VD Sbjct: 470 PLAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQEL 529 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQ 260 + + E L+Q L G + ++L LF GL + T +T + Sbjct: 530 GRQSHKLGQEMLALEQRAYELA-GQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDE 588 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VLS + P + R G S+ Sbjct: 589 EVLSKLAQDYPLPQVLLEYR-------------------------------GLSKLKSTY 617 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375 P P R H Q +SDP+ I VR IA +G K Sbjct: 618 TDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-K 676 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++ + +AF GED++ T + F V A+V +QR K + Sbjct: 677 LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAI 736 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y G +AS G+ + + ++ A + Sbjct: 737 NFGLIYGMGVF---GLASNLGITRDAAQAYIDRYFTRYP------GVARYMDDTRRLARD 787 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 ++ T R Sbjct: 788 QGYVETVFGR-------------------------------------------------- 797 Query: 556 NNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 L LP R+ R G R+ +N Q + D++ M Sbjct: 798 ---RLQLPDIRAASGPRRQGAERAAINAPM------------------QGTAADLIKMAM 836 Query: 615 ------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++A + +++ VHDE+V E PD + A L LM + +PL AE Sbjct: 837 VAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVAT--LRVPLVAE 893 >gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2] gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2] Length = 891 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 117/694 (16%), Positives = 209/694 (30%), Gaps = 149/694 (21%) Query: 8 FETRSPIDLTKCGICKYAEDVCV-ILFAFGFDDHPVELW---------DCVHDPVMPQVL 57 ET D+ ++ + L F P + D P + +V+ Sbjct: 306 IETFKQADILSVDTETTSKHPMLAKLVGISFAVEPHRAYYIPVGHTGMDAKKQPDLSRVI 365 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112 + LEN +V V N ++ VL I + ++A P Sbjct: 366 ALIRPLLENPEVKKVGQNIKYDYIVLTRH---GIRMQGLGFDTMIASHLLNPSQRGHSLD 422 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A+ L K KE+ + + ++ C G + + Sbjct: 423 KIAMDLLDHKTIRYKEVTGSGKTQIGFNEVEIQTALDYAAEDADITLLCHGILKQKLQES 482 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L+ ++ E L + + G VD L++ + E L+ ++ +L G + Sbjct: 483 NLLDLMNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTLETQIYALA-GETFN 541 Query: 233 SRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L T LF + L + +T VL+ + ++ R Sbjct: 542 INSSQQLGTILFEKLQLPAKKKTKKKTGYSTDVEVLNELAEHHELPEKILRYRSL----- 596 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + P R H +Q IT Sbjct: 597 --------------------------GKLKSTYSDALQELIHPETGRIHTSFNQAITATG 630 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R + G LV AD + IE R+LA A ++ +++F Sbjct: 631 RLSSSDPNLQNIPIRTNEGKMIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQSF 690 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ED++ T A F P +T+D R K + + Y A K+A + T Sbjct: 691 RNDEDIHTRTAAEVFQAFPEFITEDLRRQAKAINFGIMYGMSAF---KLAKEINVTRKTA 747 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + +R + + Sbjct: 748 QTYIDS--------------------------------------------YFARYAGVKR 763 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + EQ G+ R+ R L N+ + N Sbjct: 764 FIDKTIEQAKTTGEVTTILGRK---------------------RRL------NDINASNV 796 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET 636 R+L VQ + D++ M+N + ++L+VHDEI+ ET Sbjct: 797 NLRKLAERAA-----INTPVQGSAADLIKLAMINMDRELKKTPLKSRMLLSVHDEIIFET 851 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLK---AEG 667 P ++ L + +A +PLK A G Sbjct: 852 PLAEKEALMDLARQVMEG-VFALKVPLKVNIAAG 884 >gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 999 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 110/656 (16%), Positives = 200/656 (30%), Gaps = 171/656 (26%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------ 104 +P+ LK LE+ V VA N ++ +++ I + T++++ Sbjct: 466 DALPR-LKSLLEDAAVLKVAQNLKYDYLLMQRY---GIETRSFDDTMLISYVLDAGTGAH 521 Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 P + K +G GK N Y Sbjct: 522 GMDPLSEKFLGHTPIPYKDVAGSGKA-----------------NVTFDLVDIDRATHYAA 564 Query: 163 GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT ++ L+P + E+ L + + RG VD + L+ + Sbjct: 565 EDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 624 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 +L+ E+ L G + ++L LF + GL T+T T +VL Sbjct: 625 QGAARLEDEIYVLA-GERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSAQVLEDLAA 683 Query: 269 L-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 ++ + R ++ P Sbjct: 684 AGFELPRKIVDWRQL-------------------------------TKLKSTYTDALPGY 712 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 R H T +S+P+ I +R+ I++ G KL+ AD + Sbjct: 713 VHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYS 772 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE RVLA +A KAFE G D++ T + F V + + R K + + Y Sbjct: 773 QIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG 832 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A +A+ + + +K ++ + R E+ A + ++ T Sbjct: 833 ISAF---GLANQLSIERSEAGDYIK------KYFERFPGIRDYMESRKAMARDKGYVETI 883 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 +R + P + Sbjct: 884 FG-------------------------------------RRINYPEIRSSN--------- 897 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 PS R+ N R+ +N +Q + D++ M+ A Sbjct: 898 PSVRAF------NERAAINAP------------------IQGSAADVIRRAMIRMEPALA 933 Query: 623 --------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 ++L VHDE++ E D D E ++ +M + A + PL+ + Sbjct: 934 EVGLGDRVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLRVDA 989 >gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132] gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132] Length = 933 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 93/533 (17%), Positives = 183/533 (34%), Gaps = 68/533 (12%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE 114 K EN ++ VA N ++ T+L + + I +LA P Sbjct: 409 EFKPLFENENIRKVAQNIKYDLTILATY---GVEVKGEIYDTMLAHYILEPDQRHGMDYL 465 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A S K +LI + K L R+ P EY D +T ++ Sbjct: 466 AETYLSYKPIPISDLIGKGKK-----QLNMRDVP-----LEQIKEYAAEDADITLQLKHV 515 Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+ L E L ++ + G +DV H L+ + + K +++ Sbjct: 516 LDAQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEALHDLSNTLQKDLAKTQEDIFQ 575 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 L G+ + ++L LF + +++ + T ++ + + Sbjct: 576 LA-GMEFNVGSPKQLGEILFEH--MKIDEKPKKTPTGQYATGEDI--------------- 617 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 ++ E + R L F S+ P R R H +Q + Sbjct: 618 ---LVNYEADHEIV------RKILDFRELSKLKSTYVDALPTLISKRTGRIHTTYNQAVA 668 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 +++P+ I +R I E ++ AD + IE R++A +G++ Sbjct: 669 ATGRLSSTNPNLQNIPIRTERGREIRKAFIPGGEEFTILSADYSQIELRIMADFSGDESM 728 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF+ G D++ T ++ F V+ +V D R K++ + Y A +A G+ Sbjct: 729 LEAFDNGMDIHAATASKVFGVSLEEVNSDMRRKAKMVNFGIIYGISAF---GLAQRLGIP 785 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +++ ++ +++ E E + +G ++ R +SR Sbjct: 786 RGEAKNIIDA--YFTQFPKVKSYMDQTIEKARELEYVETILGR-----RRYLRDINSRNQ 838 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 + G A K + + K +N ++L LV+ Sbjct: 839 TNRGFAERNAINAPIQGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDELVF 891 >gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] Length = 874 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 111/664 (16%), Positives = 193/664 (29%), Gaps = 163/664 (24%) Query: 28 VCVILFAFGF--DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 V L D V + V+ + + + L + + V +N+ V AC Sbjct: 338 PAVTLIGLAIWAGDEAVYIPHNVNGWEL---VWDLLADETIPKVTYNAK---DVCNACKA 391 Query: 86 LDIPIHRWICTLVLARSNGLPSAL-----KAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + + LA P+A + + L L+ M+ K Sbjct: 392 KGTELRGLCFDIQLAAYLLEPTAAKYPLTELACQHLGLAVGDMD----------KEHLGT 441 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCV 199 P++ W V + + L L E L + + G V Sbjct: 442 -------PDYA-GWAAEVVQRLYPVLKEKLVAAGLAELYEEIELPLVPVLSEMEIAGIRV 493 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D+ L Q + L E+ L G + +L LF L + T+T Sbjct: 494 DLTQLDALAQEITDRIETLLTEIYQLA-GQEFNVNSTRQLGHILFEVLKLPVIKKTKTGY 552 Query: 260 ---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 VL P + R+ + L+ L + + +D Sbjct: 553 STDAEVLEKLAGQHPLIDCLLEYRLLTKLKSTY-LDGLRDLIRAD--------------- 596 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS 371 R H +Q +T +S+P+ I I +R + Sbjct: 597 ---------------TGRIHTHFNQTVTATGRLSSSEPNLQNIPIRTEIGRRIRELFVPG 641 Query: 372 EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 G ++ AD + IE RVLA M+G+ + AF +D++ T A F V A+VT RA Sbjct: 642 PGYDWIMSADYSQIELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRA 701 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y ++ G++ + + A Sbjct: 702 RAKAVNFGIVYGISDF---GLSRDIGVSRKEAGQYIDSYFAKYR---------------- 742 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + N + + G RR Sbjct: 743 ----------------------------GVKNYIDNVINLARQQGYVTTLFGRR------ 768 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 LP S + R+ +NT +Q + DI Sbjct: 769 ---------RFLPDINSGNFNQRAFAERTAMNTP------------------IQGTAADI 801 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLP 662 + + M+ + ++L VHDE+V E + + + L M + A +P Sbjct: 802 IKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVAEAERVLVAQLVKQAMEDAVTLA--VP 859 Query: 663 LKAE 666 L A+ Sbjct: 860 LVAD 863 >gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383] gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383] Length = 917 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 120/699 (17%), Positives = 213/699 (30%), Gaps = 166/699 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID + D + ++ +F + H P MP+ L Sbjct: 336 IDAAALTAFDTETTSLDPML--ARLVGLSFSVESGKAAYLPVAHRGPDMPEQLPLDEVLA 393 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 K LE+ D V + ++ VL N DI ++ TL+ + Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLA---NYDIALNGIEHDTLLESYVVESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K + +++ + K A EY D +T ++ Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQ----------IGFDEVALTQAAEYAAEDADITLQLHHA 500 Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P ++E L ++ + I G +D + + +L+ + Sbjct: 501 LYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEIATRLIELEAQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + +T + VL + P + + Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P P R H Sbjct: 620 R-------------------------------GLSKLKSTYTDKLPRMVNPSTGRVHTNY 648 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IAS G ++V AD + IE R++A ++G Sbjct: 649 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISG 708 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF GED++ T A F V P +V DQR I KV+ L Y A +AS Sbjct: 709 DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 765 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + + ++ Sbjct: 766 LGITRDAAKLYID-----------------------------------------RYFARY 784 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V++ + ++ + + R+ L LP Sbjct: 785 PGVAQYMEDTRSVAKEK-GYVETVFGRR-----------------LWLP----------- 815 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 + N RQ +Q + D++ M+ K +++ V Sbjct: 816 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDKLASRMIMQV 869 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E PD + L +M +PL AE Sbjct: 870 HDELVLEVPDGELSLVREKLPEMMCGVAK--LKVPLVAE 906 >gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] Length = 936 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 108/637 (16%), Positives = 192/637 (30%), Gaps = 153/637 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115 LK LE+ + + ++R V N I + + T++ + + A Sbjct: 415 LKPWLEDGRRHKLGQHIKYDRHV---FANHGIEVQGYVHDTMLQSYVLEVHKPHNLGSLA 471 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +K ++L + P + Y D +T + + L Sbjct: 472 ERHTGRKGISYEDLCGKGAHQ----------LPFAQVPVDKAAAYSCEDADLTLNVHQTL 521 Query: 176 EPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P L + L+ I G +D + + +L + +L Sbjct: 522 WPQLQAHDRLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRIEQLQADAYAL 581 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L F + G+ + T T T + VL + P ++ +R Sbjct: 582 A-GQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAENYPLPAKLLEHR- 639 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G + LPR R H Q Sbjct: 640 ------------------------------GLIKLKGTYTDKLTQLALPRTGRVHTHYAQ 669 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I VR +A G + AD + IE R++A ++ +Q Sbjct: 670 AVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGCVIASADYSQIELRIMAHLSDDQ 729 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF G D++ T A F VA QV+ +QR KV+ L Y G+ +A G Sbjct: 730 ALLHAFHAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMGSF---GLAKNLG 786 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L A + + + A + ++ T R R Sbjct: 787 LENKAAAAYIDRYFQRYP------GVKQYMDQTRAAAKSNGYVETVFGR-----RLYLPE 835 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ P+G R G Sbjct: 836 INS-------------------------------------------PNG----PRRSGAE 848 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 RS +N Q + D++ M+ K +++ VHD Sbjct: 849 RSAINAPM------------------QGTAADLIKMAMVAVQKELDAQQPAIRMIMQVHD 890 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E P ++ + + LM + +PL AE Sbjct: 891 ELVFELPGNAVDWLRTHVPRLMAEVAT--LKVPLLAE 925 >gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510] gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510] Length = 972 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 112/641 (17%), Positives = 195/641 (30%), Gaps = 156/641 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 +LK+ LE+ V + HN F+ F + + +L + Sbjct: 449 ILKDVLEDPSVLKIGHNFKFD----HQLFGRNGITVSPVDDSMLISYVLEGGSHG----- 499 Query: 116 LKLSSQKMEEGKEL-IARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFK 173 M+E EL +A C +N+ R Y D +T ++ Sbjct: 500 -----HGMDELAELHLAYTPIPFKEVCGTGKNQITFDRVPLDKALAYAAEDADITLRLWT 554 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P ++ L + + G +D L+Q + V ++++E+ Sbjct: 555 LLKPRLVDSRMVTVYETLDRPLVPVVANMEREGVRIDQQALARLSQDLSVRLAEIEKEVH 614 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278 +L G + ++L LF L +T T VL + A +V + Sbjct: 615 ALA-GQSFNIGSPKQLGEILFDTLKLGTGKKGKTGAYSTDSSVLEELAEQGHTIAQRVLD 673 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + + P R H Sbjct: 674 WRQLA-------------------------------KLKSTYTDALQEKISPVTGRVHTA 702 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 T+ ++DP+ I +R +AS G KL+ D + IE R++A MA Sbjct: 703 FALAATNTGRLSSTDPNLQNIPVRTEEGRKIRRAFVASPGHKLLSVDYSQIELRLVAEMA 762 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 Q AF G D++ T A+ F + AQ+T D R K + + Y + Sbjct: 763 DIQALKDAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYGISGF---GLGR 819 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ FI T ER + Sbjct: 820 QLGIAPGEANA---------------------------------FIKTYLERFHEL---- 842 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++W E +AF + + R+ + R Sbjct: 843 -----KVWMEATKAFARQHGYVATLFGRRCYMPGIQ----------------DKNAARRA 881 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLT 627 R +N +Q + DI+ M + A + ++L Sbjct: 882 FAERQAINAP------------------IQGTAADIMKRAMNRMPDALAAAGSNARMLLQ 923 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 VHDE++ E P+ + +A+ + +M G+PL AE Sbjct: 924 VHDELLFEVPEAEVDDAARIVREVMEGAAH--LGVPLVAEA 962 >gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] Length = 934 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 97/568 (17%), Positives = 170/568 (29%), Gaps = 85/568 (14%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F PV+L D L L Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGVPVQL-DRTQALA---QLAPLLT 416 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V + + ++ V++ + + + +L + + Sbjct: 417 DPAVRKLGQHGKYDLHVMRRH---GVELAGYADDTLLESFVLNSGS----------ARHD 463 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 M+ + + K E + P + + Y D +T + + L P + Sbjct: 464 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLA 523 Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G CVD A + Q+ L G Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQRADLSKRMLAAQQKATELA-GR 582 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 583 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 630 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L++ G ++ P P+ R H Q Sbjct: 631 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 671 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 672 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVG 731 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE+G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 732 AFESGADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAF---GLARQLGIGRG 788 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 789 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 841 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL 548 +A G A KR V + Sbjct: 842 RAGAERAAINAPMQGTAADIIKRAMVKV 869 >gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] Length = 946 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 104/690 (15%), Positives = 207/690 (30%), Gaps = 162/690 (23%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE----ALENT 64 E+ D + A + ++ A F D + Q + + A E + Sbjct: 374 ESFC-FDTETTSLN--ALEAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQPAFEKS 430 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKM 123 +T V N ++ VLK + I + +LA P A + Sbjct: 431 SITKVGQNLKYDLLVLKKY---NFAIAGPLFDTMLAHYLLEPEMRHGMDTLAEVYLNYTP 487 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----- 178 ++LI + KG + D EY D +T +++K PL Sbjct: 488 VSIEQLIGK--KGAKQGTMRD-------VEIEAIKEYAAEDADITFQLYKFFSPLVKDQN 538 Query: 179 -----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E L + + G +D + ++ E T +++E+ G+ + Sbjct: 539 LNPLFNEVEMPLSEVLADMELEGVKIDTQALSEFSSLLQTEITAVEKEIYEHA-GVQFNI 597 Query: 234 RCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L LF + L T+T T + VL+ P + Sbjct: 598 SSPKQLGEILFDKLKLDPNAKKTKTGQYATGEDVLTKLDSDHPILANIL----------- 646 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + + P L + R H +Q + Sbjct: 647 --------------------DYREFQKLKSTYVDALPLL-LGKDGRVHTSFNQAVAATGR 685 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +++P+ I +R +A + ++ AD + IE R++A + ++ L AF Sbjct: 686 LSSTNPNLQNIPIRTDRGKEIRRAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAF 745 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ TT ++ F V VT D R K++ + Y A + + Sbjct: 746 RKGVDIHSTTASKVFKVPIEDVTADMRRKAKMVNFGIIYGISAFGLSQ---RLSIPRKEA 802 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A ++ V + Sbjct: 803 AEIITAYFTE-----------------------------------------FPAVKAYMD 821 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + + +E + I+ R+R L + R++ R R+ +N Sbjct: 822 ACVNSARE-VEYVETILGRRR---------------FLRDINSRNMTMRGF-AERNAINA 864 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 +Q + D++ M+ +VL VHDE++ + Sbjct: 865 P------------------IQGSAADMIKVAMIRIHDWMKKENLKSKMVLQVHDELLFDA 906 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 + + + + M A +P++ Sbjct: 907 HKDEIDLLKTQVEIFMKEAI--ALDVPMEV 934 >gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM] gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM] Length = 933 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 96/653 (14%), Positives = 180/653 (27%), Gaps = 155/653 (23%) Query: 46 DCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D + + +P+ L+ LE+ V + N ++ + L + I T++++ Sbjct: 395 DALAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDAKI---FAGLGLTIAPIDDTMLMS 451 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + E + L +T + +Y Sbjct: 452 YALN--------SGIHNHGMDALSE-RYLAHNPIPIKTLLGTGKSAVTFDKVPIDEAVKY 502 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++ +P + E+ L + + G VD + ++ Sbjct: 503 AAEDADITLRLWHMFKPQLHQKQVTTVYETLERPLVPVLARMERHGILVDRDVLSRMSNA 562 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ L G + ++L LF E L +T T VL Sbjct: 563 FAQKMGGLEAEIHELA-GRSFNVGSPKQLGEILFDEMALEGGKKGKTGAYATGADVLEDL 621 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +V + R S+ Sbjct: 622 ATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQD 650 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H Q ++DP+ I +R +A GK+LV D Sbjct: 651 HIDPNTGRVHTSYVQTGASTGRLASTDPNLQNIPVRSEEGRRIREAFVADAGKRLVSLDY 710 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA +AG +AF G D++ T + F V ++T D R K + + Y Sbjct: 711 SQIELRILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIY 770 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + +A+ F E P Sbjct: 771 GISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP----------- 800 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 R E + + + R+ + Sbjct: 801 -------GIRAYMDETVEF--------AKAHGYVQTLFGRR-----------------IH 828 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617 P + R R+ +N +Q + DI+ M+ Sbjct: 829 TPEIAAKGPRAGFAKRAAINAP------------------IQGTAADIIRRAMIRMPEAI 870 Query: 618 TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E + + + +M A +PL + Sbjct: 871 ADLPCKMLLQVHDELLFEAEEDAVDAVITAAREVMEGAADPAVHLDVPLTVDA 923 >gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 933 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 103/595 (17%), Positives = 179/595 (30%), Gaps = 94/595 (15%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F PV+L D L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTQALA---QLVPLLT 415 Query: 63 NTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + V + + ++ V++ + D + ++ AR + A + +G Sbjct: 416 DPAVRKLGQHGKYDLHVMRRHGVELAGYAHDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +G + I P + + Y D +T + L Sbjct: 476 VKYEDVCGKGAKQI-----------------PFAQISLEDATRYAAEDADITLRLHHVLG 518 Query: 177 PLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P E L + I G CVD A + + Q+ L Sbjct: 519 PKLAAEPGLERVYREIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATEL 578 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF E L +T + L + Sbjct: 579 A-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP-------- 629 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R L++ G ++ P P+ R H Q Sbjct: 630 -----------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQ 666 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ Sbjct: 667 AGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDP 726 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AFE+G D++ T A F V+ D+R K + L Y A +A G Sbjct: 727 GLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLG 783 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + R E + A + ++ T R + ++ Sbjct: 784 IGRGEAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAG 836 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A KR V + ++ ++L LV+ Sbjct: 837 SQGQRAGAERAAINAPMQGTAADIIKRAMVSVDGWIAGHAQRAKMILQVHDELVF 891 >gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2] gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2] Length = 893 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 102/609 (16%), Positives = 188/609 (30%), Gaps = 100/609 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQ 55 ID ET S + + P E + + V+ + Sbjct: 322 IDLETSS------------LDPFDCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVL-K 368 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 LKE LE+ IV N F+ VL +P ++A P Sbjct: 369 KLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPP---HFDTMIAAYLLEPNEKKFNLDD 425 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK KM +EL++ F Y D +T ++K Sbjct: 426 LALKFLGYKMTSYQELMS-FSSPLF-------GFSFADVPVEKAANYSCEDADITYRLYK 477 Query: 174 RLE-PLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L L E L + + G VD L++ + +L +E+ Sbjct: 478 ILSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIY 537 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFN 278 + G + +++ LF + G+ T T VL + Sbjct: 538 RIA-GEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE 596 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + P P+ R H Sbjct: 597 -------------------------------YRKIQKLKSTYIDALPKMVNPKTGRIHAS 625 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392 +Q T +SDP+ + +R ++ +V AD + IE R+LA + Sbjct: 626 FNQTGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHL 685 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ LKAFE G D++ T +R FNV P +VT++ R GK++ ++ Y Sbjct: 686 SGDENLLKAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV-- 743 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + ++ + + ++ + + E G + + R Sbjct: 744 -RLGVPVKEAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARD 800 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571 ++++ + T G A K + + K++ +++ LV+ Sbjct: 801 RNTQAEG-----ERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFE 855 Query: 572 DVGNNRSYL 580 + L Sbjct: 856 VPDEEKDAL 864 >gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1] gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1] Length = 908 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 113/669 (16%), Positives = 194/669 (28%), Gaps = 150/669 (22%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----QVLKEALENT 64 D + + A ++ +F + H +P LK LE+ Sbjct: 336 DTETTSLDQMA--AKLVGMSFAIVEGEAAYLPLAHIYPAAPAQLPLAEVLAKLKPWLESD 393 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + N ++ VL L + TL+ + A + Sbjct: 394 AHPKLGQNLKYDAHVLANH-GLRLG-GIAHDTLLQSYVLESDRPHDMDSLAKRHLGIDTI 451 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179 + C + +D + A EY D +T + ++L P Sbjct: 452 PYTAV----CGKGVGQICFD------QVAIERATEYAAEDADITLRLHRKLWPQLEAAPA 501 Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E + + G +D L ++ + L++E L G + Sbjct: 502 LAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQSEELGRRLMTLEREAHDLA-GQPFNL 560 Query: 234 RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + GL + T T T + VL+ P + +R Sbjct: 561 GSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLAQLADDYPLPKLLLEHR--------- 611 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P + R H Q + Sbjct: 612 ----------------------GLSKLKSTYTDKLPRMVNAKTGRVHTSFSQAVAVTGRL 649 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +S+P+ I +R+ IA +V AD + IE R++A ++ + L++F Sbjct: 650 ASSEPNLQNIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAE 709 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F + P +VT +QR KV+ L Y A +A GL A Sbjct: 710 GEDVHRATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSA---HGLAKNLGLERAAAAA 766 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + A E A ++ T R + + + + Sbjct: 767 YIDRYFARYP------GVAAYMERTRSEARARGYVETVYGR-RLYLPEIRASQAGRRQAA 819 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A G A K+ + T Sbjct: 820 ERAAINAPMQGTAADLIKKAMI------------------------------------AT 843 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643 R+ LA+ + +VL VHDE+V E P + E Sbjct: 844 RRW----------------------LADAALR-----SRLVLQVHDELVLEVPRDELETV 876 Query: 644 ASMLYHLMT 652 + L LMT Sbjct: 877 RATLPGLMT 885 >gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] Length = 948 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 98/583 (16%), Positives = 192/583 (32%), Gaps = 83/583 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVA 70 D + ++ AF ++ + Q L EAL E ++ + Sbjct: 380 DTETTDLDP--LQAELVGIAFSWEKTKGFYVPFPSEKEEVQKLIEALRPFFEAEEIEKIG 437 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VL D+ + + ++A P A + +EL Sbjct: 438 QNLKYDIKVLAKY---DVEVKGKLFDTMIAHYLINPDMRHNMDVLAETYLNYTPVSIEEL 494 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I + K + EY D VT ++ + + Sbjct: 495 IGKKGKNQKS---------MADVPVDQQTEYAVEDADVTLQLKEHFQKELGEANTQKLFD 545 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +D +L++ ++ + L++ + G + ++L Sbjct: 546 EIEIPLVQVLADMELEGINLDQEFLGSLSEALNNDIASLEKSIYEEA-GEEFNIGSPKQL 604 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T T T + VLS V Sbjct: 605 GEILFDKLKLVDKPKKTRTGQYSTAEDVLSYLAPDHEIVQHVL----------------- 647 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + G S+ P Q + R H + Q + +++P Sbjct: 648 --------------DYRGLSKLKSTYVDALPAQVNAKTGRVHTDYMQTVAATGRLSSNNP 693 Query: 355 DPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR + E L+ AD + IE R++A ++ E+ +KAF+ GED+ Sbjct: 694 NLQNIPIRTERGRQVRKAFVPRNEDYVLLAADYSQIELRIIAALSQEETMMKAFQEGEDI 753 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T A+ FNV +VT++QR+ K + + Y A +++ T L + L+ T Sbjct: 754 HASTAAKVFNVPIDEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLTRSESKELIDT 810 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + N+ + E+ +G ++ + +S + + + Sbjct: 811 YY--KTYPKLRNYMSEQVDFARENGYVSTVLGR-----RRYLKDINSSNAVVRGAAERNA 863 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570 G A K + + + KDK ++L LV+ Sbjct: 864 VNAPIQGSAADIIKIAMIKIHHKLKDKGLRTKMLLQVHDELVF 906 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 9/77 (11%) Query: 597 LTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYH 649 +Q + DI+ M+ D ++L VHDE+V + ++ E ++ Sbjct: 863 AVNAPIQGSAADIIKIAMIKIHHKLKDKGLRTKMLLQVHDELVFDVYKSELEEVQELIKS 922 Query: 650 LMTSNPSWAKGLPLKAE 666 M ++ +PL E Sbjct: 923 EMEH--AFKLDVPLDVE 937 >gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] Length = 942 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 102/606 (16%), Positives = 208/606 (34%), Gaps = 91/606 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALE 62 D ET S L D ++ AF ++ H D + + L+ E Sbjct: 374 DTETTS---LKTL-------DAELVGIAFSWESHKGFYVAFPEDQNEAQELVEKLRPFFE 423 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 +T++ V N ++ VL N + + + +LA P A + Sbjct: 424 STEIEKVGQNLKYDIKVLA---NYKLKVKGPLFDTMLAHYIINPDMRHNMNILAETYLNY 480 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177 + ++LI + KG+ + + + +Y D +T ++ E Sbjct: 481 SPQPIEDLIGK--KGKRQKTMRT-------VSLEDQTQYAVEDADITFQLKTYFEKELKE 531 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + + G +D + +++ +D + +L++ + G Sbjct: 532 ASNEPLFKDMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERLEKSVYVEAEG-EF 590 Query: 232 SSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF + + + +T + VLS+ K +V R Sbjct: 591 NIGSPKQLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNYAKDHKIVREVLEWRQL---- 646 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P Q PR R H E Q + Sbjct: 647 ---------------------------SKLKSTYVDALPKQIHPRTKRVHTEFMQTVAAT 679 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I VR + E L+ AD + IE R++A ++ E+ + Sbjct: 680 GRLSSNNPNLQNIPIRTERGREVRKAFVPRDENYVLLAADYSQIELRIIAALSQEKTMMN 739 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ GED++ +T AR F V +VT+ QR+ K + + Y A +++ T L N Sbjct: 740 AFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTVNFGIIYGVSAF---GLSNQTDLTRN 796 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L++T + + ++ E EH +G ++ + +++ + Sbjct: 797 ESKELIETYY--KTYPKLRDYMDEQVEFAKEHGYVKTVMGR-----RRYLKDINAKNHIV 849 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSY 579 + + G A K + + +++N ++L L++ + Sbjct: 850 RSAAERNAVNAPIQGSAADIIKVAMINIYDALEEQNFKSKMLLQVHDELIFDAHKDEIDA 909 Query: 580 LNTTTR 585 L + Sbjct: 910 LTALVK 915 >gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145] gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145] Length = 931 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 93/583 (15%), Positives = 193/583 (33%), Gaps = 81/583 (13%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTI 68 +D G+ A D ++ +F + +VL+ LEN ++ Sbjct: 361 SMDTETTGLD--ANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVLRPLLENENIRK 418 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGK 127 + N ++ +LK + +++ +LA P + Sbjct: 419 IGQNLKYDYIILK-WYGIEL--KGEFFDTMLAHYLLDPDTRHNMDVLSENYLGYTPISIT 475 Query: 128 ELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS------- 179 ELI + +N+ N R+ +Y D VT ++ + EP+ Sbjct: 476 ELIGKG-----------KNQLNMRDIDVAKVTDYAAEDADVTLQLQQVFEPMLIEAQAEK 524 Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + + G +DV ++ + + KL+ + G + Sbjct: 525 LAKEVENPLINVLGDMEKEGVKIDVEQLIRFSRDLQDDIGKLENTIYHKA-GHRFNIASP 583 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L LF + +L P+A + + + +L L + Sbjct: 584 KQLGEILFDKL--------------------QLDPKAKKTKTGQYQTGEDVLLALANKSD 623 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + L F + P + R H +Q + +++P+ Sbjct: 624 IVKD------ILDFRQLQKLKSTYVDALPLMINKKTGRVHTSYNQAVAATGRLSSNNPNL 677 Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I VR I E L+ AD + IE R++A ++ ++ + AF G D++ Sbjct: 678 QNIPIRTEKGREVRKAFIPRDENHILLSADYSQIELRIIAEISKDENMMDAFSKGLDIHT 737 Query: 411 TTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A+ + VA VT DQR K + + Y A + G+ A +++ Sbjct: 738 ATAAKVYGVANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQ---NLGIPRKEAAEIIE-- 792 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + E+++ +N+ E+ + +G ++ R +S + + + Sbjct: 793 NYFEQYKGIKNYMSDTMNFARENGYVETIMGR-----RRYLRDINSANATVRGFAERNAI 847 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 G A + + + K+ + L S ++ D Sbjct: 848 NAPIQGSAA-----DMIKIAMLNIHKDLIDRKLQSKMTMQVHD 885 >gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] Length = 976 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 110/694 (15%), Positives = 199/694 (28%), Gaps = 168/694 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMPQ---- 55 +D ET S + D ++ + + L Q Sbjct: 384 SLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLSIE 433 Query: 56 ----VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111 L+ +E+ NS F+R + FN + + +LA Sbjct: 434 YVFSKLRNWIEDPKKEKALQNSKFDRQI---FFNHGLILKGVTFDTLLADYLLN------ 484 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E + F K + + +NK YC DV +T +I Sbjct: 485 -----NQEKHGLSEISFRLFGF-KPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKI 538 Query: 172 FKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 K + E L + + G +D+ L++ + ++ Sbjct: 539 VKIFKERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIE 598 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274 ++ L + ++L LF + L + +T T VL Sbjct: 599 SKVYELA-EENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQ 657 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ P + R Sbjct: 658 HLIKHR-------------------------------TLSKLLSTYIDALPNLINEKTGR 686 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q T +S+P+ I S +R + + KL+ AD + IE R+L Sbjct: 687 VHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNCKLLSADYSQIELRIL 746 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A E+ + AF +D++ T F Q++ D+R +GK + + Y G + Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFGVIYGMG---IK 801 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 K A +TG++ + E + F E A+ ++ T R ++ Sbjct: 802 KFARSTGVSTPEAKEFL--IKYKERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE- 854 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 K DKN L ++ Sbjct: 855 -----------------------------------------FKFDKNGLGRLIGKDPY-- 871 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAG----- 621 + R L +Q S DI+ M+ K Sbjct: 872 -----------EIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNV 920 Query: 622 -YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTS 653 ++L VHDE++ E D+ E ++ M Sbjct: 921 PAKMLLQVHDELLFEVEQDSLEITTKLVKKTMED 954 >gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319] gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319] Length = 920 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 103/615 (16%), Positives = 192/615 (31%), Gaps = 102/615 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 TL +D ET + D A ++ +F ++ +P+ +EAL Sbjct: 348 KTLSLDTET-TSTD---------AISAELVGLSFSVEEKEAYYV------PIPENREEAL 391 Query: 62 ----------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK 110 EN + V N ++ VL N + + + ++A P Sbjct: 392 KRVAIFKPVYENESILKVGQNIKYDYEVLS---NYGVKLKGAMFDTMIAHYLIQPELRHN 448 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A L + +EL+ KG+ + + D + + EY D +T Sbjct: 449 MDYMAETLLGYQTIHIEELLG--SKGKKQKNMRDLSPTD-------IYEYAAEDADITLR 499 Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P + E L + + G +D ++I + + Sbjct: 500 LKNVLAPKLKELNVEELFWSIEMPLVRVLADMELTGVRIDTEALKETSKIFTERMRQYEV 559 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQ 275 ++ G + +++ LF + L T+T T + VL S + P Sbjct: 560 KIFKEA-GEEFNISSPKQVGDILFGKMQILDKPKKTKTGQYVTSEEVLQSIESKHPIV-- 616 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R L + G + P R Sbjct: 617 -----------------------------RNILNYRGMKKLLSTYVEALPKLINSRTGHI 647 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H +Q +T +SDP+ I +R C I EG AD + IE R++A Sbjct: 648 HTSFNQALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEEGCMFFSADYSQIELRIMA 707 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++AF G D++ T A+ ++ A VT QR K + Y Sbjct: 708 HLSEDDNMMEAFREGYDIHRATAAKIWHEALDDVTDAQRKKAKQANFGIIYGITTF---G 764 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A + N L++ ++ + E+ E A + T R ++ Sbjct: 765 LAQRMEIPNNEARALIQ------DYFRTFPKVQAYMEHAKELARSKGYAETLFHR-RRYL 817 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLV 569 +SR + + G K V + K++ ++L L Sbjct: 818 PNINSRNGTIRGFDERNAINAPIQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDELN 877 Query: 570 YRDVGNNRSYLNTTT 584 + + R + Sbjct: 878 FSVYPDEREKVEKIV 892 >gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10] gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10] Length = 896 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 108/676 (15%), Positives = 211/676 (31%), Gaps = 167/676 (24%) Query: 24 YAEDVCVILFAFGFDDH--PVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERT 78 Y +D+C+ F ++ P + + L+E E+ D+ H + Sbjct: 344 YLDDLCI----FACNEEYAPANIIFSEKLTC-ETVVNELREIFESKDIEKYGH----DLK 394 Query: 79 VLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137 L + I + I +A P+ +S ++ K+ I Sbjct: 395 NLYKYLKSHGIELENVIFDTFIAAYILEPTR-----STYTISELSEDKLKQSI------T 443 Query: 138 THECLYDRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPLS----------SKEQELW 186 E LYD++ + + E C V + ++L P+ E L Sbjct: 444 PVEILYDKHGKRLEQGQDVSSSEVCAAAVNAIYGLTQKLRPIIRDNGQDELYYKIELPLV 503 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + RG+ VDV ++ +D L+ E+ + G + ++L LF + Sbjct: 504 EVLANMELRGFKVDVENLKAYSKELDSRLVILENEIY-MQAGETFNINSPKQLGVILFEK 562 Query: 247 TGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 GL + T+T ++L ++ R Sbjct: 563 LGLPVGKKTKTGYSTSAEVLEQLSYKHEIVERILEYRQLM-------------------- 602 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 + L + + H +Q +T +++P+ I Sbjct: 603 -----------KLKSTYADGL-LSVLEQDGKIHSNFNQTVTATGRISSTEPNLQNIPVKL 650 Query: 361 --SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R I + L+ AD + IE RVLA + G+ ++AF ED++ TT ++ F Sbjct: 651 EMGRKIRKVFIPTNSDYVLLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVF 710 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + P +V+ R+ K + + Y G + G+ + ++ D Sbjct: 711 GIPPEEVSSLMRSRAKAVNFGIVYGIGDFSLS---KDIGVTKKEARKYID------DYLD 761 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + + E E F+ Sbjct: 762 KYSKVKEYMSDTVEKGKEFGFV-------------------------------------T 784 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + +RR +P + K N + R +NT Sbjct: 785 TLYNRRRYLPEL---KSSNFNMRSF------------GERVAMNTP-------------- 815 Query: 598 TENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHL 650 +Q + DI+ M+ K ++L VHDE++ ET ++ E + +L Sbjct: 816 ----IQGSAADIIKISMVKVYTELKKRKLKSKLILQVHDELIVETEKSELEEVSKLLKDC 871 Query: 651 MTSNPSWAKGLPLKAE 666 M + +PL + Sbjct: 872 MENAVQ--LKVPLTVD 885 >gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] Length = 924 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 112/655 (17%), Positives = 207/655 (31%), Gaps = 151/655 (23%) Query: 46 DCVHDPVMPQVLKEA---------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 D + P + E+ LEN + V N ++ V + P + Sbjct: 378 DLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRYGVRVAPYDDTM-- 435 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKEL-IARFCKGETHECLYDRNKPNHRE-AW 154 L + +A L + M+E E + C C +++ E Sbjct: 436 ------------LISYVQAAGLHNHGMDELAERHLGHTCISFKEVCGTGKSQKRFSEIDL 483 Query: 155 RLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALA 204 + EY D +T +++ L+ + E+ L + + G VDVA Sbjct: 484 KTATEYAAEDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQL 543 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQ 260 L+ + + ++ L G + +++ LF E GL T++ T Sbjct: 544 SRLSSDFAQKMAEAEETAHKLA-GTKFNLGSPKQIGEILFGEMGLPGGKKTKSGAWSTDA 602 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + + S+ + L +A+N Sbjct: 603 AVLDELAAQGHDLPKALLTWRQFSKLKSTYSDALKDAIN--------------------- 641 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375 P R H T +S+P+ I +R A G Sbjct: 642 ---------PNTGRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRKIREAFTAEPGHV 692 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 +V AD + IE R+LA +A + +AF G+D++ T + F V + R K + Sbjct: 693 IVAADYSQIELRLLAHIADVEALKQAFREGQDIHALTASEMFGVPLENMDPTTRRNAKAI 752 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y A +A+ G+ + + + Sbjct: 753 NFGIIYGISAF---GLANNLGIGRDEAKSYIDSYF------------------------- 784 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 +K + + + + + + + I +R +P + KDK Sbjct: 785 ----------------KKFPGIKDYMDAMKDEAKA--KGCVSTIFGRRIHLPGI---KDK 823 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 N PS R R +N + G + I +A+ R G + Sbjct: 824 N------PSVRQFT------ERQAINAPIQ---------GAAADIIRRAMVR---MPGAL 859 Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL--PLKAEG 667 + ++L VHDE+V E P+++ L +M++ A+ L PL+ E Sbjct: 860 SDAGLKTRMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPAQNLSVPLEVEA 914 >gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002] gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002] Length = 913 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 118/655 (18%), Positives = 206/655 (31%), Gaps = 156/655 (23%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 D PV+ D V+ LK LE+ D V + ++ VL + TL+ Sbjct: 377 DAPVQ---LPRDEVL-AKLKPWLESADHKKVGQHLKYDEQVLANYGIEMRGVE--HDTLL 430 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + AL+ K + +++ + + A Sbjct: 431 ESYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAQQ----------IGFDEVALDKAA 480 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207 EY D +T + + L P + E L ++ + I G +D Sbjct: 481 EYAAEDADITLRLHQALYPQIAVENSLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQ 540 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263 + + +L+ L G + +++ F + L + T + T + VL Sbjct: 541 SGEIATRLIELEGSAYELAGG-EFNLGSPKQIGQIFFEKLELPVIKKTPSGAPSTDEEVL 599 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + +R G S+ Sbjct: 600 QKLAEDYPLPKILLEHR-------------------------------GLSKLKSTYTDK 628 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P PR R H Q + ++DP+ I +R IA G KLV Sbjct: 629 LPRMVNPRTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ ++AF GED++ T + FNV P +V+ DQR + KV+ Sbjct: 689 ADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINFG 748 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y A +AS G+ + Sbjct: 749 LIYGMSAF---GLASNLGITRD-------------------------------------- 767 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 A + + ++ V+ +E + + + + R+ Sbjct: 768 ---AAKMYIDRYFARYPGVARYMDETRLSAK-AKGYVETVFGRR---------------- 807 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L LP + N RQ +Q + D++ M+ Sbjct: 808 -LWLP------------EINGGNGPRRQAAERAA-----INAPMQGTAADLIKMSMIAVQ 849 Query: 619 ------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 K G +++ VHDE++ E PD + L LM A +PL AE Sbjct: 850 NWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVA--ALKVPLVAE 902 >gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] Length = 1041 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 107/624 (17%), Positives = 185/624 (29%), Gaps = 151/624 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113 LK E+ + HN+ ++ V+ I + +LA P L Sbjct: 512 QLKPIFEDASIGKYMHNAKYDIAVM---LRYGIQVEGLSFDSMLAAYLIEPGRRGLGLKE 568 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 +A + S M ELI K + + R +Y D +T + Sbjct: 569 QAFQRLSILMTPITELIGSGSKIISMAQVPIR----------RAADYAGSDADMTLRLVV 618 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L K E L + + G +D H + ++ + K +Q + Sbjct: 619 PLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGEQLNEQLRKAEQTIY 678 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280 G + ++L LF+E L T+T V+ + + + P + R Sbjct: 679 D-AVGHHFNVNSPKQLGEVLFVELKLPAGKKTKTGYSVSADVIENLRGMHPAIDSLLEYR 737 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ + R + + Sbjct: 738 QL-------------------------------SKLKSTYIDGLQTLMDRQTGRVYTSFN 766 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q I +S+P+ I + +R IA L+ AD + IE R+LA + E Sbjct: 767 QTIASSGRLSSSNPNLQNIPVRTELGRQIRRAFIADPSYVLLTADYSQIELRILANITNE 826 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF GED++ T A F+V +VT+DQR + K + A+ Y A + T Sbjct: 827 PRLVEAFNQGEDIHTITAASLFSVPVEEVTRDQRRLAKTVVYAVLYGQSAYGLSQ---VT 883 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A +K + H Sbjct: 884 GMRPGDAADFIK--------------------------------------------RYHE 899 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + EQ G R+ +P R L + + Sbjct: 900 TFPNIKVYVESTLEQARRQGYVNTCFGRK---------------RFIPDMRVLSHVE--- 941 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVH 629 RQ +Q + D++ M+ A ++L VH Sbjct: 942 ---------RQALEREA-----VNMPIQGSNADLIKVAMLRLQHAFLQNGMKTRMILQVH 987 Query: 630 DEIVCETPDTDEFNASMLYH-LMT 652 DE+V E P + A + +M Sbjct: 988 DELVFEVPVEELERAKRIVKAVME 1011 >gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] Length = 911 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 93/646 (14%), Positives = 189/646 (29%), Gaps = 158/646 (24%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLAR 101 D + + L + V I+ HN ++ VL+ D + W+ Sbjct: 384 FDDDAVRERLVRLTSSPSVRIIGHNFKYDYKVLRRWGVVTKNLAFDTMVAAWLLDTTANS 443 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 P A +G K K+++ ++ + Y Sbjct: 444 YGMDPLAASLLG-------YKTISFKDVVP-------------KDGLFQDISVETATRYA 483 Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D +T ++ + E L + + G + + + Sbjct: 484 AEDADITFRFYELFRRQLKERGLEKLFFELEMPLVPILAEMECAGITLLSDRLEAYGREL 543 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + ++ ++ G + ++L+ LF E L T+T +S ++L Sbjct: 544 EKDLGTIEDDIWQ-ACGHSFNINSTKQLQQVLFEERKLTPIKKTKTGYSTDISVLEELAR 602 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + L+ ++ P P Sbjct: 603 EDVVPLL----------------------------VLRHRSLAKLKSTYVDALPKLVNPE 634 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 R H +L Q T + DP+ I +RS + +EG + AD + IE Sbjct: 635 TGRIHTQLIQTGTATGRLSSKDPNLQNIPIRDEDGRRIRSAFVPAEGNLFISADYSQIEL 694 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 VLA ++ + +AF +G D++ T + F+V+ A V+ +QR I K + + Y A Sbjct: 695 VVLAHLSEDPELSQAFRSGGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMSAF 754 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +++ G++ + + R+ Sbjct: 755 ---RLSRELGISRSRADSFISAYFRRYF------------------------------RI 781 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + R+ + + + R +P + + Sbjct: 782 QSFMRKVVQETEQ-------------SGVSKTLLGRERSIPAINSRNKT----------- 817 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKA 620 G R +NT +Q + DI+ M+ + Sbjct: 818 ----EKAGAERIAVNTP------------------IQGTAADIVKLAMLAVSRRMASEEL 855 Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665 +VL +HDE++ E P + +L M S +PL+ Sbjct: 856 KSKMVLQIHDELLFEVPFDEADRMEGLLKEEMESAVK--LSVPLRV 899 >gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] Length = 882 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 94/657 (14%), Positives = 181/657 (27%), Gaps = 168/657 (25%) Query: 36 GFDDHPVELWDCVHDPVMPQ-VLKEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 + + L P + +AL EN+++ H++ +L I + Sbjct: 355 AVPEQDIYLLPLQDTDPYPALTVLQALCENSEIKKYFHDAKSALWMLHHH---GIELKSL 411 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++A P+A L L + Sbjct: 412 AFDTMVAAYLLNPTASGYDLIDLALEHLGI------------VLPVNG------------ 447 Query: 154 WRLFGEYCKGDVTVTR--EIFKRLEPLSSK------EQELWYLDQTINDRGYCVDVALAH 205 K D + E+ K+L E L + + G VD Sbjct: 448 --EVSLAAKADAILKLAGELVKKLHLQEEDRLYFEVELPLVQVLADMEMAGVTVDKQGLK 505 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRV 262 ++ + L + +L G + ++L LF + L + T+T V Sbjct: 506 EMSAELHDMIESLAHRIHTLA-GEDFNINSPKQLGHILFEKLKLPVYKKTKTGYSTDAEV 564 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + + R A + Sbjct: 565 LEKLAEEHEIVALILEYRQLA-------------------------------KLKSTYTD 593 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKL 376 P+ R H Q +T +++P+ I +R + +G + Sbjct: 594 GLAALVDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVFVPRQKGNLI 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RVLA M+ + L+AF G+D++ T A F V +VT D R+ K + Sbjct: 654 LTADYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y +A ++ + Sbjct: 714 FGIVYGISDF---GLARDLKVSRREAKSYID----------------------------- 741 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +R + + + + ++ G RR Sbjct: 742 ---------------NYFARCPGVKDYIDRVIKEAKHTGYVTTLLNRRRYLPDLFS---- 782 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 P+ + + R+ +NT +Q + DI+ M+ Sbjct: 783 ------PNYNARSF----GERAAMNTP------------------IQGSAADIIKLAMVR 814 Query: 617 ATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 + +VL VHDE++ + P+++ L M + +PL + Sbjct: 815 VARELRERNLQAKLVLQVHDELIFDVPESEVNELVDLVRDCMENALP--LDVPLVVD 869 >gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila] Length = 893 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 99/601 (16%), Positives = 185/601 (30%), Gaps = 92/601 (15%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQVLKEALEN 63 +DL + + P E + + V+ + LKE LE+ Sbjct: 322 VDLETSSLDP----FDCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVL-KKLKEILED 376 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQ 121 IV N F+ VL +P ++A P ALK Sbjct: 377 PGAKIVGQNLKFDYKVLMVKGVEPVPP---HFDTMIAAYLIEPNEKKFNLDDLALKFLGY 433 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLSS 180 KM +EL++ F Y D +T ++K L L Sbjct: 434 KMTSYQELMS-FSSPLF-------GFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHE 485 Query: 181 K---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + + G VD L++ + +L +E+ + G Sbjct: 486 ADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIA-GEPF 544 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF + G+ T T VL + Sbjct: 545 NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE-------- 596 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + P P+ R H +Q T Sbjct: 597 -----------------------YRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTAT 633 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ + +R ++ +V AD + IE R+LA ++G++ LK Sbjct: 634 GRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLK 693 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE G D++ T +R FNV P +VT++ R GK++ ++ Y G+ + Sbjct: 694 AFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV---RLGVPVK 750 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ + + ++ + + E G + + R ++++ Sbjct: 751 EAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRRRDIPQLMARDRNTQAEG- 807 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSY 579 + T G A K + + K+ +++ LV+ + Sbjct: 808 ----ERIAINTPIQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPDEEKDA 863 Query: 580 L 580 L Sbjct: 864 L 864 >gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 99/603 (16%), Positives = 198/603 (32%), Gaps = 86/603 (14%) Query: 12 SPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTD 65 S + D G+ ++ AF ++ + + L+ ENT Sbjct: 377 SSVCFDTETTGLDPLV--AELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRPFFENTA 434 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKME 124 + + N ++ VL ++ + + +LA P A + Sbjct: 435 IEKIGQNLKYDIKVLAKY---NVKVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNYTPV 491 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------- 177 ELI + K + + EY D +T ++ + E Sbjct: 492 SITELIGKKGKNQKS---------MRDVSVDDQTEYAVEDADITLQLKQHFEKELDEAGT 542 Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G +DV+ +L+ ++ + +L E+ + G + Sbjct: 543 RKLFDDIEIPLLRVLAAMEVEGINLDVSFLQSLSGDLNADIERLTSEIFAEA-GEEFNIG 601 Query: 235 CLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L T+T T + VLS K +V Sbjct: 602 SPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVL------------ 649 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + G S+ P Q + R H + Q + Sbjct: 650 -------------------DYRGLSKLKSTYVDALPEQV-AQDGRVHTDYMQTVAATGRL 689 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I VR + E L+ AD + IE R++A ++ E+ ++AF Sbjct: 690 SSNNPNLQNIPIRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFT 749 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ +T A+ FNV +VT++QR+ K + + Y A +++ T L+ Sbjct: 750 DGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGEAK 806 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L+ R E A E+ ++ T +R ++ +S + Sbjct: 807 ELIDNYYKSYPK------LRNYMSELVEFARENGYVKTVLDR-RRYLNGINSSNGVVRGA 859 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNT 582 + G A K + + ++ + ++L LV+ + + Sbjct: 860 AERNAVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNDELDAIKE 919 Query: 583 TTR 585 + Sbjct: 920 LIK 922 >gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6] gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6] Length = 917 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 121/701 (17%), Positives = 210/701 (29%), Gaps = 170/701 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCV-ILFAFGFDDHP---VELWDCVHDPVMPQVL---- 57 ID + D A D + L F P L P MP+ L Sbjct: 336 IDAAALTAFDTETT-----ALDPMIARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDE 390 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 K LE+ D V + ++ VL I TL+ + Sbjct: 391 VLARLKPWLESADRKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMD 448 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 AL+ K + +++ + K + + + +T ++ Sbjct: 449 SLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD----------ITLQLH 498 Query: 173 KRLEPLSSKE--QELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + L P ++E E Y D + G +D AL + + +L+ + Sbjct: 499 QALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQ 558 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVF 277 L G + +++ F + L + +T + VL + P + Sbjct: 559 AYELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLL 617 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R G S+ P P R H Sbjct: 618 EHR-------------------------------GLSKLKSTYTDKLPRMVNPATGRVHT 646 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + ++DP+ I +R IAS G ++V AD + IE R++A + Sbjct: 647 NYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHI 706 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ L+AF GED++ T A F V P +V DQR I KV+ L Y A +A Sbjct: 707 SGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLA 763 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 S G+ + + + Sbjct: 764 SNLGITRDAAKLYID-----------------------------------------RYFT 782 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 ++ V++ + A + + + R+ L LP Sbjct: 783 RYPGVAQYMEDTRTAAKDK-GYVETVFGRR-----------------LWLP--------- 815 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626 + N RQ +Q + D++ M+ + +++ Sbjct: 816 ---EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIM 867 Query: 627 TVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E PD + L +M +PL AE Sbjct: 868 QVHDELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAE 906 >gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] Length = 940 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 95/605 (15%), Positives = 188/605 (31%), Gaps = 91/605 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDPVMPQVLKE---ALE 62 D ET ID K G+ + +F ++ + ++L AL+ Sbjct: 372 DTET-DGIDPLKAGL---------VGMSFAVKENEAWYVPVPAAREEADKILAHFSPALQ 421 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 N + N F+ V++ I I + ++A P A Sbjct: 422 NPKSLKIGQNIKFDILVVRKY---GIRIAGPLFDTMIAHYLLNPELRHGMDYLAETYLKY 478 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 K +ELI + L R+ P EY D +T ++ P K Sbjct: 479 KTVRIEELIG----PRERKQLTMRDVPV-----VQVAEYAAEDADITLKLKNYFTPCLEK 529 Query: 182 E----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L Y+ + G +D ++ + KL++E+ L G+ Sbjct: 530 EGLESLFYDIEMPLIYVLAEMEYTGVTLDTVALKQSSEELTTALKKLEKEIYELA-GMKF 588 Query: 232 SSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++ LF + + + +T + +L + P ++ R Sbjct: 589 NINSARQVGEVLFDHLKIEEKARKTKTGSYSTSEEILEKMRSKHPVVGKLLEYR------ 642 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 G + P P + H +Q +T Sbjct: 643 -------------------------GLKKLLSTYIDALPELINPETGKIHTSYNQAVTST 677 Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I + +R A E AD + IE R++A ++ + ++ Sbjct: 678 GRLSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIE 737 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +G D++ T A+ + + +VT D R K + Y +A + Sbjct: 738 AFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVF---GLAERLSIPRA 794 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L++ + + D R + E A E ++ T +R K+ +S + + Sbjct: 795 ESKELIE--GYFKTYPD----IRAYMDESIEVAKEKGYVETIYKR-KRFLPDINSHNAIV 847 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSY 579 + G A K V + + + ++L L + + Sbjct: 848 RGYAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDELEK 907 Query: 580 LNTTT 584 + Sbjct: 908 VKQIV 912 >gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8] gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8] Length = 905 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 118/638 (18%), Positives = 196/638 (30%), Gaps = 156/638 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEA 115 LK LE+ + H++ ++ V N I + T++ A + A Sbjct: 385 LKPWLEDATRAKLLHHAKYDAHV---FANEGIKLAGITEDTMLQAYVLESHRGVGLNDLA 441 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + ++L + K A G Y D T ++ + L Sbjct: 442 QRYLGRSGVSYEDLCGKGAKQ----------IGFDEVAVDKAGHYAAEDSDFTLQLHQVL 491 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P+ + E ++ + T+ G VD A + + E +L+Q+ L Sbjct: 492 RPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHKLGQEMLQLEQKAYEL 551 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF L + T +T + VLS + P + R Sbjct: 552 A-GQPFNLNSPKQLGEILFGRMQLPVVRKTASGAPSTDEEVLSKLAQDYPLPQVLLEYR- 609 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 610 ------------------------------GLSKLKSTYTDKLPRMINPNTGRVHTHYSQ 639 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +SDP+ I VR IA +G L+ AD + IE R++A ++ + Sbjct: 640 AAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-MLLSADYSQIELRIMAHVSDDA 698 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AFE GED++ T + F V+ V+ +QR K + L Y G +AS G Sbjct: 699 NLQRAFEAGEDIHRATASEVFGVSLEDVSTEQRRAAKAINFGLIYGMGVF---GLASNLG 755 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + A ++ A E ++ T R Sbjct: 756 ITRDAAQAYIDRYFARYP------GVAMYMDDTRRRAREQGYVETVFGR----------- 798 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGN 575 L LP R R G Sbjct: 799 ------------------------------------------RLQLPEIRGASGPRRQGA 816 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVH 629 R+ +N Q + D++ M + A K +++ VH Sbjct: 817 ERAAINAPM------------------QGTAADLIKMAMIAVQDWLEAEKLQTRMIMQVH 858 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+V E PD + E L LM + + +PL AE Sbjct: 859 DELVLEAPDAELELVKEALPRLMCNVAT--LRVPLVAE 894 >gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1] Length = 968 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 113/633 (17%), Positives = 201/633 (31%), Gaps = 142/633 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V + +N + ++K + P + AL A Sbjct: 442 LKPILEDQAVLKIGYNMKYNWLIMKQYAIVTQPFDDIMLISY---------ALDAGTSTH 492 Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K + IA K TH + F Y +T +++ L Sbjct: 493 NRDILSERWLKHKPIAY--KDLTHNGKKITSFAQVDLKQATF--YAAEGADITLRLWQVL 548 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + + L + + +RG VD + L+ + L++E+ L Sbjct: 549 KPQLVAQGVTKIYERLDRPLIEVLAKMEERGILVDRQILSRLSCELAQAALSLEEEIYQL 608 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFNNR 280 G + ++L LF + GL T+ +T ++L ++ + R Sbjct: 609 -VGERFNIASPKQLSDILFGKMGLPGGVKTKNGQWSTSAQILEELAAEGHTLPRKIVDWR 667 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ P LP R H Sbjct: 668 QL-------------------------------TKLKSTYTDALPYYILPETGRVHTNYS 696 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T +S+P+ I +R+ IA +G L+ AD + IE R+LA +A Sbjct: 697 LATTSTGRLSSSEPNLQNIPIRTPEGRKIRTAFIAPKGCVLLSADYSQIELRILAHIANI 756 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF +D++ T ++ F VA + D R K + + Y A +A+ Sbjct: 757 TALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINFGIIYGISAF---GLANQL 813 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ N A + E P I+D T K++ ++H Sbjct: 814 SISRNE----------------ASRYIDIYFERFP--GIKDYMETT------KSFARQHG 849 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V ++ GR + Y ++ Sbjct: 850 YVETIF-------------------------------------------GRRIHYPEIKA 866 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 S + T + G + I +A+ I EG + K ++L VHDE++ E Sbjct: 867 TNSQIRTFNERAAINAPIQGSAADIIRRAM---IQMEGALKKEKLSAKMLLQVHDELIFE 923 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGL--PLKA 665 P+T+ +L +M + A L PLK Sbjct: 924 VPETESEKTKVLVTKVMENAAMPALSLSVPLKV 956 >gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] Length = 896 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 112/713 (15%), Positives = 215/713 (30%), Gaps = 181/713 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------VHDPVMPQ 55 + ID ET S + + + ++ + D + + Sbjct: 324 ISIDLETSS--------LDPH--EAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQVLL 373 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113 LKE LE++ IV N F+ +L+ + ++A P + Sbjct: 374 RLKELLEDSGTKIVGQNLKFDYEILEKHGIEPVVP---HFDTMIAAYLLNPDSRRFNLDD 430 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK + EL+ + L D+ + E + D + +++ Sbjct: 431 LALKFLGYRTTSFSELMNK-------NQLKDQFEKVSVEEAAKYS---VEDADIALRLYR 480 Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L E EL + + G ++V L++ + K+ +EL Sbjct: 481 VLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLKNLSEEYEKRLGKIREELF 540 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279 L G + ++ LF + GL+ T+ +T VL P ++ Sbjct: 541 ELA-GEPFNPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAVLEELVNEHPIIQKLL-- 597 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + + P P R H Sbjct: 598 -----------------------------DYRKYQKLKSTYLDTLPTLVNPVTGRIHASY 628 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMA 393 Q T +S+P+ + +R CV+ + K++ AD + IE RVLA + Sbjct: 629 HQTGTGTGRLSSSNPNMQNLPIKGEEGKEIRKCVVPQKSDWKIISADYSQIELRVLAHFS 688 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF+ GED++ T +R + V+ VT + R +GK++ ++ Y + Sbjct: 689 EDERLISAFKNGEDVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIYGISPYGLARRLK 748 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 E + + Sbjct: 749 --------------------------------------------IKTHIAENMISNYFNA 764 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + NE+ ++ + + RKR + + + I Sbjct: 765 YPGVRKFINEVIHEAKEK-GYVRTLFGRKRE---IPHFRTRNKMKIQE------------ 808 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627 R +NT +Q + DI+ M+ K +L Sbjct: 809 -GERIAINTP------------------IQGTAADIMKLAMIKIHKMVKEEGLEAFPILQ 849 Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYRK 675 VHDE+V E P T+ + ++T G +PL+ + + + K Sbjct: 850 VHDELVFEAPATE---VDRVCDILTRG---MSGVVELKVPLEVDVAVNSYWGK 896 >gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2] gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2] Length = 931 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 111/680 (16%), Positives = 207/680 (30%), Gaps = 166/680 (24%) Query: 28 VCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENTDVTIVAHNSYFER 77 ++ +F H +P+ L K LE+ + + +++ Sbjct: 371 ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLNMDMVLARLKPWLEDAGKKKLGQHVKYDQ 430 Query: 78 TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 V N I + + T++ + AL+ S+ ++L C Sbjct: 431 HV---FANHGITVRGYAHDTMLQSYVLEADRPHNLTSLALRHVSRSGISYEDL----CGK 483 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ------ 190 ++ P + + Y D T ++ L P L ++ + Sbjct: 484 GKNQI------PFAQVSVDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYELEMQTS 537 Query: 191 ----TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 I G +D + + KL++E + G + ++L F + Sbjct: 538 EALFRIERNGVSIDAGELARQSNDLGARILKLEEEAYEIA-GQPFNLSSPKQLGEIFFDK 596 Query: 247 TGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 G+ + T T T + VL + P ++ +R Sbjct: 597 LGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRSL-------------------- 636 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 S+ LP R H Q + ++DP+ I Sbjct: 637 -----------SKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRLSSNDPNLQNIPVR 685 Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 VR +A EGK + AD + IE R++A ++G++ L AF+ G D++ T A F Sbjct: 686 TPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVF 745 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V+ +V+ +QR KV+ L Y + +A G+ A + Sbjct: 746 GVSVDEVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAAAAYID---------- 792 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + R + + Q E G Sbjct: 793 ----------------------------------KYFQRYPGVKRYMDQTVELAHAQGYV 818 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGK 596 RR L+LP R R+ +N Sbjct: 819 ETVFGRR---------------LVLPEINGGNGPRKKAAERAAINAPM------------ 851 Query: 597 LTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649 Q + D++ + M ++A K +++ VHDE+V E P+ ++ + + Sbjct: 852 ------QGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAEIPS 905 Query: 650 LMTSNPSWAKGLPLKAE-GY 668 +M +PL AE G+ Sbjct: 906 IMAGVAD--LSVPLLAEIGF 923 >gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 925 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 107/646 (16%), Positives = 192/646 (29%), Gaps = 143/646 (22%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-G 104 D + V L L + V + HN ++ V+ + + + T++L+ G Sbjct: 392 DILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA---GLTVTAFDDTMLLSYVLDG 448 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 A + ++ C ++ +DR Y D Sbjct: 449 ASHGHGMDELAKLHLDHDTIKFADV----CGTGKNQITFDR------VPLDKALAYAAED 498 Query: 165 VTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 +T + L+ + E+ L + + G VD L+ Sbjct: 499 ADITLRLHGALKARLLAERMVTVYETLERPLVPVIVAMEAAGIKVDRTALMALSAEFGGR 558 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL- 269 +L+ ++++L G + ++L LF L T+T T L Sbjct: 559 MAELEVQIQNLA-GREFNVGSPQQLGKVLFENMSLPGGKKTKTGQWGTGADALEELAAQG 617 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 +V + R S+ Q Sbjct: 618 HDLPARVLDWRQL-------------------------------SKLKGTYTDALVAQIN 646 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384 PR R H +T +SDP+ I +R IA G L+ AD + I Sbjct: 647 PRTGRVHTSFALALTTTGRLSSSDPNLQNIPIRSEEGRKIRHAFIAEPGHVLLSADYSQI 706 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A +A + ++AF G D++ T A+ F V + R K + + Y Sbjct: 707 ELRLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYGIS 766 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A +A G++ + + + R E E A + F+ T Sbjct: 767 AF---GLAQQLGISNGEAKSYIDAYFGR--YPE----IRDFMERTKEEARANGFVLTPFG 817 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R K + + +A G A KR ++ LP+ Sbjct: 818 R-KVFTPGIKDKNGAMRAFAERAAINGPIQGGAADIIKRA--------------MIRLPA 862 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 A++ + L ++ Sbjct: 863 ---------------------------------------ALAAEGLKARLL--------- 874 Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 L VHDE+V E P + + +++ +M S +PL AE G+ Sbjct: 875 -LQVHDELVLEVPVAEQDATRAVVCRVMESAAQ--LDVPLVAEAGF 917 >gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917] gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917] Length = 996 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 110/640 (17%), Positives = 195/640 (30%), Gaps = 146/640 (22%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + + N+ ++R +L +P+ + +LA L+ L + Sbjct: 458 LASAEHPKALQNAKYDRLIL---LRHGLPLGGVVMDTLLADY------LRDAAAKHGLDA 508 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKP-----NHREAWRLFGEYCKGDVTVTREIFK-- 173 + + L + K YC DV +TR + Sbjct: 509 MAERD------YGIQPTLFSDLVGKAKDGKASCFAEVEINQAALYCGMDVHLTRRLALDL 562 Query: 174 ---------RLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 RL PL + E L + + G +D L+ + +L+ E + Sbjct: 563 RQQLAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAALSTEMAQTLERLETEAK 622 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTC---QRVLSSNKKLTPQAIQVFN 278 G+ + ++L LF GL + T+T VL ++ P V Sbjct: 623 Q-AAGMEFNLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLEQDHPVVPLVLE 681 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R S+ P R H + Sbjct: 682 HR-------------------------------TLSKLKSTYVDALPQLVEAETGRVHTD 710 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I S +R + G +L+ AD + IE R+L ++ Sbjct: 711 FNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQAGWQLLSADYSQIELRILTHLS 770 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 GE+ +A+ G+D++ T + VT D+R +GK + + Y GA Q+ A Sbjct: 771 GEEVLQQAYRDGDDVHALTARLL--LEKKAVTADERRLGKTINFGVIYGMGA---QRFAR 825 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 TG++ + + E + F E A+ ++ T R + Sbjct: 826 ETGVSQAQAKEFL--SKYKERYPKVFAFL----ELQERLALSRGYVETILGRRRP----- 874 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 D+N L +L ++ Sbjct: 875 -------------------------------------FHFDRNGLGRLLGKD----PLEI 893 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 + Q R +Q S DI+ M+ A ++L Sbjct: 894 DLEVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALEQQSLPARLLLQ 947 Query: 628 VHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P E ++ M +PL E Sbjct: 948 VHDELVLEVDPTALERVRQLVVTTMEQAIQ--LSVPLVVE 985 >gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16] gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16] Length = 941 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 87/598 (14%), Positives = 180/598 (30%), Gaps = 86/598 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70 D G D ++ +F ++ + + + + +N V Sbjct: 374 DTETTGTDP--MDAELVGMSFSITENQAFYVPVPAERKEAIKIVREFEPVFKNEKSLKVG 431 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127 N ++ VL+ N I + + ++A P + + E + + Sbjct: 432 QNIKYDMLVLQ---NYGIEVRGKLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 486 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181 ELI + +N + Y D VT ++ LE K Sbjct: 487 ELIG-------PKGKGQKNMRDLSPQ--EVYLYACEDADVTLKLKNILEQELKKNDAEKL 537 Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + I G +D ++ +++E+ +L G + + Sbjct: 538 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEG-EFNIASPK 596 Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF + + T+T T + VL S + ++ Sbjct: 597 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILE-------------- 642 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + G + P P+ R H +Q +T +S Sbjct: 643 -----------------YRGLKKLLSTYIDALPQLINPKTGRIHTSFNQTVTATGRLSSS 685 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I +R I +G AD + IE R++A ++ ++ + AF +G D Sbjct: 686 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYD 745 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A+ + V +VT D R K + Y +A ++ L+ Sbjct: 746 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 802 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 E + +++ + EH + K+ +SR + + + Sbjct: 803 --GYFETYPQVKSYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 855 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584 G A K + K + ++L L + + + Sbjct: 856 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVEQVV 913 >gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035] gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035] Length = 934 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 104/637 (16%), Positives = 184/637 (28%), Gaps = 150/637 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ + + N ++ +L A PI + + A GL + Sbjct: 412 LKPVLEDDAILKIGQNMKYDAKILAAHGITVAPIDDTML-MSYALHAGL-HGHGMDTLSE 469 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + + L+ R +Y D +T ++ L+ Sbjct: 470 RYLNHSPIPIRSLL----------GSGKAAVTFDRVPVAEAVKYAAEDADITLRLWLTLK 519 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P + E+ L + + G VD ++ + L+ E+ +L Sbjct: 520 PQLHRAQVTTVYETLERPLVPVLARMERDGVLVDRDTLRAMSGKFAQKMAGLESEIHALA 579 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 + ++L LF E GL + +T T VL +V + R Sbjct: 580 R-RSFNVGSPKQLGEILFDEMGLPGGEKGKTGAYATGADVLEDLATEHDLPARVLDWRQL 638 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ P R H Q Sbjct: 639 -------------------------------SKLKSTYTDALQDHIDPDTGRVHTSYLQT 667 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +SDP+ I +R +A+ G +LV D + IE R+LA +AG + Sbjct: 668 GASTGRFSSSDPNLQNIPVRSEEGRRIREAFVAAPGNRLVSLDYSQIELRILAHVAGIET 727 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G D++ T + FNV A++T + R K + + Y + Sbjct: 728 LKQAFRDGHDIHAMTASEMFNVPLAEMTPEIRRQAKAINFGVIYGISGFGLARNLRI--- 784 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 +A+ F E P I+D T + ++H V Sbjct: 785 ----------------PRGEAQGFIDRYFERFP--GIKDYMDATTA------FAKEHGYV 820 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 L+ E + +A AR R Sbjct: 821 QTLFGRKIHTPEIAAKGPRAGFAR-----------------------------------R 845 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIV 633 + +N +Q + DI+ M+ ++L VHDE++ Sbjct: 846 AAINAP------------------IQGTAADIIRRAMIRMPEAIEGLPCKMLLQVHDELI 887 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWA--KGLPLKAEG 667 E + + +M A +PL + Sbjct: 888 FEVAEDSVDRLIDVARAVMQGAADPAVRLDVPLVVDA 924 >gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46] gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46] Length = 935 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 87/598 (14%), Positives = 180/598 (30%), Gaps = 86/598 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVA 70 D G D ++ +F ++ + + + + +N V Sbjct: 368 DTETTGTDP--MDAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEPVFKNEKSLKVG 425 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127 N ++ VL+ N I + + ++A P + + E + + Sbjct: 426 QNIKYDMLVLQ---NYGIEVRGKLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 480 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181 ELI + +N + Y D VT ++ LE K Sbjct: 481 ELIG-------PKGKGQKNMRDLSPQ--EVYLYACEDADVTLKLKNILEQELKKNDAEKL 531 Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + I G +D ++ +++E+ +L G + + Sbjct: 532 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEG-EFNIASPK 590 Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF + + T+T T + VL S + ++ Sbjct: 591 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILE-------------- 636 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + G + P P+ R H +Q +T +S Sbjct: 637 -----------------YRGLKKLLSTYIDALPQLINPKTGRIHTSFNQTVTATGRLSSS 679 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I +R I +G AD + IE R++A ++ ++ + AF +G D Sbjct: 680 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYD 739 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A+ + V +VT D R K + Y +A ++ L+ Sbjct: 740 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 796 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 E + +++ + EH + K+ +SR + + + Sbjct: 797 --GYFETYPQVKSYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 849 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584 G A K + K + ++L L + + + Sbjct: 850 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVEQVV 907 >gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 929 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 99/540 (18%), Positives = 187/540 (34%), Gaps = 84/540 (15%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113 L+ EN +T V N ++ VL+ N I + + ++A P + + Sbjct: 406 LRPFFENEKITKVGQNLKYDLKVLQ---NYGIKVQGALFDTMIAHYLINPDMRHNMDLLS 462 Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E L + +E LI KG+ + A EY D VT ++ Sbjct: 463 ETYLGYTPIAIES---LIG---KGKAQRSMRT-------VALEEVKEYAVEDADVTWQLK 509 Query: 173 KR----LEPLSSK------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L ++++ E L + + G +DVA ++ +D E +L+ + Sbjct: 510 DVFKAELPKVNAQKVYADLEMPLLKVLAVMEREGVTLDVAYLKEYSKTLDAEIAQLEATI 569 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVF 277 G + ++L LF + + T+T T + VL+ + Sbjct: 570 AEQA-GTPFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + P + PR R H Sbjct: 629 EWRQ-------------------------------VQKLKSTYVDALPLEVNPRTGRVHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 Q + +++P+ I VR IA + L+ AD + IE R++A Sbjct: 658 TYMQTVAATGRLSSNNPNLQNIPIRTERGQRVRKAFIARNDDYILLSADYSQIELRIIAA 717 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ E +++F GED++ T A+ FNV VT++QR+ K + + Y A + Sbjct: 718 LSEEHNMIESFLHGEDIHRATAAKVFNVPLEAVTREQRSHAKTVNFGIIYGVSAF---GL 774 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 ++ T L+ + L+ T A + + N+ + EH + +G ++ Sbjct: 775 SAQTDLSRSQSKELIDTYYA--TYPNLRNYIQKQIHFAQEHGYVETVLGR-----RRYLP 827 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 HSR + + G A K + + + + + ++L LV+ Sbjct: 828 DIHSRNQVVRGAAERNAVNAPIQGSAADIIKIAMIRIYDLLQAQQLQTRMLLQVHDELVF 887 >gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 92/552 (16%), Positives = 171/552 (30%), Gaps = 72/552 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAV 112 LK LEN + + + ++ V N I + W +LA P+A Sbjct: 402 DTLKPILENPAIGKIGQHMKYDAHVFN---NHGISLAGWAFDTMLASYVLNPTATRHGMD 458 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A +++ + K T + Y D +T ++ Sbjct: 459 DLAQYYLDYTTTTFEQIAGKGAKQLTFNQI----------ELEKAAPYAAEDADITWRLY 508 Query: 173 K----------RLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + +LE L E + + + G +D+ L Q + L+ Sbjct: 509 EYFAQALAKIPKLEKLLLEIEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESH 568 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF + G+ + T ++ + + + Sbjct: 569 AIELA-GQPFNVSSPKQLGEILFDKLGIA---GGKKTASGQYATGEAILEKIDHPI---- 620 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + L++ S+ Q+ R H Q Sbjct: 621 ----------------------IATILEYRSLSKLKSTYTDSLIAQSDSETQRVHTSYHQ 658 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 IT ++DP+ I +R IA +G+ ++ AD + IE R++A + ++ Sbjct: 659 AITATGRLSSTDPNLQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDE 718 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 LKAF G D++ T A +A VT DQR K + L Y A +A Sbjct: 719 ALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAF---GLAKQLK 775 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+ + + EN A E ++ T R + + Sbjct: 776 LSRAEAQEYITLYFSRYP------SVHDYMENTRALAAEQGYVETVLGR-RLYMENIRAG 828 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + +A G A K + V K + ++L LV+ + Sbjct: 829 NAMVRQAAERAAINAPLQGSAADIIKLAMIS-VDQALPKEHAKMLLQVHDELVFEVDEDK 887 Query: 577 RSYLNTTTRQLT 588 + ++L Sbjct: 888 ADEVTALLKKLM 899 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YD 623 L R N N RQ L Q + DI+ M++ +A Sbjct: 816 LGRRLYMENIRAGNAMVRQAAERAAINAPL-----QGSAADIIKLAMISVDQALPKEHAK 870 Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLM 651 ++L VHDE+V E + ++L LM Sbjct: 871 MLLQVHDELVFEVDEDKADEVTALLKKLM 899 >gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] Length = 903 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 100/624 (16%), Positives = 199/624 (31%), Gaps = 123/624 (19%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 + + + T +++ L L +P + +LA PS + Sbjct: 388 ISDPNQTKAVYDAKKTMVTLNR---LGLPCEGILFDFMLASYVLDPSQTIDDFASVASRY 444 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 E EL+ F KG + + +H + + V + E ++LE + Sbjct: 445 DYTQVEADELV--FGKGAKYNVPDETKVADHLARKAVAIAKLEQTVNESLEKNEQLELVD 502 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 + E L ++ + G VD + + V ++ + L G + ++L Sbjct: 503 NLELPLTFVLAKMEMEGVRVDTERLEEMKSEMAVRLQTIESSIHELA-GTTFNINSPKQL 561 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF GL T+T T VL S P ++ R + + L++ Sbjct: 562 GVILFETLGLPPVKKTKTGYSTAADVLESLSGKHPIIDEILLYRQL-GKLQSTYVEGLLK 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + + S+ H +Q +T + DP+ Sbjct: 621 VTDK------------------------------KTSKVHTRFNQTLTQTGRLSSVDPNL 650 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + S G K+ AD + +E RVLA ++ ++ + AF D++ Sbjct: 651 QNIPIRLEEGRKIRQVFVPSHPGWKMFSADYSQVELRVLAHISQDENLVYAFRNDYDIHT 710 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+V+ A+V R K + + Y + G+ + Sbjct: 711 KTAMDVFHVSEAEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKAAKDFIDRYF 767 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 A + D + + + + E + Sbjct: 768 AS--YPDVKVYMEEIVRSAKEKGYVE---------------------------------- 791 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 I +RR +P + R+ R R+ +NT + Sbjct: 792 -------TILHRRRYIPEITS--------------RNFNVRSF-AERTAMNTPIQ----- 824 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-H 649 G + I QA+ +L + + + + ++L VHDE++ E P+ + + + Sbjct: 825 ----GSAADIIKQAM---LLMDERLESEQMEAKLLLQVHDELIFEAPEAEIAKLAEIVPD 877 Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673 +M + A +PLK + + Sbjct: 878 VMENAV--ALSVPLKVDSAHGDSW 899 >gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160] gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160] Length = 913 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 119/655 (18%), Positives = 204/655 (31%), Gaps = 156/655 (23%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 D PV+ D V+ LK LE+ D V + ++ VL + TL+ Sbjct: 377 DAPVQ---LPRDEVL-AKLKPWLESADHKKVGQHLKYDEQVLANYGIEMRGVE--HDTLL 430 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + AL+ +K + +++ + + A Sbjct: 431 ESYVLESHRTHDMDSLALRHLGEKTIKYEDVAGKGAQQ----------IGFDEVALDKAA 480 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207 EY D +T + + L P + E+ L ++ + I G +D Sbjct: 481 EYAAEDADITLRLHQALYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQ 540 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263 + + +L+ E L G + +++ F + GL + T + T + VL Sbjct: 541 SSEIATRLIQLEGEAYELAGG-EFNLGSPKQIGQIFFEKLGLPVIKKTPSGAPSTDEEVL 599 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + +R G S+ Sbjct: 600 QKLAEDYPLPKVLLEHR-------------------------------GLSKLKSTYTDK 628 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P + R H Q + ++DP+ I +R IA G KLV Sbjct: 629 LPRMVNRQTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ ++AF GED++ T + FNV P +V+ DQR + KV+ Sbjct: 689 ADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINFG 748 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y A +AS G+ Sbjct: 749 LIYGMSAF---GLASNLGITR--------------------------------------- 766 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + K + +R + + + G RR Sbjct: 767 -----DAAKMYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGRR-------------- 807 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 L LP + N RQ +Q + D++ M+ Sbjct: 808 -LWLP------------EINGGNGPRRQAAERAA-----INAPMQGTAADLIKMSMIAVQ 849 Query: 619 ------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 K G +++ VHDE++ E PD + L LM A +PL AE Sbjct: 850 NWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVA--ALKVPLVAE 902 >gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R] Length = 941 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 87/598 (14%), Positives = 180/598 (30%), Gaps = 86/598 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVA 70 D G D ++ +F ++ + + + + +N V Sbjct: 374 DTETTGTDP--MDAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEPVFKNEKSLKVG 431 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK 127 N ++ VL+ N I + + ++A P + + E + + Sbjct: 432 QNIKYDMLVLQ---NYGIEVRGKLFDTMVAHYVLQPELRHNMDYLAEIYLH--YQTIHIE 486 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181 ELI + +N + Y D VT ++ LE K Sbjct: 487 ELIG-------PKGKGQKNMRDLSPQ--EVYLYACEDADVTLKLKNILEQELKKNDAEKL 537 Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + I G +D ++ +++E+ +L G + + Sbjct: 538 FYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEG-EFNIASPK 596 Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF + + T+T T + VL S + ++ Sbjct: 597 QVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILE-------------- 642 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + G + P P+ R H +Q +T +S Sbjct: 643 -----------------YRGLKKLLSTYIDALPQLINPKTGRIHTSFNQTVTATGRLSSS 685 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I +R I +G AD + IE R++A ++ ++ + AF +G D Sbjct: 686 NPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYD 745 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A+ + V +VT D R K + Y +A ++ L+ Sbjct: 746 IHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVF---GLAERMNVDRKEAKELID 802 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 E + +++ + EH + K+ +SR + + + Sbjct: 803 --GYFETYPQVKSYMDKSIQVAREHGYVETIFHR-----KRFLPDINSRNAVVRGYAERN 855 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNTTT 584 G A K + K + ++L L + + + Sbjct: 856 AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVEQVV 913 >gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] Length = 940 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 102/640 (15%), Positives = 194/640 (30%), Gaps = 147/640 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL--ARSNGLPSALKAV 112 +LK L + + V N ++ +L+ DI + + T++L A G S Sbjct: 411 DILKPVLLDPSILKVGQNLKYDLLILRE---RDIDVVGYDDTMLLSYAADCGFASLHGMD 467 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + + KE++ K +T + Y D VT + Sbjct: 468 ELSKRHLGHEPIPYKEIVGTGKKQKTFG----------DVPIKDAYIYAAEDADVTLRLH 517 Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L+ + ++ L + + G VD L+ + + Sbjct: 518 TILKSRAIESQVYTVYETMDRPLVSVITDMERAGIKVDRDRLSALSGEFAQRMAAHEAAV 577 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRM 281 + G + +++ LF + GL T+T + + L ++ Sbjct: 578 HDIA-GERFNLASPKQIGDILFGKLGLPGGKKTKTGAWSTAADTLETLAADGAEIAQE-- 634 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 L G ++ P+ R H Sbjct: 635 -------------------------ILSHRGLAKLKGTYTDALSESIHPKTGRVHTSFSL 669 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T ++DP+ I +R I +G L+ AD + IE R+LA +A Sbjct: 670 ASTTTGRLSSNDPNLQNIPIRTEDGRKIREAFIPEDGNVLISADYSQIELRLLAHIAEIG 729 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF G D++ T A F V + R K + + Y A +A G Sbjct: 730 PLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAINFGIIYGISAF---GLARNLG 786 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + +K + + + + E A ++ T Sbjct: 787 IGRDEASLFIK------RYFERFPGIKAYMDETIEGARVHGYVET--------------- 825 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + +R P + K+ P+ R +G Sbjct: 826 ----------------------LFGRRSHTPNIKAKQ---------PNIR------MGAE 848 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 R +N +Q + DI+ M+ + ++L VHD Sbjct: 849 RQAINAP------------------IQGSAADIVKRAMIRVPAALAAHRLSAKMLLQVHD 890 Query: 631 EIVCETP-DTDEFNASMLYHLM--TSNPSWAKGLPLKAEG 667 E+V E P D + A++L +M + P+ + +PL E Sbjct: 891 ELVVECPADQADETAAVLKDVMEGAAGPALSLSVPLVVEA 930 >gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup] gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup] Length = 969 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 101/635 (15%), Positives = 204/635 (32%), Gaps = 146/635 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113 LK LE++ V + N ++ V+K DI I + T++L+ + L + + Sbjct: 443 LKPILEDSSVLKIGQNIKYDWLVMKQY---DIIISSFDDTMLLSYAFDAGILTHNMDDLS 499 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E + K K+L K + + + Y +T +++ Sbjct: 500 E--RWLKHKPISYKDLTHNGKKITS----------FAQVDLKQATLYAAERADITLRLWQ 547 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P ++ L + + +RG +D + L+ + L++E+ Sbjct: 548 VLKPQLVARGMTKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIY 607 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFN 278 + ++L LF + GL T+ +T + L ++ Sbjct: 608 KQAD-EKFNLASPKQLGDILFGKMGLSGGAKTKGGQWSTSAQTLEELAAEGHVLPRKIIE 666 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + P + R H Sbjct: 667 WRQLA-------------------------------KLKSTYTDALPSYIFSKTGRVHTN 695 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 IT +S+P+ I +R+ IA +G L+ AD + IE R+LA +A Sbjct: 696 YSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIA 755 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + +AF G D++ T ++ F VA + D R K + + Y A +A+ Sbjct: 756 DIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAF---GLAN 812 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ R + + ++ Sbjct: 813 QLGISRQEA-----------------------------------------GRYIQLYFER 831 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + I AR+ V ++ GR + Y ++ Sbjct: 832 FPGIKDY------------MEKTKIFARENGYVETIF--------------GRRIHYPEI 865 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 + + + G + I +A+ I E + K ++L VHDE++ Sbjct: 866 KAKNVKIRSLNERAAINAPIQGSAADIIRRAM---IQMENALKEEKLSAKMLLQVHDELI 922 Query: 634 CETPDTDE-FNASMLYHLM--TSNPSWAKGLPLKA 665 E P+ + +++ ++M + P + +PL+ Sbjct: 923 FEVPEEESKKTMAVVKNVMENATMPILSLSVPLEV 957 >gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815] gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815] Length = 915 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 98/540 (18%), Positives = 177/540 (32%), Gaps = 80/540 (14%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 D PV+ D V+ LK LE+ D V + ++ VL I TL+ Sbjct: 379 DAPVQ---LPRDEVL-AKLKPWLESRDKKKVGQHLKYDEQVLANYGITMDGIE--HDTLL 432 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + AL+ K + +++ + + +D A Sbjct: 433 QSYVLESHRPHDMDNLALRHLGLKTIKYEDVAGKGA----SQIGFD------EVALDKAS 482 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTL 207 EY D +T + + L P + E L ++ + + G +DV Sbjct: 483 EYAAEDADITLRLHQTLYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQ 542 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263 + + +L+++ L G + +++ F + L + +T + VL Sbjct: 543 SNEIATRLVELERQAYDLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVL 601 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + +R G S+ Sbjct: 602 QKLAEDYPLPKTILEHR-------------------------------GLSKLKSTYTDK 630 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P R H Q + ++DP+ I +R IA G KLV Sbjct: 631 LPRMVNASTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 690 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ L+AF+ GED++ T + F+V P +V+ DQR I KV+ Sbjct: 691 ADYSQIELRIMAHISGDEALLRAFKQGEDIHRATASEVFSVTPLEVSNDQRRIAKVINFG 750 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y + +AS G+ + + A EN A + Sbjct: 751 LIYGMSSF---GLASNLGITRDAAKLYIDRYFARYP------GVAAYMENTRTSAKMKGY 801 Query: 499 IGTACERVKKAW-RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + T R + W + + +A G A K + + ++ Sbjct: 802 VETVFGR--RLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWIEESGI 859 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 18/109 (16%) Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619 GR L + N RQ +Q + D++ M+ K Sbjct: 807 GRRLWLP----EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVQKWIEES 857 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 +++ VHDE+V E PD + + L LM +PL AE Sbjct: 858 GIRTRMIMQVHDELVLEVPDDELSDVRKRLPELMCGVAQ--LKVPLVAE 904 >gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229] gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247] gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH] gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU] gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247] gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH] gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU] gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229] Length = 926 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 354 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 403 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 404 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 461 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 462 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 511 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 512 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 571 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 572 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 629 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 630 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 659 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 660 AVAVTGRLASNDPNLQNIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 719 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 720 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 776 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 777 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 829 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 830 NGPRRQAAERAAINAPMQGTA 850 >gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] Length = 923 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803] gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803] Length = 996 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 111/650 (17%), Positives = 202/650 (31%), Gaps = 146/650 (22%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 V+ + L L + N+ ++R +L + + + +LA L+ Sbjct: 448 EVVLEQLAPWLSSPSHPKALQNAKYDRLIL---LRHGLVLGGVVMDTLLADY------LR 498 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----RLFGEYCKGDV 165 L G L + K + YC DV Sbjct: 499 DAAAKHSLD------GMAERDYGITPTLFSDLVGKAKDGKASCFAEVPSDQAALYCAMDV 552 Query: 166 TVTREIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 +TR + + L E L + + G +D++ TL++ + Sbjct: 553 HLTRRLAIDLRQQLQASGEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKEMGE 612 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTC---QRVLSSNKK 268 T+L+ + + G+ + ++L LF GL + T+T VL Sbjct: 613 TLTRLEADAKQ-AAGVDFNLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLAD 671 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 P V +R+ S+ P Sbjct: 672 DHPVVPLVLEHRVL-------------------------------SKLKSTYVDALPQLV 700 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383 R H + +Q +T +S+P+ I S +R + E L+ AD + Sbjct: 701 EAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEHWTLLSADYSQ 760 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+L ++GE+ +A+ G+D++ T + V+ D+R +GK + + Y Sbjct: 761 IELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDDVSADERRLGKTINFGVIYGM 818 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GA Q+ A TG++ + + E + F E A+ ++ T Sbjct: 819 GA---QRFARETGVSQTDAKEFL--SKYRERYPKVFAFL----ELQERLALSRGYVET-- 867 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 I+ R+R D+N L +L Sbjct: 868 ----------------------------------IMGRRRP------FHFDRNGLGRLLG 887 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-- 621 ++ + + Q R +Q S DI+ M+ A Sbjct: 888 KD----PFEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQ 937 Query: 622 ----YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V E P + +++ M +PL AE Sbjct: 938 HSLPARLLLQVHDELVLEVEPSALDDVKALVVSTMEKAVE--LSVPLVAE 985 >gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168] gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168] Length = 926 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 106/625 (16%), Positives = 194/625 (31%), Gaps = 156/625 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAV 112 L+ T+ HN F+ VL++ L P R T+V A + L+A+ Sbjct: 407 QLERLFSVPACTLAMHNGKFDYEVLRSN-GLAEPRCRIADTMVAAWLLDPDRSAYSLEAL 465 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + G E I + + Y D +T +++ Sbjct: 466 AA--------DKLGLETIPY-------TDVVPKGSTFADIPLEQAVPYAAEDADLTWQLY 510 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P + E + + + G ++ + + + + E ++ +E+ Sbjct: 511 RLFLPRLAAAKLGDLFWNLEMPVLPILAEMELDGIHIEKSELISYGEELTAEIERIRREI 570 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNN 279 L G + ++L+ LF E L T+T VL + L P ++ + Sbjct: 571 YEL-VGHEFNVASTKQLQDVLFEERKLPPGKKTKTGYSTDTGVLETLAALDPVPRKILDY 629 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R++ ++ P R H Sbjct: 630 RLK-------------------------------TKLFSSYVDTLPLMVD-GNDRIHTSF 657 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q T + +P+ I +R A G +L+ AD + IE +LA ++G Sbjct: 658 IQTGTATGRLSSREPNLQNIPVRDEDGRRIRLAFTAEPGCQLISADYSQIELVILAHLSG 717 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + AF G D++ T A F V P VT D R K + + Y A ++A Sbjct: 718 DPNLCAAFSGGTDVHRATAALIFGVQPDAVTPDMRRTAKTINFGVMYGMSAF---RLAGA 774 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ A + +A+ + + Sbjct: 775 LGIPRTQAAEFI-----------------------------------------EAYFKTY 793 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + V NE+ A +Q I +RR + + S G Sbjct: 794 AGVRNFMNEMVNAAQQ--SGFVETIFGRRRYIRAI---------------NSSSKIEKSG 836 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 R +NT +Q + DI+ + M++ A ++L V Sbjct: 837 AERVAVNTP------------------IQGSAADIVKKAMIDVAAALKKTGSPARLLLQV 878 Query: 629 HDEIVCETP-DTDEFNASMLYHLMT 652 HDE++ E P ++ AS++ M Sbjct: 879 HDELILECPQESAAETASLIKQTME 903 >gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] Length = 932 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 96/637 (15%), Positives = 179/637 (28%), Gaps = 150/637 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V + N ++ +L PI + A GL + Sbjct: 410 LKPVLEDPAVLKIGQNMKYDAKILARNGITVAPIDDTMLLSY-ALHAGL-HGHGMDALSE 467 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K L+ T + + +Y D +T +++RL+ Sbjct: 468 RYLDHTPIPIKTLLGTGKSAITFDFV----------PIEEATKYAAEDAEITLRLWQRLK 517 Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E+ + + + RG VD ++ + L+ E+ L Sbjct: 518 PRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRMSNAFAQKMAGLEAEIHELA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + +L LF + G ++ T VL +V + R Sbjct: 578 -GESFNVGSPAQLGEILFEKMGFEGGKTGKSGKYSTPADVLEDLATEHDLPRRVLDWRQL 636 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ P R H Sbjct: 637 -------------------------------SKLKSTYTDALQDHINPETGRVHTSYSIA 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + ++DP+ I +R +A G LV D + IE R+LA +AG Sbjct: 666 GANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGHVLVSLDYSQIELRILAHIAGIDA 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 AF G D++ T + F+V ++T + R K + + Y +A + Sbjct: 726 LKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGF---GLARNLRI 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 +A+ F E P Sbjct: 783 PR----------------AEAQAFIDTYFERFP--------------------------- 799 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + A++ + V ++ +K + P + + R Sbjct: 800 ----------GIRAYMDDTVAFAKEHKYVQTLFGRK------IHTPEIGAKGPQAGFAKR 843 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633 + +N +Q + DI+ M+ A ++L VHDE++ Sbjct: 844 AAINAP------------------IQGTAADIIRRAMVRMPAAIADLPARMLLQVHDELI 885 Query: 634 CETPDTDEFNAS-MLYHLM--TSNPSWAKGLPLKAEG 667 E + + +M + P +PL + Sbjct: 886 FEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVDA 922 >gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] Length = 903 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 110/648 (16%), Positives = 206/648 (31%), Gaps = 143/648 (22%) Query: 41 PVELWDCVHDPVM-----PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 P E + M L L + ++ AHN+ + ++ + + Sbjct: 366 PAEFIGSASEGQMFAAEGHSGLAALLGDEKISKTAHNAKY---LMNLLLSAGQAVKGLDF 422 Query: 96 TLVLARSNGLPSALKAVGEALKLSSQKMEEGKE-LIARFCKGETHECLYDRNKPNHRE-A 153 ++A L + ++ + + L K E + Sbjct: 423 DTMIAAHLLGEKNLAIKDLVFEHFGIEIADIENILTRNGKKASFSEVQLSEAAQLAADYT 482 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 +RL G + + + E L + + G +D L + + Sbjct: 483 FRLKGIFAAQ--LAETRLMDLFARV---EMPLLPILLGMERTGIMLDTDLLKAMAEKTGR 537 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLT 270 + KL++++ + G + ++L LF E L + T+T VL K Sbjct: 538 QIFKLEEDIYARA-GHNFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLEELKGKH 596 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + RM + P P Sbjct: 597 RIVDLILEYRML-------------------------------VKLKSTYLDTLPRMVNP 625 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385 R H +Q T +S+P+ I +R IA G L+ D + I+ Sbjct: 626 HTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQID 685 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA ++ + ++AF++ +D++ T AR N+ P++VTK+QR + K + + Y + Sbjct: 686 LRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPSKVTKEQRRLAKTVNFGVIYGMSS 745 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 ++ T L+L ++ Sbjct: 746 YGLEQ---ATELSLEEA-----------------------------------------DK 761 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 KA+ +K+ RV+ ++E+ Q + + +RR +P + Sbjct: 762 FIKAYFEKYPRVAVYFSEIKQQVRT--QGYVETLLGRRRYIPEI---------------- 803 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619 N+ R + RE VQ S DI+ M+ K Sbjct: 804 ---------------NSPNR-ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKLKEEK 846 Query: 620 AGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P T+ + +L M+ A +PLK E Sbjct: 847 LKSRLLLQVHDELIFEVPKTELGRMSDLLVETMSGAV--AFEIPLKVE 892 >gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] Length = 933 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 99/591 (16%), Positives = 177/591 (29%), Gaps = 86/591 (14%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F P +L L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPAQL----ERRQALAQLAPLLT 415 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V + + ++ V++ I + + +L + + Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH---GIALAGYSDDTLLQSFVLNSGS----------ARHD 462 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179 M+ + + K E + P + + Y D +T + L P Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLA 522 Query: 180 ----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G CVD A + + Q+ L G Sbjct: 523 AEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 582 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 629 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L++ G ++ P P+ R H Q Sbjct: 630 -------------------RVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 730 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE+G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 731 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A KR V + ++ + +++L LV+ Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVSVDAWIADHAEHALMILQVHDELVF 891 >gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305] gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305] Length = 923 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87] gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87] Length = 941 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 99/565 (17%), Positives = 188/565 (33%), Gaps = 92/565 (16%) Query: 1 MATLFI--DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + D ET S L ++ AF ++ + Q L Sbjct: 365 MKQKSVCFDTETTSLNPLE----------AQLVGIAFSWEGGKGYYLPFEDNIEKTQQLI 414 Query: 59 EAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 E L E+ ++ + N ++ VL I + ++A P Sbjct: 415 ELLRPFFESPEIEKIGQNLKYDIKVLDKY---GIKVEGPTFDTMIAHYLINPDMRHNMDI 471 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + + ELI + K + R+ P + EY D +T ++ + Sbjct: 472 LAETYLNYTPQPISELIGKKGKNQKS----MRDVPLAEQ-----TEYAAEDADITFQLKE 522 Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 E + E L + + G +D+ L++ +D + +L+ ++ Sbjct: 523 FFEKELDEAKTRKLFNEIEMPLVEVLADMEIEGINLDLDFLKKLSEALDRDIKELEAKIY 582 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 G ++L LF + L T+T T + VLS V Sbjct: 583 E-AAGEEFKISSPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHEIVQHVL- 640 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + G + P Q R H + Sbjct: 641 ------------------------------DYRGLVKLQNTYVDALPGQVEKSSGRVHTD 670 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392 Q I +++P+ I VR I S+ L+ AD + IE R++A + Sbjct: 671 YVQTIAATGRLSSNNPNLQNIPIRTERGRQVRKAFIPRSDDYVLLAADYSQIELRIIAAL 730 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + E+ +KAF+ GED++ +T ++ FNV +VT++QR+ K + + Y A ++ Sbjct: 731 SEEETMIKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLS 787 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + T L+ + L+ T + + N+ EH +G ++ + Sbjct: 788 NQTSLSRSESKELIDTYY--KTYPKLSNYIADQVAYAREHGYVSTILGR-----RRYLKD 840 Query: 513 KHSRVSELWNELHQAFEQTIENGKA 537 +S+ + + + G A Sbjct: 841 INSQNAVVRGAAERNAVNAPIQGSA 865 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 11/78 (14%) Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET--PDTDEFNASMLY 648 +Q + DI+ M+N K ++L VHDE+V + P+ D+ ++ Sbjct: 856 AVNAPIQGSAADIIKIAMINIHKKLGEEKLQTKMLLQVHDELVFDVYKPELDQVK-KLIK 914 Query: 649 HLMTSNPSWAKGLPLKAE 666 M + ++ +PL + Sbjct: 915 SEMEN--AYQLNVPLDVD 930 >gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD] gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD] Length = 917 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 115/698 (16%), Positives = 209/698 (29%), Gaps = 164/698 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID + D + ++ +F + H P +P+ L Sbjct: 336 IDAAALTAFDTETTALDP--MTARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVLA 393 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + LE+ D V + ++ VL I TL+ + A Sbjct: 394 RLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLA 451 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ K + +++ + K + + + +T ++ + L Sbjct: 452 LRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD----------ITLQLHQAL 501 Query: 176 EPLSSKE--QELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P ++E E Y D + G +D AL + + +L+ + Sbjct: 502 YPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYE 561 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + +++ F + L + +T + VL + P + +R Sbjct: 562 LAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR 620 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P P R H Sbjct: 621 -------------------------------GLSKLKSTYTDKLPRMVNPATGRVHTNYA 649 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + ++DP+ I +R IAS G ++V AD + IE R++A ++G+ Sbjct: 650 QAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF GED++ T A F V P +V DQR I KV+ L Y A +AS Sbjct: 710 ASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASNL 766 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + ++ Sbjct: 767 GITRDAAKLYIDRYFT-----------------------------------------RYP 785 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V++ + A + + + R+ L LP Sbjct: 786 GVAQYMEDTRTAAKDK-GYVETVFGRR-----------------LWLP------------ 815 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 + N RQ +Q + D++ M+ + +++ VH Sbjct: 816 EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVH 870 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+V E PD + L +M +PL AE Sbjct: 871 DELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAE 906 >gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] Length = 905 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 95/620 (15%), Positives = 179/620 (28%), Gaps = 140/620 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 + LK L + + N F+R V N I + TL+ + Sbjct: 381 EKLKPWLTDPSAPKLGQNLKFDRHV---FANHGIGLKGIVHDTLLQSYVFESHRPHDMDN 437 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ K E+ + + +Y D VT ++ + Sbjct: 438 LALRHLGIKTITYDEVTGKGAA----------RIGFEQVDIERAAQYAAEDADVTLQLHQ 487 Query: 174 RLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L K+ +L ++ + + G +D+ L T ++ + + L++ Sbjct: 488 HLYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQSRELGEKMLALEERA 547 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFN 278 ++ GL + ++++ LF L + T + + VL P A Sbjct: 548 CTIA-GLPFNLNSPKQIQEILFDRLKLPVMKKTPSGVPSTDEDVLQKLALDYPLA----- 601 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R L + G ++ P P R H Sbjct: 602 --------------------------RALLDYRGLAKLKSTYTDKLPRMVHPVTGRVHTN 635 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + +++P+ I +R IA G +++ AD + IE R++A ++ Sbjct: 636 YAQAVAVTGRLASNEPNLQNIPIRTAEGRRIREAFIAPSGYRIISADYSQIELRIMAHIS 695 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + LKAF GED++ T + F V V +QR K++ L Y +A+ Sbjct: 696 QDAGLLKAFAQGEDIHRATGSEIFGVPLETVNSEQRRYAKIINFGLIYGMSEF---GLAT 752 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + + ++ + ++ E+ + G + Sbjct: 753 QLGIERAAARTYMD--RYFSRYPGVADYMQRTRKTARENRYVETVFGRRL-----WLSEI 805 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 +S +A G A K + Sbjct: 806 NSSNGMRRQAAERAAINAPMQGTAADIIKLAMI--------------------------- 838 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 R + KL + VHDE+V Sbjct: 839 ---------EVHDWLRRHELRSKLV---------------------------MQVHDELV 862 Query: 634 CETPDTDEFNAS-MLYHLMT 652 E P+ + L LM Sbjct: 863 LEVPENEIETIKRELPLLMG 882 >gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS] Length = 904 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 117/659 (17%), Positives = 199/659 (30%), Gaps = 161/659 (24%) Query: 41 PVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI- 94 PV +P+ L+ LE+ + H++ ++ V N + + Sbjct: 363 PVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHV---FANEGVSLAGVAE 419 Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 T++ A + A + + ++L + K A Sbjct: 420 DTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQ----------IGFDEVAV 469 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALA 204 L G Y D T ++ + L P ++ E ++ + + G VD Sbjct: 470 PLAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQEL 529 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQ 260 + + E L+Q L G + ++L LF GL + T +T + Sbjct: 530 GRQSHKLGQEMLALEQRAYELA-GQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDE 588 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VLS + P + R G S+ Sbjct: 589 EVLSKLAQDYPLPQVLLEYR-------------------------------GLSKLKSTY 617 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375 P P R H Q +SDP+ I VR IA +G K Sbjct: 618 TDKLPRMISPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQG-K 676 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++ + +AF GED++ T + F V A+V +QR K + Sbjct: 677 LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAI 736 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y G +AS G+ + + ++ A + Sbjct: 737 NFGLIYGMGVF---GLASNLGITRDAAQAYIDRYFTRYP------GVARYMDDTRRLARD 787 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 ++ T R Sbjct: 788 QGYVETVFGR-------------------------------------------------- 797 Query: 556 NNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 L LP R+ R G R+ +N Q + D++ M Sbjct: 798 ---RLQLPDIRAASGPRRQGAERAAINAPM------------------QGTAADLIKMAM 836 Query: 615 ------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++A + +++ VHDE+V E PD + A L LM + +PL AE Sbjct: 837 VAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVAT--LRVPLVAE 893 >gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 933 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 99/591 (16%), Positives = 179/591 (30%), Gaps = 86/591 (14%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F P +L D L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQL-DRTQALA---QLAPLLT 415 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V + + ++ V++ + + + +L + + Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH---GVALAGYADDTLLESFVLNSGS----------ARHD 462 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 M+ + + K E + P + + Y D +T + + L P + Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLA 522 Query: 181 KEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E +L + I G CVD A + + Q+ L G Sbjct: 523 SEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 582 SFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 629 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L++ G ++ P P+ R H Q Sbjct: 630 -------------------RVILEYRGLAKLRSTYTDKLPEMVHPQSGRVHTSYHQAGAA 670 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 730 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE+G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 731 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A KR V + ++ ++L LV+ Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVNVDGWIANHAQRAKMILQVHDELVF 891 >gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 976 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 112/693 (16%), Positives = 201/693 (29%), Gaps = 168/693 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVMPQ-------- 55 +D ET S L D ++ F + +L H + Sbjct: 385 LDTETNSLNPL----------DAELVGIGFCLGEEINDLFYIPLSHQSQKKEMNQLAIED 434 Query: 56 ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 L+ +E+ + N F+R + +N + + +LA Sbjct: 435 VFFNLRSWIESPEKEKTLQNCKFDRQI---FYNHGLNLRGVTFDTLLADYILNNQ----- 486 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E LS E K T + +NK YC DV +T +I Sbjct: 487 -EKHGLSEISFREF------GFKPPTFKETVGKNKDFSFVDINDASTYCGYDVLLTFKIA 539 Query: 173 KRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 K + E L + + G +D + L+ + +++ Sbjct: 540 KIFKERFNNENKDLTKLFKEIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTLENIEE 599 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQ 275 + + + ++L LF + L + +T T VL + Sbjct: 600 NVFEIAK-QEFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPF 658 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R S+ P + R Sbjct: 659 LIKHR-------------------------------TLSKLLSTYIDALPNLISEKTGRV 687 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H +Q T +S+P+ I S +R + +G KL+ AD + IE R+LA Sbjct: 688 HTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYSQIELRILA 747 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A E+ + AF +D++ T F + D+R +GK + + Y G +K Sbjct: 748 HLANEEILINAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFGVIYGMG---IKK 802 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 A +TG++ + E + F E A+ ++ T R ++ Sbjct: 803 FARSTGVSTTEAKEFL--IKYKERYAKIFKFL----EFQERLALSKGYVETIFGRKRE-- 854 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 K DKN L ++ Sbjct: 855 ----------------------------------------FKFDKNGLGRLIGKDPY--- 871 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAGYD---- 623 + + L +Q S DI+ M+ K + Sbjct: 872 ----------EIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLEMNIP 921 Query: 624 --IVLTVHDEIVCET-PDTDEFNASMLYHLMTS 653 ++L VHDE++ E PD E ++ M Sbjct: 922 VKMLLQVHDELLFEVQPDFLEITKDLVKETMED 954 >gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39] Length = 959 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 106/633 (16%), Positives = 200/633 (31%), Gaps = 147/633 (23%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + ++ + + L+ LE+ + N+ F+R +L+ + I + + +LA Sbjct: 425 EMLNIEQVLEALRPILESEEYPKTLQNAKFDRLILR---SQGITLKGVVFDTMLASYIIN 481 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 P + + L+ + +L +++ L + K YC DV Sbjct: 482 PES------SHNLTDLSLRYLPDL---GIVAQSYSQLVPKGKTIADLDINTVANYCGLDV 532 Query: 166 TVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 T +I ++++ + EQ L + + +G +D + L+Q + Sbjct: 533 FTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGET 592 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKL 269 L++ G V + ++L LF L + +T T VL K Sbjct: 593 LDNLEKTSHQ-AAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHD 651 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + L++ S+ P Sbjct: 652 HPV-------------------------------INSILEYRTLSKLKSTYVDALPELVR 680 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384 R H + +Q IT +S P+ I S +R I G LV AD + I Sbjct: 681 SDTGRIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQI 740 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E+ ++A+ T +D++ T F+ +T ++R +GK++ + Y G Sbjct: 741 ELRILAHLSQEKVLIEAYNTNQDVHSLTAKLLFDR--DGITPEERRLGKIINFGVIYGMG 798 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A Q+ A G++ + + E+ AI ++ T Sbjct: 799 A---QRFAREVGVSATAGKQFID------RFNSQYPGVFEYLESQKLAAINQGYVETILG 849 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R + Y + K Sbjct: 850 RRR------------------------------------------YFEGLKG------RD 861 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KA 620 L Y+D R+ N + S DI+ M+ Sbjct: 862 RDRLNYQDEQMLRAAANAPIQ------------------GSSADIIKIAMIKLAEILKNY 903 Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMT 652 ++L VHDE+V E P ++ + M Sbjct: 904 QARLLLQVHDELVFEVPLSEWEELEYQIKSTME 936 >gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44] gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44] Length = 937 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 110/680 (16%), Positives = 206/680 (30%), Gaps = 166/680 (24%) Query: 28 VCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENTDVTIVAHNSYFER 77 ++ +F H +P+ L K LE+ + + +++ Sbjct: 377 ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDMDMVLARLKPWLEDAGKKKLGQHVKYDQ 436 Query: 78 TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 V N I + + T++ + AL+ S+ ++L C Sbjct: 437 HV---FANHGITVRGYAHDTMLQSYVLEADRPHNLTSLALRHVSRSGISYEDL----CGK 489 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ------ 190 ++ P + + Y D T ++ L P L ++ + Sbjct: 490 GKNQI------PFAQVSVDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYELEMQTS 543 Query: 191 ----TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 I G +D + + KL++E + G + ++L F + Sbjct: 544 EALFRIERNGVSIDAGELARQSNDLGARILKLEEEAYEIA-GQPFNLSSPKQLGEIFFDK 602 Query: 247 TGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 G+ + T T T + VL + P ++ +R Sbjct: 603 LGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRSL-------------------- 642 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 S+ LP R H Q + ++DP+ I Sbjct: 643 -----------SKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRLSSNDPNLQNIPVR 691 Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 VR +A EGK + AD + IE R++A ++G++ L AF+ G D++ T A F Sbjct: 692 TPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVF 751 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V+ +V+ +QR KV+ L Y + +A G+ A + Sbjct: 752 GVSVDEVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAAAAYID---------- 798 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + R + + Q E G Sbjct: 799 ----------------------------------KYFQRYPGVKRYMDQTVELAHAQGYV 824 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGK 596 RR L+LP R R+ +N Sbjct: 825 ETVFGRR---------------LVLPEINGGNGPRKKAAERAAINAPM------------ 857 Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649 Q + D++ + M+ K +++ VHDE+V E P++ ++ + + Sbjct: 858 ------QGTAADLIKKAMVAVQARLDTEKPEVLVIMQVHDELVFELPESARDWVQAEIPA 911 Query: 650 LMTSNPSWAKGLPLKAE-GY 668 +M +PL AE G+ Sbjct: 912 IMAGVAD--LSVPLLAEIGF 929 >gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] Length = 959 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 85/568 (14%), Positives = 168/568 (29%), Gaps = 82/568 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----LKEALENTDVTIVA 70 D G + P E W + ++ + + + Sbjct: 393 DTETTGFDI----FNDRIVGLSLAVRPYEAWYIPFNESNTAEYAALIRPLFADGKIAKIG 448 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N F+ VL ++I R T++L S A++ + + LI Sbjct: 449 QNIKFDLMVLAR-LGVEIR-GRLYDTMILHYLLDPESRHNMDALAMRYLNYRPISITSLI 506 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LSS 180 + R + EY D VT + + L P Sbjct: 507 GKGA----------RQLTMDMISLERVAEYAAEDADVTLRLKQVLWPKVEELDLAGLYLE 556 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E+ + + I G +D ++ L+ ++ L + +L Sbjct: 557 IEEPMIAVLAEIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRRLADEPSLNVNSARQLG 616 Query: 241 TWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF + + +T+T T + L + ++ R Sbjct: 617 EVLFGKLRIAEKPKMTKTKQFSTEEEYLQTFAHKYEIVDKILEYR--------------- 661 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 G + P P + H +Q +T +++P+ Sbjct: 662 ----------------GVKKLLSTYVEALPLLVNPVTGKIHTSFNQAVTATGRLSSTNPN 705 Query: 356 PLQI-----ISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I + +R I S+ L+ AD + +E R++A ++G++ + AFE GED++ Sbjct: 706 LQNIPVRDELGRRIRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLIAAFEHGEDVH 765 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T AR F A+V D+R K + Y A + + +++ Sbjct: 766 AATAARLFGKEVAEVDSDERRKAKTANFGIIYGISAFGLSQ---RLDIPRKEAKEIIEGY 822 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + + E A D ++ T R ++ SR + + Sbjct: 823 FASYPK------VKEYMDRVVEEAKRDGYVSTIFGR-RRYLNDIASRNAVARGLAERNAV 875 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNN 557 G A K + + +++ Sbjct: 876 NAPIQGSAADIMKIAMIRVSRRFREEGI 903 >gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] Length = 924 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 99/610 (16%), Positives = 176/610 (28%), Gaps = 90/610 (14%) Query: 12 SPIDLTKCGICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLKE 59 +D G+ + H V+L D + P MP ++L+ Sbjct: 344 CAVDTETDGLDPLTAPLVGISLAPQCGRACYIPLGHQVDLMDSLGTPQMPVGTALEILEP 403 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 + V V N+ F+ VL ++ T++++ + + + E +L+ Sbjct: 404 LFADPSVLKVFQNAKFDLLVLTQAGSVQ--PAPIDDTMLISYAQSAGQHGQGMDELSRLT 461 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLEP- 177 RN+ + Y D VT +++ L P Sbjct: 462 LDHSPI----------PYDEVTGTGRNRVVFSQVDIARATPYAAEDADVTLRLWQVLRPR 511 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E+ L + + G VD ++ ++ E+ L G Sbjct: 512 LRTSRALALYEEMERPLIPILADMERAGIAVDADDLRAMSIEFAQRMGVIEAEIHKLA-G 570 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRA 283 + ++L LF E GL T+ T VL ++ R A Sbjct: 571 REFNVGSPKQLGEILFDEMGLPGGKRTKAGAWGTDSSVLQDLADQGHDLPARILAWRQLA 630 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + Q P R H + Sbjct: 631 -------------------------------KLKSTYADALLNQINPATGRVHTSFQMAV 659 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T ++DP+ I +R +A+ G LV AD + IE R+LA +A Sbjct: 660 TTTGRLSSNDPNLQNIPIRTEEGGRIRRAFVAAPGHLLVSADYSQIELRLLADVANIPAL 719 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF G+D++ T + F + + R K + + Y A + G+ Sbjct: 720 REAFALGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAF---GLGRQLGIP 776 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKHSRV 517 + A R E A ++ T R + W + Sbjct: 777 PGEARGYIDAYFARYP------GIRDYMERVKAEARAKGYVTTPFGR--RCWVPGIADKS 828 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNN 576 + N + G A KR V + D + ++L LV+ ++ Sbjct: 829 AVRRNYAERQAINAPLQGGAADIIKRAMVRIPAALSDAGLDGRMLLQVHDELVFEVRKDD 888 Query: 577 RSYLNTTTRQ 586 L RQ Sbjct: 889 ADRLAALVRQ 898 >gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118] gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118] Length = 933 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 99/591 (16%), Positives = 178/591 (30%), Gaps = 86/591 (14%) Query: 7 DFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F P +L D L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQL-DRTQALA---QLAPLLT 415 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V + + ++ V++ + + + +L + + Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH---GVALAGYADDTLLESFVLNSGS----------ARHD 462 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 M+ + + K E + P + + Y D +T + + L P + Sbjct: 463 MDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLA 522 Query: 181 KE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + I G CVD A + + Q+ L G Sbjct: 523 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 581 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 582 SFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 629 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L++ G ++ P P+ R H Q Sbjct: 630 -------------------RVILEYRGLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 670 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 671 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 730 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE+G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 731 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 787 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 788 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 840 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A KR V + ++ ++L LV+ Sbjct: 841 RAGAERAAINAPMQGTAADIIKRAMVNVDGWIANHAQRAKMILQVHDELVF 891 >gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328] gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328] Length = 945 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 110/629 (17%), Positives = 203/629 (32%), Gaps = 148/629 (23%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 + V+P L+ LE+ + N+ F+R +L+ + I + + +LA P + Sbjct: 416 EEVLPA-LRPILESENYPKTLQNAKFDRLILR---SQGITLKGVVFDTMLASYVINPES- 470 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + L+ + +L +++ L + K YC DV T Sbjct: 471 -----SHNLTDLSLRYLPDL---GIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTF 522 Query: 170 EIFKRL-------EPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 +I +++ PL+ EQ L + + +G +D + L++ + L Sbjct: 523 QITQKMQDILKDVPPLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSKQLGETLESL 582 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQA 273 ++ G V + ++L LF L + +T T VL K P Sbjct: 583 EKASHQ-AAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPV- 640 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + L++ S+ P Sbjct: 641 ------------------------------INYILEYRTLSKLKSTYVDALPELVRSDTG 670 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H + +Q IT +S P+ I S +R I G LV AD + IE R+ Sbjct: 671 RIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRI 730 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ E+ ++A+ T +D++ T F+ ++T D+R +GK++ + Y G+ Sbjct: 731 LAHLSQEKMLIEAYNTNQDVHSLTAQLLFDK--DEITADERRLGKIINFGVIYGMGS--- 785 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 Q+ A G++ + + E+ AI ++ T R Sbjct: 786 QRFAREVGVSATAGKQFID------RFNSQYPGVFEYLESQKLAAINQGYVETILGR--- 836 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 +++ R R L Sbjct: 837 -----------------------RRYFESLKGRDR----------------------DRL 851 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDI 624 Y+D R+ N + S DI+ M+ + Sbjct: 852 NYQDEQMLRAAANAPIQ------------------GSSADIIKIAMIKLAEILKNYQARL 893 Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMT 652 +L VHDE+V E P ++ E + M Sbjct: 894 LLQVHDELVFEVPLSEWEELQHQIKSTME 922 >gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1] gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1] Length = 937 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 109/680 (16%), Positives = 205/680 (30%), Gaps = 166/680 (24%) Query: 28 VCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENTDVTIVAHNSYFER 77 ++ +F H +P+ L + LE+ + + +++ Sbjct: 377 ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDLDKVLARLRPWLEDASRKKLGQHVKYDQ 436 Query: 78 TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 V N I + + T++ + AL+ ++ ++L C Sbjct: 437 HV---FANHGITVRGYAHDTMLQSYVLEADRPHNLTSLALRHVNRSGISYEDL----CGK 489 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ------ 190 + P + Y D T ++ L P L ++ + Sbjct: 490 GKSQI------PFAQVPVDKAAAYSCEDSDQTLDVHNTLWPRIQVHAGLLHIYELEMQTS 543 Query: 191 ----TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 I G +D + + KL++E + G + ++L F + Sbjct: 544 EALFRIERNGVSIDAGELARQSNDLGARILKLEEEAYEIA-GQPFNLSSPKQLGEIFFDK 602 Query: 247 TGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 G+ + T T T + VL + P ++ +R Sbjct: 603 LGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRSL-------------------- 642 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 S+ LP R H Q + ++DP+ I Sbjct: 643 -----------SKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRLSSNDPNLQNIPVR 691 Query: 361 ---SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 VR +A EGK + AD + IE R++A ++G++ L AF+ G D++ T A F Sbjct: 692 TPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVF 751 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V+ +V+ +QR KV+ L Y + +A G+ A + Sbjct: 752 GVSVDEVSSEQRRYAKVINFGLIYGMSSF---GLAKNLGIETKAAAAYID---------- 798 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + R + + Q E G Sbjct: 799 ----------------------------------KYFQRYPGVKRYMDQTVELAHAQGYV 824 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTREYTYGGK 596 RR L+LP R R+ +N Sbjct: 825 ETVFGRR---------------LVLPEINGGNGPRKKAAERAAINAPM------------ 857 Query: 597 LTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649 Q + D++ + M ++A K +++ VHDE+V E P+ ++ + + Sbjct: 858 ------QGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAEIPA 911 Query: 650 LMTSNPSWAKGLPLKAE-GY 668 +M +PL AE G+ Sbjct: 912 IMAGVAD--LSVPLLAEIGF 929 >gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001] gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001] Length = 965 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 109/698 (15%), Positives = 208/698 (29%), Gaps = 170/698 (24%) Query: 12 SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL---------- 61 +D G+ A + ++ F+ H+ + E L Sbjct: 384 CAVDTETDGLDPLAAN--IVGFSIATAPGKACYVPLKHEGTLEAPTGEQLAVDAALKLLA 441 Query: 62 ---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 ++ V + HN+ F+ +L + + + +L ++ L Sbjct: 442 PLLQDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLISY----------SQSAGL 490 Query: 119 SSQKMEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 Q M+E L ++ P + +Y D VT ++ L Sbjct: 491 HGQGMDELSNLHLNHTPITYDSVTGTGRNRVPFAQVPVETATKYAAEDADVTLRLWYVLH 550 Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E+ L + + G VD L++ + ++ ++ Sbjct: 551 PTLRTNKALALYEQIERPLSVILADMEKAGIAVDRTELDRLSKDFEARMQGMENDIYE-A 609 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFNNRM 281 G + ++L LF E GL + +T VL ++ R Sbjct: 610 AGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQGHDLPARILAWRQ 669 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A + + L+ D R+ H Sbjct: 670 LAKLKSTYT-DALLRQAGRDDRV-------------------------------HTSFQM 697 Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 IT ++DP+ I +R IA GKKL+ AD + IE R+LA +A Sbjct: 698 AITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPSGKKLISADYSQIELRLLADVANIP 757 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF+ G+D++ T + FN+ + R K + + Y A + G Sbjct: 758 ALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAF---GLGKQLG 814 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + +R Sbjct: 815 IPAGEARTYID--------------------------------------------AYFAR 830 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + + E+ +G ++ P GR + Sbjct: 831 YPGIRDYMERMREEARTHG-----------------------YVLTPFGRRCYVPGIHEK 867 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM----MNATKAGY---DIVLTVH 629 + R+Y + +Q + DI+ M + KAG+ ++L VH Sbjct: 868 SAA--------RRQYAER-QAINAPLQGGAADIIKRAMVHLPLALQKAGFGATRMLLQVH 918 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE++ ET ++D E A ++ ++M + A +PL E Sbjct: 919 DELLFETDESDAEAVAEIIKNVMEAAADLA--VPLVVE 954 >gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03] gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07] gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22] gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26] gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32] gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12] Length = 933 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 110/698 (15%), Positives = 209/698 (29%), Gaps = 170/698 (24%) Query: 12 SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL---------- 61 +D G+ A + ++ F+ H+ + E L Sbjct: 352 CAVDTETDGLDPLAAN--IVGFSIATAPGKACYVPLKHEGTLEAPTGEQLAVDAALKLLA 409 Query: 62 ---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 ++ V + HN+ F+ +L + + + +L ++ L Sbjct: 410 PLLQDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLISY----------SQSAGL 458 Query: 119 SSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 Q M+E L ++ P + +Y D VT ++ L Sbjct: 459 HGQGMDELSAMHLSHTPISYDSVTGTGRNRLPFAQVPVATATKYAAEDADVTLRLWHVLH 518 Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E+ L + + G VD A L++ + ++ ++ Sbjct: 519 PTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRLSKDFEARMQGMENDIYE-A 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL-TPQAIQVFNNRM 281 G + ++L LF E GL + +T VL ++ R Sbjct: 578 AGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQGHDLPARILAWRQ 637 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A + R +G R R H Sbjct: 638 LAKLKSTYT-----------------------DALLRQAG---------RNDRVHTSFQM 665 Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 IT ++DP+ I +R IA GKKL+ AD + IE R+LA +A Sbjct: 666 AITSTGRLSSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQIELRLLADVANIP 725 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF+ G+D++ T + FN+ + R K + + Y A + G Sbjct: 726 ALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAF---GLGKQLG 782 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + +R Sbjct: 783 IPAGEARTYID--------------------------------------------AYFAR 798 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + + E+ +G ++ P GR + Sbjct: 799 YPGIRDYMERMREEARTHG-----------------------YVLTPFGRRCYVPGIHEK 835 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM----MNATKAGY---DIVLTVH 629 + R+Y + +Q + DI+ M + KAG+ ++L VH Sbjct: 836 SAA--------RRQYAER-QAINAPLQGGAADIIKRAMVHLPLALQKAGFGETRMLLQVH 886 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE++ ET +++ E A+++ ++M + A +PL E Sbjct: 887 DELLFETDESEAEAVAAIIKNVMEAAADLA--VPLVVE 922 >gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419] gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419] Length = 1004 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 192/635 (30%), Gaps = 142/635 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115 LKE LE+ + VA N + V+K + + + T++++ A A Sbjct: 478 LKELLEDPSILKVAQNLKYGYLVMKRH---GVTMQGFDDTMLISYVLDAGNGAHGMESLA 534 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K + + Y D + ++ L Sbjct: 535 ERWLGHTPIASKGI----------TGSGRSSLTIDFVDIDKAAAYSAEDADIALRLWHVL 584 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ L + + +RG VD + L+ + L+ E+ L Sbjct: 585 KPRLTARGLTRVYERLERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDEIYRL 644 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNR 280 G + ++L LF + GL T+T T +VL ++ + R Sbjct: 645 A-GETFTIGSPKQLGDILFGKLGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWR 703 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 ++ P P R H Sbjct: 704 QL-------------------------------TKLKSTYTDALPGFVHPETKRVHTCFA 732 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T +SDP+ I +R+ +A+ G KLV AD + IE RVLA +A Sbjct: 733 LAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADI 792 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G D++ T + F V + + R K + + Y A +A+ Sbjct: 793 PQLRQAFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINFGIIYGISAF---GLANQL 849 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + + + E P R Sbjct: 850 SIERSEAGD----------------YIKRYFERFP------------------GIRDYME 875 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + +TI +A R PS R+ N Sbjct: 876 NTKTF--ARENGYVETIFGRRAHYPDIRSSN----------------PSMRAF------N 911 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ +N + G + I +A+ + E + A K ++L VHDE++ E Sbjct: 912 ERASINAPIQ---------GSAADIIRRAMVK---MEPALEAAKLSARMLLQVHDELIFE 959 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + + E ++ +M + A + PLK + Sbjct: 960 VEEGEIERTIPVIVSVMENAAMPALDMRVPLKVDA 994 >gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1] gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1] Length = 893 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 102/609 (16%), Positives = 189/609 (31%), Gaps = 100/609 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQ 55 ID ET S + + P E + + V+ + Sbjct: 322 IDLETSS------------LDPFECDIAGISLSFKPKEAYYIPLHHRNAQNLDEKEVL-K 368 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 LKE LE+ IV N F+ VL +P ++A P Sbjct: 369 KLKEILEDPGAKIVGQNLKFDYKVLMVKGIEPVPP---HFDTMIAAYLIEPNEKKFNLDD 425 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK KM +EL++ F D Y D +T ++K Sbjct: 426 LALKFLGYKMTSYQELMS-FSSPLFGFSFVD-------VPLEKAANYSCEDADITYRLYK 477 Query: 174 RLE-PLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L L E L + + G VD L++ + +L +E+ Sbjct: 478 TLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIY 537 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFN 278 + G + +++ LF + G+ T T VL + Sbjct: 538 RIA-GEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE 596 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + P P+ R H Sbjct: 597 -------------------------------YRKIQKLKSTYIDALPKMVNPKTGRIHAS 625 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392 +Q T +SDP+ + +R ++ +V AD + IE R+LA + Sbjct: 626 FNQTGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHL 685 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L+AFE G D++ T +R FNV P +VT++ R GK++ ++ Y Sbjct: 686 SGDENLLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV-- 743 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + ++ + + ++ + + E G + + R Sbjct: 744 -RLGVPVKEAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARD 800 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571 ++++ + T G A K + + K++ +++ LV+ Sbjct: 801 RNTQAEG-----ERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFE 855 Query: 572 DVGNNRSYL 580 + L Sbjct: 856 VPNEEKDAL 864 >gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180] gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180] Length = 911 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 98/582 (16%), Positives = 176/582 (30%), Gaps = 78/582 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D + A ++ +F + H P P L K LE+ Sbjct: 338 DTETTALD--AMQAELVGVSFALEPGRAAYVPLAHVYPGAPDQLDRDRVLARLKPLLEDP 395 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKM 123 V N ++ +VL DI + TL+ + + A + Sbjct: 396 GRPKVGQNLKYDMSVLARY---DIALRGIAHDTLLESYVLDSTARHDLDSLAKRFLDHDT 452 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179 +++ + K + + G Y D VT + + +P Sbjct: 453 IRFEDVAGKGAKQIGFDQV----------PLEQAGPYAAEDAEVTLRLHRVFQPRLAAVP 502 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + + G +D A T + + + +L++ + G + Sbjct: 503 ALERLYREIEMPLVPVLSRLERAGVLIDSARLATQSAELARKILELEESAYRVA-GRRFN 561 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +++ F E GL + T + Sbjct: 562 LGSPKQIGAIFFDELGLPVVAKTPKGAPSTSEDVLERLAAEGHELP-------------- 607 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 R L G S+ P R H Q +T +S Sbjct: 608 ------------RIILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAVTATGRLSSS 655 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 DP+ I +R IA+ G +L+ AD + IE R++A ++G++ L AF G+D Sbjct: 656 DPNLQNIPIRTEEGRRIRRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQD 715 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T A +AP VT +QR K + L Y A +A G+ V Sbjct: 716 IHRATAAEILGLAPEDVTGEQRRSAKAINFGLIYGMSAF---GLARQLGIERGAAQEYVD 772 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 E + +F + E D ++ T R H + A Sbjct: 773 --RYFERYPGVRDFMDRTRRQVRE----DGYVETLFGRRLHLPEIGHGNQARRAAAERTA 826 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 ++ A I ++ +++ ++ L+L LV Sbjct: 827 INAPMQGTAADIIKRAMIAVDAWIEAEQPAARLILQVHDELV 868 >gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] Length = 936 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 107/677 (15%), Positives = 192/677 (28%), Gaps = 169/677 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFG--FDDHPVELWDCVHDP----VMPQVLK 58 ID ET S L + P L+ Sbjct: 366 SIDTETTS------------LNTFEAELVGISICWKPGEAYFIHFTDKELSAKTFPGKLQ 413 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 + LEN D+ N ++ VLK N + + +LA P E L Sbjct: 414 DVLENPDIKKTGQNLKYDILVLK---NHHVRLAPVGFDTMLASYVINPE------EKHNL 464 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K L R + P Y D V ++ ++ + L Sbjct: 465 D---DLAKKHLNHRTITYSELTGTGKKAIPIREVPIDRLTVYACQDADVALQLEQKQKIL 521 Query: 179 SSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + E L + + G +D A + V+ + +L + + T Sbjct: 522 LGENSELEQLCVNIEFPLVEVLADMEYLGIALDTAQLERTAETVNRQLLELTERIYD-TA 580 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRAS 284 G + + ++L LF GL + T+T +VL + P A + Sbjct: 581 GTIFNIDSPKQLGNVLFNVLGLPAKKTTKTGFSTNVQVLEDLSLIHPVAKDLLE------ 634 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + P P+ R H +Q IT Sbjct: 635 -------------------------YRSLQKLKTTYIDALPKILNPKTGRVHTSFNQHIT 669 Query: 345 HLPTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398 +S+P+ I + +R I S + L+ AD + IE R+ A ++ + Sbjct: 670 ATGRLSSSNPNLQNIPIRTPLGREIRKAFIPSTSDRYLLSADYSQIELRIAAEISQDSHL 729 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF ED++ T F+ +TKD R K + + Y +A ++ Sbjct: 730 IDAFRNREDIHTATAKTIFDT--DDITKDMRRKAKEVNFGVLYGIQPY---GLAQRLNIS 784 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ T S+ Sbjct: 785 QKEAKAIIDTYI--------------------------------------------SKYP 800 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L++ L + E G RR +++N + R+ Sbjct: 801 GLFSALQTTITEAAEKGYVTTLTGRRRYIENLRSRNRNIRMAA--------------ERA 846 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEI 632 +NT +Q + DI+ M + + ++L VHDE+ Sbjct: 847 AMNTP------------------IQGTAADIIKCAMGLVSEAIKKKRMQSAMLLQVHDEL 888 Query: 633 VCETPDTDEFNASMLYH 649 V ET + ++ + + Sbjct: 889 VFETTEEEKAALAEIAE 905 >gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] Length = 1036 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 108/682 (15%), Positives = 205/682 (30%), Gaps = 158/682 (23%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQVLKEALENTDVTI 68 D G+ ++ DH W D + ++ + +K ++ + Sbjct: 472 DTETTGLD--VRSATIVGLGLAIRDH--HAWYIPFNSDLDKEEIL-KEIKPFFADSSLKF 526 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEG 126 A N+ F+ +L I + ++A PS +L + + Sbjct: 527 FAQNAKFDLQMLH---YAGIEVKNIDFDTLVASFICNPSRQFHDLDSLSLHYLNYRKIST 583 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--------- 177 + LI + K + + P YC DV +T + LE Sbjct: 584 ESLIGKGKK-----QISMADLPV-----ERVATYCCEDVDITLRLRNELEAELHRRDLRN 633 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + L + + + G +++ ++ E K ++++ +L G + Sbjct: 634 LFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFSAELKKCEEQIHALA-GHEFNINSP 692 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 +++ LF E GL T T + L ++ V Sbjct: 693 KQVGVVLFEEMGLKAGKKTATGYSTSAEVLENLAAESEIV-------------------- 732 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 R L+ S+ P + R H Q ++ P+ Sbjct: 733 --------RAILRHRTLSKLISTYADALPKEVSELDQRIHTRFSQTTAATGRLASTQPNL 784 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +RS A EG + D + IE R++A ++ + L+AF D++ Sbjct: 785 QNIPTRTAEGKSIRSAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLEAFNNDFDVHTH 844 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F ++VTK QR K + + + G K Sbjct: 845 TASLVFETELSEVTKQQRYAAKAVNFGIMFGQGPYGLAKE-------------------- 884 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 IG + + K+ R ++ + + E Sbjct: 885 ---------------------------IGVSADEAKQFISNYFKRYPDVQKFMAKCVEDA 917 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + G + + RR L ML S G R +N+ Sbjct: 918 RDKGYSETSFGRRRY-----------LPEMLSSN---GRIRSGAERISVNSP-------- 955 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNA 644 +Q + DI+ M+ ++L +HDE++ E PD + E Sbjct: 956 ----------IQGTAADIIKIAMIKVADELEKRQLKSKMLLQIHDELLFEVPDDELEIMK 1005 Query: 645 SMLYHLMTSNPSWAKGLPLKAE 666 ++ +MT P +PLK + Sbjct: 1006 ELIPQIMTDIPQ--IKVPLKVD 1025 >gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205] gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205] Length = 921 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 121/683 (17%), Positives = 212/683 (31%), Gaps = 167/683 (24%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---- 57 ID ET + +D + AE ++ F+ FD + HD P+ L Sbjct: 348 HFAIDTET-TNLD------YRVAE---LVGFSIAFDANEAYYVPLAHDYEGAPEQLSREQ 397 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110 K LEN V + H+ ++ + N I I W +LA +A Sbjct: 398 VLAQIKPILENEQVKKIGHHLKYDAHI---FANHGIIIQGWYFDTMLASYVLNAAATRHG 454 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A S +++ + K +T + + Y D VT Sbjct: 455 MDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI----------ELEVAAHYAAEDAHVTYR 504 Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ L L + E + + + + G +D L+ L+ Sbjct: 505 LYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVEFSDTMQTLE 564 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + L G + +++ LF + G+ + T S+++ + + Sbjct: 565 NQATELA-GETFNIASPKQVGEVLFDKLGI---KGGKKTATGQYSTSESILEKIEHPLAE 620 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L+ G ++ Q+ R H Sbjct: 621 --------------------------VILEHRGLAKLKNTYTDRLVEQSHDATHRVHTSY 654 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q +T ++DP+ I I +R IA EG+ L+ AD + IE R++A + Sbjct: 655 HQALTATGRLSSTDPNLQNIPIRTPIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQ 714 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF+ G+D++ T A +A VT DQR K + L Y G F + Sbjct: 715 DDALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY--GMSEF-GLTRQ 771 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G E++ ++ + +P + ER ++ R Sbjct: 772 LGFTR----------------EESRSYIARYFQRYP-------GVLDYMERTRQIAR--- 805 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 Q F +TI GR L D+ Sbjct: 806 ----------EQGFVETIL-------------------------------GRRLYTPDI- 823 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 N +Q L Q + DI+ M+ K ++L VHD Sbjct: 824 ---LATNKMIKQAAERAAINAPL-----QGSAADIIKLAMIAVDKILPKDQAKLLLQVHD 875 Query: 631 EIVCETP--DTDEFNASMLYHLM 651 E+V E DE + + +M Sbjct: 876 ELVFEADVAIADELS-KQIADVM 897 >gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4] gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4] Length = 917 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 121/699 (17%), Positives = 212/699 (30%), Gaps = 166/699 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID + D + ++ +F + H P +P+ L Sbjct: 336 IDAAALTAFDTETTSLDP--MTARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDDVLA 393 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 K LE D V + ++ VL N DI ++ TL+ + Sbjct: 394 RLKPWLEAADRKKVGQHLKYDAQVLA---NYDIALNGIEHDTLLESYVLESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K + +++ + K A Y D +T ++ Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQ----------IGFDEVALDQAAAYAAEDADITLQLHHV 500 Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P ++E L + + I G +D AL H + + +L+ + Sbjct: 501 LYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEIATRLIELEGQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + +T + VL + P + + Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P P R H Sbjct: 620 R-------------------------------GLSKLKSTYTDKLPRMVNPATGRVHTNY 648 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + +++P+ I +R IAS G ++V AD + IE R++A ++G Sbjct: 649 AQAVAVTGRLASNEPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISG 708 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF GED++ T A F V P +V DQR I KV+ L Y A +AS Sbjct: 709 DASLLRAFAHGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 765 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + A + Sbjct: 766 LGITRDAAKLYIDRYFAR-----------------------------------------Y 784 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V++ + A + + + R+ L LP Sbjct: 785 PGVAQYMEDTRAAAKDQ-GYVETVFGRR-----------------LWLP----------- 815 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 + N RQ +Q + D++ M+ + +++ V Sbjct: 816 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQV 869 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E PD + L +M +PL AE Sbjct: 870 HDELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAE 906 >gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205] gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205] Length = 923 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 91/609 (14%), Positives = 182/609 (29%), Gaps = 94/609 (15%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDP--VMPQVLKE 59 L +D ET S + D ++ +F + + + + K Sbjct: 353 LSLDTETTSTTAI----------DAELVGLSFAVKEKEAFYVAIPANREEALKIVNIFKP 402 Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEAL 116 EN ++ V N ++ VL N I I + +LA P + + E Sbjct: 403 LYENPEILKVGQNIKYDYEVL---INYGIEIQGKMFDTMLAHYLIQPELYHNMDYLAEV- 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + +ELI + R+ EY D +T + LE Sbjct: 459 -FLNYQTIHIEELIG----PKGKNQKSMRDLAPSD-----IYEYAAEDADITLRLKNVLE 508 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E L + + G C+D ++ + +++ + L Sbjct: 509 SKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDTDTLKETSENLTNRLNEIEHHIYELA 568 Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++ LF + + T+T T + VL + +P ++ Sbjct: 569 -GESFNIASPRQVGEILFGKMKIVEKPKKTKTGQYVTSEEVLQQLRSKSPIIDEIL---- 623 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + G + P R H +Q Sbjct: 624 ---------------------------NYRGLKKLLGTYIDALPKLINSRTGHIHASFNQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 IT +SDP+ I +R C I G AD + IE R++A ++ + Sbjct: 657 AITATGRLSSSDPNLQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDP 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF G D++ T A+ ++ +VT QR K + Y +A Sbjct: 717 NMVEAFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIYGITTF---GLAQRMN 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + ++ E++ + E E A E + T R ++ +S+ Sbjct: 774 IENREAKQII------EDYFRTFPGVQAYMEKAKEMAREKGYAETLFHR-RRYLPDINSK 826 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGN 575 + + G K + + + + +++ L + Sbjct: 827 NGTVRGFAERNAINAPIQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELNFSVYPE 886 Query: 576 NRSYLNTTT 584 + + Sbjct: 887 EKEKVEKIV 895 >gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421] gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421] Length = 938 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 102/536 (19%), Positives = 176/536 (32%), Gaps = 83/536 (15%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115 L ++ + V N+ ++ VL+ N + + +LA P + A Sbjct: 422 LTPYWQDRERPKVLQNAKYDWLVLR---NYGVALAGIAFDPMLASYVLDPEGKHNLMTLA 478 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---- 171 M + L+ + + YC D VT + Sbjct: 479 QNHLQITMGSYEALVP-------------KGQTIDAVEIAAVSRYCGEDAAVTLRLVPVL 525 Query: 172 FKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +L+ E L + + +RG +D A L Q +D + L+QE + Sbjct: 526 QAKLDEDPRLAGIFKEIEVPLEPVLARMEERGIRIDKAYLGELAQELDRDLESLEQEAYT 585 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L LF + GL + +T T VL + P + + Sbjct: 586 LA-GSKFNLGSPKQLSDLLFNKLGLSAKKSRKTSLGYSTDAAVLEKLRDDHPIVEAILSY 644 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R A + P PR R H + Sbjct: 645 RTLA-------------------------------KLKSTYVDALPLLVDPRTDRVHTDF 673 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q +T +S+P+ I S +R + G LV AD + IE R+LA + Sbjct: 674 NQTVTTTGRLSSSNPNLQNIPVRTSFSRRIRRAFVPEPGWLLVAADYSQIELRILAHLTQ 733 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 E L+AF+TG D++ T +VT ++R + K++ + Y GA ++ A Sbjct: 734 EPVLLEAFQTGGDVHTLTARLLLGR--EEVTSEERRLAKIINYGVVYGMGA---RRFARE 788 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 TG++ +K + F E A+E ++ T R ++ +R Sbjct: 789 TGVSATEAEDFIKAFY--RRYPAVFGF----MEQTRRMAVEQGYVETLLGR-RRYFRGLG 841 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +A G A K V L + L+L LV+ Sbjct: 842 QLNQRDREGALRAAFNAPIQGTAADIIKIAMVRLEQTLAGRRT-RLLLQVHDELVF 896 >gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] Length = 953 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 96/603 (15%), Positives = 187/603 (31%), Gaps = 92/603 (15%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------VMPQVLKEALENTDV 66 ID G E + L F D + + P + L+ EN Sbjct: 384 SIDTETTGT----EPMEAELVGMSFSDAENKGYYVPVPPNREEALKIINELRPLYENEKS 439 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKM 123 V N ++ VL+ N + + + +LA P + + E + Sbjct: 440 LKVGQNIKYDMIVLQ---NYGVQVRGALFDTMLAHYVLQPELRHNMDYLAEIYLH--YQT 494 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179 ELI K + + R+ P Y D +T ++ LE Sbjct: 495 IHIDELIGAKGKNQKN----MRDLPAED-----VYRYACEDADITLKLKNVLEKELKEQG 545 Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L + I G +D ++ V ++++ + L G + Sbjct: 546 AEHLFYEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIYELA-GETFNI 604 Query: 234 RCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 +++ LF + + T+T T + VL S + ++ R Sbjct: 605 GSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRGKHAVIGKILEYR-------- 656 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 G + P R R H +Q +T Sbjct: 657 -----------------------GLKKLLSTYIDALPQLINSRTGRIHTSFNQAVTSTGR 693 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +S+P+ I +R I +G + AD + IE R++A ++ ++ + AF Sbjct: 694 LSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMIDAFL 753 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +G D++ T A+ + + +VT D R K + Y +A ++ Sbjct: 754 SGHDIHAATAAKIYKIDIEEVTSDMRRKAKTANFGIIYGISVF---GLAERLNVSRQEAK 810 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L+ + + + + + A E+ ++ T R K+ +SR + + Sbjct: 811 ELIDG------YFETYPQVKEYMDKSIQVARENGYVETIFHR-KRFLPDINSRNAVVRGY 863 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLN 581 + G A K +Y + N L ++L L + + + + Sbjct: 864 AERNAINAPIQGSAADIIKVAMAH-IYQRITSNKLKAKMILQVHDELNFSVPASEKELVQ 922 Query: 582 TTT 584 Sbjct: 923 QIV 925 >gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3] gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3] Length = 995 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 108/634 (17%), Positives = 198/634 (31%), Gaps = 140/634 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ V +A N ++ ++K + + + T++++ L+A Sbjct: 469 LKDLLEDEAVLKIAQNLKYDYLLMKRH---GVVMQSFDDTMLISYV------LEAGKTTH 519 Query: 117 KLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + G IA + + Y D VT ++ L Sbjct: 520 GMDTLSERWLGHTPIAY----KDVAGSGKSSITFDFVDIDKATAYAAEDADVTLRLWMVL 575 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ L + + +RG VD + L+ + + ++E+ L Sbjct: 576 KPRLAAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEEEVYQL 635 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF GL T+T T +VL + Sbjct: 636 A-GERFNIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQVLEDLAAEGAELP------- 687 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R + + ++ P P+ R H Sbjct: 688 -----------------------RKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYAL 724 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T +S+P+ I +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 725 ASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIP 784 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 AFE G D++ T + F V + + R K + + Y A S Sbjct: 785 QLRSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIAR 844 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 +A + + E P R Sbjct: 845 -------------------SEAGEYIKKYFERFP------------------GIRDYMEA 867 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + +TI +A R PS ++ N Sbjct: 868 TKAF--ARENGYVETIFGRRAHYPEIRSSN----------------PSMKAF------NE 903 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 R+ +N + G + I +A+ R E ++ A K ++L VHDE++ E Sbjct: 904 RAAINAPIQ---------GSAADIIRRAMVR---IEPVLEAEKLSARMLLQVHDELIFEV 951 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 + + E ++ +M + A + PLK + Sbjct: 952 EEGEIEKTLPIVVSVMENAAMPAISMRVPLKVDA 985 >gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] Length = 1003 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 114/654 (17%), Positives = 208/654 (31%), Gaps = 136/654 (20%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 LFA G D +E + + L LE+ V + F +L +I + Sbjct: 458 LFASGLADGQIEA------AKVLETLTALLESEAVLKTGFDIKFAAVLLAQH---NITLR 508 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 +++ + + + L+ Q + G E+IA + +R + Sbjct: 509 TVDDVQLMSYALDAGRSSHDIEA---LAEQWL--GHEMIAH---ADIVGSGRNRISLDQV 560 Query: 152 EAWRLFGEYCKGDVTVTREIF---------KRLEPLSSK-EQELWYLDQTINDRGYCVDV 201 E EY V ++ +R+ + E+ L + + RG +D Sbjct: 561 EI-PRAAEYGAESADVIMRLWLVFKARLISERMNNVYESLERPLIDVLARMERRGIMIDR 619 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + L+ +L+ E+ + G + ++L +F + GL T+T Sbjct: 620 QVLARLSGEFAQSAARLEAEIREIA-GEDINPGSPKQLGDVMFGKMGLPGGQKTKTGAWS 678 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 +S + +A F R L + S+ Sbjct: 679 TTASILEDLAEAGHDFP--------------------------RKILDWRQVSKLKSTYT 712 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P LP+ R H T +++P+ I +R IA++G KL Sbjct: 713 DALPTHLLPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAKGHKL 772 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + IE R+LA +A +AF+ G D++ T + F V + + R K + Sbjct: 773 VSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPGEVRRRAKAIN 832 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A +A+ G+ +K E + + ++ EH Sbjct: 833 FGIIYGISAF---GLANQLGIPREEAGAYIK--KYFERFPGIRAYMDATRDFCREHGYV- 886 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + ++ P + Sbjct: 887 ----------------------------------------TTLFGRKCHYPDIKASN--- 903 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 PS R+ R N R G + I +A+ R E + Sbjct: 904 ------PSLRAFNERAAINARL---------------QGTAADIIRRAMIR---MEDALT 939 Query: 617 ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 K ++L VHDE+V E PD++ + ++ +M P A L PL+ + Sbjct: 940 QKKLAARMLLQVHDELVFEVPDSEVDKTLPVIREVMEQAPFPATALSVPLRVDA 993 >gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] Length = 893 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 114/698 (16%), Positives = 210/698 (30%), Gaps = 171/698 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMP-QVLK 58 +D ET S +D C ++ + F H D + LK Sbjct: 322 LDLET-SSLDPFNC---------EIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSKLK 371 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116 E LE+ IV N ++ VL I ++A P +L Sbjct: 372 EILEDPSSKIVGQNLKYDYKVL---MVKGISPVYPHFDTMIAAYLLEPNEKKFNLEDLSL 428 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K KM +EL++ F Y D +T ++K L Sbjct: 429 KFLGYKMTSYQELMS-FSSPLF-------GFSFADVPVDKAANYSCEDADITYRLYKILS 480 Query: 177 -PLSSKEQE---------LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L E E L + + G VD L++ + +L +++ + Sbjct: 481 MKLHEAELENVFYRIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEKIYQIA 540 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNNRM 281 G + +++ LF + G+ T T + VL + Sbjct: 541 -GEPFNINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRIEVLEEIANEHEIVPLILE--- 596 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + P P+ R H Q Sbjct: 597 ----------------------------YRKIQKLKSTYIDTLPKLVNPKTGRIHASFHQ 628 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGE 395 T +SDP+ + +R ++ +V AD + IE R+LA ++G+ Sbjct: 629 TGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGD 688 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +KAFE G D++ T +R +NV P +V ++ R +GK++ ++ Y Sbjct: 689 ENLVKAFEEGIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTPYGLSV---RL 745 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + ++ + Sbjct: 746 GIPVKEAEKMIISYFTLYP----------------------------------------- 764 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ + + Q + E G R+ M +DKN Sbjct: 765 ---KVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKNT--------------QSEG 807 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 R +NT +Q + DI+ M++ +++ VH Sbjct: 808 ERIAINTP------------------IQGTAADIIKLAMIDIDEELRKRNMKSRMIIQVH 849 Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666 DE+V E PD ++ ++ + MT+ +PL+ + Sbjct: 850 DELVFEVPDEEKEELVDLVKNKMTNVVK--LSVPLEVD 885 >gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803] gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803] Length = 942 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 105/614 (17%), Positives = 200/614 (32%), Gaps = 92/614 (14%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALE 62 D ET S L D ++ AF ++ + + + L+ E Sbjct: 374 DTETTSLNTL----------DAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEELRNFFE 423 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 N + + N ++ VL I + + ++A P A + Sbjct: 424 NDKIEKIGQNLKYDIKVLDKY---KIDVKGALFDTMIAHYLINPDMRHNMDVLAETYLNY 480 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177 + ELI + K + A EY D +T ++ E Sbjct: 481 TPQPISELIGKKGKNQGS---------MRDVALDKQTEYAVEDADITFQLKNLFEKELEE 531 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + E L + + G +D +L++ + + L+ ++ G Sbjct: 532 AETRKLFNEIEIPLVEVLADMELEGIKLDEEYLKSLSEALASDIKDLETKIYE-AAGEEF 590 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 ++L LF + L T+T T + VLSS + V Sbjct: 591 LISSPKQLGIILFEKMELSKKPKKTKTGQYSTSEDVLSSLAEENDIVQHVL--------- 641 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + G + P Q R H + Q Sbjct: 642 ----------------------DYRGLVKLQNTYVDALPNQVERTTGRVHTDYVQTTAAT 679 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I VR + E L+ AD + IE R++A ++ E+ ++ Sbjct: 680 GRLSSNNPNLQNIPIRTERGKQVRKAFVPRDENYVLLAADYSQIELRIIAALSNEENMIQ 739 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ GED++ +T A+ FNV +VT++QR+ K + + Y A +++ T L+ + Sbjct: 740 AFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTSLSRS 796 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L+ T + + NF E E+ +G ++ + +SR + + Sbjct: 797 ESKELIDTYY--KTYPKLSNFIADQVEFARENGHVSTVLGR-----RRYLKDINSRNAIV 849 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSY 579 + G A K + + K++N ++L LV+ D + Sbjct: 850 RGAAERNAVNAPIQGSAADIIKLAMINIHKKLKEENYKTKMLLQVHDELVF-DAHKDELE 908 Query: 580 LNTTTRQLTREYTY 593 + E Y Sbjct: 909 KVQKMIKSEMENAY 922 >gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] Length = 949 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 98/583 (16%), Positives = 197/583 (33%), Gaps = 84/583 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70 D G+ ++ AF ++ + + L+ E+T + + Sbjct: 382 DTETTGLDPLV--AELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRPFFEHTGIEKIG 439 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKEL 129 N ++ VL D+ + + +LA P A + EL Sbjct: 440 QNLKYDIKVLAKY---DVKVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNYTPVSITEL 496 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LS 179 I + K + R+ P EY D +T ++ + E + Sbjct: 497 IGKKGKNQKS----MRDVP-----LDQQTEYAVEDADITLQLKQHFEKELDEAGTRKLFN 547 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +DV +L+ ++ + +L E+ G ++L Sbjct: 548 DIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYEEA-GEEFKISSPKQL 606 Query: 240 KTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF + L T+T T + VLS K +V Sbjct: 607 GEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVL----------------- 649 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + G S+ P Q + R H + Q + +++P Sbjct: 650 --------------DYRGLSKLKSTYVDALPEQV-AQDGRVHTDYMQTVAATGRLSSNNP 694 Query: 355 DPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I VR + E L+ AD + IE R++A ++ E+ ++AF GED+ Sbjct: 695 NLQNIPIRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFTDGEDI 754 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T A+ FNV +VT++QR+ K + + Y A +++ T L+ L+ Sbjct: 755 HASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAF---GLSNQTDLSRGEAKELID- 810 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + + N+ + + E+ ++ T +R ++ +S + + Sbjct: 811 -NYYKSYPKLRNYMSELVDFARENG----YVKTVLDR-RRYLNGINSSNGVVRGAAERNA 864 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570 G A K + + ++ + ++L LV+ Sbjct: 865 VNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVF 907 >gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977] gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977] Length = 839 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 98/522 (18%), Positives = 174/522 (33%), Gaps = 139/522 (26%) Query: 171 IFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ + E+ LW+L + + RG +DV L+Q + E +L+ Sbjct: 420 LWREMSDRLEGEERLWWLYREVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELERLE 479 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAI 274 E+ L G + ++L+T L+ E GL T T +R VL + + P Sbjct: 480 AEIHRLA-GHPFNLNSRDQLETVLYDELGLAAGRRTAKTGKRSTSASVLETLRGAHPIVE 538 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ Q+ ++ P PR R Sbjct: 539 KIL-------------------------------QYRELAKLKGTYLDPLPKLVHPRTGR 567 Query: 335 SHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q T +SDP+ I I +R +A EG LVVAD + IE RVL Sbjct: 568 LHTRFHQTGTATGRLSSSDPNLQNIPIRTEIGRRIRKGFVAGEGYLLVVADYSQIELRVL 627 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A ++G++ ++ F+ G D++ T A F V +V +R K + + Y A Sbjct: 628 AHLSGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAAKTINFGVLYGMSA---H 684 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +++ G++ + +A+ F +++P F+ E ++ Sbjct: 685 RLSRELGID----------------YGEAQAFIDRYFDSYP---GVRAFMERVLEEARER 725 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + + R+R L+ ++ Sbjct: 726 -----------------------GYVETLFGRRRHVPELLSKARN--------------- 747 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIV 625 R N VQ + D++ M G ++ Sbjct: 748 -VREAAERVAFNMP------------------VQGTAADLIKLAMVKLAPRLEPLGAALL 788 Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 L VHDE+V E P+ A ++ M +W +PL E Sbjct: 789 LQVHDELVVEAPEERAAETARVVKATMEE--AWRLDVPLAVE 828 >gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8] gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8] Length = 893 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 101/609 (16%), Positives = 189/609 (31%), Gaps = 100/609 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQ 55 ID ET S + + P E + + V+ + Sbjct: 322 IDLETSS------------LDPFDCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVL-K 368 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 LKE LE+ IV N F+ VL +P + ++A P Sbjct: 369 KLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPY---FDTMIAAYLLEPNEKKFNLDD 425 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK KM +EL++ F Y D +T ++K Sbjct: 426 LALKFLGYKMTSYQELMS-FSFPLF-------GFSFADVPVEKAANYSCEDADITYRLYK 477 Query: 174 RLE-PLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L L E L + + G VD L++ + +L +E+ Sbjct: 478 TLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIY 537 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFN 278 + G + +++ LF + G+ T T VL + Sbjct: 538 RIA-GEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE 596 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + P P+ R H Sbjct: 597 -------------------------------YRKIQKLKSTYIDALPKMVNPKTGRIHAS 625 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392 +Q T +SDP+ + +R ++ +V AD + IE R+LA + Sbjct: 626 FNQTGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHL 685 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L+AFE G D++ T +R FNV P +VT++ R GK++ ++ Y Sbjct: 686 SGDENLLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV-- 743 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + ++ + + ++ + + E G + + R Sbjct: 744 -RLGVPVKEAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARD 800 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571 ++++ + T G A K + + K++ +++ LV+ Sbjct: 801 RNTQAEG-----ERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFE 855 Query: 572 DVGNNRSYL 580 + L Sbjct: 856 VPNEEKDAL 864 >gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10] gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10] Length = 893 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 102/609 (16%), Positives = 189/609 (31%), Gaps = 100/609 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------DCVHDPVMPQ 55 ID ET S + + P E + + V+ + Sbjct: 322 IDLETSS------------LDPFDCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEVL-K 368 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113 LKE LE+ IV N F+ VL +P ++A P Sbjct: 369 KLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPP---HFDTMIAAYLIEPNEKKFNLDD 425 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 ALK KM +EL++ F D Y D +T ++K Sbjct: 426 LALKFLGYKMTSYQELMS-FSSPLFGFSFVD-------VPLEKAANYSCEDADITYRLYK 477 Query: 174 RLE-PLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L L E L + + G VD L++ + +L +E+ Sbjct: 478 TLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIY 537 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFN 278 + G + +++ LF + G+ T T VL + Sbjct: 538 RIA-GEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILE 596 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + P P+ R H Sbjct: 597 -------------------------------YRKIQKLKSTYIDALPKMVNPKTGRIHAS 625 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392 +Q T +SDP+ + +R ++ +V AD + IE R+LA + Sbjct: 626 FNQTGTATGRLSSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHL 685 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ L+AFE G D++ T +R FNV P +VT++ R GK++ ++ Y Sbjct: 686 SGDENLLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSV-- 743 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ + ++ + + ++ + + E G + + R Sbjct: 744 -RLGVPVKEAEKMI--VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARD 800 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571 ++++ + T G A K + + K++ +++ LV+ Sbjct: 801 RNTQAEG-----ERIAINTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFE 855 Query: 572 DVGNNRSYL 580 + L Sbjct: 856 VPDEEKDAL 864 >gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330] Length = 925 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 105/642 (16%), Positives = 195/642 (30%), Gaps = 160/642 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVG 113 L+ LE+ + + N +++ + K N DI + + +LA + L L + Sbjct: 401 LQPFLESESLGKIGQNLKYDQHIFK---NQDIDLKGIVGDAMLASYIVESHLTHNLDDLA 457 Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L L + E C E + +Y D I Sbjct: 458 ARWLGLETISYES-------LCGKGAKEIS------FADVDVQAATQYACQDADFALRIE 504 Query: 173 KRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + L E + + + G +D A + + E +L+Q+ Sbjct: 505 QHLRTQMDAAQLALYQQMELPVAQVLFEMERAGVQIDRAELAQQSATLGAELLQLEQQAY 564 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVF 277 L G + ++L+ LF + G+ + + +T T + VL P + Sbjct: 565 ELA-GQPFNLNSPKQLQEILFDKLGIPTKGVKKTAKGGLSTDESVLEKLADDYPLPKIIL 623 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 Q S+ LP+ R H Sbjct: 624 -------------------------------QTRSLSKLKSTYTDKLAEMILPQTGRVHT 652 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q + +++P+ I VR A + +V AD + IE R++A + Sbjct: 653 NYAQAVAITGRLASNNPNLQNIPIRTEQGRRVRRAFTAPQNCVIVSADYSQIELRIMAHL 712 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ AF ED++ T A F +AP +T +QR K + L Y +A Sbjct: 713 SGDTTLQAAFHNNEDVHRRTAAEVFGMAPEHITSEQRRYAKTINFGLIYGMSEY---GLA 769 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + G++ + K ++ Sbjct: 770 KSLGIDAMSA--------------------------------------------KMFIQR 785 Query: 513 KHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +R + + + + + EQ + G + +R +P ++ K Sbjct: 786 YFARYTGVADYMQRTKEQAQQLGYVETLFGRRLYLPDIHAKN---------------AMT 830 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625 G R+ +N Q + D++ M++ +V Sbjct: 831 RAGAERAAINAPM------------------QGTASDLIKRAMISVQDFLRQSSLHSRLV 872 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + VHDE+V E D++ L LM +PL AE Sbjct: 873 MQVHDELVLEVHDSELALIREKLPELMAQVGVGVLNVPLLAE 914 >gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] Length = 918 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 118/691 (17%), Positives = 228/691 (32%), Gaps = 152/691 (21%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----P-QV 56 + +D ET SP + L F + + + P Sbjct: 343 KQISLDTETDSPEPMRAN------------LVGISFCMDEKKAYYLPLGHQLAVNLPLPE 390 Query: 57 LKEALENT--DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + LE+ ++ HN F+ VL + + + +LA P L E Sbjct: 391 VLRHLEDALKGKLLLGHNLKFDLIVLAR---NGLELDNPLFDTMLAAYILDPGTLNYSLE 447 Query: 115 --ALKLSSQKMEEGKELIARFCKGETHECLYDRNK--PNHREAWRLFGEYCKGDVTVTRE 170 AL + KM +LI + T + + + +AW ++ Y V Sbjct: 448 TCALNELNYKMIPISDLIGKGKNQSTFDLVEPEKACIYSAEDAWAVYKLYPVYRRKVDFS 507 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + L + E L + Q + G +D ++ ++ +++E L ++ + G Sbjct: 508 VMANL--FDTIELPLIKVLQQMEMNGVAIDCSVLSEISHQINLELKTLTDKIYAFA-GYE 564 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF E L T+T Sbjct: 565 FNINSTQQLAKLLFEEKKLPYGRKTKTGYSTD---------------------------- 596 Query: 291 LNTLVEAMNSDGRLRGTL-QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 N+++E + D + G + Q+ S+ P P+ R H +Q +T Sbjct: 597 -NSVLEELAIDYEIAGIIIQYRQLSKLQSTYVSALPKMINPQTGRIHSSFNQTVTSTGRL 655 Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFE 403 +S+P+ I I +R A + + L+ AD + IE R+LA M+ ++ ++AF+ Sbjct: 656 SSSNPNLQNIPVRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFK 715 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ A+ FNV +VT DQR K + + Y G +K++ G++L Sbjct: 716 QDLDIHKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQ---RKLSRELGISL---- 768 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 K +++ + N Sbjct: 769 ----------------------------------------NEAKDIIDGYYAQFPSIRNF 788 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 ++Q + + A GR L ++ + L + Sbjct: 789 INQCVNKARQQHYAETLF-----------------------GRRLYLPNIDSKNQGLKSE 825 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPD 638 ++ +Q + D++ M+N K ++L VHDE++ E Sbjct: 826 AERI---------AVNMPIQGTAADLIKIAMLNIHKQIDKREDIKMILQVHDELLFEVQQ 876 Query: 639 TD-EFNASMLYHLMTS--NPSWAKGLPLKAE 666 E +++ M S P +A+ + LK + Sbjct: 877 EALEETKNIVKTCMESALPPKYAEKVHLKTD 907 >gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A] gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A] Length = 986 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 121/710 (17%), Positives = 225/710 (31%), Gaps = 164/710 (23%) Query: 2 ATLFIDFETRSPIDLTK--CGI-CKYAEDV-CVILFAFGFDDHPVELWDCVHDPVMP-QV 56 + ID ET S G+ + E + ++ G + +L + + Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKINQINQLKIEE 444 Query: 57 LKEALEN----TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSAL 109 + AL++ + N+ ++R +L I ++ + +LA L +L Sbjct: 445 VIFALQDWFSSNENHKTLQNAKYDRLIL---LRHGIILNGVVIDTLLADYIFDATLKHSL 501 Query: 110 KAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + F K ++ + + + + YC DV +T Sbjct: 502 DEIA----------------YREFGFKPKSFSDVVKKGEDFSYVDIKSASMYCGMDVYLT 545 Query: 169 REIF------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 R++ K + L EQ L + I G +D L+ + + Sbjct: 546 RKLAIIYINRLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKKLN 605 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 +++E+ ++ G + ++L LF + L + +T T VL + P Sbjct: 606 TIEKEVYNIA-GSEFNLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESDHP 664 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + +R S+ P Sbjct: 665 IVKMIIEHR-------------------------------TISKLLNTYVDALPKLIEKE 693 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 R H + +Q +T +S+P+ I S +R + + KL+ AD + IE Sbjct: 694 TGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQKDWKLLSADYSQIEL 753 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+L ++GE+ A+ ED++ T F + D+R IGK + + Y GA Sbjct: 754 RILTHLSGEEVLKNAYLKNEDVHSLTAKLLF--EKDAIDADERRIGKTINFGVIYGMGA- 810 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 Q+ A +TG++L + + + E + NF + A+ F+ T R Sbjct: 811 --QRFARSTGVSLIEAKYFL--SKFKERYPAVFNFLEY----QERLALSQGFVETLLGRR 862 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + Y +KN L +L + Sbjct: 863 R------------------------------------------YFHFNKNGLGRLLGTPP 880 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKA--- 620 + R +L +Q S DI+ M+ A Sbjct: 881 N-------------EIDLTTARRAGMEAQQLRAAANAPIQGSSADIIKLAMIQLHSALRE 927 Query: 621 ---GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 I+L VHDE+V E P E ++ + M + +PL E Sbjct: 928 TGLAAKILLQVHDELVLEVNPKDLEETKLLVKNTMENAVK--LSVPLIVE 975 >gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN] Length = 870 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 112/605 (18%), Positives = 193/605 (31%), Gaps = 142/605 (23%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 + +LK+ D+T +N R A N I I L LA Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLK--RDC-HALLNAGIVIREISYDLALAEH------ 398 Query: 109 LKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L G + S + G E RF K + L P E + FGE + Sbjct: 399 LTNGGGKISFQSLLVNHGFTETAHRFAKEWGNLGLPIGRLPEQPEQY--FGELVAYLPII 456 Query: 168 TREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 I + + LS E L + ++ G +DV L + + E L +E Sbjct: 457 KDAILEEINRKNLNHILSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELAVLTEE 516 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + L+ G + + ++L L+ E GL D ++T VL + + P ++ Sbjct: 517 IYDLS-GRPFNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLA--- 572 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 F + P Q R H DQ Sbjct: 573 ----------------------------FRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQ 604 Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 T DP+ I +R SE + AD + IE R LA ++ + Sbjct: 605 TGTVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQD 664 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+GED++ T ++ F+V QV+K+QR K + + Y A +A Sbjct: 665 KSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAF---GLAKVL 721 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 +++ L++ + + +F + A +DL + T R Sbjct: 722 KISVGEAQELIQA--YFSRYPEIAHFVEETI----QQAAKDLRVTTMLGR---------E 766 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R+ + WNE P R+ Sbjct: 767 RIIDSWNEF--------------------------------------PGSRAAS------ 782 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 R +NT + + +++ M++ ++A ++L +H Sbjct: 783 GRFAVNTRIQG------------------SAAELIKLAMLDISQAIKQQQMKSRMLLQIH 824 Query: 630 DEIVC 634 DE++ Sbjct: 825 DELLF 829 >gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] Length = 986 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 121/707 (17%), Positives = 225/707 (31%), Gaps = 158/707 (22%) Query: 2 ATLFIDFETRSPIDLTK--CGI-CKYAEDV-CVILFAFGFDDHPVELWDCVHDPVMP-QV 56 + ID ET S G+ + E + ++ G + +L + + + Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEINQINQLKIEE 444 Query: 57 LKEALEN----TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 + AL++ + N+ ++R +L I ++ + +LA Sbjct: 445 VIFALQDWFSSNENPKTLQNAKYDRLIL---LRHGIILNGVVMDTLLADYI--------C 493 Query: 113 GEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 LK S ++ F K ++ + + + + YC DV +TR++ Sbjct: 494 DATLKHSLDEIA-----YREFGFKPKSFSDIVKKGEDFSYVDIKSASMYCGMDVYLTRKL 548 Query: 172 F------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 K + L EQ L + I G +D L+ + ++ Sbjct: 549 AIIYINRLKETSIKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKRLNTIE 608 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAI 274 +E+ ++ G + ++L LF + L + +T T VL + P Sbjct: 609 KEVYNIA-GSEFNLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESDHPIVK 667 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + +R S+ P R Sbjct: 668 IIIEHR-------------------------------TISKLLNTYVDALPKLIEKETGR 696 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H + +Q +T +S+P+ I S +R + + KL+ AD + IE R+L Sbjct: 697 VHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQKDWKLLSADYSQIELRIL 756 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 ++GE+ A+ ED++ T F + D+R IGK + + Y GA Q Sbjct: 757 THLSGEEVLKNAYLKNEDVHSLTAKILF--EKDAIDADERRIGKTINFGVIYGMGA---Q 811 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 + A +TG++L + + + E + F + A+ F+ T R + Sbjct: 812 RFARSTGVSLIEAKYFL--SKFKERYPAVFKFLEY----QERLALSQGFVETLLGRRR-- 863 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 Y +KN L +L + + Sbjct: 864 ----------------------------------------YFHFNKNGLGRLLGTPPN-- 881 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKA------ 620 R +L +Q S DI+ M+ A Sbjct: 882 -----------EIDLTTARRAGMEAQQLRAAANAPIQGSSADIIKLAMIQLHSALRETGL 930 Query: 621 GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 I+L VHDE+V E P E ++ + M + +PL E Sbjct: 931 AAKILLQVHDELVLEVNPKDLEETKLLVQNTMENAVK--LSVPLIVE 975 >gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9] Length = 923 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668] gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668] Length = 923 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177] gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] Length = 923 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13] gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13] Length = 923 Score = 260 bits (663), Expect = 9e-67, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca] Length = 750 Score = 259 bits (662), Expect = 9e-67, Method: Composition-based stats. Identities = 106/633 (16%), Positives = 201/633 (31%), Gaps = 147/633 (23%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 + ++ + + L+ LE+ + N+ F+R +L+ + I + + +LA Sbjct: 216 EMLNIEQVLEALRPILESEEYPKTLQNAKFDRLILR---SQGITLKGVVFDTMLASYIIN 272 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 P + + L+ + +L +++ L + K YC DV Sbjct: 273 PES------SHNLTDLSLRYLPDL---GIVAQSYSQLVPKGKTIADLDINTVANYCGLDV 323 Query: 166 TVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 T +I ++++ + EQ L + + +G +D + L+Q + Sbjct: 324 FTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGET 383 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKL 269 L++ G V + ++L LF L + +T T VL K Sbjct: 384 LDNLEKTSHQ-AAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHD 442 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + L++ S+ P Sbjct: 443 HPV-------------------------------INSILEYRTLSKLKSTYVDALPELVR 471 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384 R H + +Q IT +S P+ I S +R I G LV AD + I Sbjct: 472 SDTGRIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQI 531 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E+ ++A+ T +D++ T F+ +T ++R +GK++ + Y G Sbjct: 532 ELRILAHLSQEKVLIEAYNTNQDVHSLTAKLLFDR--DGITPEERRLGKIINFGVIYGMG 589 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A Q+ A G++ + + E+ AI ++ T Sbjct: 590 A---QRFAREVGVSATAGKQFID------RFNSQYPGVFEYLESQKLAAINQGYVETILG 640 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R +++ R R Sbjct: 641 R--------------------------RRYFESLKGRDR--------------------- 653 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KA 620 L Y+D R+ N + S DI+ M+ Sbjct: 654 -DRLNYQDEQMLRAAANAPIQ------------------GSSADIIKIAMIKLAEILKNY 694 Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMT 652 ++L VHDE+V E P ++ + M Sbjct: 695 QARLLLQVHDELVFEVPLSEWEELEYQIKSTME 727 >gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] Length = 944 Score = 259 bits (662), Expect = 9e-67, Method: Composition-based stats. Identities = 91/592 (15%), Positives = 184/592 (31%), Gaps = 83/592 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKEALENTDVTIV 69 +D + + + + + + + + P ++L+ LEN ++ Sbjct: 375 VDTETTSLNTF--EAELAGISISTEARKARFIALANSSLNPQSALELLRPLLENPELPKT 432 Query: 70 AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 N ++ VLK +D+ + T++ + A + K +EL Sbjct: 433 GQNLKYDILVLKKY-GIDLTPVGF-DTMLASYVLDPEEKHNLDDLAARHLGYKTTTFEEL 490 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 +Y D + ++ + E+EL +L Sbjct: 491 ----------TGTGKAKLHIFDVEPEQLSDYACQDADLALQLEEIFRKKLEGEKELLWLC 540 Query: 190 QTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + I G C+D ++ V E L +++ + G + ++ Sbjct: 541 EHIEFPLVSVLAAMEHAGICIDTPHLEKTSEAVGKELELLTEKIYA-ASGAPFNIDSPKQ 599 Query: 239 LKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L LF GL + T+T VL +L P + Sbjct: 600 LSNILFNVLGLPTKKSTKTGFSTNVEVLEELAELHPVVASLLE----------------- 642 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + + P P R H +Q IT +S+P+ Sbjct: 643 --------------YRTLQKLKTTYIDALPKIVNPLTGRLHTSFNQFITATGRLSSSNPN 688 Query: 356 PLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I + +R I S K L+ AD + IE R+ A ++G+ ++AF ED++ Sbjct: 689 LQNIPIRSPLGKEIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFRNREDIH 748 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T F ++T D R K + + Y ++ + + ++ T Sbjct: 749 TATARVIFGS--DEITPDMRRKAKEVNFGVLYGIMPF---GLSKRLNIPRSEAIAIIDTY 803 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + + + E +D ++ T R ++ +SR S + +A Sbjct: 804 KAK--YPGLFLALQEIIET----GKKDGYVSTLLGR-RRYIADLNSRNSNIQKAAERAAM 856 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580 T G A K + + +++L L++ + L Sbjct: 857 NTPIQGTAADIIKCAMNLCSERLRKNSMRSVMLLQVHDELLFETTDEEKEPL 908 >gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] Length = 896 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 113/702 (16%), Positives = 218/702 (31%), Gaps = 176/702 (25%) Query: 7 DFETR-SPIDLT-KCGIC-------KYAEDVCVILFAFGFDDH--PVELW---DCVHDPV 52 D ++ S I L+ K + Y +D+C+ F ++ P + Sbjct: 318 DLQSYISAIKLSGKVAVYYHVDPTGSYMDDLCI----FACNEEYAPANIVFSEKLTCQEA 373 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKA 111 + L+E E+ D+ H + L + I + I +A P+ Sbjct: 374 L-NELREIFESKDIEKYGH----DLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTY 428 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-KPNHREAWRLFGEYCKGDVTVTRE 170 +L K+++ E LYD++ K +E E C V Sbjct: 429 --TISELYEDKLKQSI---------TPVEILYDKHGKRLQQEQDISSSEVCAAAVNAIYV 477 Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + ++L P+ E L + + RG+ VDV ++ +D L+ Sbjct: 478 LIQKLRPIIRDNGQDELYYEIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVILEN 537 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277 E+ + G + ++L LF + GL + T+T VL ++ Sbjct: 538 EIY-MQAGETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTNAEVLEQLSYKHEIVERIL 596 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + L + + H Sbjct: 597 EYRQLM-------------------------------KLKSTYADGL-LSVLEQDGKIHS 624 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391 +Q +T +++P+ I +R I ++ L+ AD + IE RVLA Sbjct: 625 NFNQTVTATGRISSTEPNLQNIPVKLEMGRKIRKVFIPTNQDYVLLDADYSQIELRVLAH 684 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 + + ++AF ED++ TT ++ F + P +V+ R+ K + + Y G + Sbjct: 685 ITDDSNMIEAFLKNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIGDFSLS-- 742 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G+ + ++ D + + + E E F+ Sbjct: 743 -KDIGVTKKEARQYID------DYLDKYSKVKEYMSDTVEKGKEFGFV------------ 783 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + +RR +P + K N + Sbjct: 784 -------------------------TTLYNRRRYLPEL---KSSNFNMRSF--------- 806 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625 R +NT +Q + DI+ M+ ++ Sbjct: 807 ---GERVAMNTP------------------IQGSAADIIKISMVKVYNELKKRKLKSKLI 845 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 L VHDE++ ET ++ E + +L M + +PL + Sbjct: 846 LQVHDELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVD 885 >gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74] gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74] Length = 1024 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 103/674 (15%), Positives = 201/674 (29%), Gaps = 156/674 (23%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTDVTIVAH 71 D I D+ + FA+ + PV D + K EN + V Sbjct: 456 DSETTAIDPVEADLVGLSFAYRAGEAFYVPVPA-DRAEAQAIVDQFKPVFENPTIEKVGQ 514 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELI 130 N ++ +LK + + + ++A P A+ + E + LI Sbjct: 515 NLKYDLLMLKKY---GVEVQGKLFDTMIAHYLIEPEMRHNMDMMAMTYLNYSPVEIEALI 571 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181 + KG+ + +Y D +T ++ P K Sbjct: 572 GKKGKGQ---------LTMRDVDIQKVVDYAGEDADITLQLKHAFAPRLEKDNLHKLFDQ 622 Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + + G +D L+ ++V+ ++ QE+ + G + ++L Sbjct: 623 VEMPLVQVLTDLELEGIKIDTNALSELSATLEVDMRQVQQEIFEIA-GESFNIGSPKQLG 681 Query: 241 TWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF + L T+T T + +LS + A ++ + R Sbjct: 682 EVLFDKLKLDKNAKKTKTGQYATGEEILSKLEAEHEIARKILDYRELI------------ 729 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + P R R H +Q + +++P+ Sbjct: 730 -------------------KLKNTYVDALPLLISKRTGRIHTSFNQAVAATGRLSSTNPN 770 Query: 356 PLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +R + ++ AD + IE R++A +G+Q L+AF G D++ Sbjct: 771 LQNIPIRTPRGQEIRKAFVPRGPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIH 830 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T ++ F+V +VT D R K + + Y + +A + +++ Sbjct: 831 TQTASKVFHVGLDEVTSDMRRKAKTINFGIIYGISSF---GLAQRLKIPRKEAGQIIE-- 885 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + + + Q E Sbjct: 886 ------------------------------------------EYFAGFPAVKDYIDQCIE 903 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + G A RR Y N+R N T R Sbjct: 904 KARGFGYAETILGRRR------------------------YLRDINSR---NQTDRMFAE 936 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EF 642 +Q + D+L M+ + ++LTVHDE+V + + + Sbjct: 937 RNA-----VNAPIQGSAADMLKIAMIQIHEFMQAERLKSKMILTVHDELVFDAHRDEIDL 991 Query: 643 NASMLYHLMTSNPS 656 + +M + Sbjct: 992 LRVRVDEIMKNAIP 1005 >gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium] Length = 916 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 106/636 (16%), Positives = 207/636 (32%), Gaps = 149/636 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGE 114 LK L++ + V N ++ VL N I ++ ++ N + + Sbjct: 393 LKPILQDESINKVGQNLKYDAHVLA---NYQIDLNGISDDTMVKSYVLNSVATRHNMDDL 449 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 ++ + + ++ + K T + Y DV VT E+ K Sbjct: 450 SMHYLNHQTIHFSDVAGKGKKQITFNQV----------GLEAAFPYACEDVIVTHELNKV 499 Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+ + +L L Q + G +D L + V + ++ + Sbjct: 500 LDEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGLLNAQQLDVVKQMNEIQSQAF 559 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 L G + ++++ LF E GL LE + T + S+N++ + Sbjct: 560 ELA-GDAFNLESPKQIQQILFSEEGLGLEAK-KKTPKGAPSTNEEALKLLDHPLVDL--- 614 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 L + ++ P Q R H Q + Sbjct: 615 -----------------------ILSYRTLTKLNSTYLEALPKQIDLNTKRLHTSYHQAV 651 Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +S+P+ I + +R IA +G ++ AD + IE R++A ++ ++ Sbjct: 652 TATGRLSSSNPNLQNIPIRTELGARIRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSL 711 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF D++ T + FNV +V KD R K + L Y A K + + Sbjct: 712 IEAFNNDVDVHSATASMMFNVPIEEVNKDHRRNAKAINFGLIYGMSAFGLAKQINVSRT- 770 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +A+ + EN+ V Sbjct: 771 ------------------EAKQYIDAYFENY-------------------------PGVL 787 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + +A + ++ I +R +P + K + L + R+ Sbjct: 788 NYMDNIREAAK--VQGYVETIMGRRLYLPQINAK------------NKMLQQHAL---RT 830 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632 +N Q S DI+ + M++ +++ VHDE+ Sbjct: 831 AINAPM------------------QGSSADIIKKAMLDVHEWIGDGNDEIKMIMQVHDEL 872 Query: 633 VCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 V E DEF A+ + LM + ++ +PL + Sbjct: 873 VFEVNASKADEF-ANKIQELMAN--AYQLDIPLVVD 905 >gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118] gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118] Length = 957 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 109/684 (15%), Positives = 207/684 (30%), Gaps = 171/684 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----Q 55 +D ET S ++ ++ +F H +P Sbjct: 385 LDTETTSLDEMR----------AQIVGISFSVTPGEAAYIPLAHAYPDAPAQLPLADVLA 434 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 LK L++ + + ++R V N I + + T++ + + Sbjct: 435 KLKPWLQDASHKKLGQHVKYDRHV---FANHGIEVQGYAHDTMLQSYVLEVTKPHGLASL 491 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + ++L C ++ +D + +Y D +T ++ + Sbjct: 492 AERHLGRSGISFEDL----CGKGANQICFD------QVDIAQAAQYSCEDSDMTLDVHRA 541 Query: 175 LEPLSSKEQEL---WYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L PL +L + L+ I G +D + + +L++E Sbjct: 542 LWPLLQANDKLRFIYELEIASSEALYRIERNGVLIDGPTLAVQSHELGQRILQLEKEAHE 601 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 L G + +++ F + GL + T T T VL + P ++ +R Sbjct: 602 LA-GQPFNLSSPKQIAEIFFTKLGLPVVKKTPTGSPSTDDEVLQKLAEDYPLPAKILEHR 660 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G ++ PR R H Sbjct: 661 -------------------------------GLAKLKGTYTDKLAQLAHPRTGRVHTHYA 689 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q I + +P+ I VR +A G + AD + IE R++A ++G+ Sbjct: 690 QAIAVTGRLSSLEPNLQNIPVRTPEGRRVREAFVAPPGSVIASADYSQIELRIMAHISGD 749 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF G D++ T + F V AQVT +QR KV+ L Y A K Sbjct: 750 AALLLAFHDGIDVHRATASEIFGVDRAQVTSEQRRYAKVINFGLIYGMSAYGLAKA---- 805 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 L+++ A + + +N+ + ++ T R R Sbjct: 806 -LSIDNTAAKNYIERYFDRYPGVKNYMEHTRALAKRQG----YVETVFGR-----RLYLP 855 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ P+G R G Sbjct: 856 EINS-------------------------------------------PNG----PRRSGA 868 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 R+ +N Q + D++ M+ K +++ VH Sbjct: 869 ERAAINAPM------------------QGTAADLIKLSMVKVQQVIDEEKRATKMIMQVH 910 Query: 630 DEIVCETPDTD-EFNASMLYHLMT 652 DE+V E P+++ ++ + LM Sbjct: 911 DELVFEVPESEIDWVRHEVPRLMA 934 >gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b] gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b] Length = 923 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a] gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a] Length = 923 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVALEQEAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98] Length = 620 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 48 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 97 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 98 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 155 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 156 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 205 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 206 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 265 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 266 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 323 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 324 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 353 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 354 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 413 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 414 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 470 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 471 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 523 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 524 NGPRRQAAERAAINAPMQGTA 544 >gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] Length = 929 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 106/675 (15%), Positives = 193/675 (28%), Gaps = 160/675 (23%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALE 62 +D G+ ++ +F + H H Q LK LE Sbjct: 357 SLDTETTGLD--GMTAQLVGISFSIEAHQAAYLPLAHHYPGAPDQLGREHALQKLKHWLE 414 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + N +++ + I TL+ + + AL+ Sbjct: 415 SPAHKKLGQNLKYDQHIFANHGIAFAGIAE--DTLLQSYVLESHKPHEMGNLALRHLGLS 472 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-- 180 +++ + K + + Y D +T ++ + L P Sbjct: 473 TVSYADVVGKGAKQIGFDQV----------DLETATRYAAEDADITLQLHQTLSPQLQGR 522 Query: 181 -------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E + + + G +D A+ + + ++ +++++ G + Sbjct: 523 LDAVYRQIELPVREVLFKMERNGVLIDSAMLGRQSHELGLKLNEIEKQAFE-AAGQPFNL 581 Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T +T + VL P + R Sbjct: 582 NSPKQLSEILFDKLQLPVKKKTPSGTPSTDEEVLQELALDYPLPKLLLEYR--------- 632 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G ++ P + R H Q + Sbjct: 633 ----------------------GMAKLKSTYTDKLPQMVNAKTGRVHTSYAQAVAVTGRL 670 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +SDP+ I +R I G ++V AD + IE R++A ++G++ LKAF Sbjct: 671 ASSDPNLQNIPIRTPEGRRIREAFITPAGSRIVSADYSQIELRIMAHLSGDEGLLKAFAA 730 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F+VA V+ +QR KV+ L Y LN+ T A Sbjct: 731 GEDIHRATAAEVFSVALDAVSSEQRRYAKVINFGLIYG-----MSAYGLAAQLNIETSAA 785 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 K+ +R + + Sbjct: 786 ------------------------------------------KQYIDLYFARYPGVKRYM 803 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 EQ G RR L LP + N Sbjct: 804 DSTREQAKAQGFVETWFGRR---------------LWLP------------EINGANGMR 836 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPD 638 RQ +Q + D++ M+ K +++ VHDE+V E P Sbjct: 837 RQAAERAA-----INAPMQGTAADLIKLAMIAVQDWLETEKLATKLIMQVHDELVLEVPQ 891 Query: 639 TDEFNA-SMLYHLMT 652 + + LM Sbjct: 892 GELARVKDKVRELMC 906 >gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] Length = 876 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 304 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 353 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 354 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 411 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 412 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 461 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 462 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 521 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 522 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 579 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 580 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 610 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 669 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 670 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 726 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 727 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 779 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 780 NGPRRQAAERAAINAPMQGTA 800 >gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91] Length = 622 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 50 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 99 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 100 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 157 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 158 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 207 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 208 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 267 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 268 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 325 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 326 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 355 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 356 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 415 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 416 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 472 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 473 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 525 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 526 NGPRRQAAERAAINAPMQGTA 546 >gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] Length = 920 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 103/613 (16%), Positives = 193/613 (31%), Gaps = 102/613 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL-- 61 L +D ET + D A + ++ F ++H +P K+AL Sbjct: 350 LSLDTET-TSTD---------AIEAELVGLCFAVEEHKAFYV------AIPNDRKQALQY 393 Query: 62 --------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAV 112 E+ + + N ++ VLK N + + + +LA P Sbjct: 394 VNIFKSVYEDPSILKIGQNIKYDYEVLK---NYGVTLQGKMFDTMLAHYVLQPELRHNMD 450 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A L + K +ELI H+ P EY D +T ++ Sbjct: 451 YMAETLLNYKTIHIEELIG---APGKHQKSMRDIAPEDA------YEYGAEDADITLQLR 501 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 LEP + E L + + G VD A H +I +L++ + Sbjct: 502 NVLEPKLKEVAMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTERMNRLERHI 561 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 G + +++ LF + + T+T T + VL S + P + Sbjct: 562 YEEA-GETFNIASPKQVGDILFGKLQIMEKPKKTKTGQYVTNEEVLQSLRAKNPIVEDIL 620 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 +R G + P R H Sbjct: 621 AHR-------------------------------GLKKLLGTYVEALPKLIHKRTQHIHT 649 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +Q +T +SDP+ I +R C + G AD + IE R++A + Sbjct: 650 SFNQALTATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEPGCLFFSADYSQIELRIMAHL 709 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ ++AF G D++ T A+ ++ A VT ++R K + Y +A Sbjct: 710 SGDENMIEAFREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYGITTY---GLA 766 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ L+ E++ + E E A + + T R ++ Sbjct: 767 QRMGIDNKEARMLI------EDYFTTFPKVKAYMEQAKEEARQKGYAVTLFGR-RRYLPD 819 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYR 571 +S+ + + G K + + K + ++L L + Sbjct: 820 INSKNGTVRGFAERNAINAPIQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFS 879 Query: 572 DVGNNRSYLNTTT 584 + + Sbjct: 880 VYPEEKERVEKIV 892 >gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 1009 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 115/649 (17%), Positives = 214/649 (32%), Gaps = 148/649 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 + L+ LE+ + N+ F+R +L C + + + +LA P L A Sbjct: 461 EALRPILEDNNYPKALQNAKFDRLIL-RCQGIKL--AGVVFDTMLASYVIDPEGSHNLTA 517 Query: 112 VGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + L+ + K+L+ + + D P + YC DV T + Sbjct: 518 LCKEYLEDPKLTAKSYKDLV------SKEQTIADLAIP-------IVANYCGMDVYTTFQ 564 Query: 171 IFKRL----------EPLSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 + +L +PL++ EQ L + + +G ++ + L+Q ++ Sbjct: 565 LVSKLREKLEELDAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQELE 624 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNK 267 + ++Q + G S ++L LF L ++ +T VL + Sbjct: 625 NKLQLIEQTAYEVA-GEEFSLSSPKQLSKLLFETLKLDIKKSRRIQSGYSTDAAVLEKLQ 683 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + +R S+ P Sbjct: 684 DDHEVVKTILEHR-------------------------------TLSKLKSTYVDALPQL 712 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 P R H + +Q T +S+P+ I S +R + EG +V AD + Sbjct: 713 VRPDTGRVHTDFNQAATGTGRLSSSNPNLQNIPIRTEFSRQIRKAFLPKEGWLMVSADYS 772 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA + E ++A++T +D++ T F VT D+R +GK + + Y Sbjct: 773 QIELRILAHLTQEPVLVEAYKTNQDVHTVTAKLLF--EKETVTPDERRLGKTINFGVIYG 830 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 GA+ F + S G++ + E + + + AI ++ T Sbjct: 831 MGAQRFAR--SVEGVSPTQAKLFI------ERFNQRYSRVFEYLNRVKKDAIAQGYVSTI 882 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 R R+ G+++ K DV + + KN Sbjct: 883 LGR-----RRYFK-----------------FEGESVRKLKDSDVQDINLATLKN------ 914 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---- 618 + QL R +Q S DI+ M+ Sbjct: 915 -----------------IGQNDAQLLRAAANAP------IQGSSADIIKVAMVKLHDILK 951 Query: 619 KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V E P + E + + M + +PL + Sbjct: 952 DRQARLLLQVHDELVLEVPPDEWEELQHKIKNTMENAVE--LSVPLVVD 998 >gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999] Length = 931 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 95/544 (17%), Positives = 174/544 (31%), Gaps = 87/544 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSA 108 + L L+N+ V HN F++ VL D + ++ V+ + + + Sbjct: 405 EQLTPLLKNSKNQKVGHNLKFDKNVLANHGITLNGVAYDTMLESYVLNSVVTKHHIEALS 464 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L +G + + + K T + + + + Sbjct: 465 LHYLG-------HSPITLESIAGKGAKQLTFNQI----------GLAEAAPFAAENADII 507 Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + + L P +S E L + + G +D +Q + Sbjct: 508 LRLHQLLWPQLVNAPELANVVSELEVPLSQVLSRMEQTGVLIDSQKLAQQSQSLAERILH 567 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273 L++ + + G + ++L+ LF + L + T T + VL P Sbjct: 568 LEETVHEMA-GEAFNLGSTKQLQHILFEKMNLPVIKKTPKGAPSTGEEVLQELALNYPLP 626 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R G ++ P R Sbjct: 627 KAIMEYR-------------------------------GLTKLKNTYTDKLPKLIDHRTG 655 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q IT ++DP+ I VR IA G K+V AD + IE R+ Sbjct: 656 RVHTSYQQAITATGRLSSTDPNLQNIPIRTEEGRKVREAFIARPGYKIVAADYSQIELRI 715 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ + L AF G D++ T + F VA VT +QR K + L Y A Sbjct: 716 MAHLSSDSGLLHAFANGLDVHKATASEVFGVALEHVTSEQRRSSKAINFGLIYGMSAF-- 773 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +A + H + T +E ++MQ+ E A ++ T R + Sbjct: 774 -GLAKQLNIPRGDAQHYMDT-----YFERYPGVLQYMQDT-REEAKAQGYVKTVFGR-RL 825 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + S +A G A II V +D++++ +++ Sbjct: 826 YLPEITSSNGARRAGAERAAINAPMQGTAADIIKLSMLAVDNWIQTQDQSDICMIMQVHD 885 Query: 567 SLVY 570 L++ Sbjct: 886 ELIF 889 Score = 49.4 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 12/73 (16%) Query: 603 QAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPD--TDEFNASMLYHLMTS 653 Q + DI+ M+ + +++ VHDE++ E + D ++ ++ LM + Sbjct: 851 QGTAADIIKLSMLAVDNWIQTQDQSDICMIMQVHDELIFEIKEQKVDAYSTKII-ELMEN 909 Query: 654 NPSWAKGLPLKAE 666 S A +PL E Sbjct: 910 AVSLA--VPLTVE 920 >gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] Length = 976 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 110/657 (16%), Positives = 200/657 (30%), Gaps = 139/657 (21%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94 F DD P + M +K E+ V + HN ++ VL N I + Sbjct: 425 FSDDDTPAHYPQLDFETAM-AEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGINLAPVD 483 Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE-----CLYDRNKPN 149 T+ L+ ++ M+ L + T + + P Sbjct: 484 DTMCLSYVLD----------GGRVERHSMDY---LAGHWLDYTTIKFSDVCGKGAKQIPF 530 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCV 199 A +Y D +T ++ L+P + E + L + + + G V Sbjct: 531 SELAPEAALDYAAEDADITLRLWMILKPRLAGEKVASVYERLERPLIPVLAQMENYGITV 590 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT- 258 D ++ ++ L Q++ +L G + ++L LF + GL +T Sbjct: 591 DRSILARMSNDFATRMEALAQDILALA-GEDFNIASPKQLGEILFDKMGLQGGKKAKTGA 649 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 + L +++ + L + ++ Sbjct: 650 YSTSADVLEDLAASGVEIASK---------------------------VLDWRHLAKLKS 682 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373 LP R H + +SDP+ I +R+ IA+EG Sbjct: 683 TYADALVECILPATGRVHTSFSMVGASTGRLSSSDPNVQNIPIRTSEGRQIRTAFIAAEG 742 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 KL+ D + IE R++A +AGEQ ++AF+ G D++ T + F + Q+ + R K Sbjct: 743 CKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSETRRRAK 802 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y A +A + + + + + R E A Sbjct: 803 AINFGIIYGISAF---GLARQLSIPQGEARDYIAS------YFENFPGIRAYMERIKTEA 853 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 ED F+ T R + + + G A KR Sbjct: 854 REDGFVETLFGR-RIHITGMAGGSAAHRGFAERQAINAPIQGSAADIIKRA--------- 903 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 ++ +P +QA DI A+ Sbjct: 904 -----MIRIP------------------------------------PALQA--ADIRADM 920 Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGL--PLKAEG 667 ++ HDE++ E P D N + +M + + L PL AE Sbjct: 921 LLQV-----------HDELIFEAPAADADNAVKHITRIMEAAAAPVVDLKVPLVAEA 966 >gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] Length = 1060 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 109/590 (18%), Positives = 182/590 (30%), Gaps = 151/590 (25%) Query: 109 LKAVGEALKLSSQKMEEGK------ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 L A LKL++ ++ + ++ +F E E DR + + Sbjct: 573 LPAPASDLKLAAYLLDPVRNRYYLVDVARQFFGWELEEGPADR----PDDPACRTTQLLG 628 Query: 163 GD----------VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D V E L + + + G VD L ++ Sbjct: 629 RDAALCARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFT 688 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKL 269 +L +++ L G + ++L LF GL + T+T VL + Sbjct: 689 RRSQELAEQIYQLA-GETFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAAR 747 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P A V R ++ L E + DGR+ Sbjct: 748 HPIAELVLEYRSLVKLQGTY-VDGLAEHIGPDGRV------------------------- 781 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384 H Q + ++ P+ I +R +A G +LV AD + I Sbjct: 782 ------HTTFQQTVAATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQI 835 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA +G++ L+AF G+D++ T + F V QVT +QR + K + L Y Sbjct: 836 ELRVLAHYSGDEGLLEAFARGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQT 895 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + + DA F E +P Sbjct: 896 DYGLARALRI-------------------DRADARRFMDRYFERYP-------------- 922 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + + + ++G+ RR +P Sbjct: 923 --------------GVKRYMEETIRRARQHGEVTTLLGRR---------------RPVPE 953 Query: 565 GRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622 R VY N R +NT +Q + DI+ M+ +A Sbjct: 954 IRHRVYHIRQNAERVAINTP------------------IQGTAADIMKLAMIRVYRALAG 995 Query: 623 -----DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 IVL VHDE++ E P+ + A++L M A +PL + Sbjct: 996 EGLRARIVLQVHDELLVEAPEDEVPAVAALLRREMEGAFPLA--VPLVVD 1043 >gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] Length = 920 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 98/599 (16%), Positives = 184/599 (30%), Gaps = 86/599 (14%) Query: 4 LFIDFETRSP--IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L +D ET S ID G+ E+ A + M + K Sbjct: 350 LSLDTETTSVDAIDAELVGLSFSVEEKEAFYVAISPNREEA--------LNMVNIFKPLY 401 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120 EN ++ V N ++ VLK I + + ++A P A L + Sbjct: 402 ENEEILKVGQNIKYDYEVLKKY---GITLKGKLFDTMIAHYLIQPELHHNMDYMAETLLN 458 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179 + +++I KG+ + + D +Y D +T + LEP Sbjct: 459 YQTVHIEDIIGP--KGKKQKNMRDLAPAE-------VSDYACEDADITLRLKNALEPKLK 509 Query: 180 ---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E L + + G +D ++I K + E+ L G Sbjct: 510 EVNAESLFWEIEMPLVRVLADMELHGIRLDTEALEETSRIFTERMNKYEAEIYELA-GET 568 Query: 231 SSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +++ LF + + T+T T + VL S + P ++ R Sbjct: 569 FNISSPKQVGEILFGKLQIMEKPKKTKTGQFVTSEEVLISLQSKHPIVEKILEYR----- 623 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 G + P P+ H +Q +T Sbjct: 624 --------------------------GIKKLLSTYIDALPKLVKPQTGHIHTSFNQALTA 657 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R C I AD + IE R++A ++ ++ ++ Sbjct: 658 TGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMME 717 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T A+ ++ VT QR K + Y +A + Sbjct: 718 AFRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIYGITTY---GLAQRMDIPNG 774 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L+ ++ + E E A + T R ++ +SR + + Sbjct: 775 EAKELIA------DYFKTFPKVQAYMEEAKEVARRKGYAETIFHR-RRYLADINSRNATV 827 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + G K V + ++++ ++L L + + Sbjct: 828 RGFAERNAINAPIQGSEADIIKVAMVNIHQRFEREQIRSKMILQVHDELNFSVYPEEKE 886 >gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] Length = 924 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 107/618 (17%), Positives = 188/618 (30%), Gaps = 101/618 (16%) Query: 10 TRSPIDLTKCGICKY-AEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENT 64 T +D + + AE + L A D + + + LK LEN Sbjct: 351 THIAVDTETTSLDVFEAELAGISLCAEA---GKAFFIATTPDALERKEVVKQLKPLLENP 407 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123 +T N ++ VLK +++ +LA P AL+ + Sbjct: 408 AITKSGQNLKYDMLVLKKY-GIELAP--ISFDTMLASYVLNPDEHHNLDDMALRYLGRTT 464 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + EL T R+ E Y D V ++ + L+ E Sbjct: 465 TKYDEL--------TGTGKQRRHI-FEVEK-EALTNYACQDADVAFQLEEVLQAQLQAEP 514 Query: 184 ELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +L L T+ G +D + + ++E L + + G + Sbjct: 515 QLLALCTTMEFPLVRVLATMEYAGIAIDTEHLARVAETTELELQSLTDNIYA-AAGSSFN 573 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L T+T VL P A + + R Sbjct: 574 IDSPKQLSHVLFTDLSLPTGKSTKTGFSTDVGVLEELAATYPIASDLLSYR--------- 624 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + P PR R H +Q IT Sbjct: 625 ----------------------TLQKLKGTYIEALPKIINPRTGRIHTSFNQHITATGRL 662 Query: 350 ITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +S+P+ I + +R I S L+ AD + IE R+ A ++G++ + AF Sbjct: 663 SSSNPNLQNIPVRTALGKEIRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFR 722 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ T F +++ D R K + + Y +A + Sbjct: 723 NGEDIHTATAQVIFGT--EEISSDMRRKAKEVNFGVLYGIQPF---GLAKRLNIPQKEAK 777 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 +++T A + N R + E E ++ T R ++ +SR + Sbjct: 778 VIIETYKAK--YPQLFNVLRHII----EEGKEKGYVTTLLGR-RRYIADLNSRNGTVQKA 830 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLNT 582 +A T G A K + ++L L++ + + L Sbjct: 831 AERAAMNTPIQGTAADIIKCAMNLCYQQMQASGMASEMLLQVHDELLFETTDSEKEALT- 889 Query: 583 TTRQLTREYTYGGKLTEN 600 KL EN Sbjct: 890 -------------KLVEN 894 >gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43] Length = 926 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 88/553 (15%), Positives = 166/553 (30%), Gaps = 86/553 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---------LENT 64 D + ++ +F + H P +P L LE+ Sbjct: 354 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLPRDEVLAKLTPWLEDA 411 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + + ++ VL I TL+ + AL+ K Sbjct: 412 SRKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 469 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-- 182 + +++ + + EY D +T ++ + L P ++E Sbjct: 470 KYEDVAGKGAQQ----------IGFDEVPLDKASEYAAEDADITLQLHRALYPQVAREPG 519 Query: 183 ---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + + + + G +D + + +L+QE +L G + Sbjct: 520 LMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYALAGG-EFNL 578 Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ F L + +T + VL + P + +R Sbjct: 579 GSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 629 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P P R H Q + Sbjct: 630 ----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IA G K+V AD + IE R++A ++ ++ L+AF Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F V P +VT DQR I KV+ L Y + +AS G+ + Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAKL 784 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + ++ + E + G + + Sbjct: 785 YID--RYFLRYPGVAHYMEETRARAKERGYVETVFGRRL-----WLPEINGGNGPRRQAA 837 Query: 525 HQAFEQTIENGKA 537 +A G A Sbjct: 838 ERAAINAPMQGTA 850 >gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e] gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e] Length = 923 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 91/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L++E +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEREAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] Length = 917 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 113/706 (16%), Positives = 190/706 (26%), Gaps = 180/706 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-----MPQVL- 57 + +D ET S A D ++ +F H PQ L Sbjct: 336 IALDTETTSLQ----------AHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLP 385 Query: 58 --------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 K LE+ HN ++ VL+ I + +L P+ Sbjct: 386 LQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRA---GIELAGIAADSMLLAYCLYPA-- 440 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVT 168 K ++ + C + + E + Y D + Sbjct: 441 -------KYPPSLDSVAEDYLNYHCTPYSEVAGKGAKQVCFDEVPVSIATPYACEDADIA 493 Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + L E L + I G VD + L+ + +L Sbjct: 494 LRLTGLLSAQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAGLSTGFGLRIAEL 553 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274 + ++ + G + + ++L LF + T++ T Q VL Sbjct: 554 ESQIHA-AAGEKFNIQSPKQLGVLLFETLAIPGGKKTKSGQWATGQEVLEKLADEHEVPR 612 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R A + P R Sbjct: 613 LILQVRQLA-------------------------------KLKSTYTDALPKLIHRTTGR 641 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H +Q IT +SDP+ I +R IA EG L+ AD + IE R++ Sbjct: 642 VHTSFNQAITTTGRLSSSDPNLQNIPIRSAEGREIRKAFIAEEGHTLLAADYSQIELRLM 701 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +G+ AF GED++ T A +A V+ + R K + + Y A Sbjct: 702 AHFSGDAALCAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSAF--- 758 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A ++ +A+ F E +P Sbjct: 759 GLAKQLNISRG----------------EAQTFIDTYFERYP------------------- 783 Query: 510 WRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + + E G + R VP + +G Sbjct: 784 ---------SVRGFMDDTLVLAREQGYVETLLGHRVYVPEISSS-----------NGMRR 823 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGY 622 Y R+ +N Q + DI+ M + Sbjct: 824 AYA----ERTAINAPL------------------QGSAADIIKVAMIHLHRRLRQEAPAA 861 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL--PLKAE 666 I+L VHDE++ E P + +M A L PL + Sbjct: 862 AIILQVHDELIVEAPVD---QIDAVSAIMRQTMEQAVTLEVPLTVD 904 >gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5] gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5] Length = 881 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 93/557 (16%), Positives = 188/557 (33%), Gaps = 90/557 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPV---MP----Q 55 + ID ET S +A + ++ + + + D H MP Q Sbjct: 318 IAIDTETTSE----------HAVEADLVGISIAIGEQAWYVPIDHAHTDTHRNMPTADVQ 367 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGE 114 L AL+ +D+ +V N ++ VL+ ++ +P R T++ + + Sbjct: 368 KLITALDRSDLLLVGQNIKYDLIVLQRH-DMALPQPRLFDTMIASYLLDANRRSHGLDQL 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A++ S +M K+++ D + P Y D +T ++ Sbjct: 427 AVEFLSHEMIAFKDVV------PKGSTFRDVDIPTAA-------RYAGEDAAITLALYNL 473 Query: 175 LEPLSSKE-QELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P +E EL++ + + G VD + L++ +L++++ L Sbjct: 474 FAPRIEQEYHELFHAIEMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEKIYEL 533 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L T LF + G+ T+T +S + L PQ Sbjct: 534 A-GEAFNINSPKQLATLLFEKMGIPPVKKTKTGYSTDVSVLEALAPQ------------- 579 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ ++ Q+ S+ P R H +Q + + Sbjct: 580 ---YEIANVLT------------QYRMVSKLLSTYVNALSELINPWTGRIHTSFNQTVAN 624 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I VR + + G V AD + IE R+ A ++G++ LK Sbjct: 625 TGRLSSSDPNLQNIPIRTEEGREVRKAFVPAPGFCFVAADYSQIELRIAAHLSGDESMLK 684 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 +F +D++ T F + + R + K + + Y A K++ G+ Sbjct: 685 SFAEEKDIHAQTADAIFGSSE----PNYRRMAKAVNFGILYGISAF---KLSRDLGMTPK 737 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L+ + + + + EH G ++ +SR + Sbjct: 738 EGQALIDS--YFLRYPGVKAYIDHQIAFAREHGYAQTLYGR-----RRYLPDINSRNRNI 790 Query: 521 WNELHQAFEQTIENGKA 537 + G + Sbjct: 791 REAAERNAVNMPIQGTS 807 >gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] Length = 990 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 108/635 (17%), Positives = 194/635 (30%), Gaps = 141/635 (22%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + + N+ ++R +L +P+ + +LA L+ L Sbjct: 457 LASAEHPKALQNAKYDRLIL---LRHGLPLGGVVMDTLLADY------LRDANAKHGLEV 507 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++ L + YC DV VTR + L Sbjct: 508 LAQRN------LGFTPTSYGELVPKGASFAAVPVEAAALYCGMDVHVTRRLSPLLRRQLE 561 Query: 181 K------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + E L + + G +D A L++ + +L+ E + G Sbjct: 562 ELGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYLQELSEELGATLARLEAEARAA-AG 620 Query: 229 LVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + + ++L LF GL + T+T T VL + P V +R Sbjct: 621 VEFNLASPKQLGELLFDTLGLDRKKSRRTKTGWSTDANVLEKLEDDHPVVPLVLEHR--- 677 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S+ P P R H + +Q + Sbjct: 678 ----------------------------TLSKLKSTYVDALPSLMEPETGRVHTDFNQAV 709 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +S+P+ I S +R + EG L+ AD + IE R+L + GE+ Sbjct: 710 TATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWSLISADYSQIELRILTHLCGEEVL 769 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++A+ G+D++ T + VT D+R +GK + + Y GA Q+ A TG++ Sbjct: 770 VEAYRNGDDVHALTARLL--LDKEAVTPDERRLGKTINFGVIYGMGA---QRFARETGVS 824 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + + + + F E A+ ++ T R + Sbjct: 825 QSQAKDFL--SRYKQRYPKVFAFL----ELQERLALSRGYVETILGRRRP---------- 868 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 D + L L ++ + Sbjct: 869 --------------------------------FAFDPSGLGRHLGKD----PMEIDLEVA 892 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 Q R +Q S DI+ M++ +A ++L VHDE+ Sbjct: 893 RRGGLEAQQLRAAANAP------IQGSSADIIKLAMVHLQQALSQQALPARLLLQVHDEL 946 Query: 633 VCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 V E P+ + + M +PL E Sbjct: 947 VLEAAPEALDQVCDLTRQTMERAVQ--LTVPLVVE 979 >gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] Length = 945 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 120/671 (17%), Positives = 216/671 (32%), Gaps = 144/671 (21%) Query: 31 ILFAFGFDDHPVELWDCVH--DPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKAC 83 + +G V H +P L+ LE V N+ F+R VL Sbjct: 377 LGCCWGAAPDQVAYLPLGHKEGQNLPLEETLAALRPILEGDRYPKVLQNAKFDRLVL-RF 435 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK--GETHEC 141 + + + +LA P A + L K+L R+ +++ Sbjct: 436 QGIQL--RGVVFDTMLASYVINPEA------SHNL--------KDLCQRYLPLQAQSYRT 479 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWY-----LDQTI 192 L +++ + +YC DV T + ++LE P + + + Sbjct: 480 LVGKDQTLADLSPATVAQYCGLDVHTTYLLKEKLEADLTPRLRQLLLEVELPLEPILAEM 539 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G +D L+Q ++ + L Q+ G + ++L LF GL + Sbjct: 540 EATGIRIDSDYLRQLSQELEQQLAALQQQAWD-AVGQPFNLASPKQLSELLFGTLGLDTK 598 Query: 253 DLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 +T T L + P + ++R A Sbjct: 599 KTHKTKLGYSTDAATLEKLRGDHPVIDLILSHRTLA------------------------ 634 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362 + V P P R H E +Q +T +S P+ I S Sbjct: 635 -------KLKSTYVDVLPTLVRPDTGRVHTEFNQAVTATGRLSSSSPNLQNIPIRTEFSR 687 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R I G LV AD + IE R+LA ++ E L A++ G D++ T F + Sbjct: 688 QIRRAFIPEAGWLLVAADYSQIELRILAHLSQEPALLAAYQEGADVHRLTAQ--FLLEKT 745 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 ++ +R +GK++ + Y G Q+ A G+++ ++ + ++ Sbjct: 746 DISSSERRLGKMINFGVIYGMGP---QRFAREAGVSVAEAKVFIQRFYNR--YPRVFDYL 800 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 R M+ + I+ R+ Sbjct: 801 RQMERLALSQGYVE----------------------------------------TILGRR 820 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 R Y + L L V DV ++ ++ R L R + Sbjct: 821 R------YFAFESRELQ-SLRGKPLDVLADVDPSKLKMSNYERGLLRAAANAP------I 867 Query: 603 QAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSW 657 Q S DI+ M+ ++L VHDE+V E TP+ E + + +M++ Sbjct: 868 QGSSADIIKCAMVKLAPLLPPEKARLLLQVHDELVLEMTPEAWEHLQTTIPEVMSTAVP- 926 Query: 658 AKGLPLKAEGY 668 +PL + Y Sbjct: 927 -LSVPLAVDIY 936 >gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 896 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 90/539 (16%), Positives = 177/539 (32%), Gaps = 71/539 (13%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 ++ +LK ++ + VAHN F+ VL + I +++ T+++A Sbjct: 368 EIVLDILKPIFVDSQKSKVAHNFKFDEKVLSKY-GVKI-VNQVNDTMIMAYVLKSSGKHD 425 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169 LS + + G E IA T RN+ + +Y D +T Sbjct: 426 MDS----LSKEHL--GIEPIAY-----TTLAGTGRNQLTLDQIDIEKVAKYAAEDADITF 474 Query: 170 EIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + ++ L+ L + G +D + ++ +L Sbjct: 475 RLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMERIGVKIDATKLIEQSANLEDSIKEL 534 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + L G + +L+ LF + GL T + ++ Sbjct: 535 EIKCYDLA-GQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIAA 593 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 M+ + S+ P L R H Sbjct: 594 LIMK---------------------------YRHLSKLKNTYTDKLPKM-LDVNGRVHTS 625 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R +A + +V AD + IE R++A ++ Sbjct: 626 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFVAEQEFCVVAADYSQIELRIMAHLS 685 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LKAF G D++ T A ++ VT +QR K + L Y A +A Sbjct: 686 KDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAF---GLAK 742 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + Sbjct: 743 QLEIPRGEAQEYIDVYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPDI 795 Query: 514 HSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 S+ N +A G A II + DV + +++ +++ +++ LV+ Sbjct: 796 SSKNVIQRNAAERAAINAPMQGTAADIIKKAMIDVNTMILREYNDDIKMVMQVHDELVF 854 >gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO] gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO] Length = 892 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 130/699 (18%), Positives = 222/699 (31%), Gaps = 173/699 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------LK 58 +D ET S + D +I F+ H LK Sbjct: 321 LDLETDSLSPI----------DAEIIGFSISLPSKESYYVPLAHKNGPNVDKKSALNNLK 370 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEAL 116 LEN I+ N ++ +VLK I R ++A P A+ Sbjct: 371 SILENQSAKIIGQNLKYDYSVLKMH---GIEPVRPSFDTMIAAYLLNPDEKRFNLDELAM 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--- 173 K + KM +EL + +Y D +TR +++ Sbjct: 428 KFLNYKMISFEELFK-------DTSPLFGAVTFADVSVEDATKYSAEDADITRRLYEILN 480 Query: 174 -------RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 LE L E L + + G +++ L+ +L Q++ + Sbjct: 481 IKLHEADLLEVLEKIEMPLIPVLVHMELEGVYMNIDYLKDLSSKYAARMNELSQQIYNHA 540 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + +++ LF + + T T T VL + P Sbjct: 541 -GEAFNLNSPKQVAHILFDKLKIQPTKKTSTGEPSTRADVLEELSEEHPIV--------- 590 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 R L++ + V P P R H Q Sbjct: 591 ----------------------RLILEYRKYQKIKSTYLDVLPKLVHPETGRIHSSFHQT 628 Query: 343 ITHLPTSITSDPDPLQIIS-----DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQ 396 T +SDP+ + S +R V+ K++ AD + IE RVLA ++ +Q Sbjct: 629 GTATGRLSSSDPNLQNLPSKQEESREIRKAVVPQRDSWKILSADYSQIELRVLAHLSNDQ 688 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF+ ED++ T +R F V QVT R+IGK++ ++ Y + TG Sbjct: 689 NLIEAFKKDEDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSPYGLSQ---RTG 745 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+ ++ A+ F +P VK+ + + S Sbjct: 746 LS----------------YDQAQKFIGEYFSLYP--------------SVKEYFAKIVS- 774 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS--LVYRDVG 574 + +T + + R+R +P RS R G Sbjct: 775 -----------YAKTHGYVRTMFGRRR-----------------EVPQLRSKNASVRQEG 806 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628 R +NT +Q + DI+ M+N + ++L V Sbjct: 807 E-RIAINTP------------------IQGTAADIMKLAMINLYDKIKQMRLQSKMILQV 847 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E PD + E +++ M + +PLK + Sbjct: 848 HDELVFEVPDEEVEIVKNLVRDSMENVV--RLSVPLKVD 884 >gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21] gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21] Length = 928 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 97/612 (15%), Positives = 188/612 (30%), Gaps = 79/612 (12%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQVLKEALENTDVTI 68 D G C L F + W D + Q K EN + Sbjct: 360 DTETTGTDA----NCCELVGLSFSVEKGQAWYVPASADQKEAHALVQQFKPVFENPAIGK 415 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + N F+ VL D+ + + +LA P + LS + Sbjct: 416 IGQNLKFDILVLSWY---DVKVAGELFDTMLAHYLIDPETRHGMD---VLSENYLGYTPV 469 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179 I + L R + +Y D +T ++ + EP+ Sbjct: 470 SITTLIGPKGKGQLNMR-----DVDPKTVSDYAAEDADITLQLKEIFEPMLIKVEADKLA 524 Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L + + G +DV + + E L+ + G+ + ++ Sbjct: 525 HEVEFPLVPVLVDMERVGVRIDVKALSDFSLAIQNEVQILEARIYEKA-GVPFNIASPKQ 583 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L LF + +L P+A + + + ++ L + + Sbjct: 584 LGEVLFDKL--------------------QLDPKAKKTKTGQYQTGEDVLMALANKSDIV 623 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 L++ + P + R H +Q + +++P+ Sbjct: 624 QD------ILEYRQLQKLRSTYVDALPQLINTKTGRVHTSYNQAVAATGRLSSNNPNLQN 677 Query: 359 II-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I VR IA + ++ AD + IE R++A ++ + L AF G D++ T Sbjct: 678 IPIRTERGREVRKAFIARDDEHVILSADYSQIELRLIAEISKDANMLDAFAKGLDIHTAT 737 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A+ + V +VT +QR K + + Y A + + G+ A +++ Sbjct: 738 AAKVYGVGLEEVTGNQRRNAKAVNFGIIYGQSAFGLSQ---SLGIPRREAADMIEQYFIQ 794 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 R N A E ++ T +R ++ R +S + + + Sbjct: 795 YP------GIRDYMNNTIAFAKEHGYVETLLKR-RRYLRDINSANATVRGFAERNAINAP 847 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLN--TTTRQLT 588 G A K + ++ + NL + + LV+ N + R Sbjct: 848 IQGSAADLIKIAMIH-IHQDIQQANLKGKMTMQVHDELVFDVPRNEVAAFKEIIEARMKG 906 Query: 589 REYTYGGKLTEN 600 T + E Sbjct: 907 ALKTEVPIVVEI 918 >gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1] gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1] Length = 920 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 116/683 (16%), Positives = 202/683 (29%), Gaps = 152/683 (22%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64 D + ++ +F + H P MP+ L K LE+ Sbjct: 348 DTETTALDPMV--ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVLARLKSWLESP 405 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 D V + ++ VL I TL+ + AL+ K Sbjct: 406 DRKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 463 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + +++ + K + + + +T ++ + L P ++E Sbjct: 464 KYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHRALYPQIAREPG 513 Query: 185 LWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + I G +D A + + L+ + +L G + Sbjct: 514 LERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDLEAQAYALAGG-EFNL 572 Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ F + L + +T + VL + P + +R Sbjct: 573 GSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 623 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P P R H Q + Sbjct: 624 ----------------------GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 661 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IA+ G ++V AD + IE R++A ++G+ L+AF Sbjct: 662 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 721 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F V P +V DQR I KV+ L Y A +AS G+ + Sbjct: 722 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAF---GLASNLGITRDAAKL 778 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + A E+ A E ++ T R + + + Sbjct: 779 YIDRYFARYP------GVAQYMEDTRATAKERGYVETVFGR-RLWLPEINGGNGPRRQAA 831 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A G A K + + L Sbjct: 832 ERAAINAPMQGTAADLIKLSMIAV------DGWL-------------------------- 859 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643 +RD LA M ++ VHDE+V E PD + Sbjct: 860 ---------------------TRDKLASRM----------IMQVHDELVLEVPDDELSLV 888 Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666 L +M +PL AE Sbjct: 889 REKLPEMMCGVAK--LKVPLVAE 909 >gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1] Length = 897 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 87/513 (16%), Positives = 161/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L + E L + + G +D + ++ +L+ + Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P L R H Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA +G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LKAF D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH] Length = 926 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 88/553 (15%), Positives = 163/553 (29%), Gaps = 86/553 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---------LENT 64 D + ++ +F + H P MP L LE+ Sbjct: 354 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + + ++ VL I TL+ + AL+ + Sbjct: 412 SKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVRTI 469 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + +++ + + EY D +T ++ L P ++E Sbjct: 470 KYEDVAGKGAQQ----------IGFDEVPLEQASEYAAEDADITLQLHHALYPQIAREPG 519 Query: 185 LW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + + G +D + + +L+Q+ L G + Sbjct: 520 LARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEIATRLIELEQQAYGLAGG-EFNL 578 Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ F L + +T + VL + P + +R Sbjct: 579 GSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 629 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P P R H Q + Sbjct: 630 ----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IA G K+V AD + IE R++A ++ ++ L+AF Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAN 727 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F V P +VT DQR I KV+ L Y + +AS G+ + Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAKL 784 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + + + E + G + + Sbjct: 785 YID--RYFLRYPGVARYMEETRARAKEKGYVETVFGRRL-----WLPEINGGNGPRRQAA 837 Query: 525 HQAFEQTIENGKA 537 +A G A Sbjct: 838 ERAAINAPMQGTA 850 >gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] Length = 957 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 110/693 (15%), Positives = 213/693 (30%), Gaps = 165/693 (23%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDH--------PV-----ELWDCVHDPVMPQVLKEA 60 IDL G+ +++ A+ PV + + + Q LK Sbjct: 379 IDLETTGLDPLRDEIVGWAIAWAAQHGQPGRAVYLPVLGPPGSV--LLDGTAVVQTLKPI 436 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 LEN ++ N F+ ++ I ++ L A + L Sbjct: 437 LENPQCQLINQNVKFDLLAMRKV---GIRPATIGLDTMVGDYL-----LDAGARSHNLEV 488 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVT--------VTREI 171 G++ ++ + +N+ + EY D + ++ Sbjct: 489 L----GQKYLSAATIPISDLLGSGKNQKTMNQIEIERVAEYATEDAELVVRMAPIIESQL 544 Query: 172 FK--RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + + E+ L + + +G VDV +Q + + +L E+ L G Sbjct: 545 QEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQSQELSITLARLMSEIHELA-GR 603 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +L+ LF E L ++ T+T T Q VL L P ++ +R Sbjct: 604 EFNIDSPMQLRKILFEELKLPVQKKTKTGPSTDQEVLELLAPLHPLPAKITEHR------ 657 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ P P+ R H +Q++ Sbjct: 658 -------------------------HLTKLKGTYLDALPLLVHPQSGRIHTSFNQVVAAT 692 Query: 347 PTSITSDPDPLQII-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R + +LV AD + IE R+LA + + + Sbjct: 693 GRLSSSDPNLQNIPIRTPEGSRIRRAFVSCDPEWRLVCADYSQIELRMLAHFSQDPALVS 752 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE GED++ A+ VA VT D R I K + + Y +++ G++ Sbjct: 753 AFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMYGQSPY---GLSAALGISRE 809 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + +A F+ + Sbjct: 810 AATTFIDEYFTR-------------------YAGVTTFMENVLDECL------------- 837 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + I+ R+R + ++ N R++ R+ + Sbjct: 838 ----------ATGYARTILGRRRPIEGVRGPRERNRN--------RNMA------ERTGI 873 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVC 634 NT ++Q + D++ M+ ++L +HDE+V Sbjct: 874 NT------------------VIQGSAADLIKMAMIRVHHRLERENHPGQLLLQIHDELVL 915 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E P E +++ MT +PL+ + Sbjct: 916 EAPAHLAEELGALVSEEMTKALP--LDVPLEVD 946 >gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489] gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489] Length = 929 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 102/631 (16%), Positives = 203/631 (32%), Gaps = 140/631 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L++ ++T+V HN F+ VL A + I ++A P+A +L Sbjct: 405 LEKLFAEKELTLVMHNGKFDLEVLAAN-GMSAKTECKIFDTMIAAWLLNPAASGKSPYSL 463 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + ++ KG + + +N+ +Y D T +++ L+ Sbjct: 464 EFLAET--------KLGLKGIEFKDIVQKNQTFADVPLEKAFKYGAEDSDFTLQLYYLLK 515 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 K E ++ + ++ +G +D + + V ++ ++E+ Sbjct: 516 DEIKKSNLEKLFYEMEMKVLPILVSMEIQGIHLDKKKLNEYKDELAVLISEKEKEIYKEA 575 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G + ++L+ LF + L T+T + ++L Sbjct: 576 -GCEFNIASPKQLQEILFEKRNLPHGKKTKTGYSTDTAVLEELVFSTNDPLP-------- 626 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + L + ++ P + R H Q T Sbjct: 627 ------------------KMILDYRSYTKLQSTYVEALPLLAD-KNGRIHTSFLQTGTAT 667 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +RS A G L+ AD + IE VLA ++G++ A Sbjct: 668 GRLSSRDPNLQNIPVRDESGRRIRSAFTAVPGTVLISADYSQIELVVLAHLSGDKNLCSA 727 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ +T A + ++P QV +QR K + + Y A ++A+ ++ Sbjct: 728 FINGIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAF---RLANELNISRTE 784 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + D + F + E+ + Sbjct: 785 AKNFID--QYFSTYSDVKKFLDETKRMARENGYVE------------------------- 817 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 I +RR +P + ++L G R +N Sbjct: 818 ----------------TITGRRRYIPEIKSSSK-----IVLQ----------GAERIAIN 846 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 T +Q + DI+ M+ A G ++L VHDE++ E Sbjct: 847 TP------------------IQGSAADIVKTAMIKVQAALEKSGTGAKMLLQVHDELIFE 888 Query: 636 TPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 P+ + NA + M + +PL+ Sbjct: 889 CPEDNAGNAISIIQREMENAVQ--LKIPLRV 917 >gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] Length = 890 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 127/677 (18%), Positives = 207/677 (30%), Gaps = 178/677 (26%) Query: 3 TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--------VELWDCVHDPVMP 54 L ID ET S + A+ L F P W +P P Sbjct: 315 QLAIDTETTSLDPIR-------AD-----LVGFSLCVSPGLAYYAPLAHDWP-ADEPQAP 361 Query: 55 -----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109 +L +AL + + + N ++ VL+ + + + ++A P+ Sbjct: 362 RRQALDLLGQALADPGLLKIGQNLKYDLNVLRRA---GLSVAGPLFDTMVADYLLNPAK- 417 Query: 110 KAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + L + E G+ +I E + Y D V Sbjct: 418 ----ASHGLEAIAAEHLGRGVIGF----EEAVGGKGKGFAQAPP--ERAVPYAAEDADVA 467 Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L P + E L L + G +D L+ +D Sbjct: 468 LQAAQALGPKLDEADLRRLFDELEMPLTPLLAKMERYGVLIDAEELGRLSAELDQALAAG 527 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQA 273 +Q++ +L G + ++L LF E GL T+ T VL+ P Sbjct: 528 EQKIYALA-GHEFNINSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHPLP 586 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 +V R A + P P Sbjct: 587 AEVLAYRANA-------------------------------KLKSTYVDALPALINPDTG 615 Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q +T +SDP+ I + +R C + + G+ LV AD + IE RV Sbjct: 616 RVHTSFNQCVTATGRLSSSDPNLQNIPVRGELGRRMRGCFVPAPGRLLVSADYSQIELRV 675 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA ++ + L+ G D++ T AR F+V P VT++ R K + + Y G AF Sbjct: 676 LAHLSQDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLY--GMSAF 733 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 R +E A + I R + Sbjct: 734 ----------------------------------RLAREQGVSRAEAEDIIARYLGRYQG 759 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 R + +S+ I+ R+R LP Sbjct: 760 VARFQQQNLSQCRQ---------RGYVTTILGRRR-----------------FLP----- 788 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------Y 622 +N++ RQ RE L I Q + DI+ M+ + Sbjct: 789 ----------AINSSDRQ-AREAAERVALNTPI-QGSAADIIKLAMLRVDEMLTRHYPDS 836 Query: 623 DIVLTVHDEIVCETPDT 639 ++L VHDE+V ETP+ Sbjct: 837 PMILQVHDELVFETPEG 853 >gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp. novicida GA99-3549] gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549] gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] Length = 897 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 87/513 (16%), Positives = 163/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L +++ L+ L + G +D A + ++ +L+ + Sbjct: 480 HFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKMGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + S+ P L R H Sbjct: 599 -------------------------------YRHLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LKAF D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217] gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217] Length = 936 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 99/654 (15%), Positives = 181/654 (27%), Gaps = 157/654 (24%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D + + MP LK LE+ + + N ++ + A I + T++++ Sbjct: 398 DKMAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFAA---RGITVEPIDDTMLMS 454 Query: 101 RSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + + + K L+ T R + Sbjct: 455 YALHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVT----------FDRVPVDEAVK 504 Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209 Y D +T ++ +P + E+ L + + G VD A ++ Sbjct: 505 YAAEDADITLRLWLTFKPQLHRARVTTVYETLERPLVPVLAQMERYGVKVDRATLRAMSG 564 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 + L+ E+ L G + ++L LF E GL + +T T VL Sbjct: 565 KFAQKMAALESEIHELA-GRSFNVGSPKQLGEILFDEMGLSGGEKGKTGAYATGADVLED 623 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +V + R S+ Sbjct: 624 LATEHELPARVLDWRQL-------------------------------SKLKSTYTDALQ 652 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 P R H Q + ++DP+ I +R +A+ G +LV D Sbjct: 653 DHIDPDTGRVHTSYVQAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAASGHRLVSLD 712 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +A + +AF G D++ T + FNV Q+T + R K + + Sbjct: 713 YSQIELRILAHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAINFGVI 772 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y + +A+ F E P Sbjct: 773 YGISGFGLARNLRI-------------------PRSEAQGFIDRYFERFP---------- 803 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +K + K + + Sbjct: 804 ----GIKDYMDA------------------------TVAFAKEHGYVQTLFGRK-----I 830 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616 P + R R+ +N +Q + DI+ M+ Sbjct: 831 HTPEISAKGPRAGFARRAAINAP------------------IQGSAADIIRRAMIRMPDA 872 Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E + + +M S A +PL + Sbjct: 873 IEGLPCKMLLQVHDELIFEVAEEATDRLIEIARDVMQGAASPAVHLDVPLVVDA 926 >gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] Length = 897 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 87/513 (16%), Positives = 161/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TVIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L + E L + + G +D + ++ +L+ + Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P L R H Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA +G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LKAF D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] Length = 917 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 116/683 (16%), Positives = 202/683 (29%), Gaps = 152/683 (22%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64 D + ++ +F + H P MP+ L K LE+ Sbjct: 345 DTETTALDPMV--ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVLARLKPWLESP 402 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 D V + ++ VL I TL+ + AL+ K Sbjct: 403 DRKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 460 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + +++ + K + + + +T ++ + L P ++E Sbjct: 461 KYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHRALYPQIAREPG 510 Query: 185 LWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + I G +D A + + L+ + +L G + Sbjct: 511 LERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDLEAQAYALAGG-EFNL 569 Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ F + L + +T + VL + P + +R Sbjct: 570 GSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 620 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P P R H Q + Sbjct: 621 ----------------------GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 658 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IA+ G ++V AD + IE R++A ++G+ L+AF Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 718 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F V P +V DQR I KV+ L Y A +AS G+ + Sbjct: 719 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAF---GLASNLGITRDAAKL 775 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + A E+ A E ++ T R + + + Sbjct: 776 YIDRYFARYP------GVAQYMEDTRATAKERGYVETVFGR-RLWLPEINGGNGPRRQAA 828 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A G A K + + L Sbjct: 829 ERAAINAPMQGTAADLIKLSMIAV------DGWL-------------------------- 856 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643 +RD LA M ++ VHDE+V E PD + Sbjct: 857 ---------------------TRDKLASRM----------IMQVHDELVLEVPDDELSLV 885 Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666 L +M +PL AE Sbjct: 886 REKLPEMMCGVAK--LKVPLVAE 906 >gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra magnipapillata] Length = 542 Score = 258 bits (659), Expect = 3e-66, Method: Composition-based stats. Identities = 108/637 (16%), Positives = 198/637 (31%), Gaps = 153/637 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115 LK LEN + + ++R V N I + + T++ + A Sbjct: 21 LKPWLENPQALKLVQHIKYDRHV---FANHGIEVQGYAHDTMLQSYVLEADKPHGLASLA 77 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + ++L C ++ +D + EY D T ++ L Sbjct: 78 ERHLGRSGISFEDL----CGKGANQISFD------QVDIAKAAEYACEDSDQTLDVHLVL 127 Query: 176 EPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P +L ++ + I G +D + + +L+ E + Sbjct: 128 WPQIEANDKLKFIYELEIASSEALYRIERNGVLIDAPTLAAQSHELGQRILQLETEAYEI 187 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L F + G+ + T T T + VL + P ++ +R Sbjct: 188 A-GQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRS 246 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A A LPR R H Q Sbjct: 247 LAKLKGTYTDKLAQLA-------------------------------LPRTGRVHTHYAQ 275 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I VR +A+ G + AD + IE R++A ++ + Sbjct: 276 AVAVTGRLSSNDPNLQNIPIRTAEGRRVREAFVAAPGCVIASADYSQIELRIMAHISDDP 335 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF G D++ T A F V QV+ +QR KV+ L Y A +A G Sbjct: 336 ALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKVINFGLIYGMSAF---GLARNLG 392 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ A+N+ + E +P Sbjct: 393 IDNTA----------------AKNYIQRYFERYP-------------------------- 410 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + +A+++ V V+ GR L + N Sbjct: 411 -----------GVKAYMESTRELAKRQGYVETVF--------------GRRLQLAGIKNA 445 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHD 630 + L R +Q + D++ M ++A +++ VHD Sbjct: 446 K---GAQLAGLERAAINAP------MQGTAADLIKLSMVKVQQVLDAQNKSTKMIMQVHD 496 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E+V E P + ++ + + LM +PL AE Sbjct: 497 ELVFEVPQDEVDWVRTEIPSLMAGVAE--LKVPLLAE 531 >gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated bacterium] Length = 206 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 129/206 (62%), Gaps = 2/206 (0%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 M+ LFID ETRSP L K G+ YAE + L A+ +D PV+LWD +P L + Sbjct: 1 MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL+ Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120 Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 K EEGK LIARFCKG YD + NH +AW LF EYCK DV TRE+FK L PL Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180 Query: 179 SSKEQELWYLDQTINDRGYCVDVALA 204 + +E+ LW LDQ INDRGY +D+ L Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDLV 206 >gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112] gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112] gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] Length = 897 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 88/513 (17%), Positives = 163/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L +++ L+ L + G +D A + ++ +L+ + Sbjct: 480 HFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSVSLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P L R H Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LKAF D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1] gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1] Length = 923 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 102/601 (16%), Positives = 185/601 (30%), Gaps = 99/601 (16%) Query: 6 IDFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 +D ET S + G+ +E + F + PV+L +L+ L Sbjct: 347 LDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPLL 402 Query: 62 ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 E+ V V + ++ VL+ + D + ++ T AR + A + +G Sbjct: 403 EDPAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYE 462 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +G + I P + +Y D +T + L Sbjct: 463 TMKYVDLVGKGAKQI-----------------PFSHVGVQEATQYAAEDADITLRLHCVL 505 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P E L + + I G +D + + + Q+ Sbjct: 506 APKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMD 565 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF E L + +T + L + Sbjct: 566 LA-GRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP------- 617 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R L++ ++ P P R H Sbjct: 618 ------------------------RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYH 653 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +SDP+ I +R +A G+KL+ D + IE R++A ++G+ Sbjct: 654 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ A F +VT ++R K + L Y A +A Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAF---GLARQL 770 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + D R EN + A + ++ T R + S Sbjct: 771 GISRGEAQDYIA------LYFDRFAGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIAS 823 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A KR V + L + R+L+ V + Sbjct: 824 GNQTQRAGAERAAINAPMQGTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHD 877 Query: 576 N 576 Sbjct: 878 E 878 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 18/172 (10%) Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN- 556 G + V R+ ++ AF + G I + +D +Y + Sbjct: 734 VFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLG--ISRGEAQDYIALYFDRFAGV 791 Query: 557 --NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILA 611 + R Y + V R YLN+ Q R +Q + DI+ Sbjct: 792 RDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA-AINAPMQGTAADIIK 850 Query: 612 EGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN 654 M+ + ++L VHDE+V E + + M + Sbjct: 851 RAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902 >gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215] Length = 923 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 93/561 (16%), Positives = 165/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 351 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L + + + ++ VL I TL+ + AL Sbjct: 401 LTPWLGDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 459 RHLGVKTIKYEDVAGKGAQQ----------IGFDEVPLAQASEYAAEDADITLQLHHALY 508 Query: 177 PLSSKEQEL--WYLDQT---------INDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L Y D + G +D + + L+QE +L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 568 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 569 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 626 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 627 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 656 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 657 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 716 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 717 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 773 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 774 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 826 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 827 NGPRRQAAERAAINAPMQGTA 847 >gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] Length = 946 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 114/682 (16%), Positives = 204/682 (29%), Gaps = 172/682 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV------L 57 L +D ET S + L P + W L Sbjct: 375 LAVDTETTS------------LDTFQAELVGISLSIKPKQAWFVYFGKGGVDRRVALDML 422 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEAL 116 K LEN + N ++ VLK I I+ +LA P A AL Sbjct: 423 KPVLENPSLRKTGQNLKYDLLVLKKY---GIDINPVAFDTMLASYVLDPEAKHNLDDLAL 479 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + S K EL+A K + + +Y D + + + + Sbjct: 480 RHLSIKTTTYDELVADGKKKMSILDVPPGEL----------SDYACQDADLALRLQEVFK 529 Query: 177 PLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +E++L +L + I G +D V + +L +++ Sbjct: 530 EKLLQEKDLLWLCENIEFPLVPVLATMEYHGISIDTDHLKKTETTVSKQIGQLSEKIFE- 588 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282 G V + ++L LF GL T+T +VL + P A + R Sbjct: 589 ASGRVFNLDSPKQLAHILFDILGLPSGKATKTGFSTNVQVLEDLAPIHPVAQDLLEYRSL 648 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + P P + H +Q Sbjct: 649 -------------------------------QKLRNTYIEALPKMINPLTGKLHTSFNQH 677 Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396 +T +S P+ I I +R I S + L+ AD + IE RV A ++G++ Sbjct: 678 VTATGRLSSSHPNLQNIPIRTLIGKEIRRAFIPSNPENLLLSADYSQIELRVAAEISGDE 737 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF ED++ T FN ++T + R K + + Y ++ Sbjct: 738 KLMEAFRNREDIHSATARTIFNTT--EITPEMRRKAKEVNFGVLYGIMPF---GLSRRLN 792 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ N +++ T E++ N + + E ++ T R R+ Sbjct: 793 ISRNEAKNIIDT--YTEKYPGIFNALQQIIS----DGKERGYVSTLLGR-----RRYIPD 841 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 ++ + +A Sbjct: 842 LNSRNKNMQKAA-----------------------------------------------E 854 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHD 630 R+ +NT +Q + DI+ M + K ++L VHD Sbjct: 855 RAAMNTP------------------IQGTAADIIKCAMNLCSTQLRLHKMKSVMLLQVHD 896 Query: 631 EIVCETPDTDEFNASML-YHLM 651 E++ ETP+ ++ L +M Sbjct: 897 ELLFETPENEKHRLKTLVEEVM 918 >gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894] Length = 625 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 53 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 102 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 103 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 160 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 161 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 210 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 211 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 270 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 271 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 328 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 329 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 358 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 359 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 418 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 419 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 475 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 476 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 528 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 529 NGPRRQAAERAAINAPMQGTA 549 >gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946] gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946] Length = 846 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 103/552 (18%), Positives = 183/552 (33%), Gaps = 147/552 (26%) Query: 148 PNHREAWRLFGEYCKGD--------VTVTREIFKRLEPLSSKEQELWYLDQT-------- 191 P + E Y GD +++ L + ++ LW+L + Sbjct: 396 PANSEPASTVRRYGAGDLVADPVSHAQAAWLLWETLSARTQGDERLWWLYREVEKPLAAV 455 Query: 192 ---INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + RG +DV L++ + E L+ E+ L G + ++L+ L+ E G Sbjct: 456 LAQMECRGVALDVPYLQELSEELGKELGYLEAEIHRLA-GHPFNVNSRDQLEAILYDELG 514 Query: 249 LHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L TT +R VL + L P ++ + R A Sbjct: 515 LQAGGKKTTTGKRSTAASVLEEMRSLHPIVGKILDYRELA-------------------- 554 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 + P P+ R H +Q + +SDP+ I Sbjct: 555 -----------KLKGTYLDPLPKLIHPKTGRLHTRFNQTVAATGRLSSSDPNLQNIPVRT 603 Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +A +G LVVAD + IE R+LA ++G++ K F D++ T A F Sbjct: 604 EVGRKIRKAFVAEKGYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFG 663 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 + P +V R K + + Y A +++ G++ + +A Sbjct: 664 LEPEKVDPQHRRAAKTINFGVLYGMSA---HRLSGELGIS----------------YAEA 704 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 F ++P+ LW E+T+ G Sbjct: 705 SGFIERYFASYPK--------------------------VRLW------IEKTLAEG--- 729 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+R V ++ ++ + L S + R N Sbjct: 730 --RERGYVETMFGRRR---FVADLESKNRAI--KEAAERMAFNMP--------------- 767 Query: 599 ENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPD-TDEFNASMLYHLMTS 653 VQ + D++ M + G +VL VHDE+V E P+ + A ++ +M + Sbjct: 768 ---VQGTAADLMKLAMVKLYPKLKERGAHLVLQVHDELVVEAPEPLAKEVAEVMCEVMQN 824 Query: 654 NPSWAKGLPLKA 665 W +PL+ Sbjct: 825 V--WELDVPLEV 834 >gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136] Length = 971 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 85/564 (15%), Positives = 172/564 (30%), Gaps = 84/564 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 + +K L + + HN F+ R L + P + L + Sbjct: 442 KEVKTFLSTSKAEKIGHNLKFDLRVFLAHGIEVAGPFFDTMLVHALVEPD---------- 491 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-----GEYCKGDVTVT 168 M+ E + + ++ +++ EY D VT Sbjct: 492 -----QRHGMDYLSERYLGYSPVSITTLIGEKKGATPQKSMAEVPLEPLAEYAAEDADVT 546 Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 ++ ++L P + E L + + G VDV Q + + L Sbjct: 547 LQLSQKLRPELERLGLMKVFYEIEAPLLPVLAHMEHEGVKVDVPTLEEFGQELLSQANVL 606 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQA 273 + ++ + ++L LF L T T T ++ L + + P Sbjct: 607 RERIQG-YVDWPFNLNSPKQLGEVLFDHLKLMEKPKKTATGQYQTNEQTLLTLQGRHPII 665 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + + ++ P P Sbjct: 666 DDILA-------------------------------YRECTKLKSTYVDALPAAVNPLTH 694 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387 R H Q++ ++DP+ I +R + EG L+ AD + IE R Sbjct: 695 RVHTTFHQLMAATGRMASTDPNLQNIPIRTDQGREIRKAFVPEKEGWVLMSADYSQIELR 754 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 V+A ++ + ++AF+ G D++ T A+ + VA +V + R K++ + Y A Sbjct: 755 VMAELSADPAMMEAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYGISAFG 814 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + T + A ++ E + + E+ A ++ T R + Sbjct: 815 LSQRLGNT--SRTEAAQII------ENYFKQYPGVKRYMEDIVTQARTQGYVETLTGR-R 865 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGR 566 + R +S + + + G A K V + ++ ++L Sbjct: 866 RYLRDINSSNMTVRSATERVAMNAPIQGTAADMIKLAMVNVARSLREGGFKTRMLLQVHD 925 Query: 567 SLVYRDVGNNRSYLNTTTRQLTRE 590 L++ + Q RE Sbjct: 926 ELLFEVPLEEVDKVKPVIEQGMRE 949 >gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14] Length = 619 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 47 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 96 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 97 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 154 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 155 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 204 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 205 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 264 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 265 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 322 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 323 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 352 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 353 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 412 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 413 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 469 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 470 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 522 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 523 NGPRRQAAERAAINAPMQGTA 543 >gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523] Length = 897 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 91/519 (17%), Positives = 165/519 (31%), Gaps = 79/519 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK + VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKPLFADVKKAKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172 LS + + G E IA T +++ + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY-----TAIAGTGKHQQTLDQIDIEIVAKYAAEDADITFRLF 478 Query: 173 KRLEPLSSKEQELWYLDQTIND-----------RGYCVDVALAHTLNQIVDVERTKLDQE 221 + L +++ L+ L I G +D + ++ +L+ + Sbjct: 479 NHFKALLEQDETLYKLYCEIEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277 +L G + +L+ LF + GL T T + VL + A + Sbjct: 539 CYNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIM 597 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R S+ P L SR H Sbjct: 598 KYR-------------------------------HLSKLKNTYTDKLPKM-LDVNSRVHT 625 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +Q T +SDP+ I +R IA G +V AD + IE R++A + Sbjct: 626 SYNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHL 685 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ LKAF D++ T A + +V+ +QR K + L Y A +A Sbjct: 686 SKDKNLLKAFNQSLDIHSATAAEVLGIGIDEVSSEQRRKAKAINFGLIYGMSAF---GLA 742 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + + E A ++ ++ T R + + Sbjct: 743 KQLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPE 795 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 +S+ N +A G A K+ + + M Sbjct: 796 INSKNVMQRNAAERAAINAPMQGTAADIIKKAMIDVNTM 834 >gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112] Length = 618 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 46 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 95 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 96 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 153 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 154 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 203 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 204 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 263 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 264 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 321 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 322 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 351 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 352 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 411 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 412 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 468 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 469 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 521 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 522 NGPRRQAAERAAINAPMQGTA 542 >gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] Length = 897 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L + E L + + G +D + ++ +L+ + Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTTILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P L R H Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA +G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LK F D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134] gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134] Length = 955 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 104/600 (17%), Positives = 196/600 (32%), Gaps = 95/600 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALE 62 D ET S + A+D ++ AF D + KE E Sbjct: 368 DTETTSLV----------AQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEFKEVFE 417 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQ 121 + + +A N ++ VLK N I +LA P A + Sbjct: 418 DESIGKIAQNLKYDWVVLK---NYGIEPKGKFFDTMLAHYLLQPDMRHNMDVLAKSYLNY 474 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-------- 173 + E LI + KG+ + D EY D +T ++ + Sbjct: 475 EPVEITSLIGK--KGKKQGSMRD-------VELDKITEYAGEDADITLQLKEIFDAQIKA 525 Query: 174 ---------------RLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 LE L + E L + T+ G +D L++ + E Sbjct: 526 QDLRHPAPEDGGEKVTLEKLLDEVETPLIEVLATVETNGVRLDSESLAKLSKELAKEVVV 585 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277 L++++ + G + ++L LF + L L+ + T ++ +++ Sbjct: 586 LEEKIYKIA-GEQFNIASPKQLGEILFGK--LQLDPKAKKTKSGQYATGEEI-------- 634 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 LV+ + + ++ L F G + P + H Sbjct: 635 ----------------LVKLADKNEIVQHILDFRGLQKLKNTYVDALPELVNKKTGLIHT 678 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391 +Q + +++P+ I VR I + L+ AD + IE R++A Sbjct: 679 SYNQAVAATGRLSSTNPNLQNIPIRTAQGREVRRAFIPRSDEFVLLAADYSQIELRIMAE 738 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 + + +KAF+ GED++ TT ++ + V QV D R K + Y A + Sbjct: 739 FSQDATMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTANFGIIYGISA---HGL 795 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + + ++K EE+ + + M E + +G ++ R Sbjct: 796 SERLNIPRKEAGEIIKA--YFEEFPAVKQYMDDMINKAREQEYVETILGR-----RRYLR 848 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 +SR + + G A K + L K ++ ++L LV+ Sbjct: 849 NINSRNAVERGNAERNAINAPIQGSAADMIKIAMIRLHEFLKKEHLKSKMILQVHDELVF 908 >gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264] gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264] gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264] Length = 926 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 87/553 (15%), Positives = 163/553 (29%), Gaps = 86/553 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---------LENT 64 D + ++ +F + H P MP L LE+ Sbjct: 354 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + + ++ VL I TL+ + AL+ + Sbjct: 412 SKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVRTI 469 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-- 182 + +++ + + EY D +T ++ L P ++E Sbjct: 470 KYEDVAGKGAQQ----------IGFDEVPLEQASEYAAEDADITLQLHHALYPQIAREPG 519 Query: 183 ---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + + + + G +D + + +L+Q+ L G + Sbjct: 520 LSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAYGLAGG-EFNL 578 Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ F L + +T + VL + P + +R Sbjct: 579 GSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 629 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P P R H Q + Sbjct: 630 ----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IA G K+V AD + IE R++A ++ ++ L+AF Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F V P +VT DQR I KV+ L Y + +AS G+ + Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAKL 784 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + + + E + G + + Sbjct: 785 YID--RYFLRYPGVARYMEETRARAKEKGYVETVFGRRL-----WLPEINGGNGPRRQAA 837 Query: 525 HQAFEQTIENGKA 537 +A G A Sbjct: 838 ERAAINAPMQGTA 850 >gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210] Length = 622 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 166/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 50 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAK 99 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 100 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 157 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 158 RHLGVKTIKYEDVAGKGAQQIG----------FDEVPLAQASEYAAEDADITLQLHHALY 207 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 208 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 267 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 268 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 325 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 326 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 355 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++A ++ ++ Sbjct: 356 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDE 415 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 416 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 472 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 473 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 525 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 526 NGPRRQAAERAAINAPMQGTA 546 >gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] Length = 917 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 119/693 (17%), Positives = 206/693 (29%), Gaps = 154/693 (22%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID + D + ++ +F + H P MP+ L Sbjct: 336 IDAAALTAFDTETTALDPML--ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLA 393 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 K LE+ D V + ++ VL N DI ++ TL+ + Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLA---NYDIALNGIEHDTLLESYVVESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K + +++ + K + + + +T ++ Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHA 500 Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P ++E L + + I G +D A H + + +L+ E Sbjct: 501 LYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGEAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + +T + VL + P + + Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P P R H Sbjct: 620 R-------------------------------GLSKLKSTYTDKLPRMVNPTTGRVHTNY 648 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IAS G ++V AD + IE R++A ++G Sbjct: 649 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISG 708 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF GED++ T A F V P +V DQR I KV+ L Y A +AS Sbjct: 709 DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 765 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + A + + + E + G + + Sbjct: 766 LGITRDAAKLYIDRYFAR--YPGVAQYMEDTRATAKEKGYVETVFGRRL-----WLPEIN 818 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + + L Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAV------DGWL---------------- 856 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 +RD LA M ++ VHDE+V Sbjct: 857 -------------------------------TRDQLASRM----------IMQVHDELVL 875 Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P+ + L +M +PL AE Sbjct: 876 EVPEGELSLVREKLPEMMCGVAK--LKVPLVAE 906 >gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4] Length = 926 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 88/553 (15%), Positives = 163/553 (29%), Gaps = 86/553 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA---------LENT 64 D + ++ +F + H P MP L LE+ Sbjct: 354 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + + ++ VL I TL+ + AL+ + Sbjct: 412 SKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVRTI 469 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + +++ + + EY D +T ++ L P ++E Sbjct: 470 KYEDVAGKGAQQ----------IGFDEVPLEQASEYAAEDADITLQLHHALYPQIAREPG 519 Query: 185 LW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + + G +D + + +L+Q+ L G + Sbjct: 520 LARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAYGLAGG-EFNL 578 Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ F L + +T + VL + P + +R Sbjct: 579 GSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 629 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P P R H Q + Sbjct: 630 ----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IA G K+V AD + IE R++A ++ ++ L+AF Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F V P +VT DQR I KV+ L Y + +AS G+ + Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAKL 784 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + + + E + G + + Sbjct: 785 YID--RYFLRYPGVARYMEETRARAKEKGYVETVFGRRL-----WLPEINGGNGPRRQAA 837 Query: 525 HQAFEQTIENGKA 537 +A G A Sbjct: 838 ERAAINAPMQGTA 850 >gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1] Length = 830 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 107/535 (20%), Positives = 182/535 (34%), Gaps = 139/535 (25%) Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHT 206 E ++ ++ L E+ L +L + + G +DVA Sbjct: 397 TEEAGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGVRLDVAYLKA 456 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261 L+ V+ E +L++E+ L G + ++L+ LF E GL TE T +R Sbjct: 457 LSLEVEAELRRLEEEVHRLA-GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 515 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + ++ P ++ Q+ S+ Sbjct: 516 VLEALREAHPIVDRIL-------------------------------QYRELSKLKGTYI 544 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376 P P+ +R H +Q T +SDP+ I + +R +A EG KL Sbjct: 545 DPLPALVHPKTNRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWKL 604 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 VV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V R K + Sbjct: 605 VVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTIN 664 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A + +E+A F +++P+ Sbjct: 665 FGVLYGMSAHRLSGELAI-------------------PYEEAVAFIERYFQSYPK----- 700 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +AW +K L + + +T + +RR VP Sbjct: 701 ----------VRAWIEK-----TLAEGRERGYVET-------LFGRRRYVP--------- 729 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-- 614 +L + S R R N VQ + D++ M Sbjct: 730 DLASRVKSIREAA------ERMAFNMP------------------VQGTAADLMKLAMVK 765 Query: 615 --MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + G ++L VHDE+V E P + E A M W +PL+ E Sbjct: 766 LFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLEVE 818 >gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737] Length = 830 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 90/453 (19%), Positives = 156/453 (34%), Gaps = 68/453 (15%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTV----TREIFKRLEPLSSKEQELWYL--------- 188 L D N R +G K D + +++ L P ++E+ L +L Sbjct: 377 LLDPGNTNPEGVARRYGGEWKEDAAARALLSERLWQALYPRVAEEERLLWLYREVERPLA 436 Query: 189 --DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + G +DV L+Q V E +L+ E+ L G + ++L+ LF E Sbjct: 437 QVLAHMEATGVRLDVPYLEALSQEVAFELERLEAEVHRLA-GHPFNLNSRDQLERVLFDE 495 Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 GL TE T +R VL ++ P ++ R Sbjct: 496 LGLPPIGKTEKTGKRSTSAAVLELLREAHPIVGRILEYRELM------------------ 537 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359 + P P+ R H +Q T +SDP+ I Sbjct: 538 -------------KLKSTYIDPLPRLVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPV 584 Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +R IA EG LV D + IE RVLA ++G++ ++ F G+D++ T A Sbjct: 585 RTPLGQRIRKAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWM 644 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V P V R K + + Y A +++ + A ++ ++ Sbjct: 645 FGVPPEGVDGAMRRAAKTVNFGVLYGMSA---HRLSQELSIPYEEAAAFIE-----RYFQ 696 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 W+ + E + ++ T R ++ ++RV + + G Sbjct: 697 SFPKVRAWIAKTLEE-GRKKGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 754 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 A K V L + + ++L LV Sbjct: 755 AADLMKLAMVKLFPRLRPLG-VRILLQVHDELV 786 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 11/127 (8%) Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604 K + + L GR Y + G R + R + RE VQ Sbjct: 695 FQSFPKVRAWIAKTLEEGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 753 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 + D++ M G I+L VHDE+V E P A+ L M + Sbjct: 754 TAADLMKLAMVKLFPRLRPLGVRILLQVHDELVLEAPKARAEEAAQLAKETMEGV--YPL 811 Query: 660 GLPLKAE 666 +PL+ E Sbjct: 812 SVPLEVE 818 >gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] Length = 944 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 100/616 (16%), Positives = 184/616 (29%), Gaps = 99/616 (16%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--FAFGFDDHPVELWDCVHD----PVMPQ 55 + +D ET S + L + + + Sbjct: 371 RHIAVDTETTS------------LDTFEAELAGISIAVETGKARFISFAQSALDRDKTVE 418 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE 114 +LK LEN + + N ++ VLK +++ +LA P Sbjct: 419 ILKPLLENPSLPKIGQNLKYDMLVLKKY-GIELSP--VAFDTMLASYVLNPEEKHNLDDL 475 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + EL+ G+T + +++ E +Y D + ++ Sbjct: 476 AAHHLGYRTTTFDELVG---TGKTKQHIFE----VDPEKL---SDYACQDADLALQLEGV 525 Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 E EL +L + + G C+D ++ V E L + + Sbjct: 526 FRKKLDGETELLWLCENIEFPLVTVLAEMEYAGICIDTHHLEKASERVKKELELLTETIY 585 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNR 280 + G + ++L LF L + T+T VL L P A + R Sbjct: 586 A-AAGSAFNIDSPKQLAHILFDLLALPPKKRTKTGYSTNVEVLEELATLFPIARDLLEYR 644 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + P P R H + Sbjct: 645 SL-------------------------------QKLKSTYIDALPKMVNPLTGRLHTTFN 673 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIA--SEGKKLVVADLAGIEARVLAWMA 393 Q IT +S+P+ I + +R I E L+ AD + IE R+ A ++ Sbjct: 674 QFITATGRLSSSNPNLQNIPIRSPLGKEIRRAFIPSTPENW-LLSADYSQIELRIAAEIS 732 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ L+AF ED++ T F+ ++T D R K + + Y ++ Sbjct: 733 GDPQLLEAFRNREDIHTATAKVIFDT--DEITSDMRRKAKEVNFGVLYGIMPF---GLSR 787 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + ++ T + +QE E ++ T R ++ Sbjct: 788 RLNIPQKEAKAIIDT-----YISKYPGLFKALQEIIVT-GREKGYVTTILGR-RRYLADL 840 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRD 572 +SR + L +A T G A K + N +++L L++ Sbjct: 841 NSRNTNLKKAAERAAMNTPIQGTAADIIKCAMNLCSSRMRHLNMKSVMLLQVHDELLFET 900 Query: 573 VGNNRSYLNTTTRQLT 588 + L+ Q Sbjct: 901 TDAEKEPLSKLVEQAM 916 >gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786] Length = 923 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 91/574 (15%), Positives = 172/574 (29%), Gaps = 88/574 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64 D + ++ +F + H P +P L K LE+ Sbjct: 351 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVLAKLKPWLEDA 408 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + + ++ VL N I ++ TL+ + AL+ K Sbjct: 409 SRKKLGQHLKYDAQVL---VNHGIALNGIEHDTLLESYVLESHRTHDMDSLALRHLGVKT 465 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE- 182 + +++ + + EY D +T ++ L P ++E Sbjct: 466 IKYEDVAGKGAQQ----------IGFDEVPLDKASEYAAEDADITLQLHHALYPQIAREP 515 Query: 183 ----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + + + + G +D + + +L+QE L G + Sbjct: 516 GLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYVLAGG-EFN 574 Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 +++ F L + +T + VL + P + +R Sbjct: 575 LGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR-------- 626 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 G S+ P P R H Q + Sbjct: 627 -----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGR 663 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++DP+ I +R IA+ G K+V AD + IE R++A ++ ++ L+AF Sbjct: 664 LASNDPNLQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFA 723 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ T A F V P +VT DQR I KV+ L Y + +AS G+ + Sbjct: 724 HGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAK 780 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + + E + G + + Sbjct: 781 LYID--RYFLRYPGVARYMEETRTRAKEKGYVETVFGRRL-----WLPEINGGNGPRRQA 833 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +A G A K + + + Sbjct: 834 AERAAINAPMQGTAADLIKLSMIAVDDWLERGGF 867 >gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147] Length = 923 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 91/574 (15%), Positives = 172/574 (29%), Gaps = 88/574 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64 D + ++ +F + H P +P L K LE+ Sbjct: 351 DTETTSLDPML--AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVLAKLKPWLEDA 408 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKM 123 + + ++ VL N I ++ TL+ + AL+ K Sbjct: 409 SRKKLGQHLKYDAQVL---VNHGIALNGIEHDTLLESYVLESHRTHDMDSLALRHLGVKT 465 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE- 182 + +++ + + EY D +T ++ L P ++E Sbjct: 466 IKYEDVAGKGAQQ----------IGFDEVPLDKASEYAAEDADITLQLHHALYPQIAREP 515 Query: 183 ----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + + + + G +D + + +L+QE L G + Sbjct: 516 GLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYVLAGG-EFN 574 Query: 233 SRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 +++ F L + +T + VL + P + +R Sbjct: 575 LGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR-------- 626 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 G S+ P P R H Q + Sbjct: 627 -----------------------GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGR 663 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++DP+ I +R IA+ G K+V AD + IE R++A ++ ++ L+AF Sbjct: 664 LASNDPNLQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFA 723 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ T A F V P +VT DQR I KV+ L Y + +AS G+ + Sbjct: 724 HGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLGITRDAAK 780 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + + E + G + + Sbjct: 781 LYID--RYFLRYPGVARYMEETRTRAKEKGYVETVFGRRL-----WLPEINGGNGPRRQA 833 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +A G A K + + + Sbjct: 834 AERAAINAPMQGTAADLIKLSMIAVDDWLERGGF 867 >gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184] gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184] Length = 920 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 117/699 (16%), Positives = 213/699 (30%), Gaps = 166/699 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID + D + ++ +F + H P MP+ L Sbjct: 339 IDAAALTAFDTETTALDPML--ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLA 396 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 K LE+ D V + ++ VL N DI ++ TL+ + Sbjct: 397 RLKPWLESADRKKVGQHLKYDAQVLA---NYDIALNGIEHDTLLESYVVESHRTHDMDSL 453 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K + +++ + K + + + +T ++ Sbjct: 454 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHA 503 Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P ++E L + + I G +D A H + + +L+ E Sbjct: 504 LYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGEAY 563 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + +T + VL + P + + Sbjct: 564 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 622 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P P R H Sbjct: 623 R-------------------------------GLSKLKSTYTDKLPRMVNPTTGRVHTNY 651 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IAS G ++V AD + IE R++A ++G Sbjct: 652 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISG 711 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF GED++ T A F V P +V DQR I KV+ L Y A +AS Sbjct: 712 DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 768 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + + ++ Sbjct: 769 LGITRDAAKLYID-----------------------------------------RYFARY 787 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V++ + ++ + + R+ L LP Sbjct: 788 PGVAQYMEDTRATAKEK-GYVETVFGRR-----------------LWLP----------- 818 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 + N RQ +Q + D++ M+ + +++ V Sbjct: 819 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQV 872 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P+ + L +M +PL AE Sbjct: 873 HDELVLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAE 909 >gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1] Length = 962 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 114/694 (16%), Positives = 220/694 (31%), Gaps = 153/694 (22%) Query: 5 FIDF---ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57 FID ET D G+ + ++ +F C D + Sbjct: 379 FIDSVMGETEISFDTETTGLDP--NEAELVGLSFCITKGEAYYVPCPADRNECIQLLNNF 436 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-AL 116 + N +T V N ++ +LK + ++ I +LA P ++ + Sbjct: 437 QPLFNNASITWVGQNIKYDLLMLK-WYGFEL--QGNIFDTMLAHYVIEPDGKSSMDLLSA 493 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K + ELI + KG+ + EY D +T ++ Sbjct: 494 KFLGYQPVSITELIGKKGKGQGN---------MRDIEIEKIKEYAAEDADITLQLKNVFL 544 Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 PL KEQ L + + G +D + ++ + + +Q + Sbjct: 545 PLIKKEQVEKVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVYEQA 604 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G+ + ++L LF + KL P+A + + Sbjct: 605 -GVKFNLASPKQLGEVLFDKM--------------------KLDPKAKKTKTGQYATGED 643 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + KL + N L F ++ P + R H Q + Sbjct: 644 VLAKLANQHKICND------ILSFRELTKLKNTYVDALPQLINSKTGRVHTSYAQAVAVT 697 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R I E LV AD + IE R++A ++ + + Sbjct: 698 GRLSSTNPNLQNIPVRTERGREIRKAFIPRDENHVLVSADYSQIELRIVAAISADVNMCE 757 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+TG+D++ T A+ FNV ++VTK+ R K + + Y GA +A G++ Sbjct: 758 AFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSVNFGIIYGQGAF---GLADNLGISR- 813 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 T + + ++++ + + Sbjct: 814 ----------------------------------------TEAKAIIDNYKKQFPNIQQY 833 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSY 579 + ++T + ++ RKR L S + G R+ Sbjct: 834 MDNTINFAKET-GYVETLMGRKR-----------------WLKDINSANFTVRGFAERNA 875 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633 +N+ +Q + D++ M+ A ++L VHDE+V Sbjct: 876 INSP------------------IQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQVHDELV 917 Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + + E ++ M + +P AE Sbjct: 918 FDVLKEELEKVKPVILDCMQHALALPNDVPTNAE 951 >gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8] gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8] Length = 942 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 113/699 (16%), Positives = 207/699 (29%), Gaps = 176/699 (25%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-----QV 56 D ET S LT ++ +F HD +P Sbjct: 370 DTETTSLDPLT----------AQIVGMSFSVAAGTGAYLPLTHDYFDAPSQLPLAEVLAK 419 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115 K LEN + V N +++ VL N I ++ TL+ + + Sbjct: 420 FKPLLENPTIKKVGQNLKYDKHVLA---NHGIALNGIAHDTLLQSYVLESHRGHGMDELS 476 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +++ + K + + EY D +T ++ + L Sbjct: 477 ARHLGIEPISFEQVAGKGAKQVGFNQVTI----------EVAAEYAAEDADITLQLHEAL 526 Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P S E TI G +D + + + + ++ +L+ + Sbjct: 527 SPQVLQDDKLNFIYSQVEMPSMECLFTIERNGVLIDANMLNRQSNEIGMKLMELEAKAFE 586 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF + G+ +T + VL P + Sbjct: 587 LA-GQPFNLGSPKQLQEILFGKLGIKPIKKTPSGAPSTDEDVLQELALDYPLPKVLLE-- 643 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + G ++ P R H + Sbjct: 644 -----------------------------YRGLAKLKSTYTDKLPKMINAHTGRVHTNYN 674 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I +R IA G +V AD + IE R++A ++ + Sbjct: 675 QAVAITGRLASSDPNLQNIPVRTAEGRRIREAFIAPPGSHIVSADYSQIELRIMAHLSKD 734 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF ED++ T A F V + V +QR KV+ L Y A +A Sbjct: 735 AGMLQAFANNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIYGMSAF---GLAQNL 791 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + + ++ ++ Sbjct: 792 NIERSAAQNYIERYF-----------------------------------------ARYP 810 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVG 574 V + + + ++ + Y + L +P S R G Sbjct: 811 GVRQYMQDTRELAKE-------------KGYVETYFGRR-----LWVPEINSANGMRRAG 852 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 R+ +N Q + D++ M+ K +++ V Sbjct: 853 AERAAINAPM------------------QGTAADLIKLAMIAVDKWLKDEQLNTKLIMQV 894 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E D++ E L LM S +PL AE Sbjct: 895 HDELVLEVADSELELVKQKLPELMQSVAK--LDVPLLAE 931 >gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] Length = 834 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 100/544 (18%), Positives = 167/544 (30%), Gaps = 129/544 (23%) Query: 148 PNHREAWRLFGEYCKGD--------VTVTREIFKRLEPLSSKEQELWYL----------- 188 P + + Y GD E+++ L + E+ LW+L Sbjct: 384 PTNSDPAATVRRYGAGDWSEDPAARALAAAELWRILGERLAGEEALWWLYREVERPLAGV 443 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G VDVA L+ + E ++ E+ L G + ++L+ L+ E G Sbjct: 444 LAEMEHAGVRVDVAYLEALSAELGREIAAIEAEVHRLA-GRAFNLNSRDQLEVILYDELG 502 Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 L T+ T +R S+ R+ A Sbjct: 503 LTPTRRTQKTGRRSTSAAALEALVGAHPIVERILA------------------------- 537 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363 + S+ P P R H Q T +SDP+ I Sbjct: 538 -YRELSKLKGTYLDPLPRLVHPATGRIHTRYHQTGTATGRLSSSDPNLQNIPVRTEVGRR 596 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R +A G LV AD + IE RVLA ++G++ + F+ D++ T + F V P Sbjct: 597 IRRAFVAEPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEA 656 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V +R K + + Y +++ G+ ++ + ++ + Sbjct: 657 VDPFRRRAAKTVNFGVLYGMSP---HRLSRELGIEYAEAERFIQ------RYFESYPRVQ 707 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E E A E ++ T R ++ SR + + G A K Sbjct: 708 AYIERTLEQAREKGYVETLFGR-RRYIPDIRSRNRNVREAAERMAFNMPVQGTAADLMKL 766 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 V KL I Sbjct: 767 AMV-------------------------------------------------KLAPEIRS 777 Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLP 662 +R IL VHDE+V E P + E A ++ +M +WA +P Sbjct: 778 LGARLIL----------------QVHDELVLEAPQERAEAVARVVREVMEG--AWALDVP 819 Query: 663 LKAE 666 L+ E Sbjct: 820 LEVE 823 >gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12] gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 923 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 102/601 (16%), Positives = 186/601 (30%), Gaps = 99/601 (16%) Query: 6 IDFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 +D ET S + G+ +E + F + PV+L +L+ L Sbjct: 347 LDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPLL 402 Query: 62 ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 E+ V V + ++ VL+ + D + ++ T AR + A + +G Sbjct: 403 EDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYE 462 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +G + I P + +Y D +T + L Sbjct: 463 TMKYVDLVGKGAKQI-----------------PFSHVGVQEATQYAAEDADITLRLHCVL 505 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P E L + + I G +D + + + Q+ Sbjct: 506 APKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMD 565 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF E L + +T + L + Sbjct: 566 LA-GRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP------- 617 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R L++ ++ P P R H Sbjct: 618 ------------------------RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYH 653 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +SDP+ I +R +A G+KL+ D + IE R++A ++G+ Sbjct: 654 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ A F +VT ++R K + L Y A +A Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAF---GLARQL 770 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + D + R EN + A + ++ T R + S Sbjct: 771 GISRGEAQDYIA------LYFDRFSGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIAS 823 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A KR V + L + R+L+ V + Sbjct: 824 GNQTQRAGAERAAINAPMQGTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHD 877 Query: 576 N 576 Sbjct: 878 E 878 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 18/172 (10%) Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN- 556 G + V R+ ++ AF + G I + +D +Y + Sbjct: 734 VFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLG--ISRGEAQDYIALYFDRFSGV 791 Query: 557 --NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILA 611 + R Y + V R YLN+ Q R +Q + DI+ Sbjct: 792 RDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA-AINAPMQGTAADIIK 850 Query: 612 EGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN 654 M+ + ++L VHDE+V E + + M + Sbjct: 851 RAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902 >gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598] Length = 897 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L + E L + + G +D + ++ +L+ + Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P L R H Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA +G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LK F D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu] Length = 917 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 113/698 (16%), Positives = 208/698 (29%), Gaps = 164/698 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID + D + ++ +F + H P +P+ L Sbjct: 336 IDAAALTAFDTETTSLDP--MTARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDEVLA 393 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 K LE+ D V + ++ VL I TL+ + A Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLANYGIELSGIE--HDTLLESYVLESHRTHDMDSLA 451 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ K + +++ + K + + + +T ++ L Sbjct: 452 LRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHAL 501 Query: 176 EPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P ++E L + + I G +D A + + +L+ + Sbjct: 502 YPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEIATRLVELEAQAYE 561 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + +++ F + L + +T + VL + P + +R Sbjct: 562 LAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR 620 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P P R H Sbjct: 621 -------------------------------GLSKLKSTYTDKLPRMVNPETGRVHTNYA 649 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + ++DP+ I +R IAS G ++V AD + IE R++A ++G+ Sbjct: 650 QAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHQIVSADYSQIELRIMAHISGD 709 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF GED++ T A F V P +VT DQR I KV+ L Y A +AS Sbjct: 710 ASLLRAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVINFGLIYGMSAF---GLASNL 766 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + + ++ Sbjct: 767 GITRDAAKLYID-----------------------------------------RYFARYP 785 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V++ + ++ + + R+ L LP Sbjct: 786 GVAQYMEDTRAIAKEK-GYVETVFGRR-----------------LWLP------------ 815 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629 + N RQ +Q + D++ M+ +++ VH Sbjct: 816 EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDGLASRMIMQVH 870 Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 DE+V E P+ + L +M +PL AE Sbjct: 871 DELVLEVPEAELPRVREKLPEMMCGVAK--LKVPLVAE 906 >gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] Length = 897 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L + E L + + G +D + ++ +L+ + Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P L R H Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA +G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LK F D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M] gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M] Length = 920 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 116/683 (16%), Positives = 202/683 (29%), Gaps = 152/683 (22%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64 D + ++ +F + H P MP+ L K LE+ Sbjct: 348 DTETTALDPMV--ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVLARLKPWLESP 405 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 D V + ++ VL I TL+ + AL+ K Sbjct: 406 DRKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 463 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + +++ + K + + + +T ++ L P ++E Sbjct: 464 KYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHCALYPQIAREPG 513 Query: 185 LWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + I G +D A + + + L+ + +L G + Sbjct: 514 LERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIAMRLVDLEAQAYALAGG-EFNL 572 Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ F + L + +T + VL + P + +R Sbjct: 573 GSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 623 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P P R H Q + Sbjct: 624 ----------------------GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 661 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IA+ G ++V AD + IE R++A ++G+ L+AF Sbjct: 662 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 721 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F V P +V DQR I KV+ L Y A +AS G+ + Sbjct: 722 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAF---GLASNLGITRDAAKL 778 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + A E+ A E ++ T R + + + Sbjct: 779 YIDRYFARYP------GVAQYMEDTRASAKERGYVETVFGR-RLWLPEINGGNGPRRQAA 831 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A G A K + + L Sbjct: 832 ERAAINAPMQGTAADLIKLSMIAV------DGWL-------------------------- 859 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643 +RD LA M ++ VHDE+V E PD + Sbjct: 860 ---------------------TRDKLASRM----------IMQVHDELVLEVPDDELSLV 888 Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666 L +M +PL AE Sbjct: 889 REKLPEMMCGVAK--LKVPLVAE 909 >gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1] gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1] Length = 898 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 113/685 (16%), Positives = 209/685 (30%), Gaps = 149/685 (21%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVL 57 L D T D G+ + ++ F+F + H + V P+ Sbjct: 324 LSKD--TLVAFDTETTGLDTRTD--KMVGFSFCTSNEKAYYVPVGHSYLGVEEQVDPEDA 379 Query: 58 KEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 AL+ IV N F+ ++L + ++ + + T+++A S + A Sbjct: 380 VAALKKLMKQKIVGQNLKFDLSLLYNQYGME-EVLPFADTMIMAWLTDPGSRVGLDSLAQ 438 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K M+ KE++ + + +H + D +AW F Y + E+ Sbjct: 439 KFFKYDMKPFKEMVKKG-ENFSHVNIADATFYAAEDAWMTFLLYGA--IKKKMELSSLTH 495 Query: 177 PLSSK---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L E + + G VD TL + + + +L E+ L+ G + Sbjct: 496 LLKEAKDVEYPFINVLIRMERLGIKVDQVKLETLKKTLSEDLHRLTSEIHELS-GSEFNI 554 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 R ++L LF GL T+T VL S K P ++ R + Sbjct: 555 RSTQQLGVVLFQHLGLKGGKKTKTGYSTNEAVLQSLKHEHPVIGKILEYR-EYHKMLSTY 613 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ D + SR + Q T Sbjct: 614 VEPLLKLAKKDEK-----------------------------SRIYTSFIQTGTATGRLS 644 Query: 351 TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 + DP+ I + VR +A EG KLV D + IE R+LA + + ++AF G Sbjct: 645 SKDPNLQNIPVRSTLGRSVREAFVAKEGYKLVSIDYSQIELRLLAHFSKDAALMEAFNKG 704 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D+++ T + F + K +R K + L Sbjct: 705 TDIHMATAVKLFG---EEEAKAKRNFAKSVNFGLL------------------------- 736 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + E + + + V + Sbjct: 737 -------------------YGMGPKKLSDELGITSAEAKEIIANYFASFPTVKNFLEGIQ 777 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + I+ + ++RR Y N Sbjct: 778 ERVK--IDGYVETLLKRRRIF-------------------------------DYENANGM 804 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 Q + Y + + Q + D++ M + ++L +HDE++ E + Sbjct: 805 Q---KAAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQIHDELIFEIRED 861 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPL 663 E + H+M W +PL Sbjct: 862 QVEKISKRFVHVMEHI--WELEVPL 884 >gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] Length = 907 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 112/690 (16%), Positives = 206/690 (29%), Gaps = 165/690 (23%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D + Y E ++ +F + H P P L K LE+ Sbjct: 334 DTETTSLN-YME-AEIVGLSFAVERGEAAYVPLAHSYPGTPAQLDRDAVLAALKPLLEDP 391 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 D + N ++ +VL DI + +L + + ALK + Sbjct: 392 DKAKLGQNLKYDASVLARY---DIAMQGIAFDTMLESYVLDSTGTRHDMDSLALKYLGRS 448 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 +++ + K T + + Y D VT + + L P Sbjct: 449 TTHFEDVAGKGAKQITFDKV----------GIEEAAAYAAEDAEVTLALHETLWPKLQET 498 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L+ E L + + G +D ++ + L++E ++ G V Sbjct: 499 PSLASVLTDIELPLVPVLSRMERCGALLDEERLWEHSRELGQRLQALEEEAHNVA-GQVF 557 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + L + T T + VL P + +R Sbjct: 558 NLGSPKQLGQILFEKLELPVLKKTPKGAPSTAEEVLQELALDYPLPKLLIEHR------- 610 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 G S+ P R H Q +T Sbjct: 611 ------------------------GLSKLKSTYTDKLPGMINSHTGRIHTSYHQAVTATG 646 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R IA+EG ++V AD + IE R++A ++ + L AF Sbjct: 647 RLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQIVAADYSQIELRIMAHLSEDPGLLAAF 706 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 D++ T A F V V+ +QR K + G++ Sbjct: 707 RENLDVHSATAAEVFGVPLDSVSGEQRRKAKAIN--------------FGLIYGMSAFGL 752 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A + + +A+ + E +P + + T Sbjct: 753 ARQLHLDRG-----EAQRYIDVYFERYP--GVRQYMVRTRA------------------- 786 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +A ++ V ++ GR L ++ Sbjct: 787 ----------------LAHEQGYVETLF--------------GRRLYLPEI--------- 807 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636 R R+ +Q + DI+ M+ +++ VHDE+V E Sbjct: 808 NVRNKMRQQAAERTAINAPMQGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDELVLEV 867 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 ++ + L LM++ A L ++A Sbjct: 868 AESQLDPVCDELCRLMSAAADLAVPLLVEA 897 >gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912] gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912] Length = 890 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 89/515 (17%), Positives = 160/515 (31%), Gaps = 131/515 (25%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 EI + E L ++ + G VD +L + E +L++E+ L G Sbjct: 479 LEIRGLWPLYHNLELPLSFVLAKMERTGVRVDATRLRSLGETFSTEIARLEEEIYKLA-G 537 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T VL ++ + R Sbjct: 538 TTFNLNSPKQLAEILFDKLGLPPQKKTKTGYSTGADVLEKLAPYHEIVQRILDWRQLIKL 597 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + P + H Q +T Sbjct: 598 QSTY-IEGLLKVIR------------------------------PETGKIHTCFQQAVTA 626 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R I SE G K+V AD + IE RVLA + + + Sbjct: 627 TGRLSSTDPNLQNIPVRVEEGRRLRQAFIPSESGWKIVSADYSQIELRVLAHFSKDPALV 686 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF D++ T A F V QVT R K + + Y + G+ Sbjct: 687 QAFRDDLDIHARTAAEVFEVPQEQVTPGMRRQAKAVNFGIVYGISDYGLSQ---NLGIPR 743 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A + + ++ Sbjct: 744 KEAAEFIA--------------------------------------------RYFAKFPR 759 Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + + +NG + +RR +P ++ + RS R+ Sbjct: 760 VKSYMEETVAAARKNGFVTTLLGRRRYLPDIHSSNY---------NLRSFA------ERT 804 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 +NT +Q + DI+ M+ + ++L VHDE+ Sbjct: 805 AMNTP------------------IQGSAADIIKRAMVEVDRRLTEGDFRAKMLLQVHDEL 846 Query: 633 VCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 V E P + + M S S +PLK + Sbjct: 847 VFEVPPEEVGALQDMVKQAMESAVS--LDVPLKVD 879 >gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] Length = 903 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 106/627 (16%), Positives = 204/627 (32%), Gaps = 138/627 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L L + ++ AHN+ + ++ + + ++A L Sbjct: 387 LAALLGDKKMSKTAHNAKY---LMNLLLSAGQEVKGLDFDTMIAAHLLGEKNLAIKDLVF 443 Query: 117 KLSSQKMEEGKELIARFCKGETHE--CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + ++ + + ++ R K L + + +RL G + + Sbjct: 444 EHFGIEIADIENILTRNGKKTIFNEVQLSEAAQLAADYTFRLKGIFAAQ--LAETRLMDL 501 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E L + + G +D L + + + KL++++ + G + Sbjct: 502 FARV---EMPLLPILLGMERIGIMLDTDLLKAMAEKTGRQIFKLEEDIYAQA-GHSFNIG 557 Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF E L + T+T VL + + RM Sbjct: 558 SPQQLGRILFDELKLPVIKKTKTGYSTGAEVLEELQGKHRIVDLILEYRML--------- 608 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + P P R H +Q T + Sbjct: 609 ----------------------VKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSS 646 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 S+P+ I +R IA G L+ D + I+ RVLA ++ + ++AF++ + Sbjct: 647 SEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQ 706 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T AR NV+P++VTK+QR + K + + Y + ++ T L+L Sbjct: 707 DIHTATAARLLNVSPSKVTKEQRRLAKTVNFGVIYGMSSYGLEQ---ATELSLEEA---- 759 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++ KA+ +K+ RV+ + E+ Q Sbjct: 760 -------------------------------------DKFIKAYFEKYPRVAVYFAEIKQ 782 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + + +RR +P + N+ R Sbjct: 783 QART--QGYVETLLGRRRYIPEI-------------------------------NSPNR- 808 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640 + RE VQ S DI+ M+ K ++L VHDE++ E P + Sbjct: 809 ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKIKEEKLKSRLLLQVHDELIFEVPTAE 867 Query: 641 EFN-ASMLYHLMTSNPSWAKGLPLKAE 666 + +L M+ A +PLK E Sbjct: 868 LGRMSDLLIETMSGAV--AFEIPLKVE 892 >gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200] Length = 897 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 85/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L + E L + + G +D + ++ +L+ + Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + S+ P L R H Sbjct: 599 -------------------------------YRHLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA +G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LK F D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] Length = 879 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 117/661 (17%), Positives = 223/661 (33%), Gaps = 135/661 (20%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 +Y + D P + D D KE E+ ++ + + + +L Sbjct: 327 DRYI-HSEIYKLGIKTTDTPTYIIDP--DSDFVSKFKEIFEDEEIVKNSFDIKEDVVLLD 383 Query: 82 AC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 NL +P + L + S+ + +++ +L+ + K ++ Sbjct: 384 KLGINLKLPYDDMMLMHYL--IDPSRSSYDLKVLSQSYLDYEVKSPVDLLGKGKKALKYQ 441 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 L N+ + E K + + + L+ E +L + + G+ D Sbjct: 442 DLDFDELGNYLASGINAIEDSKEILEDKLDEYHMLDLYKEIEIKLSKVLADMEIVGFVTD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257 + L + +D + K+ +E+ L G + ++L LF + L + T+T Sbjct: 502 KKVLEDLKENIDKDIDKITEEIYELA-GSEFNINSTKQLGEVLFKDLDLPVIKKTKTGFS 560 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T +VL + ++ R + + L +A++ DGR+R T + Sbjct: 561 TNAQVLEKLRDKHQIIPKIERYR-ELFKLRSTYIEGLEKAIDEDGRIRSTFR-------- 611 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372 QN+ + DP+ + +R A E Sbjct: 612 ---------QNI--------------AATGRLSSQDPNLQNLPIKTDEGRLIRKAFRAEE 648 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 GK L+ AD + IE R+LA ++G++ + AF+ G D++ T ++ F+ +VTK QR+ Sbjct: 649 GKILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQRSEA 708 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + + + A + ++ E Sbjct: 709 KAVNFGIIYGISDYGLSQ---NLNIPRKEAKEYIDNYMASYP------SIKEYMDSIVEK 759 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 A ED ++ T ++RR VP + Sbjct: 760 AKEDGYVETLF-------------------------------------KRRRYVPEI--- 779 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + R+ R G R LNT +Q + DI+ Sbjct: 780 -----------NSRNFNVRSFGQ-RVALNTP------------------IQGTAADIIKI 809 Query: 613 GMM----NATKAG--YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665 M+ N KAG IVL +HDEI+ E ++ + A +L M + +PL Sbjct: 810 AMIETDKNLKKAGLDAKIVLQIHDEIILEADESSKDEAIKILRESMENATD--LEVPLIV 867 Query: 666 E 666 + Sbjct: 868 D 868 >gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] Length = 830 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 106/535 (19%), Positives = 182/535 (34%), Gaps = 139/535 (25%) Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHT 206 E ++ ++ L E+ L +L + + G +DVA Sbjct: 397 TEEAGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGVRLDVAYLKA 456 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261 L+ V+ E +L++E+ L G + ++L+ LF E GL TE T +R Sbjct: 457 LSLEVEAELRRLEEEVHRLA-GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 515 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + ++ P ++ Q+ S+ Sbjct: 516 VLEALREAHPIVDRIL-------------------------------QYRELSKLKGTYI 544 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376 P P+ +R H +Q T +SDP+ I + +R +A EG +L Sbjct: 545 DPLPALVHPKTNRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWRL 604 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 VV D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V R K + Sbjct: 605 VVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTIN 664 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A + +E+A F +++P+ Sbjct: 665 FGVLYGMSAHRLSGELAI-------------------PYEEAVAFIERYFQSYPK----- 700 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +AW +K L + + +T + +RR VP Sbjct: 701 ----------VRAWIEK-----TLAEGRERGYVET-------LFGRRRYVP--------- 729 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-- 614 +L + S R R N VQ + D++ M Sbjct: 730 DLASRVKSIREAA------ERMAFNMP------------------VQGTAADLMKLAMVK 765 Query: 615 --MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + G ++L VHDE+V E P + E A M W +PL+ E Sbjct: 766 LFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLEVE 818 >gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] Length = 914 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 92/562 (16%), Positives = 178/562 (31%), Gaps = 72/562 (12%) Query: 52 VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109 + + L L + + HN ++ VL D+P+ + ++A P + Sbjct: 386 EVRRALAPLLADDRRLKLGHNLKYDLQVLHRH---DLPLAPPLADTMIASYLIDPSRRSH 442 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + +L +++ E+ R + E + Y DV TR Sbjct: 443 GLDVLSEELLQRRLTSFAEVTDRDRRPEAFAHVAP----------AAAAAYSCEDVAATR 492 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ +P ++ E L + + G +D + L E +L Sbjct: 493 LLWQLFQPKLAELELAELFYQVEITLLPILARMERVGILLDGQVLKELAAEFSQELERLS 552 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVF 277 ++ L G+ + +L LF L T+ T + ++L Sbjct: 553 SKIYQLA-GVEFNINSPRQLGEVLFERLKLPHGRKTKGKTGYSTDIRELERLAAYHDLPA 611 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + S+ P R H Sbjct: 612 ----------------------------AIIAQRNLSKLKSTYVDKLSTLINPADGRIHT 643 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +Q +T +S+P+ I +R IA+ G + + AD + I+ RVLA Sbjct: 644 SFNQTVTATGRLSSSNPNLQNIPVRTQEGRRIRGAFIAAPGHRFLAADYSQIDLRVLAHY 703 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + L+AF+ +D++ T A F V PA VT D R + K + + Y A +A Sbjct: 704 SADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVAKTINFGIIYGMSAF---GLA 760 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + + + + + E E A D F+ T +R ++ + Sbjct: 761 EQLRCSRKEAQVFID------RYFELYRGVKTFMEEIVEQARRDGFVRTLLKR-RRQLPE 813 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYR 571 +S + T G A K + + KN N +L L++ Sbjct: 814 INSSNKLRREFAERTAINTPIQGTAADIIKLAAIACDRELRRKNFNTEALLQIHDELIFE 873 Query: 572 DVGNNRSYLNTTTRQLTREYTY 593 + ++ + +Q Sbjct: 874 VPEDEQAAVGKLVQQAMENVME 895 >gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] Length = 936 Score = 256 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 93/590 (15%), Positives = 192/590 (32%), Gaps = 88/590 (14%) Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTD 65 T D + Y ++ +F + + + + + LE+T Sbjct: 363 TFC-FDTETTSLDPY--QAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEFRPLLESTT 419 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 V N ++ +L+ P I ++A P M Sbjct: 420 QCKVGQNLKYDNLILRTYGIEVAPP---IFDTMVAHYLVAPD-----------KPHNMNA 465 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAW---RLFGEYCKGDVTVTREIFKRLEPLSSKE 182 E + + R L EY D +T ++ + LE +E Sbjct: 466 IAESYLNYAPIPIEALIGSRKSTQKSMRMVDVELVKEYACEDADITLQLKRLLELNIKQE 525 Query: 183 Q----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L + + +G +D + ++ + E L++E+ L G + Sbjct: 526 NLSKLFYEIEIPLVQVLTAMEYQGVQIDTQVLREISVTLGTELAALEKEIHRLA-GHAFN 584 Query: 233 SRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L LF + + + T + VL+ K P A + + R + Sbjct: 585 ISSPKQLGEILFDKLKIAGNNKKTKSGQYATGELVLADLTKDHPIAANILDYR-ELQKLK 643 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++ L++ ++ P + H +Q + Sbjct: 644 STYVDALIDLIS------------------------------PFDGKVHTSYNQTVVTTG 673 Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R + S L+ AD + IE R++A + ++ ++A Sbjct: 674 RLSSTNPNLQNIPIRTEKGRAIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEA 733 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ G+D++ T ++ F V QV + R K + Y +A G++ + Sbjct: 734 FKAGKDIHTATASKLFKVPLEQVDESMRRQAKTANFGIIYGISGF---GLAQRLGISRSE 790 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 ++ + + + + A E ++ T R K+ R +SR S L Sbjct: 791 AIATIQA------YFQEFHAIKAYMDRVIGQAREQGYVTTLMGR-KRYLRDINSRNSTLR 843 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570 + T G A K V + +++K+K L+L LV+ Sbjct: 844 GFDERNAINTPIQGTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHDELVF 893 >gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181] gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181] Length = 904 Score = 256 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 99/628 (15%), Positives = 187/628 (29%), Gaps = 155/628 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + LK LE++ + + N ++ + N I I+ +L + Sbjct: 379 EDLKPILEDSSIKKLGQNLKYDAHI---FLNYGIEINGISDDTMLMSYV--------IES 427 Query: 115 ALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 K+ + + CK E+ + + Y D VT +++ Sbjct: 428 NQNHGMDKLSA--KYLGHNCKSYESLVGKGVNQLTFDQVSVEDAVPYAAEDADVTLQLYL 485 Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 ++ L + I G +D + ++++ + L+++ Sbjct: 486 AMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILGDQSKVIGEKLLLLEEKA 545 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L G + ++L+ LF + + T +T + VLS P + Sbjct: 546 FDLA-GQPFNLSSPKQLQEILFEKLEIKPLKKTPSGTPSTSEEVLSELALNYPLPKLILE 604 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + P R H Sbjct: 605 YRSLA-------------------------------KLKSTYTDKLPKMINESSGRVHTS 633 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q I +SDP+ I VR IA +G K++ AD + IE R++A ++ Sbjct: 634 YNQAIAITGRLASSDPNLQNIPIRTVEGRKVREAFIAPDGSKILSADYSQIELRIMAHLS 693 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ + AF+ ED++ T FN+ + V+ +QR KV+ L Y G K Sbjct: 694 KDKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKVINFGLIYGMGVYGLAK--- 750 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 LN+ A A+N+ +P Sbjct: 751 --NLNIERAA--------------AQNYIERYFSKYP----------------------- 771 Query: 514 HSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + +NG +R VP + Sbjct: 772 -----SVREYMEDTKQDARKNGYVETHFGRRLWVPEI--NGSNGMQR------------- 811 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625 G R+ +N Q + D++ M+ ++ Sbjct: 812 AGAERAAINGPM------------------QGTAADLIKMAMVGVKTWLDGQRHLKGKMI 853 Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMT 652 + VHDE+V E PDT+ + +M Sbjct: 854 MQVHDELVFEVPDTEVTEFKENIKRIME 881 >gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] Length = 865 Score = 256 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 88/527 (16%), Positives = 163/527 (30%), Gaps = 139/527 (26%) Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCV 199 HR G + +T E++++L P E L + + G + Sbjct: 424 HRRLDLKLGGAAEQHADITLELYEQLAPAIDGRGLRKLYDEIELPLTRVLARMERTGIRI 483 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DL 254 D A L+ +++ + + L E+ +L G + ++L LF + L Sbjct: 484 DGAELKRLSVLMESQISGLTAEIHALA-GKPFNISSPQQLGKVLFEDLNLPAPVKYGKGK 542 Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 T +T VL +V R + Sbjct: 543 TISTAADVLDELAAEHEIVRKVLEYRQL-------------------------------T 571 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVI 369 + P P R H +Q +S+P+ I + +R+ + Sbjct: 572 KLKGTYVDALPALIDPATGRLHTSFNQTGAATGRLSSSNPNLQNIPIRTSLGREIRAAFV 631 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 +G KL+VAD + IE R+LA M+G++ ++AF GED++ T A V P VT + R Sbjct: 632 PRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLMVTPEAR 691 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y A +A+ G+ +K Sbjct: 692 RDAKAVNFGIVYGISAF---GLAAQLGIGRAEAERYIK---------------------- 726 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPL 548 +R + + + + + G + + R +P Sbjct: 727 ----------------------NYFARYVGVKRFIEETIAEVRKTGVTKTLFGRERPIPE 764 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + P+ R R+ +N+ Q + D Sbjct: 765 INGRN---------PNARGFA------ERTAVNSPL------------------QGTAAD 791 Query: 609 ILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYH 649 ++ M+ A ++L VHDE+V E P + S + Sbjct: 792 LIKLAMVRIDAALAAGGFQAAMLLQVHDELVFECPPEELDEVSRMVK 838 >gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 896 Score = 256 bits (654), Expect = 8e-66, Method: Composition-based stats. Identities = 91/539 (16%), Positives = 177/539 (32%), Gaps = 71/539 (13%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 ++ LK ++ + VAHN F+ +L + I +++ T+++A Sbjct: 368 EIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKY-GVKI-VNQVNDTMIMAYVLKSSGKHD 425 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR 169 LS + + G E IA T RN+ + +Y D +T Sbjct: 426 MDS----LSKEHL--GIEPIAY-----TTLAGTGRNQLTLDQIDIEKVAKYAAEDADITF 474 Query: 170 EIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKL 218 ++ + ++ L+ L + G +D A + ++ +L Sbjct: 475 RLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMEKVGVKIDAAKLIEQSANLEDSIKEL 534 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 + + L G + +L+ LF + GL T + ++ Sbjct: 535 EIKCYDLA-GQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIAA 593 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 M+ + S+ P L R H Sbjct: 594 LIMK---------------------------YRHLSKLKNTYTDKLPKM-LDVNGRVHTS 625 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA + +V AD + IE R++A ++ Sbjct: 626 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIRQAFIAEQEFCVVAADYSQIELRIMAHLS 685 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LKAF G D++ T A ++ VT +QR K + L Y A +A Sbjct: 686 KDKNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAF---GLAK 742 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + Sbjct: 743 QLEIPRGEAQEYIDVYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPDI 795 Query: 514 HSRVSELWNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 S+ N +A G A II + DV + +++ +++ +++ LV+ Sbjct: 796 SSKNVIQRNAAERAAINAPMQGTAADIIKKAMIDVNTMILQEYNDDIKMVMQVHDELVF 854 >gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1] gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1] Length = 883 Score = 256 bits (654), Expect = 8e-66, Method: Composition-based stats. Identities = 98/621 (15%), Positives = 181/621 (29%), Gaps = 154/621 (24%) Query: 64 TDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 V H++ +L D + ++ + + AL+ +G L Sbjct: 386 ESVKKYFHDAKQALWMLHHHSIELKALAADTMVSAYLLNPTASNYDINDVALEHLGMVL- 444 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 E + R + R A +LF + + RL Sbjct: 445 -----------------PAEGETAMASRAEAIRRLAQKLFEKLAERQ-------EDRL-- 478 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + G VD ++ + L ++ L G + + Sbjct: 479 LTQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELA-GENFNINSPK 537 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF + L + T+T +KL + V Sbjct: 538 QLGPILFEKLKLPVLKKTKTGYSTDAEVLEKLAEEHEIVAL------------------- 578 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 L++ ++ P+ R H Q +T +++P+ Sbjct: 579 ---------ILEYRQMAKLKSTYTDGLAALVDPQTGRLHSTFHQTVTATGRLSSAEPNLQ 629 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R I G ++ AD + IE RVLA M+ ++ L AF G+D++ Sbjct: 630 NIPIRLETGRKIRKVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAFRQGQDIHTR 689 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V QVT + R+ K + + Y +A ++ + A Sbjct: 690 TASEVFGVPMDQVTSEMRSRAKAVNFGIVYGISDF---GLARDLKVSRKEAQGYIDHYFA 746 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 R + + + ++ Sbjct: 747 --------------------------------------------RCPGVRQYIDRVIKEA 762 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 E G RR K+ N R+ G R+ +NT Sbjct: 763 KETGYVNTLLNRRRYLPELFSKNFNI-------------RNFGE-RAAMNTP-------- 800 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ M+ +VL VHDE++ + P+ + + Sbjct: 801 ----------IQGTAADIIKLAMVKISQQLKEQNLSSQMVLQVHDELIFDAPENEIESLI 850 Query: 646 MLYHLMTSNPSWAKGLPLKAE 666 ML N + +PL + Sbjct: 851 MLVRQSMEN-ALQLDVPLVVD 870 >gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] Length = 893 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 91/534 (17%), Positives = 172/534 (32%), Gaps = 77/534 (14%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--A 108 P VLK+ LE+ V V N ++ VLK + + ++A P Sbjct: 364 PDARDVLKDVLEDDAVLKVGQNIKYDACVLKRH---GVSLSGISFDTMIASYVINPGLRQ 420 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 A + + KM K+++ + E + EY D +T Sbjct: 421 HNLDALAQRYLNHKMISYKDVVGKGKNARGFE----------EVSLEKACEYSCEDADMT 470 Query: 169 REIFKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + L + E +L + + G +D AL T++ E ++ Sbjct: 471 FRLRRILAKQIRDEKNEALFNELEMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQV 530 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQA 273 ++++++ G+ + ++L LF L T T + +VL + A Sbjct: 531 EKKIQADA-GMEFNLNSPQQLGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKLAESHRIA 589 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ R A + P Sbjct: 590 REILRFRSLA-------------------------------KLKSTYLDALVRMVNPETK 618 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +Q + +SDP+ I +R +A GK LV AD + IE RV Sbjct: 619 RVHTSFNQTVAATGRLSSSDPNLQNIPIRGDAGKNIRKGFMAGSGKILVAADYSQIELRV 678 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A + + + AF+ +D++ T +VT + R I K + + Y G Sbjct: 679 FAHYSQDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFGIIYGMGP--- 735 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 QK++ ++ + + +E E A+E ++ T R ++ Sbjct: 736 QKLSEELSISKEAAQDYINAYYDRY------KGVKRFKEKAIETALEKGYVTTLFNR-RR 788 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + +E + T G A K+ + + + ML Sbjct: 789 YLPDISHNNNRIRSEAERMAVNTPIQGTAADLIKKAMIEIHNRLTEAAFQSKML 842 >gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519] gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii] Length = 888 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 105/618 (16%), Positives = 199/618 (32%), Gaps = 133/618 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 LK+ EN ++ +N + +LK +I + + +A S + Sbjct: 367 LKDVFENPEIKKYGYNLKNDCLILKPY---EINLTGLYFDIAIAEYLIDSTSSNYEIKDI 423 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 ALK + + +EL+ + + + L D + + + K + T E + Sbjct: 424 ALKYNLGDVLSLEELLGKGKSKKDFKDLSDAQISGYACSVLDIVDKGKEALITTIENYNM 483 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L + + G D + + L Q D+E L+ + G + Sbjct: 484 HNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLEASIYEYA-GENFNIN 542 Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + GL T+T VL + P ++ R Sbjct: 543 SPKQLGHILFDKLGLPAIKKTKTGYSTNAEVLEALSDKHPIIDKITLYRQY--------- 593 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++ P+ R H +Q IT + Sbjct: 594 ----------------------TKLQSTYVDGLLNIINPKTGRIHSSFNQTITTTGRISS 631 Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 ++P+ I I +R +A E LV AD + IE R+LA +A ++ + AF G+ Sbjct: 632 TEPNMQNIPVRLEIGRELRKVFVAPEDMYLVDADYSQIELRILAHIANDEGLIDAFSKGD 691 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T + FNV +VTK+ R+ K + + Y +++ G++ Sbjct: 692 DIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVYGISDF---GLSNNLGISKQVA---- 744 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 K+ +R + + Sbjct: 745 ----------------------------------------KEYIDNYFARYPYVKKYMED 764 Query: 527 AFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 E+ +G +RR +P + N ++ L R +NT Sbjct: 765 IVEKAKNDGYVETYIGRRRYIPEL---GSNNFIMKNL------------GKRLAMNTP-- 807 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 +Q + D++ M+ ++L VHDE++ E+PD+ Sbjct: 808 ----------------IQGSAADVIKIAMVKVYARLKSEGLKSKLILQVHDELIIESPDS 851 Query: 640 D-EFNASMLYHLMTSNPS 656 + + A +L M S Sbjct: 852 EKSYVADLLKEEMESAVD 869 >gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315] gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315] Length = 917 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 115/699 (16%), Positives = 213/699 (30%), Gaps = 166/699 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID + D + ++ +F + H P MP+ L Sbjct: 336 IDAAALTAFDTETTALDPML--ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLT 393 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 K LE+ D V + ++ VL N DI ++ TL+ + Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLA---NYDIELNGIEHDTLLESYVVESHRTHDMDSL 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K + +++ + K + + + +T ++ Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHA 500 Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P ++E L + + I G +D A H + + +L+ + Sbjct: 501 LYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGQAY 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + +T + VL + P + + Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P P R H Sbjct: 620 R-------------------------------GLSKLKSTYTDKLPRMVNPTTGRVHTNY 648 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IA+ G ++V AD + IE R++A ++G Sbjct: 649 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISG 708 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L+AF GED++ T A F V P +V DQR I KV+ L Y A +AS Sbjct: 709 DASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASN 765 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + + ++ Sbjct: 766 LGITRDAAKLYID-----------------------------------------RYFARY 784 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V++ + ++ + + R+ L LP Sbjct: 785 PGVAQYMEDTRATAKEK-GYVETVFGRR-----------------LWLP----------- 815 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 + N RQ +Q + D++ M+ + +++ V Sbjct: 816 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQV 869 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E P+ + L +M +PL AE Sbjct: 870 HDELVLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAE 906 >gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] Length = 885 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 105/612 (17%), Positives = 207/612 (33%), Gaps = 96/612 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-QVLKEALENT-DVT 67 D + Y + ++ F+F ++H H + + KEAL+ Sbjct: 326 DTETNALDAY--NAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEAKEALKKLFKHK 383 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 IV N ++ V++ F L + + T+++A S + A + + M + K Sbjct: 384 IVGQNLKYDLAVIENNFGLRLS-SSYADTMLMAWLLNPESNVGLDTLAKRFFNHDMVKFK 442 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------- 180 +++ +N+ EY D +T +++ +L + Sbjct: 443 DVV-------------SKNENFSHVPLDKACEYASEDAWMTLKLYNKLHDMLEPRLLEIA 489 Query: 181 KEQELWYLD--QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 KE E ++ + G +D A L + D L E+ +L + ++ Sbjct: 490 KEVEFPFILTLMRMEKEGIKIDGAYFEALLKRTDGAIDALKHEIFTLCD-AQFNLNSTQQ 548 Query: 239 LKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L T LF + GL T+T VL+ P ++ R + Sbjct: 549 LGTVLFEQLGLPPVKKTKTGYSTDENVLNELLDKHPSIAKILEYRELYKLRSTY------ 602 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + L+ S G R H Q T + DP+ Sbjct: 603 --------IEPLLKLSKESPLG----------------RVHTSFIQTGTSTGRLSSKDPN 638 Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I + VR +A EG L+ D + IE R+LA + ++ +KAF G+D++ Sbjct: 639 LQNIPVKTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDIHY 698 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F Q +R++ K + L Y G ++++ T G+++ +++ Sbjct: 699 ETALKLFG---EQEAASKRSVAKSINFGLLYGMGP---KRLSETLGISMAEAKRYIES-- 750 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + E A ++ T R K+ + +H+ + L +A Sbjct: 751 ----YFATFPTIKAYVMEVAEQAKTTGYVETLLGR-KRFFDFEHANAMQYAGYLREAVNT 805 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + A + + + + + D+ L +L L++ Q Sbjct: 806 VFQGSAADLIKLSMNKIMATLIHDEAKL--LLQIHDELIF----------EVVESQAQSF 853 Query: 591 YTYGGKLTENIV 602 K+ E I Sbjct: 854 ALEAQKVMEEIY 865 >gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307] gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307] Length = 986 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 109/690 (15%), Positives = 213/690 (30%), Gaps = 149/690 (21%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALE----NTD 65 ID + + + + F +G D+ + + + EAL + Sbjct: 398 IDTETTDLNPFRAQLVGLGFCWGEADNDLAYIPIGHSGAEGQLPLAEVLEALAPWLASPT 457 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 N+ ++R VL + ++ +LA L+ L Sbjct: 458 QRKCLQNAKYDRLVL---LRHGLELNGVAVDTLLADY------LRDASARHNLEELAQRH 508 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT--------REIFKRLEP 177 + + L + + +YC DV +T +++ + E Sbjct: 509 ------YGFRPTSFSDLVGKGQTFADVPIEAAAQYCGMDVHLTYRLAIDLVQQLEQLGEA 562 Query: 178 LSSKEQELWY----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L EL + + G +DV L Q + + +L+Q+ + G + Sbjct: 563 LPQLLSELELPLEPVLAQMEATGIRIDVPYLQELGQSMGDKLQQLEQQAIA-AAGEEFNL 621 Query: 234 RCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L LF GL + +T T VL + P V +R Sbjct: 622 ASPKQLGELLFNTLGLDRKKSRKTKTGWSTDAAVLEKLEDAHPVVPLVLEHR-------- 673 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 S+ P R H + +Q +T Sbjct: 674 -----------------------TLSKLKSTYVDALPQLVESETGRVHTDFNQAVTATGR 710 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +S+P+ I S +R + + L+ AD + IE R+L + GE+ ++A+ Sbjct: 711 LSSSNPNLQNIPVRTAYSRQIRKAFLPQKDWTLLSADYSQIELRILTHLCGEEALVEAYN 770 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +G+D++ T + + +V+ ++R +GK + + Y GA Q+ A TG++ Sbjct: 771 SGDDVHALTARLLLDKS--EVSDEERRLGKTINFGVIYGMGA---QRFARATGVSQAEAK 825 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + + F W A+ ++ T R + Sbjct: 826 EFL--SRYKQRYPKVFAFLEW----QERLALSRGYVETLMGRRRP--------------- 864 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 D L + + ++ + + Sbjct: 865 ---------------------------FHFDPQGLGRL----KGTDPAEIDLDVARRGGM 893 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET- 636 Q R +Q S DI+ + M++ + ++L VHDE+V E Sbjct: 894 EAQQLRAAANAP------IQGSSADIIKKAMVDLQQLLLDQQLPARLLLQVHDELVLECA 947 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 P+ S + M S +PL E Sbjct: 948 PNALATVQSSVQRTMEQAVS--LSVPLVVE 975 >gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] Length = 874 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 115/587 (19%), Positives = 199/587 (33%), Gaps = 140/587 (23%) Query: 100 ARSNGLPSAL--KAVGEALKLSSQKMEEGKELIA--RFCKGETHECLYDRNKPNHREAWR 155 A LP +L A L ++ G + F + A Sbjct: 397 AAFAALPLSLWFDLGLAAYLLDPEQRNYGFPRLRDSLFADPTVDASAVSPDDTARAAALL 456 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 + D ++ +RL E L + + G VD+ V + Sbjct: 457 AEVYTARLDTAGLTDLVERL------ELPLIPVLLDMERAGIGVDLRSLAAFGAEVATDL 510 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271 T+L++EL +L G + R ++L LF E GL + T +T Q L P Sbjct: 511 TRLEKELHTLA-GHPFNPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQDALERLAGSNP 569 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ R + + L+ L + ++DGR+ Sbjct: 570 LVDRILEFR-KLEKLRSTYLDPLPKLADADGRI--------------------------- 601 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEA 386 H L+ + T +S+P+ I + +R C +A GK LV AD + IE Sbjct: 602 ----HTTLNNMATATGRLSSSNPNLQNIPIRGPLGRRMRECFVAGPGKTLVAADYSQIEL 657 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA ++GE L AF G D++ T + F+ A++ D+R K + L Y G Sbjct: 658 RVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERRQAKTINFGLLYGMGP- 716 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 QK++ G+ L+ + Sbjct: 717 --QKLSRDLGIKLDAAKAFI---------------------------------------- 734 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + ++ S +S ++ + ++ + + +A +RR +P + K Sbjct: 735 -AKYFERLSGLSAFYDNIVESAKT--QGYVTTLAGRRRLLPDIESKNS------------ 779 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKA 620 Q R+ +VQ + DI+ M+ + +A Sbjct: 780 ---------------QLASQARRQ------AINTVVQGGAADIIKMAMLAAHKDADLKRA 818 Query: 621 GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 G +VL +HDE++ ETP DT + L LM A +PL + Sbjct: 819 GAVMVLQIHDELLLETPMDTADAAGKRLSDLMCGVIKLA--VPLVVD 863 >gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18] gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] Length = 897 Score = 256 bits (654), Expect = 1e-65, Method: Composition-based stats. Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDIDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L + E L + + G +D + ++ +L+ + Sbjct: 480 HFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G + +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P L R H Sbjct: 599 YR-------------------------------HLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA +G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LK F D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212] gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212] Length = 916 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 99/614 (16%), Positives = 181/614 (29%), Gaps = 153/614 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 + LK LE+ + N +++ V N DI ++ TL+ + Sbjct: 392 KKLKPWLESATKPKLGQNLKYDKHV---FANHDIQLNGIAHDTLLQSYVLESHRPHNMDS 448 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 AL+ K + + A +Y D +T + + Sbjct: 449 LALRHLDVKTIS----------YDDVTGKGVKRIGFDEVAIDTATQYAAEDADITFRLHQ 498 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L P E + + I G +D L + + + L+Q+ Sbjct: 499 ALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQSHELGEKLHALEQQA 558 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFN 278 ++ G + ++++ LF + L + T T + VL P + Sbjct: 559 YDIS-GQPFNLNSPKQIQEILFHQLKLPIVKKTPTGVPSTDEDVLQQLALDYPLPKLLL- 616 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + S+ P R H Sbjct: 617 ------------------------------NYRSLSKLKSTYTDKLPLMMDRNTGRVHTN 646 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + +SDP+ I +R IA G +++ AD + IE R++A ++ Sbjct: 647 YSQAVAVTGRLASSDPNLQNIPVRTSEGRRIREAFIAPAGYRIISADYSQIELRIMAHIS 706 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LKAF GED++ T A + QV ++QR KV+ L Y +A+ Sbjct: 707 QDEGLLKAFAAGEDIHSATAAEILGIPLNQVDQEQRRHAKVINFGLIYGMSEF---GLAT 763 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + + + Sbjct: 764 QLGIERSAA--------------------------------------------RAYMERY 779 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRD 572 +R ++ + + Q E+ G RR L LP + R Sbjct: 780 FARYPKVESYMQQTREKARRLGYVETVLGRR---------------LWLPEINNANGNRR 824 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVL 626 G R+ +N Q + DI+ M+ K +++ Sbjct: 825 QGAERAAINAPM------------------QGTAADIIKLAMIAVHSWLHKEKLHSKLIM 866 Query: 627 TVHDEIVCETPDTD 640 VHDE+V E P+ + Sbjct: 867 QVHDELVLEVPENE 880 >gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] Length = 864 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 110/649 (16%), Positives = 203/649 (31%), Gaps = 160/649 (24%) Query: 41 PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 P E+ P + LK L + +T + H+ + RTVL +D + +LA Sbjct: 351 PAEV--LEKSPEVKSDLKAVLADPGITKIIHDGKYARTVLAK-IGMDFV---YNFDTMLA 404 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 PS + E++ + G EL KG +E + Sbjct: 405 AYLLDPSKPRYDLESVVFDNL----GVEL-----KGTEDPGRRVAYLIPLKEIMSEKLKS 455 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 C E+F E L ++ + G VD +L++ + +L Sbjct: 456 C-----AMEELFF------GVEMPLSFVLSDMEMTGIKVDPEKLESLSREFGEKLEELTG 504 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277 E+ L G+ + ++L LF + L + ++ VL K P ++ Sbjct: 505 EIYRLA-GVEFNINSPKQLGEVLFEKLNLPVIKKKKSGYSTDAEVLEKLKNAHPVVEKIL 563 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + R H Sbjct: 564 EYRFLM-------------------------------KMKSTYADGLLALVDKSTYRIHS 592 Query: 338 ELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391 +Q IT +++P+ I I +R +A S L+ D + IE RVLA Sbjct: 593 NFNQTITATGRISSTEPNLQNIPVKTDIGRKIRGVFVAESPEHVLLSGDYSQIELRVLAH 652 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G++ ++AF GED++ T + F V P QVT R K + + Y + Sbjct: 653 LSGDEGLIEAFIKGEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNFGIIYGISDY---GL 709 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A G++ ++ Sbjct: 710 AQNLGISTAEAREYIE-------------------------------------------- 725 Query: 512 QKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +R ++ + + + +G I +RR +P + + + RS Sbjct: 726 NYLNRYPKVRDYIRETIRNARMSGYVTTILNRRRYIPEINSRNY---------NLRSFA- 775 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDI 624 R +NT +Q + DI+ M+ T + Sbjct: 776 -----ERVAMNTP------------------IQGSAADIIKVAMVKITNHFREYGLKAKM 812 Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE---GYE 669 ++ VHDE++ + P ++ E +++ M + +PL + GY Sbjct: 813 LIQVHDELIFDVPKSELEVVKNIVKDDMENAIP--LKVPLVVDFKEGYT 859 >gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] Length = 933 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 96/588 (16%), Positives = 171/588 (29%), Gaps = 85/588 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVMPQVLKEA------------ 60 D G+ L P + H + Q +++ Sbjct: 357 DTETDGLDA----QQCRLVGISLAIAPGKACYIPLDHQTTLDQPVRQPAIAEIAAALNPI 412 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V + N F+ VL+ +P+ I +L A + L + Sbjct: 413 LADPTVLKIFQNGKFDLAVLRRH---QMPVIAPIDDTMLISYAQEAGAHGHGMDELSV-- 467 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 + G I+ + P + Y D VT ++ L P Sbjct: 468 --LHLGHSPISY----DQVTGTGRNRLPFPQVPIDKATAYAAEDADVTLRLWHALRPRLR 521 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E+ L + + G VD A ++ + ++ E+ L G Sbjct: 522 ETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRRMSADFALRMADMETEIHQLA-GRP 580 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + ++L LF E GL ++T ++ + + ++ R Sbjct: 581 FNLASPKQLGEVLFDEIGLTGSKRSKTGAWGTDAATLQAIADESGHALPAR--------- 631 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L + ++ PR R H IT Sbjct: 632 -----------------ILDWRQLAKLKSTYADALVEDVNPRTGRVHTSFQMAITTTGRL 674 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +++P+ I +R IA G L+ AD + IE R+LA +A +F Sbjct: 675 SSNEPNLQNIPIRTEEGSRIRRAFIADPGHVLISADYSQIELRLLAHVADIPQLKDSFAN 734 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T + F V + R K + + Y A +A + ++ Sbjct: 735 GEDIHARTASEVFGVPMQGMDSLTRRRAKAINFGIIYGISAF---GLARSLAISPGEARQ 791 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQKHSRVSELWNE 523 + A R E E A + F+ T R + W R Sbjct: 792 YIDAYFARYP------GIRDYMERTKEEARINGFVVTPFGR--RCWVPGIADRNPARRGY 843 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 + G A KR V L + D + ++L L++ Sbjct: 844 AERQAINAPLQGGAADIIKRAMVRLPAVLADNSFQTRMLLQVHDELLF 891 >gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy] gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy] Length = 948 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 100/598 (16%), Positives = 194/598 (32%), Gaps = 85/598 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVT 67 DL G+ + VI F+F +++ VH+ + +L+E L + ++ Sbjct: 384 DLETTGLDEML--AQVIGFSFCWEEGKSYYVPLVHETKELVDREQVRSLLEEYLGSGRLS 441 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 +V N ++ VL+ + + +P + + T+V A S A K K Sbjct: 442 LVGQNIKYDYKVLRQ-WGI-MPKNIYFDTMVAAWLLDSTSVFNMDYLAEKYLDYKTVHYT 499 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 +++ + D+ + +F Y D VT ++K L Sbjct: 500 DIVPK-----------DKLLSDIPLEQAVF--YGAEDADVTFRLYKLFSELLGARNLRSL 546 Query: 180 --SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + + G ++ L L+ + + ++ ++ G + + Sbjct: 547 LDEVEMPLLVIIANMELAGIYLERKLIEPLSAEFEGRIDAIRNQIFAIC-GHAFNLNSPQ 605 Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L+ LF+E + T + T VL + P+ + Sbjct: 606 QLQEVLFVERNIPTGAKTRSGFSTSTDVLEPLRDDYPEVELIL----------------- 648 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 Q+ ++ P Q + R H Q T DP Sbjct: 649 --------------QYRTLNKLKTTYIDKLPLQINEKTHRIHPSFAQTGTETGRLSCKDP 694 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +RS + G + AD + IE VLA MA + AF G D++ Sbjct: 695 NLQNIPVRTEEGRRIRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAFAAGIDVH 754 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 +T + F+V QVT QR I K + + Y G + A + + + Sbjct: 755 SSTASLIFDVPLDQVTPVQRRIAKTINFGVMYGMGTHSL---AMDLKIPHSEAKQFID-- 809 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 E + +F + + +G + + +SR + + + Sbjct: 810 QYFERYSSVRSFVEATKTMSQQVGSVSTLLGH-----VRTITEINSRSAVERAKAERIAV 864 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 T+ G A K + + + K K L+L L++ ++ Sbjct: 865 NTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEAEIEETKAVVKE 922 >gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23] gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23] gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 923 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 102/601 (16%), Positives = 185/601 (30%), Gaps = 99/601 (16%) Query: 6 IDFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 +D ET S + G+ +E + F + PV+L +L+ L Sbjct: 347 LDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPLL 402 Query: 62 ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 E+ V V + ++ VL+ + D + ++ T AR + A + +G Sbjct: 403 EDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYE 462 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +G + I P + +Y D +T + L Sbjct: 463 TMKYVDLVGKGAKQI-----------------PFSHVGVQEATQYAAEDADITLRLHCVL 505 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P E L + + I G +D + + + Q+ Sbjct: 506 APKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMD 565 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF E L + +T + L + Sbjct: 566 LA-GRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP------- 617 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R L++ ++ P P R H Sbjct: 618 ------------------------RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYH 653 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +SDP+ I +R +A G+KL+ D + IE R++A ++G+ Sbjct: 654 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ A F +VT ++R K + L Y A +A Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAF---GLARQL 770 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + D R EN + A + ++ T R + S Sbjct: 771 GISRGEAQDYIA------LYFDRFAGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIAS 823 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A KR V + L + R+L+ V + Sbjct: 824 GNQTQRAGAERAAINAPMQGTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHD 877 Query: 576 N 576 Sbjct: 878 E 878 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 18/172 (10%) Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN- 556 G + V R+ ++ AF + G I + +D +Y + Sbjct: 734 VFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLG--ISRGEAQDYIALYFDRFAGV 791 Query: 557 --NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILA 611 + R Y + V R YLN+ Q R +Q + DI+ Sbjct: 792 RDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA-AINAPMQGTAADIIK 850 Query: 612 EGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN 654 M+ + ++L VHDE+V E + + M + Sbjct: 851 RAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902 >gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49] Length = 641 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 115/683 (16%), Positives = 201/683 (29%), Gaps = 152/683 (22%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64 D + ++ +F + H P +P+ L K LE+ Sbjct: 69 DTETTSLDPMV--AQLVGLSFSTEPGKAAYLPVAHRGPDLPEQLPLDDVLARLKPWLESA 126 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + V + ++ VL I TL+ + AL+ K Sbjct: 127 ERKKVGQHLKYDAQVLANYGIELNGIE--HDTLLESYVLESHRTHDMDSLALRHLGVKTI 184 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + +++ + K + + + +T ++ L P ++E Sbjct: 185 KYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------ITLQLHHALYPQVAREPG 234 Query: 185 LWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L + + I G +D A + + +L+ + L G + Sbjct: 235 LQRVYREIEMPVSLVLRKMERTGVLIDDARLQAQSTEIATRLIELEGQAYELAGG-EFNL 293 Query: 234 RCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 +++ F + L + +T + VL + P + +R Sbjct: 294 GSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR--------- 344 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G S+ P P R H Q + Sbjct: 345 ----------------------GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRL 382 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R IAS G ++V AD + IE R++A ++G+ L+AF Sbjct: 383 ASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 442 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T A F V P +V DQR I KV+ L Y A +AS G+ + Sbjct: 443 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAF---GLASNLGITRDAAKL 499 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + A E+ A E ++ T R + + + Sbjct: 500 YIDRYFARYP------GVAQYMEDTRTVAKEKGYVETVFGR-RLWLPEINGGNGPRRQAA 552 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A G A K + + L Sbjct: 553 ERAAINAPMQGTAADLIKLSMIAV------DGWL-------------------------- 580 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFN 643 +RD LA M ++ VHDE+V E PD + Sbjct: 581 ---------------------TRDKLASRM----------IMQVHDELVLEVPDDELSLV 609 Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666 L +M +PL AE Sbjct: 610 REKLPEMMCGVAK--LKVPLVAE 630 >gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c] gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c] Length = 923 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 103/601 (17%), Positives = 184/601 (30%), Gaps = 99/601 (16%) Query: 6 IDFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 +D ET S + G+ AE + F + PV+L +L+ L Sbjct: 347 LDTETDSLDPMQAVLIGLSFAAEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPLL 402 Query: 62 ENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 E+ V V + ++ VL+ + D + ++ T AR + A + +G Sbjct: 403 EDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYE 462 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +G + I P + Y D +T + L Sbjct: 463 TMKYVDLVGKGAKQI-----------------PFSHVGVQEATRYAAEDADITLRLHCVL 505 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P E L + + I G +D + + + Q+ Sbjct: 506 APKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMD 565 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++L+ LF E L + +T + L + Sbjct: 566 LA-GRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP------- 617 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R L++ ++ P P R H Sbjct: 618 ------------------------RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYH 653 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +SDP+ I +R +A G+KL+ D + IE R++A ++G+ Sbjct: 654 QAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AFE+G D++ A F +VT ++R K + L Y A +A Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAF---GLARQL 770 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + D R EN + A + ++ T R + S Sbjct: 771 GISRGEAQDYIA------LYFDRFAGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIAS 823 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +A G A KR V + L + R+L+ V + Sbjct: 824 GNQTQRAGAERAAINAPMQGTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHD 877 Query: 576 N 576 Sbjct: 878 E 878 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 16/132 (12%) Query: 538 IIARKRRDVPLVYMKKDKN---NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREY 591 I + +D +Y + + R Y + V R YLN+ Q R Sbjct: 772 ISRGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAG 831 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEF 642 +Q + DI+ M+ + ++L VHDE+V E + Sbjct: 832 AERA-AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT 890 Query: 643 NASMLYHLMTSN 654 + M + Sbjct: 891 LVHEVSARMAAA 902 >gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] Length = 931 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 109/599 (18%), Positives = 200/599 (33%), Gaps = 99/599 (16%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56 + D ET S L D ++ +F F C +V Sbjct: 357 LKEFAFDTETTSLTTL----------DAELVGISFSFAPGEAFFVYCAESALSRETAIRV 406 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LEN ++ + N ++ VLK N + + +LA P + Sbjct: 407 LKPILENPEIGKIGQNLKYDMLVLK---NYGVRVQPVRFDTMLASYVLNPD------KTH 457 Query: 117 KLSSQKMEE-GKELIARF---CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L + G E + KG++ + +Y+ + Y D V ++ Sbjct: 458 NLDDLAADHLGLETVKYADLVGKGKSEKSIYEVEPKTLSD-------YACQDADVALQLK 510 Query: 173 KRLE-------PL----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 LE PL E L + + G +DVA+ TL++ + E ++ + Sbjct: 511 NVLEKALGENEPLKKICEELEFPLVGVLADMEHEGVRLDVAVLKTLSETLGTELGRVSKI 570 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFN 278 + G + ++L LF + L + T+T RVL + P A Q+ Sbjct: 571 IYD-AAGEAFNLDSPKQLSEILFEKLKLPAKRRTKTGYSTDVRVLEELAESFPVAKQILE 629 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + P P+ R H Sbjct: 630 YRSL-------------------------------QKLKSTYVDALPNLVHPKTGRIHTS 658 Query: 339 LDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWM 392 +Q I +S+P+ I I +R + S+ L+ AD + IE R+ A + Sbjct: 659 FNQHIAATGRLSSSNPNLQNIPIRTEIGREIRGAFVPSDAHHTLLSADYSQIELRIAAEL 718 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ L AF+ ED++ TT F +VTKD R K + + Y +A Sbjct: 719 SGDPTMLGAFQNREDIHSTTAKLIF--ETDEVTKDMRRKAKEVNFGVLYGIMPF---GLA 773 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 ++ ++ ++++ E + A ++ T R ++ R Sbjct: 774 QRLDISQAEAKEII------SQYKEKYPMIFSYLEGILDKARASGYVETLLGR-RRYIRD 826 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVY 570 +S+ + + +A T G A K+ + + + K ++L L++ Sbjct: 827 LNSKNFSIRSAAERAAINTPIQGTAADMIKKAMLGIASDIHKQSLRSRMILQVHDELLF 885 >gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] Length = 607 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 95/651 (14%), Positives = 179/651 (27%), Gaps = 154/651 (23%) Query: 47 CVHDPVMPQVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 + +V+ AL E+ V + N ++ ++ P+ + A Sbjct: 71 LTEGQLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARYGVHLAPVDDTMLLSY-ALH 129 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162 GL + + + + KELI T +H Y Sbjct: 130 AGL-HNHGMDELSERYLNHRPIPIKELIGSGKSAVTF---------DHVPV-EKAVAYAA 178 Query: 163 GDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D +T +++ +P + E+ L + + G VD ++ Sbjct: 179 EDADITLRLWQHFKPQLPQSRVTTVYETLERPLIPVLTRMEMAGVQVDRDTLSRMSNAFA 238 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 + +L++E+ + G + ++L LF E G + T VL Sbjct: 239 QKMVQLEEEIHA-AAGRSFNVGSPKQLGEILFDEMGFQGGVKGKNGAWGTGADVLEDLAT 297 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + R ++ Sbjct: 298 EHALPGLILDWRQ-------------------------------VAKLKSTYTDALQDHI 326 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383 P R H + ++DP+ I +R +A GK LV D + Sbjct: 327 NPDSGRVHTSYSIAGANTGRLASTDPNLQNIPVRTEEGRRIRGAFVAPAGKVLVSLDYSQ 386 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA +A +AF+ G D++ T + FNV Q+T + R K + + Y Sbjct: 387 IELRILAQIAQIDALKEAFQQGLDIHAATASEMFNVPLDQMTPEIRRQAKAINFGVIYGI 446 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A +A + + + Sbjct: 447 SAF---GLARNLRIPRDRAQGFID------------------------------------ 467 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + R + + Q ENG RR + P Sbjct: 468 --------RYFERFPGIRAYMDQTIAFAKENGHVRTLFGRR---------------INTP 504 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620 + R+ +N +Q + DI+ M+ A Sbjct: 505 EINAKGPHAGFARRAAINAP------------------IQGTAADIIRRAMIQMDPAIAH 546 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E + + + +M A + L + Sbjct: 547 LPARMLLQVHDELLFEVEENAADELTAIAKRIMEGAADPAVHLDIKLVVDA 597 >gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4] gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4] Length = 868 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 111/636 (17%), Positives = 199/636 (31%), Gaps = 156/636 (24%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 + P + + LE + +++ + L A ++LA P Sbjct: 355 LLEGPEVLKSFFRLLEEKGGLVSTYDAK---SCLHALEPYGFKPEMIGFDVLLAAYLVNP 411 Query: 107 SALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 +A +G A + + + G EL E + +Y + EY V Sbjct: 412 AANNELGAIAFEHAGFMLSPGAEL------PEKAQAIYQLTPILKSKIKLQEQEYLYYSV 465 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E L + + G V +L++ + + +L +E+ L Sbjct: 466 ----------------ELPLAAVLADMEKVGVKVSEERLRSLSKELGEQLAQLSEEIYKL 509 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRA 283 G + +L LF + GL T+T S +KL +V R A Sbjct: 510 A-GERFNLNSPRQLGYILFEKLGLKPVKKTKTGYSTDASVLEKLAEHEIVAKVLVYRQLA 568 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + P P R H Q Sbjct: 569 -------------------------------KLKSTYTDALPELIDPATGRLHTTFLQAG 597 Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 T +++P+ I + +R +A L+ AD + IE RVLA ++ + Sbjct: 598 TATGRLASAEPNLQNIPVRDSLGRRIRQAFVAEGPDYVLLSADYSQIELRVLAHLSEDPG 657 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF GED++ T A F V+P +VT + RA KV+ + Y + + Sbjct: 658 LCEAFVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVVNFGIVYGMSDYGLSQ---ELKI 714 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 ++ +++ RV Sbjct: 715 EPGEAHEYIERYF-----------------------------------------RRYPRV 733 Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + Q E G I +RR +P + L S R+ R +G Sbjct: 734 KQF---IERVIAQAREKGYVTTILNRRRYIPEI------------LSSNRNQ--RQLGE- 775 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHD 630 R +NTT +Q + D++ + M++ + ++L VHD Sbjct: 776 RLAINTT------------------IQGSAADLIKKAMVDIHRQLKGQGFKCRMILQVHD 817 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 E++ E P + E A ++ M +P+KA Sbjct: 818 ELLFEVPKEELEKVAPIIKSTMEQALP--FKVPIKA 851 >gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] Length = 928 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 111/649 (17%), Positives = 204/649 (31%), Gaps = 162/649 (24%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 WD V + P E+ + N ++ ++ +A I + +LA Sbjct: 404 WDLVKQSLQPIW-----EDPNRPKSLQNCKYDLSIFRAH---SIRLQGIQFDPMLASYVL 455 Query: 105 LPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 P A L L + ++E L + + EY Sbjct: 456 NPEASHNLADLAASYLNLPT----------------TSYEKLLGKAESLADLPIAKVAEY 499 Query: 161 CKGD-----------VTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLN 208 C D ++ RL L E L ++ + + G +D + Sbjct: 500 CGTDAYCAYRLVPILTEKLQQTDPRLWNLFVQVELPLAHVLEEMEWVGIRIDTEFLRQFS 559 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVL 263 Q ++ E L+Q+ + G V + ++L + LF + L + +T T VL Sbjct: 560 QELEKELHSLEQKAYAQA-GEVFNLNSPKQLGSLLFEKLKLDVRKTRKTATGYSTDASVL 618 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + LQ+ ++ Sbjct: 619 EKLEGDHPV-------------------------------IETILQYRTLAKLKSTYVDA 647 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P R H +Q +T +S+P+ I S +R + EG L Sbjct: 648 LPALVRRDTGRVHTSFNQTVTATGRLSSSNPNLQNIPIRSEFSRRIRQAFVPQEGWLLAS 707 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R+LA ++ E ++ F +GED++ T F +VT ++R + K + Sbjct: 708 ADYSQIELRILAHLSQEPTLIECFRSGEDVHTLTARLLF--EKQEVTSEERRLAKTINYG 765 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y GA Q+ A T G++L ++ + E + + R + +H + Sbjct: 766 VIYGMGA---QRFARTAGVSLAEAKEFLRRFN--ERYAGVFAYLRATEAFVEKHGYVETL 820 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +G R+ +S+L Sbjct: 821 LGR---------RRYFPNLSQL-------------------------------------- 833 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 +R R+ +N + G ++ I A+ R L E + N Sbjct: 834 ---------SGHRKQAELRAAVNAPIQ---------GSASDIIKVAMVR--LQEKLQNFR 873 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 ++L VHDE+V E ++ + L M +PL + Sbjct: 874 S---RLLLQVHDELVFEVEPSEWQDLRPLIQREMEEAVP--LSIPLVVD 917 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 172/544 (31%), Gaps = 74/544 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVLKEALENTDVTIVA 70 D G + P + W P ++++ E+ + + Sbjct: 392 DTETTGFDI----FNDRIVGLSLAVEPFKAWYVPFLEKDTPEYAEIVRPLFEDEKIAKIG 447 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N F+ VL+ + I R T++L S A K + K E + LI Sbjct: 448 QNIKFDLMVLRR-LGITIR-GRMYDTMILHYLLDPESRHNMNALAEKYLNYKPIEIETLI 505 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181 + K T + + EY D VT ++ + L P+ + Sbjct: 506 GKGSKQLTMDLVNV----------ERVKEYAAEDADVTLQLKQALYPMIEQIGLQHLYFE 555 Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E+ + + I G +D ++ + +L+ + + + +L Sbjct: 556 IEEPMIAVLADIEMAGMRIDSEALAVYAVELNRKLAELEAAIRTEAGEPNLNINSARQLG 615 Query: 241 TWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + + +T+T +L + ++ + Sbjct: 616 EVLFGKMRIAEKPKMTKTKQFCTDEDYLQLFARKHRIVDL-------------------- 655 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L++ G + P R H +Q +T +++P+ I Sbjct: 656 -------ILEYRGVKKLLSTYVEALPQLVNRSTGRIHTSFNQAVTATGRLSSTNPNLQNI 708 Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R I + L+ AD + +E R++A ++G++ + AFE GED++ T Sbjct: 709 PVRDDMGRRIRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLIAAFEHGEDIHAATA 768 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A+ FN +VT ++R K + Y A + + ++ A Sbjct: 769 AKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQ---RLEIPRKEAKEIIDGYFASY 825 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + +N E A E+ F+ T R ++ S + + Sbjct: 826 P------GVKKYMDNVVEKAKEEGFVSTIFGR-RRYLNDIASHNAIARGLAERNAVNAPI 878 Query: 534 NGKA 537 G A Sbjct: 879 QGSA 882 >gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] Length = 950 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 108/680 (15%), Positives = 192/680 (28%), Gaps = 169/680 (24%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMP 54 +++ +D ET S L P E + + Sbjct: 376 LSSFALDTETTS------------LNTFEAELVGISISVKPQEAVFIYCSPEGLKPEKAL 423 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LEN + N ++ VLK + + +LA P + + Sbjct: 424 SILKPVLENPAIEKWGQNLKYDILVLKNY-GIQLAPTG--FDTMLASYVINPEETHNLDD 480 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+ + ++ + C + P + Y D + + Sbjct: 481 ---LAQRHLQYRTTTYSELC------GTGKKAVPLRQVPLEALKNYACQDADIALRLQNT 531 Query: 175 LEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE QEL +L + RG +D V L + + Sbjct: 532 LEKQLKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKHLEKTATKVASLTADLKERIY 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNR 280 + T G + ++L LF GL + T+T +VL + P A + Sbjct: 592 A-TAGSTFNIDSPKQLGEILFTRLGLPAKKTTKTGYSTNVQVLEELAMIHPIAQDILE-- 648 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + P P + H + Sbjct: 649 -----------------------------YRSLQKLRSTYIEALPKILNPATGKLHTSFN 679 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAG 394 Q IT +S+P+ I + +R IAS + + AD + IE R+ A ++G Sbjct: 680 QHITATGRLSSSNPNLQNIPIRTELGKEIRKAFIASTNRNFLLSADYSQIELRIAAELSG 739 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AF ED++ T F+ VT D R K + + Y ++ Sbjct: 740 DKKLIEAFRNQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLYGIQPY---GLSMR 794 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 ++ ++ T Sbjct: 795 LNISQKEAKAIIDTYK-------------------------------------------- 810 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 S+ L+ L Q ENG RR + + R+ R Sbjct: 811 SKYPGLFEALDALVRQAAENGFVTTLLGRRR-------------YIAALNSRNGNIRKA- 856 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628 R+ +NT VQ + DI+ M + ++L V Sbjct: 857 AERAAMNTP------------------VQGTAADIIKYAMCLIENTMQEHKMHSTMLLQV 898 Query: 629 HDEIVCETPDTDEFNASMLY 648 HDE+V ET + + + Sbjct: 899 HDELVFETNEEEHEKLETMV 918 >gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] Length = 883 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 112/621 (18%), Positives = 201/621 (32%), Gaps = 151/621 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + L EN+ + AH+ ++ +LK N I + +LA P + + Sbjct: 360 KKLAPLFENSRIGFYAHHLKYDLHILK---NYGISLANISFDTILASYILTPHLRQHSLD 416 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFK 173 AL L GK I + +N+ E YC DV T + + Sbjct: 417 ALTLEH----FGKTKI-----PTSDLIGKGKNQITMLEVPIEKVCAYCCEDVDYTYRLKQ 467 Query: 174 ---------RLEPLSSKEQELW-YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +LEPL + + + G +D + TL + V+ + +L+ E+ Sbjct: 468 IFASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRLENEIH 527 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280 ++ + + ++L LF + + T T VL + + A ++ R Sbjct: 528 AIAD-EPFNLKSPKQLSGILFEKMKIPPPKKTATGYSTSAEVLETLQNEYAIAKKMLEFR 586 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + P + P+ R H + Sbjct: 587 SLE-------------------------------KLRSSYIETLPKEINPKTGRIHPTFN 615 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q + DP+ QI + VR + G + AD + IE R+LA + Sbjct: 616 QSVAATGRLSCQDPNLQQIPIRTPLGREVRKAFRPEKQGWSYLSADYSQIELRLLAHFSE 675 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AFE ED++ T A N+ QVTK+QR K + + Y A ++ Sbjct: 676 DPTLISAFENNEDIHTHTAATVLNIPLEQVTKEQRRQAKAVNFGILYGQQA---WGLSKE 732 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++L + +KT Q++ Sbjct: 733 LGISLEEASAFIKTYF-----------------------------------------QRY 751 Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 RV + + E+T + G+A I + R +P + K P R Sbjct: 752 QRVKDF---VESCKEKTRKTGRAMTIIGRERPIPEIDSKN---------PQIRGAA---- 795 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLT 627 R +NT Q + D++ + M+ + ++L Sbjct: 796 --ERLAVNTPL------------------QGTAADLIKKAMIVIDEKLMRGQHLGFMILQ 835 Query: 628 VHDEIVCETPDTDEFNASMLY 648 +HDE++ E PD + L Sbjct: 836 IHDELIFEIPDFEITAIEQLV 856 >gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] Length = 976 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 109/697 (15%), Positives = 203/697 (29%), Gaps = 176/697 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVMPQ-------- 55 +D ET S L D ++ F + +L H + Sbjct: 385 LDTETNSLNPL----------DAELVGIGFCLGEESNDLFYIPLGHQSQKDEMNQLAIED 434 Query: 56 ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSAL 109 L+ +E+ + N F+R + +N + + +LA N L Sbjct: 435 VFLNLRTWIESPEKEKTLQNCKFDRQI---FYNHGLNLSGVTFDTLLADYILNNQEKHGL 491 Query: 110 KAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + F K + + +NK YC DV +T Sbjct: 492 SEICF----------------REFGFKPPSFKETVGKNKDFSFVDINHASIYCGYDVFLT 535 Query: 169 REIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 +I K + E L + + G +D+ + L++ + Sbjct: 536 YKIAKIFKERFRKEKKELTKLFKEIELPLEQVLSGMEMSGISIDITYLNELSRELKSTLA 595 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTP 271 +++ + + + ++L LF + L + +T T VL + Sbjct: 596 NIEENVFEIAK-QEFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVEEHE 654 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + +R S+ P + Sbjct: 655 IIPYLIKHR-------------------------------TLSKLLSTYIDALPNLINKK 683 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 R H +Q T +S+P+ I S +R + +G KL+ AD + IE Sbjct: 684 TGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYSQIEL 743 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +A E+ + AF +D++ T F + D+R +GK + + Y G Sbjct: 744 RILAHLANEEILITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINFGVIYGMG-- 799 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +K A +TG++ + + + F E A+ ++ T R Sbjct: 800 -IKKFARSTGVSTTEAKEFL--IKYKKRYAKIFKFL----ELQERLALSKGYVETIFGRK 852 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++ K DKN L ++ Sbjct: 853 RE------------------------------------------FKFDKNGLGRLIGKEP 870 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRDILAEGMMNATKAGYD 623 + + L +Q S DI+ M+ K + Sbjct: 871 Y-------------EIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLE 917 Query: 624 ------IVLTVHDEIVCET-PDTDEFNASMLYHLMTS 653 ++L VHDE++ E PD E ++ M Sbjct: 918 MNIPVKMLLQVHDELLFEVKPDFLEITKQLVKETMED 954 >gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 377 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 135/365 (36%), Positives = 178/365 (48%), Gaps = 45/365 (12%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F +Y + DV R++ KRL + E LW+LDQTINDRG VD LA V Sbjct: 3 WAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L + LT G+V ++ + L L G+ L D+ + T +R L L Sbjct: 63 ERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDD-PLLPE 121 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLPR Sbjct: 122 TVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181 Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P+ S E + I + D + + S +RSC+IA KKLVVADL+ IE RVL Sbjct: 182 PTLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVL 241 Query: 390 AWMAGEQWKLKAF----------------------------------------ETGEDLY 409 AW+AGE KL AF G+D+Y Sbjct: 242 AWLAGETPKLHAFGEFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIY 301 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 YA SF +AP VTK QR IGKV ELALGY GG AF A+ ++L A Sbjct: 302 KRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAIAGYYPPP 361 Query: 470 SAPEE 474 + E Sbjct: 362 ISTHE 366 >gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273] gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273] Length = 945 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 104/669 (15%), Positives = 189/669 (28%), Gaps = 163/669 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------DCVHDPVMPQVLKEALENTDV 66 +D + + L P + + ++L+ LEN + Sbjct: 376 VDTETTSL----DTFEAELAGISISAEPAKARFISFAGTGLDRGRSI-EILRPLLENPAI 430 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126 N ++ VLK L++ + T++ + A K + Sbjct: 431 PKTGQNLKYDILVLKNY-GLELGPVGF-DTMLASYVLDPDGKHNLDDMAALHLRLKTTKY 488 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186 EL G L+ + +Y D + ++ E L Sbjct: 489 DEL-----TGTGKNRLH-----IYDVEPAKLTDYACQDADLALQLEGAFTRNLEAEPRLM 538 Query: 187 YLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 L QTI +G +D + V + L + + + G + Sbjct: 539 ELCQTIEFPLVSVLAKMEHQGISIDSKHLEETSMAVGHQLESLRETIHA-AAGTDFNIDS 597 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF GL + T+T VL L P + R Sbjct: 598 PKQLSHILFNVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVSDLLLYRSL---------- 647 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + P PR R H +Q +T +S Sbjct: 648 ---------------------QKLKTTYIDALPKMVNPRTGRVHTSFNQHVTATGRLSSS 686 Query: 353 DPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +P+ I + +R I + L+ AD + IE R+ A ++G+ ++AF G Sbjct: 687 NPNLQNIPIRTPLGREIRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLIEAFRNGL 746 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T F+ +T D R K + + Y ++ + N ++ Sbjct: 747 DIHAETARVIFDT--EDITADMRRKAKEVNFGVLYGIQPF---GLSKRLNIPRNEAREII 801 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 T +R+K+ L++ L Sbjct: 802 DT-----------------------------------------YREKYP---GLFSSLEG 817 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 E+ +NG RR ++ N R+ +NT Sbjct: 818 VIEEGRKNGFVTTLLGRRRYLRDLTSRNSN--------------VQKAAERAAMNTP--- 860 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYD--IVLTVHDEIVCETPDTD 640 +Q + DI+ M A ++L VHDE+V ET + + Sbjct: 861 ---------------IQGTAADIIKCAMNLCSRRIDAASMQSVMLLQVHDELVFETTEDE 905 Query: 641 EFNASMLYH 649 + L Sbjct: 906 KEGLKSLVE 914 >gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5] gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5] Length = 917 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 118/698 (16%), Positives = 206/698 (29%), Gaps = 164/698 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID + D + ++ +F + H P +P+ L Sbjct: 336 IDAAALTAFDTETTALDP--MTARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVLA 393 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + LE+ D V + ++ VL I TL+ + A Sbjct: 394 RLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLA 451 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ K + +++ + K + + + +T ++ + L Sbjct: 452 LRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD----------ITLQLHQAL 501 Query: 176 EPLSSKE--QELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P ++E E Y D + G +D AL + + +L+ + Sbjct: 502 YPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYE 561 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + +++ F + L + +T + VL + P + +R Sbjct: 562 LAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR 620 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P P R H Sbjct: 621 -------------------------------GLSKLKSTYTDKLPRMVNPATGRVHTNYA 649 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + ++DP+ I +R IAS G ++V AD + IE R++A ++G+ Sbjct: 650 QAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF GED++ T A F V P +V DQR I KV+ L Y A +AS Sbjct: 710 ASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASNL 766 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + K + + Sbjct: 767 GITR--------------------------------------------DAAKLYIDRYFT 782 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + + E G RR L LP Sbjct: 783 RYPGVAQYMEDTRTTAKEKGYVETVFGRR---------------LWLP------------ 815 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 + N RQ +Q + D++ M+ + +++ VH Sbjct: 816 EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVH 870 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+V E PD + L +M +PL AE Sbjct: 871 DELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAE 906 >gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083] gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083] Length = 945 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 96/637 (15%), Positives = 182/637 (28%), Gaps = 150/637 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V + N ++ + PI + A+ GL + Sbjct: 423 LKPLLEDPSVMKIGQNMKYDAKIFARYGIEIAPIDDTMLISY-AQHAGL-HNHGMDALSE 480 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K L+ +DR +H Y D +T +++ L+ Sbjct: 481 RYLGHTPIPIKPLLGTG----KSAITFDRVPIDHA------TPYAAEDADITLRLWQHLK 530 Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P + E+ L + + G VD + ++ + L+ E+ + Sbjct: 531 PTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVLSRMSNAFAQKMAGLEAEIHEMA 590 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++ LF E GL + +T +L ++ + R Sbjct: 591 -GHSFNVGSPAQVGEILFDEMGLEGGKKGKNGKYSTGADILEDLATEHEMPRRILDWRQL 649 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ P R H Sbjct: 650 -------------------------------SKLKSTYTDALQDHINPDTGRVHTSYSIA 678 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 ++DP+ I +R IA EGK LV D + IE R+LA +AG Sbjct: 679 GASTGRLASTDPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVAGIDS 738 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G D++ T + F+V ++T D R K + + Y +A + Sbjct: 739 LKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAINFGVIYGISGF---GLARNLRI 795 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + ++ +M + A+ + + RV Sbjct: 796 PRSEAQGFID-----RYFDRFPGIKEYMNDT-------------------TAFAKANDRV 831 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 L+ + + P+ + + R Sbjct: 832 ETLFGRV-----------------------------------IHTPNINAKGPQAGFAKR 856 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633 + +N +Q + DI+ M+ A ++L VHDE++ Sbjct: 857 AAINAP------------------IQGTAADIIRRAMIRMPDAIKDQPAKMLLQVHDELL 898 Query: 634 CET-PDTDEFNASMLYHLMTSNPSWA--KGLPLKAEG 667 E D + +M + +PL + Sbjct: 899 FEVEKDGVDQLIKTAKDIMENAADPVVKLDVPLIVDA 935 >gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] Length = 963 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 95/591 (16%), Positives = 197/591 (33%), Gaps = 91/591 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALE 62 D ET + +D T D ++ +F + D + + E Sbjct: 395 DTET-TSLDTT---------DAELVGLSFSYLAGEAFYIPVPADRQQAEEIVGYFRAVFE 444 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121 N ++ + N ++ VLK N I +H + +LA P A + Sbjct: 445 NENIEKIGQNIKYDMLVLK---NYGIEVHGKLSDTMLAHYLLEPDKRHGMDILAASYLNY 501 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KRLEP 177 + LI + KG + D P +Y D +T ++ + L Sbjct: 502 EPVSITSLIGK--KGGKQGNMRDVAIPE-------ITQYAGEDADITFQLHSIFSRELPK 552 Query: 178 LS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 ++ E L + ++ + G +D+ ++ +++ + + + E+ G Sbjct: 553 VNAAKLFNEVEMPLTKVLASMENTGVRLDINALKEMSAVLESDLRQTESEIYE-AAGQSF 611 Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF + L T+T T + +LS + A ++ + R Sbjct: 612 NISSPKQLGEVLFEKMKLIEKPKKTKTGQYATGEEILSDLEANHLIARKILDYREL---- 667 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + P R R H +Q + Sbjct: 668 ---------------------------QKLKSTYVDALPTMVSSRTGRIHTSYNQAVAAT 700 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R + +++ AD + IE R++A +G+ + Sbjct: 701 GRLSSTNPNLQNIPIRTPRGREIRKAFVPDSADFQILSADYSQIELRIMAAFSGDASMTE 760 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ TT ++ F V +VT D R K++ + Y A +A G+ Sbjct: 761 AFNQGRDIHATTASKVFQVPLEEVTSDMRRKSKMVNFGIIYGISAF---GLAQRLGIPRG 817 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + +++ + + + + A E ++ T R ++ +SR Sbjct: 818 EASEIIRA------YFEEFPAVKGYMDKVVNDAREREYVETILGR-RRYLPDINSRNQTN 870 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570 + G A K + + +M K+K ++L LV+ Sbjct: 871 RGYAERNAINAPIQGSAADMIKVAMINIHDFMAKEKLKSRMILQVHDELVF 921 >gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW] gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW] Length = 987 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 116/661 (17%), Positives = 194/661 (29%), Gaps = 164/661 (24%) Query: 46 DCVHDPVMPQV---------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 D P P LK LE+ V V N F+ + PI T Sbjct: 445 DLGGTPPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIFARHGIAMAPID---DT 501 Query: 97 LVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 ++++ G AL+ K + R Sbjct: 502 MLISYVLGTGLHGHGMDELALRHLGHTT----------IKYDEVTGTGKSRITFDRVPLD 551 Query: 156 LFGEYCKGDVTVTREIFKRLE----------PLSSKEQELWYLDQTINDRGYCVDVALAH 205 +Y D +T + + L+ + E+ L + + RG VD A+ Sbjct: 552 KARDYAAEDADITLRLHRVLKHDLVRQHMVTLYETVERPLVPVVARMESRGVLVDRAVLR 611 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261 ++ +++ E++ L + ++L LF E L ++ T Sbjct: 612 QMSSDFAQRMLEMEAEIQKLA-PRAFNVGSPKQLGEILFDEMKLPGGSKGKSGAWGTDSG 670 Query: 262 VLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL + A +V + R A + Sbjct: 671 VLEGLAEQGVEIAQKVLDWRQLA-------------------------------KLKSTY 699 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375 Q R R H T ++DP+ I +R +A G Sbjct: 700 TDALAEQIDARTGRVHTSFALAATATGRLSSTDPNLQNIPIRTEEGRKIRRAFVARPGHL 759 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ D + IE R++A MAG +AF G D++ T ++ F V Q+T + R K + Sbjct: 760 LLSVDYSQIELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQMTSEIRRKAKAI 819 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y + G+ F R E PE Sbjct: 820 NFGIIYGISGF---GLGRQLGITPGEAGA----------------FIRQYFERFPE---- 856 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + T E K R+ H V+ L +R + + K Sbjct: 857 ---LQTYMETTKAFARE-HGYVTTL-------------------LGRRCWIQGIREKA-- 891 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 P+ R+ R +N +Q + DI+ M Sbjct: 892 -------PARRAYA------ERQAINAP------------------IQGTAADIIKRAMA 920 Query: 616 NAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-G 667 K ++L VHDE++ E P+ E A+++ +M G+PL AE G Sbjct: 921 RIEPALAAAKLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVMEGAA--GLGVPLVAEAG 978 Query: 668 Y 668 + Sbjct: 979 W 979 >gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening disease-associated, Peptide, 207 aa] Length = 207 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 106/205 (51%), Positives = 128/205 (62%), Gaps = 2/205 (0%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 + LFID ETRSP L K G+ YAE + L A+ +D PV+LWD +P L + L Sbjct: 3 SKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQYL 62 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL+ Sbjct: 63 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPEH 122 Query: 122 --KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K EEGK LIARFCKG YD + NH +AW LF EYCK DV TRE+FK L PL+ Sbjct: 123 LTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPLN 182 Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204 +E+ LW LDQ INDRGY +D+ L Sbjct: 183 PEERTLWLLDQEINDRGYRIDLDLV 207 >gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] Length = 931 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 100/539 (18%), Positives = 178/539 (33%), Gaps = 81/539 (15%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113 LK E ++ + N ++ +L N DI + + ++A P + + Sbjct: 407 LKPFFEAENILKIGQNLKYDLKILA---NYDIEVRGQLFDTMIAHYLLNPDMRHNMDLLA 463 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 EA S + LI + KG+ C L EY D VT ++ Sbjct: 464 EA--YLSYAPVAIETLIGKKGKGQLSMC---------SVPAELQKEYAVEDTDVTLQLKH 512 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 PL K E L + + G VD A L++ ++ + L + Sbjct: 513 TFLPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTAFLSQLSKEINTDLIALQTAIF 572 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFN 278 G + ++L LF + L + T + VLS P V Sbjct: 573 EQA-GESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASQHPIVANVLE 631 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 F + P + PR R H Sbjct: 632 -------------------------------FRALQKLQSTYTDALPREVNPRTGRIHTT 660 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWM 392 Q +T ++ P+ I +R + E L+ AD + IE R++A + Sbjct: 661 FMQAVTATGRLSSNQPNLQNIPIRTPRGSQIRKAFVPRDENYTLLSADYSQIELRIIAAL 720 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + E ++AF G+D++ +T A+ F V VTK+QR+ K + + Y A ++ Sbjct: 721 SEETHMIEAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSA---IGLS 777 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 T L+ + L+ T + + + + EH +G ++ Sbjct: 778 QQTSLSRSQSKELIDTYY--QTYPKLKTYIEQQIFFAREHGYVQTLLGR-----RRYLPD 830 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570 HSR + + G A K V + ++K+K ++L L++ Sbjct: 831 IHSRNQVVRGAAERNAVNAPIQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDELLF 889 >gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b] gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b] Length = 938 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 95/637 (14%), Positives = 174/637 (27%), Gaps = 150/637 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ + + N ++ + + + + A + G+ + Sbjct: 416 LKPMLEDDAILKIGQNMKYDAKIFARH-GIRVAPFDDTMLMSYALNAGI-HGHGMDTLSE 473 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + S + KEL+ T R +Y D +T ++ + Sbjct: 474 RYLSHQPIPIKELLGTGKSAVT----------FDRVPVADAVKYAAEDADITLRLWHVFK 523 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P +E + L + + G VD ++ + +L++E+ L Sbjct: 524 PQLHREKVTTVYETLERPLSPVLAQMERNGIKVDRETLSRMSGKFAQKMAQLEEEIHELA 583 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF E GL +T T VL +V + R Sbjct: 584 -GRKFNVGSPKQLGEILFDEMGLDGGKRGKTGAYATGADVLEDLATEHDLPARVLDWR-- 640 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ P R H Q Sbjct: 641 -----------------------------ALSKLKSTYTDALQDHIDPDTGRVHTSYVQT 671 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 ++DP+ I +R +A G LV D + IE R+LA +A Sbjct: 672 GATTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIDA 731 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G+D++ T + F+V ++T + R K + + Y +A + Sbjct: 732 LRQAFRDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGF---GLARNLRI 788 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A+ F E P +K Sbjct: 789 PRGE----------------AQGFIDRYFERFP--------------GIKTYMD------ 812 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 K + K + + P + R R Sbjct: 813 ------------------KTVDFAKEHGFVQTLFNRK-----IHTPEISAKGPRAGFARR 849 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIV 633 + +N +Q + DI+ M+ ++L VHDE++ Sbjct: 850 AAINAP------------------IQGTAADIIRRAMIRMPAAIEGMPAKMLLQVHDELI 891 Query: 634 CETPDTDEFNASMLYH-LMTSNPSWAK--GLPLKAEG 667 E +M + A +PL + Sbjct: 892 FEVEAGAADALIATARDVMEAAADPAVKIDVPLVVDA 928 >gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] Length = 950 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 85/634 (13%), Positives = 181/634 (28%), Gaps = 136/634 (21%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 +LK LE+ + + N ++ + + + + A +GL + Sbjct: 421 ILKPVLEDESLLKIGQNMKYDWKIFARH-GIRVAPFDDTMLMSYAMFSGL-HGHGMDALS 478 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + KELI + +D+ Y D +T ++ Sbjct: 479 EEYLRHRPIPIKELIGTG----KAQITFDK------VPLDKATAYAAEDAEITYRLWAAF 528 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ L + + G VD + ++ + L++E+++L Sbjct: 529 KPQLHRAQVTTVYETLERPLVPVLAEMEMAGVKVDPTVLARMSNVFAQRMAGLEEEIQAL 588 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF + G+ + +T ++ + + +++ A Sbjct: 589 A-GQSFNVGSPKQLGEILFDKLGVPGGEKGKTG---AYATGADVLEDITTMEDHKQAADL 644 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 +A + L + ++ P R H + Sbjct: 645 AAKV------------------LDWRQIAKLKSTYTDALQTHVNPDTGRVHTSYSIAGAN 686 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++DP+ I +R +A+ G ++V D + IE R+LA +A Sbjct: 687 TGRLASTDPNLQNIPVRSDEGRRIREAFVATPGHRIVSLDYSQIELRILAHVANLPEMKA 746 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T + F V + R K + + Y + Sbjct: 747 AFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINFGVIYGISGFGLARNLRI------ 800 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +A+ F E P R Sbjct: 801 -------------PRSEAQGFIDRYFERFP------------------GIRAYMDETVAF 829 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + + RK + P + R+ + Sbjct: 830 --------AKANGFVQTLFGRK-----------------IHTPEINAKGPGAGFAKRAAI 864 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIVCET 636 N +Q + DI+ M+ ++L VHDE++ E Sbjct: 865 NAP------------------IQGAAADIIRRAMIRMPAAIAHLPAKMLLQVHDELIFEV 906 Query: 637 PDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++ + + +M A +PL + Sbjct: 907 AESAVDPLIATARAVMEGAADPAVRLSVPLVVDA 940 >gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] Length = 1033 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 111/639 (17%), Positives = 196/639 (30%), Gaps = 146/639 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 LK LE+ + + N F +L I + +++ + L A Sbjct: 505 DALKPLLESAGLAKIGFNIKFTAVLLAQH---GITLRNIDDLQLMSYALDAGRGSHGLDA 561 Query: 112 VGEA-LKLSSQKMEE----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + E+ L + + E GK I + EY Sbjct: 562 LSESNLGHTLHALGELTGSGKAKIG-----------------FDQVPIERATEYAGERAD 604 Query: 167 VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 V +++ L+P E+ L + + RG +D ++ L+ Sbjct: 605 VALRLWRVLKPRLVAERMMAVYETLERPLVGVLARMERRGISIDRSVLSRLSADFAQTAA 664 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 +++ E+ L G + ++L LF + GL T+T + + Sbjct: 665 RIEAEIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHE 723 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 F R L + S+ P P+ R H Sbjct: 724 FP--------------------------RKILDWRQVSKLRSTYTDALPNYVHPQTQRVH 757 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 T +++P+ I +R IAS G KLV AD + IE R+L+ Sbjct: 758 TTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIASPGYKLVSADYSQIELRLLSE 817 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A KAF+ G D++ T + F V + + R K + + Y A + Sbjct: 818 VAEVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAF---GL 874 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A+ G+ +K +E +M E + + Sbjct: 875 ANQLGIPREEAGAYIK-----RYFERFPGIRAYMDET-------------------RDFC 910 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + H V L+ ++ P + PS R+ R Sbjct: 911 RAHGYVETLF-------------------GRKCHYPDIKASN---------PSIRAFNER 942 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631 N R G + I +A+ R E + K ++L VHDE Sbjct: 943 AAINARL---------------QGSAADIIRRAMGR---MEDALAEKKLSAQMLLQVHDE 984 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++ E PD + ++ H+M P A +PL+ + Sbjct: 985 LIFEVPDDEVAATLPVVRHVMQDAPFPAVLLNVPLQVDA 1023 >gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] Length = 937 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 98/640 (15%), Positives = 170/640 (26%), Gaps = 155/640 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114 LK LE+ + + N ++ +L PI + + A +G + Sbjct: 414 LKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L I + +DR Y D VT ++K Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVEQAVCYAAEDADVTFRLWKL 519 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +P + E+ L + + G VD ++ + L+ E+ + Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHA 579 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF + GL + T VL +V + Sbjct: 580 LAGG-PFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P R H Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + ++DP+ I +R +A GK LV D + IE R+LA +A Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIAD 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF G D++ T + FNV + R K + + Y + Sbjct: 728 IPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLAR---- 783 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + DA+ F E P Sbjct: 784 ---------------NLRIPRADAQGFIDRYFERFP------------------------ 804 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + NG RR + P + Sbjct: 805 ----GIRGYMDETISFAKANGHVETLFGRR---------------INTPEINAKGPGAGF 845 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630 R+ +N +Q + D++ M+ KA ++L VHD Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKAIRGMPATMLLQVHD 887 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667 E++ E + + +M A +PL E Sbjct: 888 ELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEA 927 >gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] Length = 1020 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 109/630 (17%), Positives = 192/630 (30%), Gaps = 132/630 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115 LK LE+ + HN ++ VL I + + CT+ ++ + + Sbjct: 494 LKGMLEDGGTLKIGHNVKYDAAVLARH---GITVAPYDCTMCMSYALDAGRGGHGMDELS 550 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +K E+ + + +DR Y D VT +++ L Sbjct: 551 IKYLGHTPIAFTEVAGKG----KSQITFDR------VPLEAATAYAAEDADVTLRLWRVL 600 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P E + L + + RG +D A L+ +L+ E+ L Sbjct: 601 KPRLPSEGMTTVYETLERPLIAVLARMEARGISIDRATLARLSSEFAQGAARLEDEISGL 660 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + +++ LF + L T T ++ +A ++ A Sbjct: 661 A-GEKINVGSPKQIGDLLFGKMQLPGATKTPTGAWSTKANVLDELAEAGHELPQKILA-- 717 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + S+ P P R H T Sbjct: 718 ------------------------WRQLSKLRSTYTDALPNYVNPTTHRVHTSYALAATT 753 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ I +R +A G KLV AD + IE R+LA +A + Sbjct: 754 TGRLSSSEPNLQNIPIRTEEGRRIRRAFVAVPGTKLVSADYSQIELRLLAEIAEIPALRQ 813 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T + F V + + R K + + Y A +A+ G+ + Sbjct: 814 AFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF---GLANQLGIPRD 870 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +K + + R + + E ++ T Sbjct: 871 EAGQYIK------RYFERFPGIRAYMDETRAYCREHGYVETLFG---------------- 908 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +R P + PS R+ R N R Sbjct: 909 ---------------------RRCHYPDIAASN---------PSIRAFNERAAINARL-- 936 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 G + I +A+ R EG + ++L VHDE+V E PD + Sbjct: 937 -------------QGTAADIIRRAMIR---MEGALADAGLSARMLLQVHDELVFEVPDAE 980 Query: 641 -EFNASMLYHLMTSNPSWAKGL--PLKAEG 667 E ++ +M + A L PL+ E Sbjct: 981 VEATLPVVRRVMETAARPAVELAVPLQVEA 1010 >gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100] gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris] Length = 927 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 101/592 (17%), Positives = 176/592 (29%), Gaps = 88/592 (14%) Query: 7 DFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F P +L D L L Sbjct: 354 DTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQALA---QLAPLLT 409 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V + + ++ V++ I + + +L + + Sbjct: 410 DPAVRKLGQHGKYDLHVMRRH---GIALAGYADDTLLESFVLNSGS----------ARHD 456 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175 M+ + + K E + + + Y D +T + + L Sbjct: 457 MDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDATRYAAEDADITLRLHQVLGKRLA 516 Query: 176 -EPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 EP E L + + I G CVD A + + Q+ L G Sbjct: 517 AEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 575 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 576 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 623 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L + ++ P P+ R H Q Sbjct: 624 -------------------RVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 664 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 665 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 724 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE+G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 725 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 781 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 782 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 834 Query: 521 WNELHQAFEQTIENGKA--IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +A G A II R V + L++ L LV+ Sbjct: 835 RAGAERAAINAPMQGTAADIIKRAMVSVDGWIADHAQRALMI-LQVHDELVF 885 >gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E] gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E] Length = 965 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 91/565 (16%), Positives = 173/565 (30%), Gaps = 61/565 (10%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----LKEALENTDVTIVAHNSYFE 76 + AE+ LFA W+ V + LK LEN ++ + N ++ Sbjct: 405 VAAQAENAQGDLFAESEQSSE-SRWEPVVGQLNKAECLSQLKPLLENPEIKKIGQNIKYD 463 Query: 77 RTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 T+ N I + +L + A + +++ + Sbjct: 464 LTI---FANNGINMQGVTFDTMLESYVLNSTGRHNMDDLAERYLGHHTIAFEDIAGKGKN 520 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTIND 194 T + + + + + L L E L + I Sbjct: 521 QLTFDQIELKKAAEYAAEDADVTMKLHQTLWREVAQSPELVKLYQEMELPLVSVLSRIER 580 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G +D ++ + T L+ + L G + ++L+ LF + GL + Sbjct: 581 NGVLIDSRALLAQSKEFSQKLTALENKAHELA-GQHFNLASTKQLQEILFDKLGLPVLKK 639 Query: 255 TET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T T + VL + +R Sbjct: 640 TPKGAPSTNEEVLEELAYEHELPKLLVEHR------------------------------ 669 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 G S+ P + R H Q +T +SDP+ I +R Sbjct: 670 -GLSKLKSTYTDKLPQMVNRKTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIR 728 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 IA +G K++ AD + IE R++A ++ ++ AF G+D++ +T A F +A VT Sbjct: 729 QAFIARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVT 788 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 +QR K + L Y + ++ G+ + + Sbjct: 789 AEQRRSAKAINFGLIYGMSSF---GLSRQLGIARGDAQRYMDLYFQRYP------GVQTF 839 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 N E A ++ T R + S + + G A KR Sbjct: 840 MTNIREKAKSQGYVETLFGR-RLYLPDIQSANAMRRKAAERVAINAPMQGTAADIIKRAM 898 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVY 570 + + D ++++++ LV+ Sbjct: 899 IDIDKAITDDPDILMIMQVHDELVF 923 >gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131] gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131] Length = 937 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 98/640 (15%), Positives = 170/640 (26%), Gaps = 155/640 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114 LK LE+ + + N ++ +L PI + + A +G + Sbjct: 414 LKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L I + +DR Y D VT ++K Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVEQAVCYAAEDADVTFRLWKL 519 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +P + E+ L + + G VD ++ + L+ E+ + Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHA 579 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF + GL + T VL +V + Sbjct: 580 LAGG-PFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P R H Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + ++DP+ I +R +A GK LV D + IE R+LA +A Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIAD 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF G D++ T + FNV + R K + + Y + Sbjct: 728 IPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLAR---- 783 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + DA+ F E P Sbjct: 784 ---------------NLRIPRADAQGFIDRYFERFP------------------------ 804 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + NG RR + P + Sbjct: 805 ----GIRGYMDETIAFAKANGHVETLFGRR---------------INTPEINAKGPGAGF 845 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630 R+ +N +Q + D++ M+ KA ++L VHD Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKAIRGMPATMLLQVHD 887 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667 E++ E + + +M A +PL E Sbjct: 888 ELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEA 927 >gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] Length = 937 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 98/640 (15%), Positives = 170/640 (26%), Gaps = 155/640 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114 LK LE+ + + N ++ +L PI + + A +G + Sbjct: 414 LKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L I + +DR Y D VT ++K Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVEQAVCYAAEDADVTFRLWKL 519 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +P + E+ L + + G VD ++ + L+ E+ + Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHA 579 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF + GL + T VL +V + Sbjct: 580 LAGG-PFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P R H Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + ++DP+ I +R +A GK LV D + IE R+LA +A Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIAD 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF G D++ T + FNV + R K + + Y + Sbjct: 728 IPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLAR---- 783 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + DA+ F E P Sbjct: 784 ---------------NLRIPRADAQGFIDRYFERFP------------------------ 804 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + NG RR + P + Sbjct: 805 ----GIRGYMDETIAFAKANGHVETLFGRR---------------INTPEINAKGPGAGF 845 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630 R+ +N +Q + D++ M+ KA ++L VHD Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKAIRGMPATMLLQVHD 887 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667 E++ E + + +M A +PL E Sbjct: 888 ELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEA 927 >gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36] gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36] Length = 932 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 96/640 (15%), Positives = 175/640 (27%), Gaps = 159/640 (24%) Query: 46 DCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 D + + L LE+ + + N ++ + L I + T++L+ Sbjct: 395 DLAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKI---FAQLGINVAPIDDTMLLSY 451 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNK---PNHREAWRLF 157 + L M+ E + L K + Sbjct: 452 AMHA-----------GLHGHGMDTLSE--RYLSHTPIPIKPLLGTGKSAITFDKVPLADA 498 Query: 158 GEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTL 207 +Y D +T +++ +P + E+ L + + G VD + Sbjct: 499 VKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVSVLAAMERSGVKVDRDTLSRM 558 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263 + + L+ E+ L G + ++L LF E GL +T T VL Sbjct: 559 SNAFAQKMAGLEDEIYELA-GRKFNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVL 617 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 +V + R S+ Sbjct: 618 EDLATEHDLPARVLDWRQL-------------------------------SKLKSTYTDA 646 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P R H ++DP+ I +R +A GK LV Sbjct: 647 LQDHINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKALVA 706 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + IE R+LA +A +AF+ G D++ T + F V ++T D R K + Sbjct: 707 LDYSQIELRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFG 766 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + +A+ F E P Sbjct: 767 VIYGISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP-------- 799 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +T N A++ V ++ +K Sbjct: 800 -----------------------------GIRTYMNDTKAFAKEHGFVQTLFGRK----- 825 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + P + R R+ +N +Q + D++ M+ Sbjct: 826 -IHTPEINAKGPRAGFAQRAAINAP------------------IQGTAADVIRRAMIRMP 866 Query: 619 KA----GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654 A ++L VHDE++ E E + + N Sbjct: 867 HAIKDLPATMLLQVHDELLFEVEKGAEDDLIAAARQVMEN 906 >gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] Length = 885 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 96/631 (15%), Positives = 198/631 (31%), Gaps = 143/631 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAV 112 ++E L + D+ + + RT L ++ I + + LA P ++ + Sbjct: 366 VREWLADADMEKAGFDLH--RTELSLAWH-GIALKGISFDIQLAAYLLDPTDSTQSISGL 422 Query: 113 GEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TR 169 L + + +E + + K + + + +A R + ++ Sbjct: 423 CGKYGLPTVQADES--VYGKGAKFKLPEAGVLHGHIASKTDAVRSIAAIQREELEKTGMH 480 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 +++ L EQ L + + +G D ++ L ++ + + ++ +L G+ Sbjct: 481 KLYYDL------EQPLSRVLAGMELQGIRCDASVIEQLGAELESRISDIMTKVYTLA-GM 533 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + +L LF + GL + T+T +KL P Sbjct: 534 EFNINSPRQLGEVLFEKLGLPVIKKTKTGYSTDADVLEKLEP------------------ 575 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + + + L F ++ + P + H Q I Sbjct: 576 -YHEI---------IPSILLFRQLAKLQSTYVEGLLKEIRPNTGKIHTYYRQTIAATGRL 625 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + P+ I +R + SE G ++ AD + IE RVLA ++G++ +AF Sbjct: 626 SSQYPNLQNIPIRLEEGRQIRKAFVPSEPGWFMLAADYSQIELRVLAHISGDEGLKEAFV 685 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T + F V P V + R K + + Y +++ + A Sbjct: 686 QDLDIHTKTASDVFGVRPEDVDANMRRQAKAVNFGIVYGISDF---GLSNNLNITRKEAA 742 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++ Q + + Sbjct: 743 QFIE--------------------------------------------QYFAAFQGVRRY 758 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNT 582 + Q +G +RR LP ++ + R+ +NT Sbjct: 759 MDNIVAQARTDGYVTTLLERRRY---------------LPEIKASNFNIRSFAERTAMNT 803 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET 636 +Q + DI+ M+ + ++L VHDE+V E Sbjct: 804 P------------------IQGTAADIIKLAMVRMDEQLRARGLRSRMLLQVHDELVFEV 845 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 P + E ++ +M S +PLKA+ Sbjct: 846 PADELELMKELVPQVMESAIK--LDVPLKAD 874 >gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] Length = 927 Score = 254 bits (649), Expect = 4e-65, Method: Composition-based stats. Identities = 99/591 (16%), Positives = 177/591 (29%), Gaps = 86/591 (14%) Query: 7 DFETRSPIDLTKC--GICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S L G+ AE + F F P +L D L L Sbjct: 354 DTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQALA---QLAPLLT 409 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + V + + ++ V++ I + + +L + + Sbjct: 410 DPAVRKLGQHGKYDLHVMRRH---GIALAGYADDTLLESFVLNSGS----------ARHD 456 Query: 123 MEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175 M+ + + K E + + + Y D +T + + L Sbjct: 457 MDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDATRYAAEDADITLRLHQVLGKRLA 516 Query: 176 -EPLSSK-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 EP E L + + I G CVD A + + Q+ L G Sbjct: 517 AEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA-GR 575 Query: 230 VSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF E L +T + L + Sbjct: 576 TFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP------------ 623 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L + ++ P P+ R H Q Sbjct: 624 -------------------RVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA 664 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R +A G+KL+ D + IE R++A ++G+ + Sbjct: 665 TGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVG 724 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE+G D++ T A F V+ D+R K + L Y A +A G+ Sbjct: 725 AFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAF---GLARQLGIGRG 781 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R E + A + ++ T R + ++ Sbjct: 782 EAQDYIALYFSRYP------GVRDFMETTRQQARDKGYVETVFGR-RLYLDFINAGSQGQ 834 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVY 570 +A G A KR V + ++ +++L LV+ Sbjct: 835 RAGAERAAINAPMQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDELVF 885 >gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] Length = 937 Score = 254 bits (649), Expect = 4e-65, Method: Composition-based stats. Identities = 98/640 (15%), Positives = 171/640 (26%), Gaps = 155/640 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114 LK LE+ + + N ++ +L PI + + A +G + Sbjct: 414 LKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L I + +DR Y D VT ++K Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVEQAVCYAAEDADVTFRLWKL 519 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +P + E+ L + + G VD ++ + L+ E+ + Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHA 579 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF + GL + T VL +V + Sbjct: 580 LAGG-PFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P R H Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + ++DP+ I +R +A GK LV D + IE R+LA +A Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIAD 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF G D++ T + FNV + R K + + Y + Sbjct: 728 IPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLAR---- 783 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + DA+ F E P Sbjct: 784 ---------------NLRIPRADAQGFIDRYFERFP------------------------ 804 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + NG RR + P + Sbjct: 805 ----GIRGYMDETIAFAKANGHVETLFGRR---------------INTPEINAKGPGAGF 845 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630 R+ +N +Q + D++ M+ KA ++L VHD Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKAIRGMPATMLLQVHD 887 Query: 631 EIVCETPD-TDEFNASMLYHLMTSNPSWA--KGLPLKAEG 667 E++ E + + + +M A +PL E Sbjct: 888 ELLFEVEEKAADALIERVREVMEGAADPAVKLTVPLTVEA 927 >gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1] gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1] Length = 944 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 105/633 (16%), Positives = 193/633 (30%), Gaps = 138/633 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V VA N+ ++ VL I + T++++ + E Sbjct: 418 LKPLLEDPSVLKVAQNAKYDIAVLSRY---GIEVGPIDDTMLISYVLEAGLHNHGMDELS 474 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 KL + +A K + Y D VT +++ L+ Sbjct: 475 KLGLDHEPIAFKSVAGTGKAQKS---------FKYVGLSEATCYAAEDADVTLRLWEHLK 525 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P + E + + + + G VD L+ +L+ E L Sbjct: 526 PRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERLRQLSNEFGQRMAELEAEAHRLA 585 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + +++ LF E GL +T T T +L + ++ + + Sbjct: 586 -GRPFNLGSPKQIGEVLFKEMGLASGRVTATGAFSTDASMLEDLAAQGHELPRILLDWRQ 644 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ + LV A++ + R H Sbjct: 645 LSKLKGTYTDALVAAISE------------------------------QTGRVHTSFSLA 674 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 T +SDP+ + I +R +A GK L+ AD + IE R+LA + Sbjct: 675 STTTGRLSSSDPNLMNIPIRTEEGRKIRRAFVAEPGKVLISADYSQIELRLLAHIGDIPQ 734 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G D++ T + F V + + R K + + Y A +A+ G+ Sbjct: 735 LKRAFREGLDIHAMTASEMFGVPVEGMPSETRRRAKAINFGIIYGISAF---GLANQLGI 791 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + +KT + ++ + Sbjct: 792 PQDEAGAYIKT-----------------------------------------YFERFPGI 810 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + QA R + V ++ GR + V + Sbjct: 811 RAYMDRTKQAA------------RSQGFVHTIF--------------GRKVNIPAVKSKS 844 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + G + + +A+ R G + A ++L VHDE+V E P Sbjct: 845 QAERAFGDRAAINAPIQGSAADVMRRAMIR---MPGALKAEGLTARMLLQVHDELVFEAP 901 Query: 638 DTDEFNASMLYH-LMTSN--PSWAKGLPLKAEG 667 + + + +M P+ A +PL E Sbjct: 902 EAEAEAVIRIAKAVMEKAAEPAVAISVPLVVEA 934 >gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514] gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514] Length = 947 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 102/596 (17%), Positives = 192/596 (32%), Gaps = 89/596 (14%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE---LWDCVHDPVMPQVL 57 + T D ET S + L F + + ++L Sbjct: 373 LKTFCFDTETTS------------LDTKEARLIGLAFAFEKQKGFYVAVPADPEEAREIL 420 Query: 58 KEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +E EN + V HN ++ VLK + +H + +LA S P Sbjct: 421 QEFRAVFENEQIQKVGHNLKYDLAVLKWH---GVGVHGKLFDTMLAHSLIEPE------- 470 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN---HREAWRLFGEYCKGDVTVTREI 171 M+ E+ + + + D EY D VT ++ Sbjct: 471 ----MRHGMDYMSEVYLGYSPISITKLIGDEKSKQLNMADVPVAKVAEYAAEDADVTWQL 526 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +++LEPL E L + + G VD + + + E +Q Sbjct: 527 WEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEFSTQLSKEMANHEQT 586 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + L G + +L LF + L + + + T ++N+ Sbjct: 587 IYRLA-GQEFNLNSPRQLGEILFDK--LKISENAKKTKTGQYATNE-------------- 629 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 TL++ ++ L + GA++ P R H +Q Sbjct: 630 ----------QTLMDLAADHEIVQRLLDYRGATKLKSTYADALPGTIWKPTGRVHTTFNQ 679 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 +T + +P+ I +R + E L+ AD + IE R++A ++ E Sbjct: 680 AVTTTGRLNSQNPNLQNIPIRTEQGKEIRKAFVPRNEDYVLLSADYSQIELRIIAALSHE 739 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 Q L+ F D++ T AR + V QVT + R K++ + Y A +A Sbjct: 740 QGMLEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYGISAF---GLAQRL 796 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + A +++ A ++ + R + +H + G ++ R S Sbjct: 797 RIPRKEAATIIEQYFA--QYPGIAKYMRDTIDFAKQHGYVETVTGR-----RRYMRDIRS 849 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570 + + + G A K + + + K K ++L LV+ Sbjct: 850 ANAAVRGGAERNAINAPIQGTAADMIKIAMINIHGELTKRKLKSRMLLQVHDELVF 905 >gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno] gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno] Length = 928 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 102/642 (15%), Positives = 200/642 (31%), Gaps = 157/642 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 + + EN + V N ++ VL+ N + + + ++A P Sbjct: 403 EQFRPFFENEQIAKVGQNLKYDLKVLQ---NYGVEVQGALFDTMIAHYLLNPDMRHNMDI 459 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + LI + + R P EY D VT ++ Sbjct: 460 LSETYLNYTPIAIESLIGKGKAQRS-----MRTVPIDE-----VKEYAVEDADVTWQLKN 509 Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + + E L + + G +DV ++ +D + +L+ + Sbjct: 510 VFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLETAIA 569 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 G + ++L LF + + T+T T + VL+ + Sbjct: 570 QQA-GETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADILE 628 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + P + R H Sbjct: 629 WRQ-------------------------------VQKLKSTYVDALPLEVNKSTGRVHTT 657 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392 Q + +++P+ I VR IA L+ AD + IE R++A + Sbjct: 658 YMQTVAATGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAAL 717 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + E +++F GED++ T A+ FNV +VT++QR+ K + + Y A ++ Sbjct: 718 SEEHNMIESFLHGEDIHRATAAKVFNVPLEEVTREQRSHAKTVNFGIIYGVSAF---GLS 774 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + T L+ + + + + Sbjct: 775 AQTDLSRS-----------------------------------------ESKELIDTYYA 793 Query: 513 KHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + L N +++ E E+G I +RR +P ++ Sbjct: 794 TYPN---LRNYINRQIEFAREHGYVETILGRRRYLPDIHSHNQ---------------VV 835 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625 G R+ +N +Q + DI+ M+ K ++ Sbjct: 836 RGGAERNAVNAP------------------IQGSAADIIKIAMIRIHNQLQAQKLQTRML 877 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 L VHDE+V + P T+ E ++ M + + A +PL A+ Sbjct: 878 LQVHDELVFDVPKTELELVKPLIKDAMENAFTLA--VPLVAD 917 >gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5] Length = 958 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 88/548 (16%), Positives = 165/548 (30%), Gaps = 82/548 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKEALENTDVTIVA 70 D G + +P E W ++++ EN + + Sbjct: 392 DTETTGFDI----FNDRIVGMSLAVNPFEAWYIPFKEENTAEYTEIVRPLFENDRIAKIG 447 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N F+ VL+ L+I ++ T++L S A K + K E + LI Sbjct: 448 QNIKFDLMVLRQ-LGLEIRGRKY-DTMILHYLLDPESRHNMNALAEKYLNYKPIEIETLI 505 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181 + K T + + EY D VT + L P + Sbjct: 506 GKGSKQLTMDLVNV----------ERVKEYAAEDADVTLRLKHALYPQIEELGLQHLYFE 555 Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E+ + + I G +D + + +L+ + + +L Sbjct: 556 IEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICEEAGESQLNINSARQLG 615 Query: 241 TWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF + + +T+T T + L S + Sbjct: 616 EVLFGKMRIAEKPKMTKTKQFCTDEDYLQSFAHKHRIVDLILE----------------- 658 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + G + P R R H +Q +T +++P+ Sbjct: 659 --------------YRGVKKLLSTYVEALPQLVNRRTGRIHTSFNQAVTATGRLSSTNPN 704 Query: 356 PLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +R I E L+ AD + +E R++A ++G++ + AF GED++ Sbjct: 705 LQNIPVREEMGRRIRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLIAAFAHGEDIH 764 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A+ FN +VT ++R K + Y A + + ++ Sbjct: 765 AATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQ---RLEIPRKEAKEIIDGY 821 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + +N A E+ F+ T R ++ S + + Sbjct: 822 FASYPK------VQEYMDNVVAKAKEEGFVSTIFGR-RRYLNDIASHNAIARGLAERNAV 874 Query: 530 QTIENGKA 537 G A Sbjct: 875 NAPIQGSA 882 >gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916] gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916] Length = 1007 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 109/645 (16%), Positives = 200/645 (31%), Gaps = 144/645 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 Q L L ++D N+ ++R +L + + + +LA L+ Sbjct: 463 QALAPWLASSDHPKALQNAKYDRLIL---LRHGLTLGGVVMDTLLADY------LRDAAA 513 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----RLFGEYCKGDVTVTR 169 L + L + K ++ YC DV +TR Sbjct: 514 KHGLDLMAQRD------YGITPTLFTDLVGKAKDGKASSFAAVPVDQAALYCAMDVHLTR 567 Query: 170 EIF-----------KRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + ++L L + E L + + G +DV L+ + + Sbjct: 568 RLALDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQELSAELGATLER 627 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTET---TCQRVLSSNKKLTPQ 272 L+ E + + G + ++L LF GL+ + T+T T VL + P Sbjct: 628 LETEAQDV-VGTSFNLASPKQLGELLFDTLGLNRKKSRRTKTGWSTDATVLEKLEGDHPV 686 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + +R+ S+ P Sbjct: 687 VPLLLEHRVL-------------------------------SKLKSTYVEALPQLVEAET 715 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H + +Q +T +S+P+ I S +R + EG +L+ AD + IE R Sbjct: 716 GRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQEGWQLLSADYSQIELR 775 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +L ++GE+ +A+ G+D++ T + +V+ D+R +GK + + Y GA Sbjct: 776 ILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIYGMGA-- 831 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 Q+ A TG++ + + + F E A+ ++ T R + Sbjct: 832 -QRFARETGVSQVVAKDFL--AKYKQRYPKVFAFL----ELQERLALSRGYVETILGRRR 884 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 D+N L +L Sbjct: 885 P------------------------------------------FHFDRNGLGRLLGKD-- 900 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------ 621 ++ + + Q R +Q S DI+ M+ A Sbjct: 901 --PLEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQTALQQQGLP 952 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V E L N + +PL E Sbjct: 953 AQLLLQVHDELVLEVEPAALDTVRQLVVQTMEN-AMTLSVPLVVE 996 >gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] Length = 949 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 110/686 (16%), Positives = 204/686 (29%), Gaps = 172/686 (25%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQVLKEA 60 D ET S + + F P + + D + + Sbjct: 377 DTETTS------------LDTFEAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAPL 424 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-L 116 LE+ + N ++ +VL N I + + ++A P + + E L Sbjct: 425 LEDASIEKTGQNMKYDISVLG---NYGIGVGGRMFDTMIAHYLLQPELRHNMDYMAEVFL 481 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--- 173 + E + G+ E + +Y D +T ++ Sbjct: 482 GYRTIHFGELFDDDKTKKSGKPIEDIRK-------VELGKLKDYACEDADITLQLKNIFG 534 Query: 174 ------RLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L+ L E L + + G +D + + + E K+++++ + Sbjct: 535 QKLCESSLKNLFFDIEMPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERDILA-Y 593 Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 L + +++ LF + T+T T + L + P + +R Sbjct: 594 VDLPINISSPKQIGELLFERLRIVEKPTKTKTGQYRTDEETLQKLRNRHPIIKLILEHR- 652 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G + P P+ ++ H +Q Sbjct: 653 ------------------------------GLKKLLSTYVEALPKLINPKTNKIHTSFNQ 682 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + +S+P+ I +R IA G L+ AD + +E R++A ++G++ Sbjct: 683 TVVSTGRLSSSNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDR 742 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L AF +G+D++ T AR F V +VT D R K + Y A + Sbjct: 743 NMLSAFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYGISAFGLSE---RLD 799 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + A L+ E + D + + Sbjct: 800 IPRKEAAALID--GYFESFPDVKRY----------------------------------- 822 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + QA E+ NG GR L D+ + Sbjct: 823 -------MEQAIEEARRNGSVQTLF-----------------------GRKLYLPDINSQ 852 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 N R +Q + DI+ M+ +A ++L VHD Sbjct: 853 ----NAGVRGFAERIA-----INAPIQGTAADIIKIAMIKVDEAIRHHNYRSQMMLQVHD 903 Query: 631 EIVCETP--DTDEFNASMLYHLMTSN 654 E+V P + DEF S + H M + Sbjct: 904 ELVFNVPTEEVDEFRQS-VKHAMETA 928 >gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 917 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 113/703 (16%), Positives = 206/703 (29%), Gaps = 172/703 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEA 60 L +D ET SP + + F ++ D + ++E Sbjct: 340 RVLSVDTETTSPNPAMAELVGISFSNQEKTGFYVSVKNNA----SLFQDKSLNLDEVREH 395 Query: 61 L---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L ++ V V N ++ VL+ N ++ +LA P Sbjct: 396 LGPVLSSQVPKVGQNIKYDLIVLE---NHGFVLNNIQFDTMLASYVLRPEG--------- 443 Query: 118 LSSQKMEEGKELIARFCKGETHEC----LYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172 M+ +L F T + K + EY D VT ++ Sbjct: 444 -RRHNMD---DLAKEFLNYNTITYEDLVGTGKKKKELTDIDPEQVAEYAAEDADVTFRLY 499 Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L E L + + G +DV L + D E L+ E+ Sbjct: 500 QIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHLESEI 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279 G + ++L+ LF + L + T+T T VL P ++ Sbjct: 560 HRQAGG-PFNIASTKELQKILFDDLKLRIVKKTQTGFSTDHEVLEELAGEHPIIEKLL-- 616 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ P P+ R H Sbjct: 617 -----------------------------DYRKYTKLKSTYVDALPKMVNPKTGRIHTSY 647 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMA 393 +Q I ++DP+ I +R +++ D + IE R++A ++ Sbjct: 648 NQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHIS 707 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L+A+ G D++ T A + V VT + R KV+ ++ Y + Sbjct: 708 KDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTPYGLSRNLR 767 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++A++F +P Sbjct: 768 I-------------------PRDEAKSFIERYMTQYP----------------------- 785 Query: 514 HSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + E +NG + +RR V + Sbjct: 786 -----GVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKS---------------AK 825 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY--DIVL 626 R +N+ +Q S D++ M+ + K Y ++L Sbjct: 826 EAAKRIAINSP------------------IQGTSADMIKIAMIKIHEDIEKKHYKSRMLL 867 Query: 627 TVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E + D+F AS + M + S LP+ EG Sbjct: 868 QVHDELVFEVHKKEKDDFKAS-MKKHMETAMS--LDLPIVVEG 907 >gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] Length = 921 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 90/538 (16%), Positives = 172/538 (31%), Gaps = 76/538 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 ++L+ E DV IV N ++ TVL + + + +L+ P A Sbjct: 396 ELLRPFWEKADVLIVGQNLKYDLTVLASY---GVKPKGRLFDTMLSHYVVQPELAHNMDY 452 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + + ++LI + RN + +F EY D VT + Sbjct: 453 LASVYLNYRPIPIEQLIG-------PKGRGQRNMGDLDPK-DVF-EYACEDADVTLRLMA 503 Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 LE E L + + G C+D ++ KL+ E+ Sbjct: 504 PLEKAMRENGVEQIFYDIEMPLMPVLARMERNGVCLDTNALQEISSEFTARMVKLEAEIY 563 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 L G +++ LF E + + +T + VL ++ Sbjct: 564 QLA-GHPFMITSPKQVGEVLFGELKIDEKAKKTKSGQYSTSEEVLVRLSHKHEIVGKILA 622 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 +R G + P P+ H Sbjct: 623 HR-------------------------------GLKKLLSTYVEALPKLVNPQTGHLHTT 651 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q +T +S+P+ I +R I G AD + IE R++A ++ Sbjct: 652 FNQAVTSTGRLSSSNPNLQNIPVRGEDGREIRKAFIPEAGDVFFSADYSQIELRIMAHLS 711 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + ++AF+ GED++ T AR F ++V++D+R K + Y A +A Sbjct: 712 KDPHLIEAFKKGEDIHAATAARIFKKDLSEVSRDERRKAKTANFGIIYGISAF---GLAE 768 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ L+ + + ++ E A +I TA R ++ Sbjct: 769 RMDVSRTEARELIDN------YFSTYPKVKEYMDSSIEKARRRGYIETAFGR-RQYLADI 821 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570 +S + + + G A K + + + + ++L L + Sbjct: 822 NSHNAVVRGYAERVAVNAPIQGTAADIIKLAMIRIDQRLRAEGLKTKMILQVHDELNF 879 >gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 908 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 102/675 (15%), Positives = 194/675 (28%), Gaps = 161/675 (23%) Query: 15 DLTKCGIC----KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70 D+ G+ Y + + P+ W L + D Sbjct: 361 DIAGLGLYDGNKGYFLAFETLQ---SVNAEPIRQW---------------LSDADKEKWI 402 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKE 128 + + + L + + ++LA P S L G A K S + ++ Sbjct: 403 FDKHRAQLALS-WKGIKL--RGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQ 459 Query: 129 LIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQEL 185 + + K E L N E K + +E++ L E L Sbjct: 460 VFGKGAKFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQELYYEL------EHPL 513 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G VD L + + + + G+ + ++L LF Sbjct: 514 AGVLAEMELAGIKVDKESLKQLGTEISDQLKTIMDRIYEQA-GMTFNINSPKQLGEVLFE 572 Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + L ++ T+T +KL P + + Sbjct: 573 KLQLPVQKKTKTGYSTDAEVLEKLAP----------------------YHDIVGD----- 605 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 L + ++ + P + H Q I + P+ I Sbjct: 606 -ILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQYPNLQNIPIRLEE 664 Query: 361 SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R + S G ++ AD + IE RVLA ++G++ +AF D++ T F V Sbjct: 665 GRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGV 724 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + A+V + R K + + Y + G+ + + E++ Sbjct: 725 SEAEVDANMRRSAKAVNFGIVYGISDYGLSQ---NLGITRKEASRFI------EQYFSVF 775 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 R ++ A ++ ++ Sbjct: 776 RGVRNYMDSIIREAKTQGYV------------------------------------TTLL 799 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+R LP + Y R+ +NT Sbjct: 800 QRRRY-----------------LPEINASNYNLRSFAERTAMNTP--------------- 827 Query: 599 ENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651 +Q + DI+ M+ K ++L VHDE++ E P+ + L +M Sbjct: 828 ---IQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVM 884 Query: 652 TSNPSWAKGLPLKAE 666 + A +PLK E Sbjct: 885 EQ--ALALDVPLKVE 897 >gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] Length = 943 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 91/555 (16%), Positives = 161/555 (29%), Gaps = 80/555 (14%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 +L L + V + N+ F+ VL + +L Sbjct: 419 ILGPLLADASVLKIFQNAKFDLLVLTRAGAPQPAP---VDDTMLISYAQFAGRHG----- 470 Query: 116 LKLSSQKMEEGKELIARFCK-GETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFK 173 Q M+E L RN+ P R Y D VT ++ Sbjct: 471 -----QGMDELSRLYLGHTPIPYDEVTGTGRNRVPFARVDVARATAYAAEDADVTLRLWL 525 Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E+ L + + G +DV ++ +++ E++ Sbjct: 526 SLRPTLRIHHALALYEELERPLVAVLADMERAGIAIDVVELRRMSADFATRMAQMEAEIQ 585 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278 +L G + ++L LF E GL ++ T VL ++ Sbjct: 586 ALA-GRSFNVGSPKQLGEILFDEMGLPGGKRMKSGAWGTDSSVLQDLADQGHDLPGRILA 644 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + Q P +R H Sbjct: 645 WRQLA-------------------------------KLKSTYADALVKQADPDTARVHTS 673 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 IT +++P+ I +R +A+ G L+ AD + IE R+LA +A Sbjct: 674 FQMAITSTGRLSSNEPNLQNIPIRTEEGGRIRRAFVAAPGHVLLSADYSQIELRLLAHVA 733 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +AF G+D++ T + F + + R K + + Y A + Sbjct: 734 DIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAINFGIIYGISAF---GLGR 790 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW-RQ 512 G+ + A R E + A + ++ T R + W Sbjct: 791 QLGIPPGEARAYIDAYFARYP------GIRAYMETVKQEAKDQGYVTTPFGR--RCWVPG 842 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYR 571 R + + G A KR V L + + L+L L++ Sbjct: 843 IADRSAVRRAYAERQAINAPLQGGAADIIKRAMVRLPHALASAGLDGRLLLQVHDELLFE 902 Query: 572 DVGNNRSYLNTTTRQ 586 + L+ +Q Sbjct: 903 VRAGQQDALSALVKQ 917 >gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG] gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG] Length = 897 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 87/513 (16%), Positives = 162/513 (31%), Gaps = 77/513 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113 LK ++ VAHN F+ VL ++ + T+++A Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVD---DTMIMAYVLKSSGKHDMDS 429 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LS + + G E IA + + + + +Y D +T +F Sbjct: 430 ----LSKEHL--GIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFN 479 Query: 174 RLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L +++ L+ L + G +D A + ++ +L+ + Sbjct: 480 YFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKC 539 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +L G +L+ LF + GL T T + VL + A + Sbjct: 540 YNLA-GQEFKLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMK 598 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + S+ P L R H Sbjct: 599 -------------------------------YRHLSKLKNTYTDKLPKM-LDANGRVHTS 626 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R IA G +V AD + IE R++A ++ Sbjct: 627 YNQTGTVTGRLSSSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLS 686 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ LKAF D++ T A ++ +V+ +QR K + L Y A +A Sbjct: 687 KDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAF---GLAR 743 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + + + E A ++ ++ T R + + Sbjct: 744 QLEIPRAEAQEYIDIYFNRYP------SVKEYMTTAKEFAKQNGYVETILGR-RLYLPEI 796 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +S+ N +A G A K+ + Sbjct: 797 NSKNVMQRNAAERAAINAPMQGTAADIIKKAMI 829 >gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580] gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580] Length = 951 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 103/592 (17%), Positives = 188/592 (31%), Gaps = 88/592 (14%) Query: 18 KCGICKY----AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73 K G Y A + + P + + L N ++T+V HN Sbjct: 399 KAGTGIYVPLKAPAPEL-------GEQPFAVMPLAAAKKL---LARLWNNKELTLVLHNG 448 Query: 74 YFERTVLKA---CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 F+ VL+ + + L + L L+ + EA L Q ++ K+++ Sbjct: 449 KFDYQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSFGLENLTEAQ-LGLQGLDY-KDVV 506 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--------- 181 + C + Y D T +++ +P + Sbjct: 507 PKGC-------------TFAAVSLPQATAYAAEDADFTLQLYHVYKPALEQANLTTLFET 553 Query: 182 -EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L L + +G + ++ + + + E+ L G + ++L+ Sbjct: 554 LEMPLMPLLADMEAQGIFLKKEELAAFSEELAGTLARDEAEIYKL-VGHPFNIASPKQLQ 612 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 LF E L T+T +S ++L Sbjct: 613 EVLFTERKLPTGKKTKTGYSTDISVLEELAAIDELPAK---------------------- 650 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 L + +++ P R H Q T + DP+ I Sbjct: 651 ------ILDYRASAKLKSGYADALPLLADA-NGRIHTSFIQTGTATGRLSSRDPNLQNIP 703 Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R A++G KL+ AD A IE +LA + ++ +KAF G D++ T A Sbjct: 704 IRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAFRQGTDVHAATAAL 763 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 FNV V D R I KV+ + Y A ++A+ ++ A + + Sbjct: 764 IFNVPVENVVPDMRRIAKVINFGVMYGMSAF---RLANQLRISRTEAADFIT------RY 814 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + E E A E F+ T R ++ R +SR + T G Sbjct: 815 FTTYSGVAAFMETLKESAAEKGFVETLMGR-RRYIRAINSRNQTQRAAAERIAINTPIQG 873 Query: 536 KAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 A K + + +K+ + L+L L+ + + +Q Sbjct: 874 SAADIVKTAMLHVDRALKRQHLSAHLLLQVHDELILEAPDSEVDSVKALLKQ 925 >gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010] Length = 884 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 102/675 (15%), Positives = 194/675 (28%), Gaps = 161/675 (23%) Query: 15 DLTKCGIC----KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70 D+ G+ Y + + P+ W L + D Sbjct: 337 DIAGLGLYDGNKGYFLAFETLQ---SVNAEPIRQW---------------LSDADKEKWI 378 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKE 128 + + + L + + ++LA P S L G A K S + ++ Sbjct: 379 FDKHRAQLALS-WKGIKL--RGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQ 435 Query: 129 LIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQEL 185 + + K E L N E K + +E++ L E L Sbjct: 436 VFGKGAKFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQELYYEL------EHPL 489 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G VD L + + + + G+ + ++L LF Sbjct: 490 AGVLAEMELAGIKVDKESLKQLGTEISDQLKTIMDRIYEQA-GMTFNINSPKQLGEVLFE 548 Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + L ++ T+T +KL P + + Sbjct: 549 KLQLPVQKKTKTGYSTDAEVLEKLAP----------------------YHDIVGD----- 581 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 L + ++ + P + H Q I + P+ I Sbjct: 582 -ILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQYPNLQNIPIRLEE 640 Query: 361 SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R + S G ++ AD + IE RVLA ++G++ +AF D++ T F V Sbjct: 641 GRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGV 700 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + A+V + R K + + Y + G+ + + E++ Sbjct: 701 SEAEVDANMRRSAKAVNFGIVYGISDYGLSQ---NLGITRKEASRFI------EQYFSVF 751 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 R ++ A ++ ++ Sbjct: 752 RGVRNYMDSIIREAKTQGYV------------------------------------TTLL 775 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+R LP + Y R+ +NT Sbjct: 776 QRRRY-----------------LPEINASNYNLRSFAERTAMNTP--------------- 803 Query: 599 ENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651 +Q + DI+ M+ K ++L VHDE++ E P+ + L +M Sbjct: 804 ---IQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVM 860 Query: 652 TSNPSWAKGLPLKAE 666 + A +PLK E Sbjct: 861 EQ--ALALDVPLKVE 873 >gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae bacterium] Length = 894 Score = 253 bits (646), Expect = 8e-65, Method: Composition-based stats. Identities = 101/619 (16%), Positives = 182/619 (29%), Gaps = 156/619 (25%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQ 121 + V N ++ VLK + + + +LA PS A Sbjct: 381 PKLKKVGQNIKYDLIVLK---SEGVNLVGVAFDTMLASYILNPSGRRHNMNDMARDYLGY 437 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-- 179 + KE++ K E +D+ L EY D +T +++ L PL Sbjct: 438 TTTKYKEVVGTASK----EIGFDK------VDIELATEYAAEDADITWRLYENLSPLLQG 487 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L + + G +D + L+Q++ + +E+ SL G + Sbjct: 488 DDFKLLQELELPLIEVLAEMELHGMKLDKSHLQKLSQLIQQKLEDQQKEIYSLA-GEEFN 546 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+ VL V R Sbjct: 547 INSPKQLSVILFEKLELPVIKKTKNGYSTDVSVLEQLAAEHELPDVVLTYRQL------- 599 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + R H +Q + Sbjct: 600 ------------------------VKLKSTYADALQEDIFNNTGRVHTSFNQTVAATGRL 635 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +S+P+ I +R +A L+ AD + +E RVLA ++ ++ + AF+ Sbjct: 636 SSSNPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADYSQVELRVLAHLSEDEALVDAFQM 695 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GED++ T F P ++ + R + K + + GL+ + Sbjct: 696 GEDIHTRTACEIFGTTPERLDAEARRMAKAVNFGIV--------------YGLSAFGLSK 741 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 +K P+ A KK Q + ++ + Sbjct: 742 QLKIY--------------------PKDA-------------KKFIDQYFALYKKVKVYM 768 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTT 583 + Q E G + RR LP +S R +N+ Sbjct: 769 VETVAQAKEVGYTLTLMNRRRY---------------LPDLKSQNRQVRESAERIAINSP 813 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP 637 VQ + D++ M+ K ++L VHDE+V E P Sbjct: 814 ------------------VQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHDELVFECP 855 Query: 638 DTDE-----FNASMLYHLM 651 + +E + +M Sbjct: 856 EDEEQEMRALVTKEMEEVM 874 >gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] Length = 930 Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 96/564 (17%), Positives = 176/564 (31%), Gaps = 79/564 (14%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 W + L+ + +T + HN F+ +L A P+ +LA + Sbjct: 394 WVPASSEAL-DALRPLFADNSITKIGHNLKFDLAILAAQ---SCPVDGPCYDTMLAHALI 449 Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 P L + E EL+ KG + +Y Sbjct: 450 EPEQRHNLDTLAE--DYLRYSTIRFSELMPDAKKGSP--------LDYSSVDPQALADYA 499 Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++++ +P + E L + + G + +++ Sbjct: 500 TEDADVTLQLWECFKPKLEESGQASIFYEIETPLLPVLVAMESEGIRLCTETLEETGRVL 559 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSN 266 + + L + + G + ++L LF E L T+T T ++VLSS Sbjct: 560 EGQIATLKDAVYA-AAGREFNLNSPKQLGEVLFNELKLVDKPKKTKTGQFATNEQVLSSL 618 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 P + R S+ P Sbjct: 619 APKHPIVADLLEYRQL-------------------------------SKLKSTYIDALPN 647 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H Q+ T ++DP+ I +R + EG L+ AD Sbjct: 648 AVDPVSGRVHTHYGQVQTATGRLSSNDPNLQNIPVRSAQGREIRKAFVPREGWTLLAADY 707 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA + ++ L AF G D++ T A+ F V V++DQR+ K++ + Y Sbjct: 708 SQIELRILAALTADEGLLTAFREGRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPY 767 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 A + T ++ +++ A + E A ++ T Sbjct: 768 GISAFGLAQRLGT--VSRTEAQNIIDNYFAQFP------GIPGYMQAQQESARAKGYVAT 819 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-IL 560 C R ++ R +S + + G A K + + + D + Sbjct: 820 VCGR-RRYLRDINSGNGTIRAAAERNAINMPIQGTAADMIKLAMIRVHHAIIDAGLKSRM 878 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTT 584 +L L++ S L Sbjct: 879 LLQVHDELIFDLAPGEESALRQLV 902 >gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] Length = 909 Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 121/692 (17%), Positives = 201/692 (29%), Gaps = 167/692 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL---------KEALENT 64 D + Y ++ A HD P P+ L + LE++ Sbjct: 336 DTETTSLD-YM-QAEIVGVALAVATDRAAYIPLAHDYPGAPEQLDRDLVLTRLRPLLEDS 393 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSA-LKAVGEALKLSSQK 122 V N ++ VL N I + +++ + + ALK +K Sbjct: 394 QRAKVGQNLKYDANVLA---NYGIALRGIAHDSMLESYVLDATGSRHDMDTLALKYLGEK 450 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 +E+ + K T A Y D VT ++ + L P E Sbjct: 451 TTHFEEVAGKGAKQITFN----------AVAIEQAAPYAAEDAAVTLKLHQTLWPKLESE 500 Query: 183 -----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L + I G VD L + + L+Q L G Sbjct: 501 AYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELGERLAILEQSAHDLA-GQAF 559 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + L + T T + VL+ P + R Sbjct: 560 NLGSPKQLGEILFQKLELPVLKKTPKGAPSTAEDVLAELALDYPLPAVLMEYRSL----- 614 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 S+ P P R H Q +T Sbjct: 615 --------------------------SKLRSTYTDRLPDMIDPGTGRVHTSYHQAVTATG 648 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +SDP+ I +R A EG+ +V AD + IE R++A ++ ++ L AF Sbjct: 649 RLSSSDPNLQNIPIRTAEGRRIRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLLGAF 708 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 D++ T A F V V+ DQR K + L Y A +A L Sbjct: 709 GANLDVHSATAAEVFGVPLEDVSSDQRREAKAINFGLIYGMSAF---GLAKQLRLGR--- 762 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 +A+ + E +P + D T + V L+ Sbjct: 763 -------------HEAQAYIDRYFERYP--GVADYMTQT------RELAHSQGYVETLF- 800 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +R +P + + + R + R+ +N Sbjct: 801 ------------------GRRLYLPEINARNKQ---------------RQMAAERTAINA 827 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCET 636 Q + DI+ M+ + +++ VHDE+V E Sbjct: 828 PM------------------QGTAADIIKLAMIAVDEWLSKTDIDALMIMQVHDELVFEV 869 Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 DT+ + + LM S +PL E Sbjct: 870 ADTEVATLTSAIPDLMADVAS--LDVPLLVEA 899 >gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] Length = 917 Score = 253 bits (645), Expect = 9e-65, Method: Composition-based stats. Identities = 113/703 (16%), Positives = 205/703 (29%), Gaps = 172/703 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEA 60 L +D ET SP + + F ++ D + ++E Sbjct: 340 RVLSVDTETTSPNPAMAELVGISFSNQEKTGFYVSVKNNA----SLFQDKSLNLDEVREH 395 Query: 61 L---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 L ++ V V N ++ VL+ N ++ +LA P Sbjct: 396 LGPVLSSQVPKVGQNIKYDLIVLE---NHGFVLNNIQFDTMLASYVLRPEG--------- 443 Query: 118 LSSQKMEEGKELIARFCKGETHEC----LYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172 M+ +L F T + K + EY D VT ++ Sbjct: 444 -RRHNMD---DLAKEFLNYNTITYEDLVGTGKKKKELTDIDPEQVAEYAAEDADVTFRLY 499 Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L E L + + G +DV L + D E L+ E+ Sbjct: 500 QIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHLESEI 559 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279 G + ++L+ LF L + T+T T VL P ++ Sbjct: 560 HRQAGG-PFNIASTKELQKILFDNLKLRIVKKTQTGFSTDHEVLEELVGEHPIIEKLL-- 616 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ P P+ R H Sbjct: 617 -----------------------------DYRKYTKLKSTYVDALPKMVNPKTGRIHTSY 647 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMA 393 +Q I ++DP+ I +R +++ D + IE R++A ++ Sbjct: 648 NQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHIS 707 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L+A+ G D++ T A + V VT + R KV+ ++ Y + Sbjct: 708 KDPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTPYGLSRNLR 767 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++A++F +P Sbjct: 768 I-------------------PRDEAKSFIERYMTQYP----------------------- 785 Query: 514 HSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + E +NG + +RR V + Sbjct: 786 -----GVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKS---------------AK 825 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY--DIVL 626 R +N+ +Q S D++ M+ + K Y ++L Sbjct: 826 EAAKRIAINSP------------------IQGTSADMIKIAMIKIHEDIEKKHYKSRMLL 867 Query: 627 TVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 VHDE+V E + D+F AS + M + S LP+ EG Sbjct: 868 QVHDELVFEVHKKEKDDFKAS-MKKHMETAMS--LDLPIVVEG 907 >gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei] Length = 615 Score = 253 bits (645), Expect = 9e-65, Method: Composition-based stats. Identities = 91/561 (16%), Positives = 165/561 (29%), Gaps = 94/561 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----- 60 D ET S + ++ +F + H P MP L Sbjct: 43 DTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 92 Query: 61 ----LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LE+ + + ++ VL I TL+ + AL Sbjct: 93 LTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLAL 150 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + K + +++ + + EY D +T ++ L Sbjct: 151 RHLGVKTIKYEDVAGQGAQQIG----------FDEVPLAQAFEYAAEDADITLQLHHALY 200 Query: 177 PLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P ++E L + + + G +D + + L+QE +L Sbjct: 201 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 260 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ F L + +T + VL + P + +R Sbjct: 261 AGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR- 318 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 319 ------------------------------GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQ 348 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R +A G K+V AD + IE R++ ++ ++ Sbjct: 349 AVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMLHISEDE 408 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF GED++ T A F V P +VT DQR I KV+ L Y + +AS G Sbjct: 409 SLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSF---GLASNLG 465 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + + + + E + G + + Sbjct: 466 ITRDAAKLYID--RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRL-----WLPEINGG 518 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 519 NGPRRQAAERAAINAPMQGTA 539 >gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] Length = 932 Score = 253 bits (645), Expect = 9e-65, Method: Composition-based stats. Identities = 95/644 (14%), Positives = 176/644 (27%), Gaps = 160/644 (24%) Query: 46 DCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 D + + L LE+ + + N ++ + L I + T++L+ Sbjct: 395 DLAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKI---FAQLGINVAPIDDTMLLSY 451 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFC-KGETHECLYDRNK---PNHREAWRLF 157 + L M+ E + L K + Sbjct: 452 AMHA-----------GLHGHGMDTLSE--RYLSHTPIPIKPLLGTGKSAITFDKVPLADA 498 Query: 158 GEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTL 207 +Y D +T +++ +P + E+ L + + G VD + Sbjct: 499 VKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVPVLAAMERSGVKVDRDTLSRM 558 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263 + + L+ ++ L G + ++L LF E GL +T T VL Sbjct: 559 SNAFAQKMAGLEDDIYELA-GRKFNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVL 617 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 +V + R S+ Sbjct: 618 EDLATEHDLPARVLDWRQL-------------------------------SKLKSTYTDA 646 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P R H ++DP+ I +R +A GK LV Sbjct: 647 LQDHINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKALVA 706 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 D + IE R+LA +A +AF+ G D++ T + F V ++T D R K + Sbjct: 707 LDYSQIELRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFG 766 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y + +A+ F E P Sbjct: 767 VIYGISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP-------- 799 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 +T N A++ V ++ +K Sbjct: 800 -----------------------------GIRTYMNDTKAFAKEHGFVQTLFGRK----- 825 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-- 616 + P + R R+ +N +Q + D++ M+ Sbjct: 826 -IHTPEISAKGPRAGFAQRAAINAP------------------IQGTAADVIRRAMIRMP 866 Query: 617 --ATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657 ++L VHDE++ E E + H+M + Sbjct: 867 DAIKDLPATMLLQVHDELLFEVEKGAEDDLIAAARHVMENAADP 910 >gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] Length = 931 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 86/559 (15%), Positives = 160/559 (28%), Gaps = 81/559 (14%) Query: 46 DCVHDPVMPQV----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 D + + L LE+ + + N ++ + L I + T++L+ Sbjct: 394 DLAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYDSKI---FAQLGITVAPIDDTMLLSY 450 Query: 102 SNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + K L+ T + + Y Sbjct: 451 VMHAGLHGHGMDALSERYLGHTPIPIKPLLGSGKSAVTFDKV----------PLAQAVPY 500 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T +++ +P + E+ L + + G VD ++ Sbjct: 501 AAEDADITLRLWQLFKPQLHRIQVTKVYETLERPLVPVLAAMERSGIKVDRDTLSRMSNA 560 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ L G + ++L LF E GL +T T VL Sbjct: 561 FAQKMAGLEDEIYELA-GRKFNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLEDL 619 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 ++ + R S+ Sbjct: 620 ATEHDLPGRILDWRQL-------------------------------SKLKSTYTDALQD 648 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 R H ++DP+ I +R +A EGK LV D Sbjct: 649 HINKDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGKVLVALDY 708 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA +A +AF+ G D++ T + F V ++T D R K + + Y Sbjct: 709 SQIELRILAHIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAINFGVIY 768 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 +A + + + + R +N A E F+ T Sbjct: 769 GISGF---GLARNLRIPRAEAQGFID------RYFERFPGIRTYMDNTKAFAKEHGFVQT 819 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 R K + ++ +A G A +R + + KD ++ Sbjct: 820 LFGR-KINTPEIGAKGPRA-GFAQRAAINAPIQGTAADVIRRAMIRMPAAIKDIPA-TML 876 Query: 562 LPSGRSLVYRDVGNNRSYL 580 L L++ L Sbjct: 877 LQVHDELLFEVEKGAEDAL 895 >gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] Length = 968 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 95/554 (17%), Positives = 169/554 (30%), Gaps = 74/554 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 + L+ L + V + HN+ ++ VL + + I T++++ S Sbjct: 441 EALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITPVDDTMLISYSMDAGRHGHGMDE 500 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 +L+ + E+ P + A Y D VT +++ Sbjct: 501 LSLRHLGHRPIPFDEV----------TGTGRARIPFSQVALDKATAYAAEDADVTLRLWQ 550 Query: 174 RLEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P ++ L +Q + G VD A + + L+QE+ Sbjct: 551 ALRPRLRPDRSLALYEQVERRMVAVLRDMEMAGIKVDGAELARIGEDFSQRMVVLEQEIH 610 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278 L G + ++L LF E L + T VL +V + Sbjct: 611 ELA-GKPFNVGSPKQLGEILFDEQKLPGGKRGKNGAWGTDASVLEDLAARGHELPRRVLH 669 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + Q R R H + Sbjct: 670 WRQLA-------------------------------KLKSTYVEGLAAQIDRRDGRVHTD 698 Query: 339 LDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +T +++P+ I +R +A G L+ AD + IE R+LA +A Sbjct: 699 FSMAVTSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVAEPGHVLLAADYSQIELRLLAHLA 758 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 AF GED++ T A F +AP +V K+ R K + + Y A +A+ Sbjct: 759 DVPSLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYGMSAF---GLAA 815 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ ++ + M E A E ++ + R K Sbjct: 816 RLGIGPGEARGIIDA-----YFSQYPGILEEM-ERLKSEAREKGYVLSPFGR-KLWIDGI 868 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRD 572 ++ +A G A KR V + + + ++L L++ Sbjct: 869 QAKEQARRGNAERAAINAPFQGGAAEIIKRAMVRMPAALRAAGLSARMLLQVHDELLFEV 928 Query: 573 VGNNRSYLNTTTRQ 586 RQ Sbjct: 929 PEAEVDATAECVRQ 942 >gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10] gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10] Length = 928 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 103/646 (15%), Positives = 191/646 (29%), Gaps = 141/646 (21%) Query: 48 VHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +P +VLK LE+ V + N ++ VL I + + T++++ Sbjct: 388 AAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY---GIDVAPYDDTMLISYV 444 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKEL-IARFCKGETHECLYDRNK-PNHREAWRLFGEY 160 L M+ EL + C C +N+ + Y Sbjct: 445 MEA-----------GLHGHGMDALAELHLGHTCIPFKEICGTGKNQITFDKVPLDKATLY 493 Query: 161 CKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T +++ L+P + E+ + + + G VD + L+ Sbjct: 494 AAEDADITLRLWEILKPALVAKKMATVYETLERPMADVLSKMERVGIKVDPDQLNRLSS- 552 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 ++ + G + +++ LF E GL T+T ++ Sbjct: 553 DFGQKMMAAEAEAHEAAGRDFNVASPKQIGEILFGEMGLPGGKKTKTGAWSTDAAVLDQL 612 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + L++ ++ Sbjct: 613 AAEGHALPVAL--------------------------LEYRQFAKLKSTYSDSLFAHINR 646 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385 R H T +++P+ I +R IA G LV AD + +E Sbjct: 647 DTKRVHTSFSLAATTTGRLSSTEPNLQNIPIRTEAGRQIREVFIAEPGHVLVAADYSQVE 706 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A + +AF G D++ T + F V + R K + + Y A Sbjct: 707 LRLLAHIANVESLKQAFRDGTDIHAMTASEVFGVPIEGMDPMVRRKAKAINFGVIYGISA 766 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 +A+ G+ + Sbjct: 767 F---GLANQIGVKRDEA------------------------------------------- 780 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPS 564 K + + + + + E G I +R P + +DKN P+ Sbjct: 781 -KAFIDAYFEKFPGIRAYMDEMKAKAAETGYVETIFGRRAHFPGI---RDKN------PN 830 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 R R +N + G + I +A+ R + +NA + Sbjct: 831 MRMFA------ERQAINAPIQ---------GSAADVIRRAMIR---MDDALNAANLDAKM 872 Query: 625 VLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL--PLKAEG 667 +L VHDE+V E P+ + L +M S A L PL + Sbjct: 873 LLQVHDELVFEVPENQAADLIALTAKVMGEACSPALELSVPLVVDA 918 >gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 883 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 105/621 (16%), Positives = 201/621 (32%), Gaps = 139/621 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV 112 + +K LE+ ++ + ++ E L DI + L +A+ P + Sbjct: 360 EKIKHILEDENIEKIGYDIKAEYLSL---LPYDISLRGIKYDLKIAKYLLSPDNNSYDIS 416 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTVTRE 170 A++ ++ +E F KG+ + + K E + + D+ V Sbjct: 417 EIAMEYGLSHLQSHEE---FFGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDI-VMTA 472 Query: 171 I--FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 I + + E L + + G +D +L+ E+ L G Sbjct: 473 IRDSEMTKLFEDVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESEIYELA-G 531 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + L T+T VL + ++ + R Sbjct: 532 EEFNINSPKQLGVILFEKLNLPPVKKTKTGYSTDAAVLEELSDMHDIIGKIISYRQYTKL 591 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L+ +N P R H +Q I Sbjct: 592 QSTY-VEGLLNIIN------------------------------PNTERIHSSFNQTIAA 620 Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I I +R IA +G LV +D + IE RVLA ++ E+ ++ Sbjct: 621 TGRISSTEPNLQNIPVRLEIGRNLRKAFIARQGCVLVDSDYSQIELRVLAHISDEEALIQ 680 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF D++ T + F V ++VTK+QR K + + Y +++ G+ Sbjct: 681 AFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVYGISDF---GLSNNLGITKK 737 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +KT + +++ E + + + EH Sbjct: 738 KAGQYIKT--YLDRYKNIEKYMQDVVAFGEEHGYV------------------------- 770 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 I +RR +P + K KN +I L R + Sbjct: 771 ----------------TTILGRRRSIPQL---KQKNIMIKNL------------GKRLAM 799 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 NT +Q + DI+ M+ ++L VHDE++ Sbjct: 800 NTP------------------IQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDELII 841 Query: 635 ET-PDTDEFNASMLYHLMTSN 654 E D ++ ++L M+ Sbjct: 842 EATADEQDYIKALLQEEMSKA 862 >gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase Length = 543 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 47 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 103 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 104 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 156 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 157 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 215 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 216 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 244 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 245 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 304 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 305 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 364 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 365 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 405 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 406 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 429 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 430 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 465 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 466 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 525 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 526 --VPLEVE 531 >gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium] Length = 944 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 106/691 (15%), Positives = 227/691 (32%), Gaps = 168/691 (24%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALE 62 D ET S + + ++ A + D + + + LE Sbjct: 374 DTETTSLVAIE----------AELVGLALSYYAGEAYYVPFPADKAQTQAILEEFRGVLE 423 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA-LKL 118 + ++ + N ++ TVLK +I I +LA P ++ A+ E L Sbjct: 424 SENIKKIGQNLKYDITVLKKY---NIEIKGECFDTMLASYLLDPDNRHSMDAMAEKYLNY 480 Query: 119 SSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 S K++ LI + K T + D + EY D +T ++ + P Sbjct: 481 SPVKIDT---LIGKKSTKNTTQGNMRD-------VEVQKVVEYAGEDADITLQLKEYFAP 530 Query: 178 LSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++ E L ++ I G +D ++I+D + L+Q + +L+ Sbjct: 531 KVAERPILEKLFKTVEMPLMHVLAHIEATGVRIDTQALAESSEILDKDIKILEQTIYTLS 590 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G V + ++L LF + L +++ +T + + + LT Sbjct: 591 -GEVFNIASPQQLGKVLFEKLNL-MKNPPKTKTGQYATGEEVLTKLTDNEI--------- 639 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ L+ + P R H +Q + Sbjct: 640 -----------------VQQILEIRELQKLKSTYVDALPALVSKIDGRLHTSYNQAVVAT 682 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R I + ++ AD + IE R++A + ++ ++ Sbjct: 683 GRLSSTNPNLQNIPIKTAKGREIRKAFIPTDDDFVILSADYSQIELRLIAAFSQDETMME 742 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G D++ T ++ + + +VT D R + K A+ Y A + ++ + Sbjct: 743 AFNNGTDIHTATASKIYKIDIQEVTADMRRMAKTANFAILYGSSAFNLS---AQLKISTS 799 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ ++ + S V + Sbjct: 800 EAK-----------------------------------------KLIDSYYGEFSAVKKF 818 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +E+ Q Q E + + R+R Y+ ++ + R+ Sbjct: 819 KDEMIQKARQ-FEYAETFLGRRR------YLAGINGGAMVSGQAERN------------- 858 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + +Q + D++ M++ K ++L VHDE+V Sbjct: 859 ----------------AVNSPIQGTAADMIKLAMIDIHRFMMREKMQSKMILQVHDELVF 902 Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLK 664 + ++ +F + LM + A LP++ Sbjct: 903 DAHKSEIDFLKENVIKLMEN----ALLLPVR 929 >gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2] gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2] Length = 938 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 93/643 (14%), Positives = 182/643 (28%), Gaps = 157/643 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA-RSNGLPSALKAVGEA 115 LK L++ V + N ++ + LDI + T++++ N + Sbjct: 411 LKPVLQDPAVIKIGQNMKYDAKIFAR---LDIDVAPIDDTMLMSYAMNAGKHNHGMDTLS 467 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K L+ +DR +Y D +T ++++ Sbjct: 468 ERYLGHTPIPIKPLLGSG----KSAITFDR------VPVDDAVKYAAEDADITLRLWQQF 517 Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ L + + G VD ++ + L+ E++ + Sbjct: 518 KPQLHMNRVTTVYETMERPLVPVLAQMERHGIKVDRDTLSRMSNAFAQKMAGLEDEIQEM 577 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---------TTCQRVLSSNKKLTPQAIQV 276 G + ++L LF E GL + D + +T VL L ++ Sbjct: 578 A-GRPFNVGSPKQLGEILFDEMGLEMPDGKKPSTGKTGAYSTGADVLEDLATLHDMPRRI 636 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R S+ R H Sbjct: 637 LDWRQL-------------------------------SKLKSTYTDALQEHINAETGRVH 665 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + ++DP+ I +R +A +GK +V D + IE R+LA Sbjct: 666 TSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEDGKVIVSLDYSQIELRILAH 725 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +AG +AF G D++ T + F+V ++T D R K + + Y + Sbjct: 726 IAGIDALKQAFLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARN 785 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 +A+ F E P R Sbjct: 786 LRI-------------------PRGEAQGFIDRYFERFP------------------GIR 808 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + ++ QT+ K + P + Sbjct: 809 KYMDDTVAF--AKENSYVQTLFGRK-----------------------INTPEINAKGPH 843 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLT 627 R+ +N +Q + D++ M+ A ++L Sbjct: 844 AGFAKRAAINAP------------------IQGTAADVIRRAMIRMPDAIAGLPAKMLLQ 885 Query: 628 VHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667 VHDE++ E + + +M + A + L + Sbjct: 886 VHDELIFEVEEGAVDDLITAARDVMENASDPAVKLDVKLAVDA 928 >gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] Length = 932 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 87/548 (15%), Positives = 175/548 (31%), Gaps = 78/548 (14%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D + + + EN + V N ++ VL+ N +I + + ++A Sbjct: 398 DKAATTKLLETFRPFFENEHIGKVGQNLKYDLKVLQ---NYNIEVRGALFDTMIAHYLLN 454 Query: 106 P-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 P + + + LI + + R P EY D Sbjct: 455 PDMRHNMDILSETYLNYTPIAIESLIGKGKAQRS-----MRTVP-----LDQVKEYAVED 504 Query: 165 VTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 VT ++ + + E L + + G +DV + +D + Sbjct: 505 ADVTWQLKNVFKEEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDAD 564 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKL 269 +L+ + G + ++L LF + + T+T T + VL+ Sbjct: 565 IAQLEATIAEQA-GENFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASK 623 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + R + P + Sbjct: 624 HKIVADILEWRQ-------------------------------VQKLKSTYVDALPLEVN 652 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAG 383 R H Q + +++P+ I VR IA L+ AD + Sbjct: 653 KLTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQ 712 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R++A ++ E + +F ED++ +T A+ F+V +VT++QR+ K + + Y Sbjct: 713 IELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGV 772 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A +++ T L+ + L+ T A + + N+ + EH + +G Sbjct: 773 SAF---GLSAQTNLSRSESKELIDTYYA--TYPNLRNYISKQIQFAQEHGYVETVLGR-- 825 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILML 562 ++ HSR + + G A K + + + + ++L Sbjct: 826 ---RRYLPDIHSRNQVVRGAAERNAVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLL 882 Query: 563 PSGRSLVY 570 LV+ Sbjct: 883 QVHDELVF 890 Score = 57.1 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 21/146 (14%) Query: 529 EQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ I+ A R + + ++ + +L GR D+ + N R Sbjct: 789 KELIDTYYATYPNLRNYISKQIQFAQEHGYVETVL--GRRRYLPDIHS----RNQVVRGA 842 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDE 641 +Q + DI+ M+ ++L VHDE+V + P T+ Sbjct: 843 AERNA-----VNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTEL 897 Query: 642 FNAS-MLYHLMTSNPSWAKGLPLKAE 666 ++ M S + A +PL A+ Sbjct: 898 NTVKPLIKEAMESAFTLA--VPLVAD 921 >gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] Length = 941 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 102/638 (15%), Positives = 179/638 (28%), Gaps = 150/638 (23%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 +LK LE+ + + N ++ + K +D+ + A + GL + Sbjct: 418 ILKPMLEDDSILKIGQNMKYDAKIFKRV-GIDVDPIDDTMLMSYAMNAGL-HRHGMDVLS 475 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + K L+ +T R Y D +T +++ Sbjct: 476 EQYLGHTPIPIKPLLGAGKSAKTFN----------RVPVEDAVRYAAEDADITLRLWEVF 525 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ L + + G VD ++ + L+ EL L Sbjct: 526 KPQLHRKQVTSVYETMERPLVPVLAKMEMHGIKVDRDTLSRMSNAFAQKMAGLEDELYEL 585 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++ LF + GL + T VL +V + R Sbjct: 586 AGG-KFNVGSPAQVGEILFDQMGLEGGKKGKNGKYATGADVLEDLATEHDLPGRVLDWRQ 644 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ R H Sbjct: 645 L-------------------------------SKLKSTYTDALQTHINAETGRVHTSYSI 673 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I +R IA EGK LV D + IE R+LA +A Sbjct: 674 TGANTGRLSSTDPNLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHVANID 733 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF G D++ T + FNV ++T D R K + + Y + Sbjct: 734 ALKQAFRDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRI-- 791 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 +A+ F E P I T + ++H+R Sbjct: 792 -----------------PRAEAQGFIDRYFERFP--GIRTYMDDTVA------FAKEHNR 826 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V L+ + P + Sbjct: 827 VETLFGR-----------------------------------KIHTPEINAKGPGAGFAK 851 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEI 632 R+ +N +Q + D++ M+ A ++L VHDE+ Sbjct: 852 RAAINAP------------------IQGTAADVIRRAMIRMDDAIAHLPAKMLLQVHDEL 893 Query: 633 VCETP-DTDEFNASMLYHLM--TSNPSWAKGLPLKAEG 667 V E D E + +M +NP +PL + Sbjct: 894 VFEVDKDAAEDLIAAARDVMENAANPVVKFDVPLVVDA 931 >gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119] gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119] Length = 878 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 103/661 (15%), Positives = 205/661 (31%), Gaps = 141/661 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F +D + D + P+++K LEN + V +++ + V+ Sbjct: 330 YLKD-DILKFGF-YDKERYIVVDADNIKDYPELIKW-LENENSKKVVYDAK-KTFVIAHR 385 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 N++I + +LA P + V +++ KE ++ + KG+ Sbjct: 386 LNINI--QNIVFDAMLASYIFDPSRTIDDVYSV--VTNYHQTYVKEDVSIYGKGKKRHVP 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 H + + K + E +++ L E L + + + G DV Sbjct: 442 DTEILNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVN 501 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261 + Q + + L Q + G + ++L LF L + T+T Sbjct: 502 DLQHMQQELQEKLELLVQRIHD-AAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTA 560 Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + P + R A + Sbjct: 561 VDVLEQLQNEHPIINDILEYRQLA-------------------------------KLQST 589 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EG 373 + R H +Q + + DP+ I +R S E Sbjct: 590 YVEGLQK-VISNDKRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPSSED 648 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 ++ AD + IE RVLA + + +AF G+D++ T + F V +VT R K Sbjct: 649 SVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAK 708 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + + + + ++ + + + + A Sbjct: 709 AVNFGIVYGISDYGLSQ---SLNITRKEAKIFID------DYLASFPGVKQYMSDIVKDA 759 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + ++ T +RR +P + + Sbjct: 760 KANGYVETLL-------------------------------------HRRRYIPDITSRN 782 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R R+ +NT +Q + DI+ Sbjct: 783 F---------NLRGFA------ERTAMNTP------------------IQGSAADIIKLA 809 Query: 614 MMNATKA------GYDIVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 M+ K ++L VHDE++ E P + +EF+ + +M +PLK Sbjct: 810 MVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSL-FVEDIMEHALD--LDVPLKV 866 Query: 666 E 666 + Sbjct: 867 D 867 >gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 44 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 100 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 101 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 153 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 154 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 212 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 213 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 241 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 242 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 301 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 302 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 361 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 362 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 402 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 403 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 426 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 427 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 462 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 463 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 522 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 523 --VPLEVE 528 >gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I From T. Aquaticus Bound To A PrimerTEMPLATE DNA Length = 539 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 43 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 99 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 100 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 152 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 153 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 211 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 212 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 240 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 241 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 300 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 301 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 360 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 361 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 401 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 402 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 425 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 426 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 461 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 462 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 521 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 522 --VPLEVE 527 >gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 538 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 42 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 98 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 99 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 151 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 152 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 210 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 211 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 239 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 240 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 299 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 300 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 359 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 360 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 400 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 401 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 424 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 425 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 460 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 461 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 520 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 521 --VPLEVE 526 >gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] Length = 878 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 103/661 (15%), Positives = 205/661 (31%), Gaps = 141/661 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F +D + D + P+++K LEN + V +++ + V+ Sbjct: 330 YLKD-DILKFGF-YDKERYIVVDADNIKDYPELIKW-LENENSKKVVYDAK-KTFVIAHR 385 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 N++I + +LA P + V +++ KE ++ + KG+ Sbjct: 386 LNINI--QNIVFDAMLASYIIDPSRTIDDVYSV--VTNYHQTYVKEDVSIYGKGKKRHVP 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 H + + K + E +++ L E L + + + G DV Sbjct: 442 DTEILNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVN 501 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261 + Q + + L Q + G + ++L LF L + T+T Sbjct: 502 DLQHMQQELQEKLELLVQRIHD-AAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTA 560 Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + P + R A + Sbjct: 561 VDVLEQLQNEHPIINDILEYRQLA-------------------------------KLQST 589 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EG 373 + R H +Q + + DP+ I +R S E Sbjct: 590 YVEGLQK-VISNDKRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPSSED 648 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 ++ AD + IE RVLA + + +AF G+D++ T + F V +VT R K Sbjct: 649 SVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAK 708 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + + + + ++ + + + + A Sbjct: 709 AVNFGIVYGISDYGLSQ---SLNITRKEAKIFID------DYLASFPGVKQYMSDIVKDA 759 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + ++ T +RR +P + + Sbjct: 760 KANGYVETLL-------------------------------------HRRRYIPDITSRN 782 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R R+ +NT +Q + DI+ Sbjct: 783 F---------NLRGFA------ERTAMNTP------------------IQGSAADIIKLA 809 Query: 614 MMNATKA------GYDIVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 M+ K ++L VHDE++ E P + +EF+ + +M +PLK Sbjct: 810 MVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSL-FVEDIMEHALD--LDVPLKV 866 Query: 666 E 666 + Sbjct: 867 D 867 >gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex Wi Abasic Site gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna Pol In Complex With A Blunt-Ended Dna And Ddatp gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Ethylated Dttp gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Methylated Dttp gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidines gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidies Length = 540 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 44 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 100 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 101 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 153 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 154 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 212 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 213 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 241 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 242 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 301 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 302 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 361 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 362 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 402 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 403 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 426 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 427 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 462 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 463 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 522 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 523 --VPLEVE 528 >gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] Length = 933 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 89/653 (13%), Positives = 173/653 (26%), Gaps = 155/653 (23%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D + + MP ++LK LE+ + + N ++ + PI + Sbjct: 395 DALAEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARYGVDVAPIDDTMLMSY-- 452 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + K L+ T + + Y Sbjct: 453 AMHAGEHGHGMDTLSERYLGHTPIPIKPLLGSGKSAITFDKV----------PIDEATAY 502 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++K +P + E+ L + + G VD + ++ Sbjct: 503 AAEDADITLRLWKLFKPQLHRVQVTTVYETLERPLVPVLAQMEMHGIKVDRDVLSRMSNA 562 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + L+ E+ L G + +L LF + GL + +T VL Sbjct: 563 FAQKMAALEAEIHELA-GETFNVGSPAQLGEILFEKMGLEGGKKGKTGKYSTGADVLEDL 621 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +V + R S+ Sbjct: 622 ATEHELPRKVLDWRQL-------------------------------SKLKSTYTDALQT 650 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H + ++DP+ I +R +A G LV D Sbjct: 651 HINPDTGRVHTSYAITGANTGRLASTDPNLQNIPVRTEEGRRIREAFVAEPGNVLVSLDY 710 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA +A +AF G D++ T + F+V ++T + R K + + Y Sbjct: 711 SQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAINFGVIY 770 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + +A+ F E P Sbjct: 771 GISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP----------- 800 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 +++ I K + + Sbjct: 801 ---GIRRYMDD------------------------TIAFAKEHGYVQTLFGRK-----IH 828 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617 P + R+ +N +Q + D++ M+ Sbjct: 829 TPEINAKGPHAGFARRAAINAP------------------IQGTAADVIRRAMVRMPEAI 870 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E + + +M + P A + L + Sbjct: 871 DGLPAKMLLQVHDELLFEVAEDAVDQTIEIARDVMENAPDPAVKLDVKLTVDA 923 >gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] Length = 903 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 202/635 (31%), Gaps = 135/635 (21%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 P L L N ++T AHN+ + ++ + I +L+ Sbjct: 378 MFVSEGHPG-LIALLTNKNITKTAHNAKY---LMNLLASAGQEIQGLDFDTMLSAHLLGE 433 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L + ++ + + + + + + + KG Sbjct: 434 KNLGIKDLVFEHFGVEIADVENI---LTQNGKKKSFSASELSEAAQLVADYTFRLKGLFA 490 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 K ++ + E L + + G +D L + + V + KL++ + + Sbjct: 491 AQLAETKLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA 550 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF E L + T+T VL K + RM Sbjct: 551 -GHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRML- 608 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + P P R H +Q Sbjct: 609 ------------------------------VKLKSTYLDTLPRMVNPHTRRLHTSFNQTR 638 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +S+P+ I +R IA +G ++ D + I+ RVLA ++G+ Sbjct: 639 TATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPAL 698 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF +D++ T AR N+ P++VTK+QR + K + + Y + ++ T L+ Sbjct: 699 IEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQ---ATELS 755 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L ++ KA+ +K+ RV+ Sbjct: 756 LAEA-----------------------------------------DKFIKAYFEKYPRVA 774 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + E+ + +RR +P + Sbjct: 775 IYFAEIKHQART--NGYVETLLGRRRYIPEI----------------------------- 803 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 N+ R + RE VQ S DI+ M+ K ++L VHDE+ Sbjct: 804 --NSPNR-ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDEL 859 Query: 633 VCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666 + E PD + +++L M+ + +PLK E Sbjct: 860 IFEVPDAELKRMSALLMETMSGAVT--FEIPLKVE 892 >gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5] gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5] Length = 988 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 103/687 (14%), Positives = 198/687 (28%), Gaps = 172/687 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVL---- 57 ID ET S Y ++ +F H H D ++ + L Sbjct: 396 IDTETTSV----------YWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLDRDT 445 Query: 58 -----KEALENTDVTIVAHNSYFERTVLKAC-----FNLDIPIHRWICTLVLARSNGLPS 107 K LEN ++ + + ++ +L N+ + W +LA + Sbjct: 446 VLARLKPILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 505 Query: 108 --ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 A + +++ + K + + + A + +Y D Sbjct: 506 ITRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQV----------AIDIASDYACEDA 555 Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 +T ++F L E + + G + + L++ D E Sbjct: 556 DITYQLFDLFSKKLADDTNNAKLLHELEIPTAEILCQMEANGILIRRPFLNELSKRFDEE 615 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 L++ + G + ++L LF + G+ T+T S+ + + + Sbjct: 616 IIALEKRAYEVA-GEEFNLGSPKQLGEMLFDKLGVVGGKKTKTGQ---YSTGEAVLSKID 671 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + TL++ G S+ + R Sbjct: 672 HPL--------------------------VDITLEYRGLSKLKSTYTDALDNVADAKTDR 705 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H Q +T ++DP+ I +R IA EG+ ++ AD + IE R++ Sbjct: 706 VHTSYHQALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELRLM 765 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +G++ AF G D++ T A A+VT +R K + L Y A Sbjct: 766 AHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVAEVTATERRNAKAINFGLLYGMSAF--- 822 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +A ++ + + ++D I T Sbjct: 823 GLAKQLQMSRSEAQDYIDMY------------------FERYPGVKDYMINTRA------ 858 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + + +TI K +V Sbjct: 859 ------------SAYEHGYIETILGRKLYTPDINHSNRMV-------------------- 886 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIV 625 G R+ +N Q + D++ M+ K ++ Sbjct: 887 --KQGAERAAINAPL------------------QGSAADLIKLAMIAVDKVLPKEQAKML 926 Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMT 652 L VHDE+V E + L+T Sbjct: 927 LQVHDELVFEVDAD---KVDEISQLIT 950 >gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 833 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 337 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 393 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 394 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 446 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 447 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 505 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 506 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 534 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 535 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 594 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 595 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 654 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 655 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 695 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 696 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 719 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 720 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 755 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 756 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 815 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 816 --VPLEVE 821 >gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT] gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT] Length = 903 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 110/637 (17%), Positives = 206/637 (32%), Gaps = 139/637 (21%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 P L L N ++T AHN+ + ++ + I +L+ Sbjct: 378 MFVSEGHPG-LIALLTNKNITKTAHNAKY---LMNLLASAGQEIQGLDFDTMLSAHLLGE 433 Query: 107 SALKAVGEALKLSSQKMEEGKE-LIARFCKGE-THECLYDRNKPNHREAWRLFGEYCKGD 164 L + ++ + + L K + L + + +RL G + Sbjct: 434 KNLGIKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQL 493 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + ++ + E L + + G +D L + + V + KL++ + + Sbjct: 494 AEI-----NLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYA 548 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF E L + T+T VL K + RM Sbjct: 549 QA-GHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRM 607 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + P P R H +Q Sbjct: 608 L-------------------------------VKLKSTYLDTLPRMVNPHTRRLHTSFNQ 636 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T +S+P+ I +R IA +G ++ D + I+ RVLA ++G+ Sbjct: 637 TRTATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDP 696 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF +D++ T AR N+ P++VTK+QR + K + + Y + ++ T Sbjct: 697 ALIEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQ---ATE 753 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+L ++ KA+ +K+ R Sbjct: 754 LSLAEA-----------------------------------------DKFIKAYFEKYPR 772 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V+ + E+ + +RR +P + Sbjct: 773 VAIYFAEIKHQART--NGYVETLLGRRRYIPEI--------------------------- 803 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 N+ R + RE VQ S DI+ M+ K ++L VHD Sbjct: 804 ----NSPNR-ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHD 857 Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666 E++ E PD + +++L M+ + +PLK E Sbjct: 858 ELIFEVPDAEFKRMSALLMETMSGAVT--FEIPLKVE 892 >gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454] gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 927 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 114/699 (16%), Positives = 202/699 (28%), Gaps = 172/699 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------ 57 D ET S + ++ +F + H P P L Sbjct: 353 SFDTETTSLDPMR----------ARIVGVSFATEPGRAAYVPLAHRGPDHPVQLPRDEVL 402 Query: 58 ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 K LE+ V + ++ VL + I TL+ + Sbjct: 403 ARLKPWLESPAHKKVGQHLKYDAQVLASHGITLAGIE--HDTLLESYVLESHRPHDMDNL 460 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K + +++ + + +D + + EY D +T + + Sbjct: 461 ATRHLGVKTIKYEDVAGKGA----AQIGFD------EVSVDVATEYSAEDADITLRLHQV 510 Query: 175 LEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L P E+ L Y+ Q I G +D + + + +L E Sbjct: 511 LYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQSNELGIRMLELQAEAY 570 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 +L G + +++ F + L + +T + VL + P + Sbjct: 571 ALAGG-EFNLNSPKQIGEIFFQQLQLPVVKKTPSGAPSTDEDVLQKLAEDYPLPKVLL-- 627 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ P P R H Sbjct: 628 -----------------------------DYRALTKLKSTYTDKLPKMINPDTGRVHTNY 658 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IA G +V AD + IE R++A ++G Sbjct: 659 AQAVAVTGRLASNDPNLQNIPVRTPEGRRIREAFIAPPGSSIVSADYSQIELRIMAHISG 718 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AFE GED++ T + F V +VT +QR I KV+ L Sbjct: 719 DASLMAAFEHGEDVHRATASEIFGVTRQEVTSEQRRIAKVINFGLI-----YGMSAFGLA 773 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + L G A + K + Sbjct: 774 SNL------------------------------------------GIARDAAKLYIDRYF 791 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +R + + + + G RR L LP Sbjct: 792 ARYPGVARYMDETRMEAKSCGFVQTVFGRR---------------LWLP----------- 825 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628 + N RQ +Q + D++ M+ + +++ V Sbjct: 826 -EINGGNGPRRQAAERAA-----INAPMQGTAADLIKLSMITVQDWIERARVKSRLIMQV 879 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E PD + E + + LM S +PL AE Sbjct: 880 HDELVLEVPDDELEIIRAKVPELMCSVAQ--LNVPLVAE 916 >gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 191/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L GL ++ A+ E L L L+A T E + Sbjct: 44 PEPYKALRDLKEERGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 100 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 101 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 153 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 154 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 212 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 213 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 241 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 242 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 301 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 302 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 361 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 362 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 402 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 403 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 426 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 427 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 462 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 463 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 522 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 523 --VPLEVE 528 >gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] Length = 897 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 98/665 (14%), Positives = 195/665 (29%), Gaps = 174/665 (26%) Query: 30 VILFAFGFDDHP---VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ F + +++ D + +KE LE+ ++ + H+ E ++ + Sbjct: 346 ILAITFSVNGEKLYYIDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHE---IRHFYVH 402 Query: 87 DIPIHRWICTLVLARSNGLPS----ALKAV----------------GEALKLSSQKMEEG 126 DI + ++ P+ ALK + G+ L S Sbjct: 403 DIEMKNVTFDTMIGEYLIDPAKSSYALKDLAAQYIGQEVMSEEELRGKGKNLISIGEAPK 462 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186 ++L+ C+ + + E + + + + E L Sbjct: 463 EDLMKYLCQRVSVIGKI------YPE------------IKAKMQELELEKLYYEVELPLV 504 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + +G VD ++ L + L + + L + ++L LF + Sbjct: 505 EVLAAMEYKGIKVDRSMLEILEIEFGEQIDLLTKAIHELA-ETNFNINSPKQLGEVLFEK 563 Query: 247 TGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L T+T VL + ++ R Sbjct: 564 LELPPIKKTKTGYSTNAEVLEKLQDQHDIIPKILEYRQ---------------------- 601 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 ++ P R H +Q +T +++P+ I Sbjct: 602 ---------VTKLKSTYVDGLLNIINPETGRIHSNFNQTVTTTGRISSTEPNLQNIPIKL 652 Query: 361 --SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R +A+E + + AD + +E RVLA + ++ L AF +D++ T A F+ Sbjct: 653 EMGRRLRKVFVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFD 712 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V +VT R+ K + + Y + + T + Sbjct: 713 VPMEEVTDSMRSSAKAVNFGIVYGISDYGLSQNLNITRVKA------------------- 753 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 KK + + + + EQ + G + Sbjct: 754 ----------------------------KKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVV 785 Query: 539 IARKRRDVPLVYMKKDKNNLILMLP--SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 RR LP R+ R G R +NT Sbjct: 786 TLFNRRRY---------------LPELKSRNFNIRSFGE-RMAMNTP------------- 816 Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYH 649 +Q + DI+ M+N + ++L VHDE++ E PD + E ++ Sbjct: 817 -----IQGSAADIIKIAMVNVYRRLKEQGLTSKLILQVHDELIVEAPDNEVEVAIKIVRE 871 Query: 650 LMTSN 654 M Sbjct: 872 SMEEA 876 >gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq polymerase 1 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New Orientation For The Structure-Specific Nuclease Domain gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus] Length = 832 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 336 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 392 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 393 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 445 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 446 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 504 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 505 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 533 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 534 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 593 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 594 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 653 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 654 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 694 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 695 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 718 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 719 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 754 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 755 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 814 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 815 --VPLEVE 820 >gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct] gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct] Length = 829 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 333 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 389 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 390 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 442 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 443 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 501 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 502 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 530 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 531 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 590 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 591 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 650 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 651 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 691 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 692 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 715 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 716 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 751 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 752 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 811 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 812 --VPLEVE 817 >gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] Length = 1027 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 105/640 (16%), Positives = 195/640 (30%), Gaps = 148/640 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 LK LE+ + V F +L + + +++ + L A Sbjct: 499 DALKPVLESAGIAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSHGLDA 555 Query: 112 VGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E+ L + + E G + + Y V+ Sbjct: 556 LSESNLGHTLHTLTELT--------GTGKNKIG-----LDQVGIDRATAYAAERADVSLR 602 Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + L+P E+ L + + RG +D + L+ +++ Sbjct: 603 LARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEA 662 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQ 275 E+ L G + ++L LF + GL T+T T +VL + + Sbjct: 663 EIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPKK 721 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R S+ P P+ R Sbjct: 722 ILEWRQ-------------------------------VSKLRSTYTDALPNYVHPQTHRV 750 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H T +++P+ I +R +A+ G KLV AD + IE R+L+ Sbjct: 751 HTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHKLVSADYSQIELRLLS 810 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A KAF+ G D++ T + F V + + R K + + Y A Sbjct: 811 EVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAF---G 867 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A+ G+ +K +E +M E + + Sbjct: 868 LANQLGIPREEAGAYIK-----RYFERFPGIRAYMDET-------------------RDF 903 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + H V+ L+ ++ P + PS R+ Sbjct: 904 CRAHGYVTTLF-------------------GRKCHYPDIKASN---------PSIRAFNE 935 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 R N R G + I +A+ R E + K ++L VHD Sbjct: 936 RAAINARL---------------QGSAADIIRRAMVR---MEDALAEKKLSAQMLLQVHD 977 Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 E++ E P+ + E ++ +M P A +PL+ + Sbjct: 978 ELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDA 1017 >gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] Length = 894 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 120/664 (18%), Positives = 201/664 (30%), Gaps = 151/664 (22%) Query: 6 IDFETRSPIDLTK--CGICKYAEDVCVILFAFGFD-DHPVELWDCVHDPVMPQVLKEAL- 61 +D ET S L G+ ED A+ H E + V + L E L Sbjct: 317 VDTETDSLDPLKARLVGVSLCTEDGE----AWYLPCGHRDEAGELVAGQLPLDRLIEFLR 372 Query: 62 ---ENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 E+ T + HN F+ VL A L P+H + L + L + Sbjct: 373 PVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTMIGAWLLAPDRRTYKLDDLCG 432 Query: 115 ALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + L EE FC+ Y DV + Sbjct: 433 EINLRMTSYEEVTHADKSEDAFCRVP----------------LEAAKNYSCEDVYGALRL 476 Query: 172 FK----------RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ L L E L + + G VD L+ D R + D+ Sbjct: 477 YQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDR-RLRTDEL 535 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G+ + ++L LF + L T+T + + L+ Sbjct: 536 SIYQAAGMSFNINSPKQLGEVLFEKLQLPKGRKTKTGWSTDVKVLENLSFDHELPAL--- 592 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 LQ+ ++ PR R H +Q Sbjct: 593 -------------------------ILQYRNLAKLKSTYVDKLASLRNPRTGRVHTSFNQ 627 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T +S P+ I +RS IA++G L+ AD + I+ RVLA + ++ Sbjct: 628 CGTATGRLSSSSPNLQNIPIRTEEGRRIRSAFIAADGCLLLAADYSQIDLRVLAHYSQDR 687 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF+ G+D++ T A FNV+P VT + R + K + + Y + ++S Sbjct: 688 ELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVYGMSSF---GLSSQLH 744 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + A + + + + A +D F+ T R ++ + +S Sbjct: 745 VSRKDAQLFIDRYFAH------FSGIKDFMASTIQQAKKDGFVTTLLGR-RRPLAEINSA 797 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + T G A + ML R L+ RD Sbjct: 798 NRVQREFAERTAINTPIQGTAA----------------DIIKLAMLRIHRELLRRDFR-- 839 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 +R +L +HDE+V E Sbjct: 840 -----------------------------ARMLL----------------QIHDELVLEV 854 Query: 637 PDTD 640 P+T+ Sbjct: 855 PETE 858 >gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] Length = 932 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 96/592 (16%), Positives = 188/592 (31%), Gaps = 94/592 (15%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEAL 61 D ET S L AE V + F + P + + + + + Sbjct: 365 DTETTSVNALE-------AELVGIS-FCWSAHKGYYVPFPTDKVEAT---KLLETFRPFF 413 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120 EN + V N ++ VL+ N +I + + ++A P + + Sbjct: 414 ENERIGKVGQNLKYDLKVLQ---NYNIEVRGALFDTMIAHYLLNPDMRHNMDILSETYLN 470 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 + LI + + R P EY D VT ++ + Sbjct: 471 YTPIAIESLIGKGKAQRS-----MRTVP-----LDQVKEYAVEDADVTWQLKNVFKEEMP 520 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E L + + G +DV + +D + +L+ + G Sbjct: 521 KVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQA-GES 579 Query: 231 SSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + + T+T T + VL+ + R Sbjct: 580 FNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILEWRQ---- 635 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + P + R H Q + Sbjct: 636 ---------------------------VQKLKSTYVDALPLEVNKLTGRVHTTYMQTVAA 668 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I VR IA L+ AD + IE R++A ++ E + Sbjct: 669 TGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMI 728 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +F ED++ +T A+ F+V +VT++QR+ K + + Y A +++ T L+ Sbjct: 729 DSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAF---GLSAQTNLSR 785 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + L+ T A + + N+ + EH + +G ++ HSR Sbjct: 786 SESKELIDTYYA--TYPNLRNYISKQIQFAQEHGYVETVLGR-----RRYLPDIHSRNQV 838 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 + + G A K + + + + ++L LV+ Sbjct: 839 VRGAAERNAVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVF 890 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 21/146 (14%) Query: 529 EQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ I+ A R + + ++ + +L GR D+ + N R Sbjct: 789 KELIDTYYATYPNLRNYISKQIQFAQEHGYVETVL--GRRRYLPDIHS----RNQVVRGA 842 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD- 640 +Q + DI+ M+ ++L VHDE+V + P T+ Sbjct: 843 AERNA-----VNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTEL 897 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ M S + A +PL A+ Sbjct: 898 NIVKPLIKEAMESAFNLA--VPLVAD 921 >gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268] gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268] Length = 938 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 109/677 (16%), Positives = 200/677 (29%), Gaps = 162/677 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKE 59 ID ET D I ++ ++ F+F F++ H + + Sbjct: 370 SIDAETLVSFDTETTSID--SKSAKIVGFSFAFNEERAYYVPLAHSYLGAPAQISSDAAK 427 Query: 60 ALENT--DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 A ++ +V N ++ ++K FN++ P R+ T+VLA +A+ + + Sbjct: 428 AAIDSLFRGYVVGQNLKYDFEIVKNNFNIE-PPARFADTMVLAWLLDPANAVGMDSISPR 486 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + +++ + + Y D VT ++ +L+ Sbjct: 487 YLGYETVHFGDVVK-------------KGETFASVELDAATIYASEDAWVTLRLYFKLKG 533 Query: 178 LSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L E L+ L Q + G +DV + L + L E+ L Sbjct: 534 LL--EPALFKLAQELEFPFVRVLWQMQRCGIKIDVEMIKRLIGRNEKSLRALTDEIYELC 591 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283 G + +L LF GL T+T + VL L P ++ + R Sbjct: 592 -GEQFNINSPAQLGAVLFERLGLPAAKRTKTGYSTDESVLKDLTALHPAVGKILDYRELF 650 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + L A+ QN R Q Sbjct: 651 KLQSTYCEPLLQLALAD-------------------------AQN-----RVRSNFLQTG 680 Query: 344 THLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T + +P+ I + VR C +A G L+ D + IE R+LA + + Sbjct: 681 TATGRLASKNPNLQNIPARGTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPAL 740 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L AF ED++ T F R I K + L Y GA K++ + G+ Sbjct: 741 LAAFRADEDIHARTAISIFG----DAQPAHRTIAKSINFGLIYGMGAG---KLSDSLGIA 793 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 ++ S + Sbjct: 794 RAEAKGYIERYF-----------------------------------------AAFSTIK 812 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + + R+ R + + NN Sbjct: 813 EFLQSIKSDAK-ADGYVSTLFGRR-----------------------RYFDFANARNNMV 848 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIVCE 635 Y +Y + Q + DI+ + M++ + ++L +HDE++ E Sbjct: 849 Y-----------ASYEREAVNTKFQGSAADIIKKAMVDISPLLNGEARLILQIHDELIFE 897 Query: 636 T-PDTDEFNASMLYHLM 651 D + + +M Sbjct: 898 VRDDLAQGFGARAQEIM 914 >gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 882 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 99/636 (15%), Positives = 192/636 (30%), Gaps = 160/636 (25%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 A+ D P + ++LK E+ ++ HN +L I + + Sbjct: 365 AYSLDGPP---------DKILEILKTICEDGNIKKYCHNGKETIRLLHR---NGITLRQL 412 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 ++A P++ L +E ++ DR P A Sbjct: 413 AFDTMIAAYLLNPAS-----SNQDLEDISLEHLNAVL----------PGEDRKLP----A 453 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 + +++ + E L + + G VD +++ + Sbjct: 454 QAHCIMELAQLLDNKLKLYGQDRLFYEIEIPLAGILAEMEIEGVAVDKKQLEAMSEELGR 513 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLT 270 + KL E+ LT G + ++L LF + L + T+T VL Sbjct: 514 QIEKLADEIYRLT-GREFNINSPKQLGKVLFEDLKLPVIKKTKTGYSTDADVLEELAAAH 572 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 ++ R A + P Sbjct: 573 EAVAKILEYRQMA-------------------------------KLKSTYADGLAALINP 601 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384 + H Q +T+ +SDP+ I +R I + L+ AD + I Sbjct: 602 ETGKLHTTFHQTVTNTGRLSSSDPNLQNIPIRLEAGRLIRKVFIPGRPENLLLTADYSQI 661 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA ++G+ +KAF+ GED++ T A F V P +VT++ R K + + Y Sbjct: 662 ELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVYGLS 721 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 +A ++ ++ Sbjct: 722 DF---GLARDIKVSRQEARRYIE------------------------------------- 741 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLP 563 +R + + + + + + + G + +RR +P ++ Sbjct: 742 -------NYFARYAGVKDYIERIIREARQKGYVTTLLNRRRYLPDLFSPNR--------- 785 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 + RS R+ +NT +Q + DI+ M+N + + Sbjct: 786 TIRSF------GERTAMNTP------------------IQGSAADIIKLAMVNIHRELAE 821 Query: 624 ------IVLTVHDEIVCETPDTDEFNASMLYH-LMT 652 ++L VHDE++ + P + L M Sbjct: 822 HGLKAKMILQVHDELIFDAPAVEIDQLKDLVKRCME 857 >gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1] gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1] Length = 947 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 94/528 (17%), Positives = 175/528 (33%), Gaps = 90/528 (17%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-----Q 55 +D ET S ++ ++ + + H +P Q Sbjct: 375 LDTETTSLDEMR----------AEIVGISLSVEPGAAAYIPLRHAGPDAPEQLPADEVLQ 424 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114 LK LE+ + + ++R V N I +H + T++ + + Sbjct: 425 RLKPWLEDAARPKLGQHVKYDRHV---FANAGIEVHGYVHDTMLQSYVLEVHRPHGLASL 481 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ ++L C H+ P + Y D T ++ + Sbjct: 482 ALRHTNRTGISYEDL----CGKGAHQI------PFAQVPVDKAAAYACEDADQTLDVHRV 531 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L P E I G +D A + + +L+QE Sbjct: 532 LWPQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSNDLGQRIVQLEQEAYD 591 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 + G + ++L F + G+ + T T T + VL + P ++ +R Sbjct: 592 IA-GQPFNLASPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHR 650 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 +L L + T + + LPR R H Sbjct: 651 --------------------------SLSKLKGTYTDKLAQLA-----LPRTGRVHTHYA 679 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + ++DP+ I VR IA+ G + AD + IE R++A ++G+ Sbjct: 680 QAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAAPGHVIASADYSQIELRIMAHLSGD 739 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF G D++ T + FNV QV+ +QR KV+ L Y + +A Sbjct: 740 ESLLRAFHEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIYGMSSF---GLAKNL 796 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 G+ A + + + + + E +H + G Sbjct: 797 GIETKAAAAYID--RYFQRYPGVKRYMDETVEFARDHGYVETVFGRRL 842 >gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus] Length = 832 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 115/608 (18%), Positives = 192/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 336 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 392 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 393 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 445 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 446 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 504 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 505 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 533 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 534 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 593 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 594 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 653 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 654 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 694 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 695 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 718 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 719 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 754 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 755 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 814 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 815 --VPLEVE 820 >gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] Length = 880 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 105/658 (15%), Positives = 197/658 (29%), Gaps = 161/658 (24%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 ++ + F D V + + + LKE LE+ + + N+ L I Sbjct: 345 EIL---YAFQDESVYSY-KTENNKIADALKEILESETIEKLFINAKESSLAL---LCAGI 397 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL---IARFCKGETHECLYDR 145 + +LA PS+ L + +EL + F + + + Sbjct: 398 EVKNISFEPLLAYYLLQPSS--------SLPDLEEIFSRELDIGMQEFSQDQILAVETIK 449 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 + + D+ E+ L + + G +D Sbjct: 450 LFKLRDILIKKLKDDSLYDLFKNMEL------------PLIKVLAQMEYNGVKIDKDWLQ 497 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262 L+ ++ + ++ L G + ++L LF + GL + T+T V Sbjct: 498 QLSDKLEKRLEIITKKAHELA-GEDFNLNSPKQLGEILFEKLGLPVIKRTKTGYSTNANV 556 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + P + R A + Sbjct: 557 LEKLEGKHPIIPLISEYRELA-------------------------------KLKSTYID 585 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKL 376 PP + H +Q++T +++P+ I +R I S + L Sbjct: 586 SLPPLINSETGKIHTSFNQMVTATGRLSSTNPNLQNIPIRTEEGREIRKAFIPSSDNMIL 645 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + D + IE RV A ++G++ +AF +G D++ T + F V QV+ + R KV+ Sbjct: 646 LAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVIN 705 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y A + + + + Sbjct: 706 FGLAYGMSAYGLSQ---DLDIPVEEAQDYID----------------------------- 733 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + R S + + + ++ E G A R+ Sbjct: 734 ---------------KYFERFSGVKKYMDETIQKVKEKGYAETLYGRKRY---------- 768 Query: 557 NLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 +P S Y RS +NT VQ + DI+ + M+ Sbjct: 769 -----IPEINSSNYHRRSFAERSAINTP------------------VQGTAADIMKKSML 805 Query: 616 NATKAGYDI------VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + + DI +L VHDE+V E + D E A ++ M + +PL + Sbjct: 806 DVYDSLKDIDLEINILLQVHDELVFEVANKDLEKAALLIKDKMEAAAE--LDVPLLVD 861 >gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255] gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255] Length = 932 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 92/643 (14%), Positives = 185/643 (28%), Gaps = 154/643 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVG 113 ++L+ L++ + + N ++ + D+ + T++L+ + NG Sbjct: 407 EILRPVLQDPSIIKIGQNVKYDTKIFARY---DVNLAPVDDTMLLSYAINGGKHNHGMDY 463 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + K K L+ T + + + Y D +T ++K Sbjct: 464 LSERYLNHKPISIKTLLGSGKSAITFDKV----------SINDAVNYAAEDADITLRLWK 513 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +P+ + E+ L + + G VD ++ + L+ E+ Sbjct: 514 LFKPMLHESSVTKIYETLERPLIPVLAKMEMNGIKVDRNTLSRMSNNFAQSMSGLEAEIY 573 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFN 278 +L G + ++L LF + L +T T VL ++V + Sbjct: 574 NLA-GQTFNVGSPKQLGEILFDKLELPGGKKGKTGAYGTGVDVLEDLASEGHELPVKVLD 632 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P R H Sbjct: 633 WRQ-------------------------------MSKLKSTYTDALQGHINPNTGRVHTS 661 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 ++DP+ I +R IA EG L+ D + IE R+LA +A Sbjct: 662 YVISGASTGRLSSTDPNLQNIPIRSEAGRKIREAFIAEEGNVLLSLDYSQIELRILAHIA 721 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +AF G+D++ T ++ FNV + R K + + Y + Sbjct: 722 KIDTLKQAFHEGQDIHALTASQMFNVPLENMDPMVRRQAKAINFGVIYGISGFGLAR--- 778 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + ++A++F E P R Sbjct: 779 ----------------NLRIPRKEAQSFIDTYFERFP------------------GIRTY 804 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + +T+ K + P K Sbjct: 805 MDETVSF--AKENGYVETLFGRKIHTSEINAKGPQAGFAK-------------------- 842 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVH 629 R+ +N +Q + D++ M+ + ++L VH Sbjct: 843 ---RAAINAP------------------IQGTAADVIRRAMVQMPNAISHLPAKMLLQVH 881 Query: 630 DEIVCET-PDTDEFNASMLYHLMTSNPSWA--KGLPLKAE-GY 668 DE++ E D ++ ++M +PL + G+ Sbjct: 882 DELIFEVNKDALNETTEVVRNIMEKASEPVVKLDVPLVVDAGF 924 >gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1] gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1] Length = 917 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 111/653 (16%), Positives = 200/653 (30%), Gaps = 147/653 (22%) Query: 41 PVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-I 94 PV +P+ LK LEN V + ++ VL N DI ++ Sbjct: 374 PVAHRGPDAPEQLPRDEVLAKLKPWLENPARKKVGQHLKYDAQVLA---NYDIALNGVEH 430 Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 TL+ + AL+ K + +++ + + A Sbjct: 431 DTLLESYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAQQ----------IGFDEVAL 480 Query: 155 RLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVAL 203 + Y D +T ++ + + P + E + ++ + + G +D Sbjct: 481 DVAAAYAAEDADITLQLHRVMYPQVEREAGLKRVYTEIELPVSFVLRKMERTGVLIDSGR 540 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTC 259 ++ + V +L++E +L G + +++ F + L + +T Sbjct: 541 LEAQSREIAVRLVELEREAYALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + VL + P + +R G S+ Sbjct: 600 EEVLQKLAEDYPLPKLLLEHR-------------------------------GLSKLKST 628 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374 P R H Q + ++DP+ I +R IA+ G Sbjct: 629 YTDKLPRMINASTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIAAPGC 688 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 K+V AD + IE R++A ++G++ L+AF GED++ T A F V P +V+ DQR I KV Sbjct: 689 KIVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEVFGVTPLEVSTDQRRIAKV 748 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + L Y A +AS G+ + + A + N+ + + Sbjct: 749 INFGLIYGMSAF---GLASNLGITRDAAKLYIDRYFAR--YPGVANYMETTRASAKAQGY 803 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + G + + +A G A K + + Sbjct: 804 VETVFGRRL-----WLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAV------ 852 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 L RD L M Sbjct: 853 DGWLE-----------------------------------------------RDGLRSRM 865 Query: 615 MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + + VHDE+V E PD + L +M+ +PL AE Sbjct: 866 I----------MQVHDELVLEVPDAELALVREKLPEMMSGVAK--LKVPLVAE 906 >gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 893 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 111/663 (16%), Positives = 207/663 (31%), Gaps = 141/663 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + F + V + ++ + LK +EN + N + + K L + + Sbjct: 347 MIGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQLVLFKR---LGLAL 403 Query: 91 HRWICTLVLARSNGLPSALKAVGEALK------LSSQKMEEGKELIARFCKGETHECLYD 144 +L A V L L+ + GK A+F L Sbjct: 404 KGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKG--AKFAVPTDTNLLLS 461 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + + + + + ++ + E L ++ + +G V+ Sbjct: 462 -HIAHKADGLFKLEKPA----FTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYL 516 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + ER Q + G + ++L LF + GL + T+T + Sbjct: 517 RNKGK-DLYERIADIQSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVD 575 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 +KL PQA V LQ+ ++ Sbjct: 576 VLEKLAPQAPIVD----------------------------HILQYRQLAKLKSTYIDGL 607 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVV 378 P+ S+ H Q +T + DP+ I +R+ + S ++ Sbjct: 608 LSVIYPKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFG 667 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMEL 437 AD + IE RVLA + G++ KAF GED++ T F +A V +R K + Sbjct: 668 ADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNF 727 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y +A+ G++ + T +++ WM A E Sbjct: 728 GIVYGISDY---GLANNLGISRAEAKRFIDT-----YFQEFPQIHEWM-NTIKTFAHEHG 778 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 ++ T IA +RR +P + K Sbjct: 779 YVET-------------------------------------IAHRRRYLPDIQAKNF--- 798 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + RS R+ +N+ +Q + DI+ M+ Sbjct: 799 ------NLRSFA------ERTAMNSP------------------IQGSAADIIKIAMIKV 828 Query: 618 TKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670 +A ++L VHDE++ ETP + + + +M S A +PLK + + Sbjct: 829 NEALRKNNLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHG 886 Query: 671 KRY 673 + Sbjct: 887 DTW 889 >gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149] gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149] Length = 933 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 101/659 (15%), Positives = 183/659 (27%), Gaps = 156/659 (23%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D MP ++LK LE+ + + N ++ + PI + + A Sbjct: 396 DLAEG-QMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQVGITVAPIDDTML-MSYA 453 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 GL + + K L+ T + + Y Sbjct: 454 MHGGL-HGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKV----------PLNDAVPY 502 Query: 161 CKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++++ +P + E+ + + + G VD ++ Sbjct: 503 AAEDADVTLRLWQQFKPALHRAQVTRVYETLERPMVAVLADMERAGIKVDRDTLSRMSNA 562 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ +L G + ++L LF E GL +T T VL Sbjct: 563 FSQKMAALEDEIYTL-VGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDL 621 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 ++ + R S+ Sbjct: 622 ATEHELPRRILDWRQL-------------------------------SKLKSTYTDALQD 650 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H ++DP+ I +R +A EGK LV D Sbjct: 651 HINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGKTLVALDY 710 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA +A AF+ G+D++ T + F+V ++T + R K + + Y Sbjct: 711 SQIELRILAHIADIPALKAAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + +A+ F E P I T Sbjct: 771 GISGFGLARNLRI-------------------PRSEAQGFIDRYFERFP--GIRTYMDDT 809 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 KA+ ++H V L+ Sbjct: 810 ------KAFAKEHGYVETLF---------------------------------------- 823 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 GR + ++G R +Q + D++ M+ A Sbjct: 824 ---GRRIHTPNIGAKGPQAGFAAR----------AAINAPIQGTAADVIRRAMIRMPAAI 870 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673 ++L VHDE++ E + +M S + L + E + Sbjct: 871 VDLPAKMLLQVHDELLFEVDQGSQGALIDAARSVMESAADPVVHLDVKLTVDAGEGPNW 929 >gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] Length = 931 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 104/643 (16%), Positives = 200/643 (31%), Gaps = 157/643 (24%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-- 108 ++ Q L+ E+ + N ++ ++ +A I + +LA P A Sbjct: 408 ELVKQSLQPLWEDPNRPKSLQNCKYDLSIFRAH---GIRLQGIQFDPMLASYVLDPEASH 464 Query: 109 --LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD-- 164 L L + +++ L + + EYC D Sbjct: 465 NLADLAATHLNLPT----------------TSYKKLLGKEQSIADIPISKVAEYCGTDAY 508 Query: 165 -----VTVTREIFKRLEPLS-----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 V + E ++ +P E L + + + G VD +Q ++ E Sbjct: 509 CAYRLVPILTEKLQKTDPRLWDLFIQVELPLAQVLEEMEWIGIRVDTEFLRQFSQELEQE 568 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKL 269 L+Q+ + G + ++L + LF + L + +T T VL + Sbjct: 569 LQSLEQKAYAQA-GETFNLNSPKQLGSLLFEKLKLDIRKTRKTATGYSTDASVLEKLEGD 627 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + +Q+ ++ P Sbjct: 628 HPL-------------------------------IETIVQYRTLAKLKSTYVDALPALVR 656 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384 R H + +Q +T +S+P+ I S +R I EG L AD + I Sbjct: 657 SDTGRVHTDFNQTVTATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQEGWLLTAADYSQI 716 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++ E L+ F +GED++ T + ++T ++R + K + + Y G Sbjct: 717 ELRILAHLSQEPALLEGFRSGEDVHTLTARLL--LEKQEITSEERRLAKTINYGVIYGMG 774 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A Q+ A T G++L+ ++ + E + + R + +H + +G Sbjct: 775 A---QRFARTAGVSLSEAKQFLQRFN--ERYAGIFAYLRSTEAFVEKHGYVETILGR--- 826 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 R+ +S Sbjct: 827 ------RRYFPNLS---------------------------------------------- 834 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624 R +R R+ +N + G ++ I A+ R + Sbjct: 835 -RLTGHRKQAELRAAVNAPIQ---------GSASDIIKVAMVRLRQK-----LQNFRSRL 879 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 +L VHDE+V E ++ L M +PL + Sbjct: 880 LLQVHDELVFEVDPSEWQALKPLIQREMEGAVP--LSIPLVVD 920 >gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199] gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199] Length = 943 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 105/565 (18%), Positives = 187/565 (33%), Gaps = 82/565 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GL-PSALKAVG 113 LK+ LEN V +AHN+ ++ VL N I + T+ L+ GL L + Sbjct: 414 LKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCLSYVLEGGLHGHGLDELA 473 Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L ++ K EE C + Y D VT + Sbjct: 474 TLHLGHTNIKFEEV-------CGKGKTQIG------FAEAPIDKACAYAAEDADVTFRLH 520 Query: 173 KRLEP--LSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L+P + + E+ L + + G VD + ++ L+ E+ Sbjct: 521 ALLKPRLVPERMTTVYETLERALIPVLVGMERNGIKVDPTILRDMSADFAKRLVTLEGEI 580 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 G + ++L LF + GL +T T VL + + Sbjct: 581 HEQA-GEPFNVGSPKQLGEILFDKMGLAGGKKGKTGAYGTGADVLETLAAEGSDFARKVL 639 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + ++ + LVE +N++ R H Sbjct: 640 DWRQIAKLKSTYTDALVETINAE------------------------------TGRVHTS 669 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + ++DP+ I +R+ +A G L+ D + IE R++A +A Sbjct: 670 YSMVGAATGRLSSNDPNLQNIPIRTEEGRKIRTAFVAEPGNVLLSVDYSQIELRLVADIA 729 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G + KAF G D++ T + F V +++T D R K + + Y + Sbjct: 730 GIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINFGIIYGISGFGLARQ-- 787 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L+ + N+ E + ++ M+ EH + G +A R K Sbjct: 788 ---LSTSQAEAQAYINAYFERFPGIRDYMTEMKTFAREHGFVETKFGRKVH--IQAIRDK 842 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRD 572 + + +A G A KR V L V + K ++ ++L L++ Sbjct: 843 NPAMRNF---GERAAINAPIQGTAADVIKRAMVRLPVALDKAQSKARMLLQVHDELLFEV 899 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKL 597 ++ T L RE G Sbjct: 900 PEDDVEA----TSALVREVMEGAAA 920 >gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M] gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M] Length = 913 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 114/649 (17%), Positives = 199/649 (30%), Gaps = 144/649 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 D PV+ D V+ LK LE+ + V + ++ VL + TL+ Sbjct: 377 DAPVQ---LPRDEVL-AKLKPWLESAEHKKVGQHLKYDEQVLANYGIEMRGVE--HDTLL 430 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + AL+ K + +++ + + A Sbjct: 431 QSYVLESHRPHDMDNLALRHLGIKTIKYEDVAGKGAQQ----------IGFDEVALDKAA 480 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207 EY D +T + + L P + E+ L ++ + I G +D Sbjct: 481 EYAAEDADITLRLHQTLYPQLAAEETLEHVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQ 540 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263 + + +L+ E L G + +++ F L + +T + VL Sbjct: 541 SSEIATRLIQLESEAYVLAGG-EFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVL 599 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + +R G S+ Sbjct: 600 QKLAEDYPLPKILLEHR-------------------------------GLSKLKSTYTDK 628 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P R H Q + ++DP+ I +R IA G KLV Sbjct: 629 LPRMVNANTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ L+AF GED++ T A F+V P +V+ DQR + KV+ Sbjct: 689 ADYSQIELRIMAHISGDESLLRAFSEGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFG 748 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y + +AS G+ + + + R+M E A + Sbjct: 749 LIYGMSSF---GLASNLGITRDAAKLYID-----RYFARYPGVARYMDETRL-SAKAKGY 799 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + T R + + + +A G A K + Sbjct: 800 VETVFGR-RLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMI------------ 846 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 ++ E G ++ I+Q Sbjct: 847 ------------------------AVQKWIEESNIGTRM---IMQ--------------- 864 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 VHDE++ E PD + + L LM A +PL AE Sbjct: 865 ---------VHDELILEVPDEELSDVRKRLPELMCGVA--ALKVPLVAE 902 >gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53] gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53] Length = 936 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 100/648 (15%), Positives = 183/648 (28%), Gaps = 167/648 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSALK 110 LK LE+ + + N ++ + A + + + A GL + + Sbjct: 409 LKPVLEDASILKIGQNMKYDAKIF-ALLGIAVAPIDDTMLMSYAMHAGLHNHGMDTLSER 467 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +G + GK I R +Y D VT Sbjct: 468 YLGHIPIPIKPLLGSGKSAI-----------------TFDRVPVDDAVKYAAEDADVTLR 510 Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +++ +P + E+ L + + G VD ++ + L+ Sbjct: 511 LWQMFKPQLHQSRVTTVYETLERPLVPVLAQMEMHGIKVDRDTLSRMSNAFAQKMAGLED 570 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTET----TCQRVLSSNKKLTP 271 E++ + G + ++L LF E GL + D +T T VL + Sbjct: 571 EIQKMA-GRPFNVGSPKQLGEILFDELGLAMPDGKLPAKGKTGAYSTGADVLEDLATIHD 629 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R A + P Sbjct: 630 LPRRILDWRQLA-------------------------------KLKSTYTDALQDHINPD 658 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 R H ++DP+ I +R +A+ G +V D + IE Sbjct: 659 TGRVHTSYSIAGAITGRLASTDPNLQNIPVRSDEGRRIREAFVAAPGNVIVSLDYSQIEL 718 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA +AG +AF G D++ T + F+V Q+T D R K + + Y Sbjct: 719 RILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAINFGVIYGISGF 778 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + DA+ F E P Sbjct: 779 GLARNLRI-------------------PRSDAQGFIDRYFERFP---------------- 803 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 RQ AR R V ++ ++ + P Sbjct: 804 --GIRQYMDDTVAF-------------------ARDRGYVQTLFGRR------INTPEIN 836 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622 + + R+ +N +Q + D++ M+ KA Sbjct: 837 TKGPQAGFAKRAAINAP------------------IQGTAADVIRRAMIRMPKAIAGLPA 878 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E T + + +M + A + L + Sbjct: 879 KMLLQVHDELLFEVDATAADDLIGIARQVMETASDPAVKLDVKLSVDA 926 >gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1] gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1] Length = 903 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 106/635 (16%), Positives = 201/635 (31%), Gaps = 135/635 (21%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 P L L N ++T AHN+ + ++ + I +L+ Sbjct: 378 MFVSEGHPG-LIALLTNKNITKTAHNAKY---LMNLLASAGQEIQGLDFDTMLSAHLLGE 433 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 L + ++ + + + + + + + KG Sbjct: 434 KNLGIKDLVFEHFGVEIADVENI---LTQNGKKKSFSASELSEAAQLVADYTFRLKGLFA 490 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++ + E L + + G +D L + + V + KL++ + + Sbjct: 491 AQLAETNLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA 550 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF E L + T+T VL K + RM Sbjct: 551 -GHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRML- 608 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + P P R H +Q Sbjct: 609 ------------------------------VKLKSTYLDTLPRMVNPHTRRLHTSFNQTR 638 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +S+P+ I +R IA +G ++ D + I+ RVLA ++G+ Sbjct: 639 TATGRLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPAL 698 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF +D++ T AR N+ P++VTK+QR + K + + Y + ++ T L+ Sbjct: 699 IEAFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQ---ATELS 755 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L ++ KA+ +K+ RV+ Sbjct: 756 LAEA-----------------------------------------DKFIKAYFEKYPRVA 774 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + E+ + +RR +P + Sbjct: 775 IYFAEIKHQART--NGYVETLLGRRRYIPEI----------------------------- 803 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 N+ R + RE VQ S DI+ M+ K ++L VHDE+ Sbjct: 804 --NSPNR-ILRESAER-MAINMPVQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDEL 859 Query: 633 VCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666 + E PD + +++L M+ + +PLK E Sbjct: 860 IFEVPDAELKRMSALLMETMSGAVT--FEIPLKVE 892 >gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] Length = 940 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 121/689 (17%), Positives = 215/689 (31%), Gaps = 151/689 (21%) Query: 7 DFETRS--PIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 D ET S P D T G+ E+ + A + PV+ D V L Sbjct: 361 DTETTSLHPEDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQ---LAKDDVF-AKLAPVFA 416 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 + + + HN F+ VL L + T+++A + A K S K Sbjct: 417 DPKIKKIGHNVKFDLLVLY-FAGLSAVKGVYADTMLMAHLLDSVQSCALDNLAEKYLSYK 475 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----- 177 + ++ K T + + + Y D V +F L P Sbjct: 476 TIKYSDVAGSGSKSVTFDNVPV----------DIACAYSGEDSEVALRLFNVLLPKIKDE 525 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L + E + + G V + +++ E + +++ + G Sbjct: 526 GKANDILFNLEMPCLSVLFDMERVGALVSADELYRQTEVLKSELQAVQKDIYA-AAGQEF 584 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L LF + + N + + + ++ Sbjct: 585 NIASPKQLGNVLFESLAIPYPKKVKVDKNG----------------NKQYSTAEDVLTEI 628 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + + N R R + +G P R R H +Q T + Sbjct: 629 APMYDIANLVLRFRSVSKLIG------TYTEKLPLLISKRTGRIHTSFNQAGTTTGRLSS 682 Query: 352 SDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I + +R IA +G LV AD + IE R++A +A + +KAF+ G Sbjct: 683 SDPNLQNIPARTHEGKLIRKAFIAPQGYTLVSADYSQIELRLIAHIAKDPNLIKAFKLGY 742 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A +VT ++R+ K L Y GA +++ TGL+ Sbjct: 743 DIHKATAAEVLGKDINEVTGEERSRAKATNFGLMYGMGA---HGLSAQTGLSFKA----- 794 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 A+ + +P+ R + + + Sbjct: 795 -----------AKAYIDCYFTRYPK------------------IRDYMDSIKKFAH--EH 823 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-GNNRSYLNTTTR 585 + +TI + + P S V G R+ +N Sbjct: 824 GYVETILGRR-----------------------IDFPGINSTNRIAVTGAERAAINAPM- 859 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPD 638 Q + DI+ M+ K ++L VHDE+V E + Sbjct: 860 -----------------QGSAADIIKIAMIAIEKWITSLPADTVRMILQVHDELVFEVKN 902 Query: 639 T--DEFNASMLYHLMTSNPSWAKGLPLKA 665 DE A + LM + + +PL A Sbjct: 903 EFLDEATAK-IKELMENAVT--LDVPLLA 928 >gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265] gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265] Length = 940 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 92/547 (16%), Positives = 166/547 (30%), Gaps = 77/547 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++L+ LEN + N ++ VLK N + + +LA P Sbjct: 414 ELLRPLLENPAIAKTGQNLKYDLLVLK---NYGLELSPISFDTMLASYLLNPE------T 464 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L K R K + R +Y D + + Sbjct: 465 THNLDDLAARHLK---LRTTKYDELTGTGKTKLHIDDVEPRKLTDYACQDADIALRLTAI 521 Query: 175 LEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+ ++E L ++ + + +G +D ++ V + +L + + Sbjct: 522 LQKELAEEPNLRHIGETLEFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQLKETIH 581 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNR 280 S G + ++L LF GL + T+T VL L P + R Sbjct: 582 S-AAGESFNIDSPKQLSRILFEVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVGNLLEYR 640 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + P PR R H + Sbjct: 641 SL-------------------------------QKIKTTYIDALPKMLNPRTGRVHTSFN 669 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAG 394 Q IT +S+P+ I + +R I L+ AD + IE R+ A ++G Sbjct: 670 QHITATGRLSSSNPNLQNIPIRTPLGREIRKAFIPTDPRNLLLSADYSQIELRIAAEISG 729 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + ++AF ED++ T F+ +T D R K + + Y ++ Sbjct: 730 DGKLIEAFRNREDIHSATARVIFDTP--DITPDMRRKAKEVNFGVLYGIQPF---GLSKR 784 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + + A ++ T +A + E F+ T R ++ Sbjct: 785 LNIPRSEAADIISTYTAKYP------GLFEALDTIKTTGREKGFVTTLLGR-RRYLPNLS 837 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDV 573 SR L +A T G A K + K+ + ++L LV+ Sbjct: 838 SRNGNLQKAAERAAMNTPIQGTAADIIKCAMILCSKRMKEHDMQSSMLLQVHDELVFETT 897 Query: 574 GNNRSYL 580 + L Sbjct: 898 PEEQENL 904 >gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] Length = 900 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 107/634 (16%), Positives = 194/634 (30%), Gaps = 143/634 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + +AL D+ V H + + K + I LA P+ E Sbjct: 376 QVLQALFAPDIQKVVHGAK---ELEKELMDQGIEPQGIRFDTELAAYLLSPTDGSYDLEK 432 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKR 174 L ++ +E + G ++ F +C + E + +R Sbjct: 433 LGITYY-NQEFAKAKEYLTPGAFDSLFSLDSEGQSAGPMGAFLSHCAL-IDALYETLSQR 490 Query: 175 LEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 LE L E L + + G VD + + K + L G Sbjct: 491 LEELKLTQLYGEIELPLCPVLAEMERSGVLVDRKALAAFGEALAQGIEKDQALIYELA-G 549 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL T+T VL + P + + R Sbjct: 550 EEFNINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGKHPIIEAILDYRQLTKL 609 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + G++ + R H +T Sbjct: 610 KSTY--------ADGLGKV------------------------IAPDGRIHTCFQNTVTA 637 Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I + +R +A+ GK LV AD + IE R+LA MAG+Q ++ Sbjct: 638 TGRLSSTEPNLQNIPIRTQLGAQLREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIE 697 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F +G D++ T ++ F V P QVT R K + + Y + + Sbjct: 698 GFHSGADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGIVYGISPFSLSQD--------- 748 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 IG + ++ K+ + + S + Sbjct: 749 --------------------------------------IGVSVQQAKEYMDKYFAHYSGV 770 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + EQ ++G RR LP +S + Sbjct: 771 RAYMDGVVEQGKQDGYVATLFGRR---------------RWLPELKSSNFN--------- 806 Query: 581 NTTTRQLTREYTYGGKLTENI-VQAVSRDILAEGMMNATKAGYD------IVLTVHDEIV 633 ++G ++ N+ +Q + DI+ M+ +VL VHDE++ Sbjct: 807 ---------TRSFGERVALNMPIQGTAADIIKLAMIRVRDRLLREGLEGRLVLQVHDELI 857 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 E P+ + ++ M +PL AE Sbjct: 858 VECPEAEAETVCRLVKEEMEGVCQ--LSIPLLAE 889 >gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] Length = 899 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 95/559 (16%), Positives = 170/559 (30%), Gaps = 86/559 (15%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCVHDPVMPQ--------V 56 +D ET S L +A+ V + A+ D+ H PQ Sbjct: 323 LDTETTSLDPL-------HADLVGIS-CAWQAGGDYQAVYVPVGHRDAGPQLDRQTVLTA 374 Query: 57 LKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 L+ LE+ +A N+ ++ R + + + + S+ L + E Sbjct: 375 LRPWLEDPQAAKLAQNAKYDWRVFWRHGIHPAGLARDTLLESYVLNSSHNGHDLDTLAE- 433 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + +E++ + RN + A L Y D V + L Sbjct: 434 -RYLQHQNIRYEEVVGK--------GKSARNFADVPVAEAL--PYAAEDADVCLRVDALL 482 Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P L E L + + + G +D A L+ + + +Q+ Sbjct: 483 WPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEVLSTELSRDMADCEQKAFV 542 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLTPQAIQVFNNRMRA 283 L G + ++++ LF + L + T +L A Sbjct: 543 LA-GQSFNLNSPKQIQEILFDKMRLPVLKKTPGGQPSTNEDVLAQLAVHADLP------- 594 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R L + G ++ P P R H Q + Sbjct: 595 ---------------------RLILDYRGMAKLKNTYADALPQMINPDTGRVHTHFQQAV 633 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I +R +A EG L+ AD + IE R+LA ++G+ Sbjct: 634 AATGRLSSNDPNLQNIPVRTEQGRRIRQAFVAEEGHWLLSADYSQIELRILAHLSGDARL 693 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 L+AF GED++ T A F++AP V R K + L Y +A G++ Sbjct: 694 LQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRAAKAINFGLIYGQTPY---GLAQQLGID 750 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + E + + + + + G R + Sbjct: 751 QAAARQYMD--RYFERYLGVLEYMAQTRALAKKQGYVETLFGRRL--YVPEIRSSNPARR 806 Query: 519 ELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 807 T---YAERAAINAPMQGTA 822 >gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5] gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5] Length = 915 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 114/674 (16%), Positives = 198/674 (29%), Gaps = 162/674 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP-----QVLKEALENTDV 66 ID G+ ++ + H P +P + L L + + Sbjct: 344 IDTETTGLNP--RHAKLVGISVATAPGRAAYVPLGHEDGPQLPRPLALERLAPVLADPSI 401 Query: 67 TIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 + HN+ F+ VL+ P+ T++++ + G + E L Sbjct: 402 LKIFHNAKFDLHVLERAGLADATPVD---DTMLMSYTLGAGRHGHGMDELSALHLDH--- 455 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------L 175 R + Y D VT ++ L Sbjct: 456 ------RPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRPRLRTEAAL 509 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + E+ L + + G VD A +++ + +E+E L G + Sbjct: 510 ALYETMERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREIEKLA-GRAFNPGS 568 Query: 236 LEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLK 290 ++L LF E GL T+T T VL ++V R + Sbjct: 569 PKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRVLEWRQLQKLKSTYA 628 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + E +D R+ + Q IT Sbjct: 629 DALVGEIDIADQRVHTSFS-------------------------------QAITTTGRLS 657 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +++P+ I +R IA+ GK L+ AD + IE R+LA +A ++F G Sbjct: 658 SNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKG 717 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T A F + + R K + + Y A +A G+ + Sbjct: 718 EDIHARTAAEVFGLPMEGMDPMVRRRAKAINFGIIYGISAF---GLARQLGIENSEA--- 771 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 K+ +R E+ ++ Sbjct: 772 -----------------------------------------KRFIDAYFARYPEIRRYMN 790 Query: 526 QAFEQTIENGKAIIA-RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + E +G + +R VP + K P+ R R +N Sbjct: 791 ETAEFARTHGYVLTPFGRRCYVPGITEKN---------PARRGYA------ERQAINAPL 835 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--IVLTVHDEIVCETP- 637 Q + DI+ M+ AG D ++L VHDE+V E P Sbjct: 836 ------------------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHDELVFEAPK 877 Query: 638 DTDEFNASMLYHLM 651 D E A + +M Sbjct: 878 DQAEATAKLACAVM 891 >gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62] gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62] Length = 932 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 102/643 (15%), Positives = 181/643 (28%), Gaps = 150/643 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK L++ + + N ++ + C PI + + A++ GL + Sbjct: 410 LKPMLQDDSILKIGQNMKYDAKIFARCGVDVAPIDDTML-MSYAQNAGL-HNHGMDTLSD 467 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +L K L+ R +Y D +T +++ L+ Sbjct: 468 RLLGHTPIPIKSLL----------GTGKSAITFDRVDVAEAVKYAAEDADITLRLWQHLK 517 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P E+ L + + G VD ++ + L+ E+ L Sbjct: 518 PQLHVKGVTTVYETLERPLVPVLAEMEMTGIKVDRDTLSRMSNAFAQKMAGLEAEIHELA 577 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF E G+ +T T VL +V + R Sbjct: 578 -GRSFNVGSPKQLGEILFDEMGIEGGKKGKTGAYATGADVLEDLAIEHELPGRVLDWRQL 636 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ R H Sbjct: 637 -------------------------------SKLKSTYTDALQNHINAETGRVHTSYSIA 665 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + ++DP+ I +R IA EGK LV D + IE R+LA +A Sbjct: 666 GANTGRLASTDPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVADIPS 725 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G D++ T + F+V Q+T D R K + + Y + Sbjct: 726 LKQAFADGMDIHAMTASEMFDVPLDQMTSDIRRQAKAINFGVIYGISGFGLARNLRI--- 782 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 +A+ F E P I T + ++H V Sbjct: 783 ----------------PRFEAQGFIDRYFERFP--GIRTYMDDTVA------FAKEHGYV 818 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 L+ GR + ++G Sbjct: 819 QTLF-------------------------------------------GRKINTPEIGAKG 835 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----IVLTVHDEIV 633 R +Q + D++ M+ A D ++L VHDE++ Sbjct: 836 PQAGFAKR----------AAINAPIQGTAADVIRRAMVRMPDAIADQPAKMLLQVHDELL 885 Query: 634 CETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673 E + + +M + A + L A+ E + + Sbjct: 886 FEVENGAQEKLIETARDVMENAAMPAVKLDVTLTADAGEGQNW 928 >gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72] gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72] Length = 918 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 121/694 (17%), Positives = 203/694 (29%), Gaps = 174/694 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL---------KEALENT 64 D + + ++ +F H +PQ L K LE+ Sbjct: 346 DTETTSLDPMS--ARLVGMSFALAQGEAAYLPLAHRGTDVPQQLPLDEVLARLKPWLESD 403 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + N ++ VL N I + +L E+ L S K Sbjct: 404 RHAKLGQNLKYDAHVL---LNHGIRLGGITHDTLL--------------ESYVLESDKPH 446 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-----VTREIFKRLEPLS 179 + L R T K + + C VT + + L P Sbjct: 447 DMDSLAKRHLGLTTIPYTEVCGKGAKQIGFDEVALDCAAAYAAEDADVTLRLHETLWPQV 506 Query: 180 SK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E + + G +D L + + L+ E L G Sbjct: 507 EALPRLAALYRDVELPTLQVLFEMERTGVLIDPFLLAQHGEELGRRLLGLEAEAHVLA-G 565 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + L + T T T + VL+ + P + +R A Sbjct: 566 QPFNLGSPKQLGEILFGKLALPVLKKTATGQPSTDEDVLTQLAEDYPLPKLLLEHRSLA- 624 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P P+ R H Q Sbjct: 625 ------------------------------KLKSTYADKLPRMVNPKTGRVHTCFSQATA 654 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R+ IA +V AD + IE R++A ++G+ L Sbjct: 655 VTGRLASTDPNLQNIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLL 714 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A F VAP++V+ +QR KV+ L Y A +A G+ Sbjct: 715 EAFAEGEDVHRATAAEVFGVAPSEVSSEQRRYAKVINFGLIYGMSA---HGLAKNLGIER 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+ + +P + ER+K Sbjct: 772 GA----------------AQAWIDRYFARYP-------GVADYMERIKA----------- 797 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +T+ + L LP R+ Sbjct: 798 --EAKDKGYVETVFGRR-----------------------LHLPDIRA------------ 820 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIV 633 +Q R +Q + D++ + M + A+ +VL VHDE+V Sbjct: 821 -----QQAGRRQAAERAAINAPMQGTAADLIKKAMIAVSGWLRASGLKSRLVLQVHDELV 875 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 E P + + L LM A +PL E Sbjct: 876 LEVPVAEVETLRAALPGLMGGVA--ALSVPLLVE 907 >gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] Length = 891 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 102/621 (16%), Positives = 201/621 (32%), Gaps = 136/621 (21%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAV 112 K LE+ D+ +N + L +I + + +A ++ + Sbjct: 368 DFKAVLESKDIKKYGYNMKEDYVAL---MPYEIALKGMSFDIAIAEYLIDSTSTNTSECG 424 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A+K + ++ +EL+ + K + E L + + + E Sbjct: 425 AIAMKYLMKSVKSKEELLGKGVKAKKFEDLTKEELSGYISSILNTVVNAMPKMKEEIE-S 483 Query: 173 KRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 ++E L E L + + G VD + L + + L++E+ G Sbjct: 484 TKIEKLFDDVEMPLVEVLGNMEYTGIKVDKEMLDELGKEFTKIISSLEEEIYGYA-GEEF 542 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF + L + T+T VL K P ++ R Sbjct: 543 NINSPKQLGVILFEKLELPVIKKTKTGYSTNAEVLEKLKDKHPIIDKIGEYRQ------- 595 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + P R H +Q IT Sbjct: 596 ------------------------IVKLNSTYVEGLTALINPIDGRIHSTFNQTITTTGR 631 Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I I +R+ ++ + K+LV AD + +E RVLA M+G+Q + AF+ Sbjct: 632 ISSTEPNLQNIPVRMEIGRRLRAVFVSDDEKRLVDADYSQVELRVLAHMSGDQNMIDAFK 691 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ T ++ FNV +VT + R+ K + + Y + GL+ + Sbjct: 692 HGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIYGK---------TDFGLSED--- 739 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + K+ ++ ++ Sbjct: 740 -----------------------------------LNIPVPQAKQYIESYFAKYEKIKEF 764 Query: 524 LHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + E ++G + +RR +P + K KN + R+ +N Sbjct: 765 MDNIIETAEKDGYSQTMFNRRRYIPEI---KSKNFMERN------------RGKRAAMNA 809 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 +Q + DI+ M+N + ++L VHDE++ ET Sbjct: 810 P------------------IQGSAADIIKIAMVNVFRRLEKEELRSKLILQVHDELIVET 851 Query: 637 PDTDEFNASMLY-HLMTSNPS 656 P + + M + Sbjct: 852 PIDELEKVEKIVREEMENAVD 872 >gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 929 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 106/628 (16%), Positives = 187/628 (29%), Gaps = 158/628 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113 LK EN + + N ++ +L N I + ++A P + + Sbjct: 405 LKPFFENESILKIGQNLKYDFKILA---NYGIEVKGEFFDTMIAHYLLNPDMRHNMDLLS 461 Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 EA L S +E LI + KG+ L EY D VT ++ Sbjct: 462 EAYLGYSPISIET---LIGKKGKGQ---------LTMRAVPAELQKEYAVEDTDVTLQLK 509 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 PL K E L + + G VD L++ + + L++ + Sbjct: 510 HVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTHFLAQLSKEIAADLIGLEKTI 569 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVF 277 S + ++L LF + L + T + VLS V Sbjct: 570 FSQA-EESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASKHEIVANVL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 F + P + P R H Sbjct: 629 E-------------------------------FRALQKLQSTYIEALPREVNPHTGRIHT 657 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 Q +T ++ P+ I +R + E L+ AD + IE R++A Sbjct: 658 TFMQAVTATGRLSSNQPNLQNIPIRTPRGSQIRKAFVPRNEDYTLLSADYSQIELRIIAA 717 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ E ++AF G+D++ +T A+ F V VTK+QR+ K + + Y A Sbjct: 718 LSEEDHMIEAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSA------ 771 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 GL+ T ++ + + + E Sbjct: 772 ---IGLSQQTSLSRSQSKELIDTYYQTYPKLKTYIEK----------------------- 805 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ + QTI +RR +P VY + Sbjct: 806 -------QIFFAREHGYVQTI-------LGRRRYLPDVYSR------------------- 832 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625 N R +Q + DI+ M+ ++ Sbjct: 833 ---------NQVVRGAAERNA-----VNAPIQGSAADIIKIAMVRIAQRIQKEGLATRML 878 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMT 652 L VHDE++ + P + E +++ M Sbjct: 879 LQVHDELLFDVPKKELEVAKALIREEME 906 >gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5] Length = 780 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 153/474 (32%), Gaps = 73/474 (15%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSY 74 A+ ++ +F H H + + LK LE+ D T V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERTVLKACF-----NLDIPIHRWICTLVLARS--NGLPSALKAVGEALKLSSQKMEEGK 127 F +L C I + +L + + K + + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQ 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------LEP 177 E+ + K + + + A G Y + +T + + L+P Sbjct: 467 EIAGKGAKQLSFDQI----------ALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516 Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ E L + I +G VD L + + + T L++E ++ G + Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIA-GEEFNLGSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L L+ + G+ + T T + + + Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL--------------- 620 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +Q+ S+ P Q PR R H Q + +SDP+ Sbjct: 621 -----------MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNL 669 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A +G KL+ AD + IE R++A +A ++ L AF D++ Sbjct: 670 QNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 T A F V VT D R K + L Y A +A G++ Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAY 780 >gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS] gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS] Length = 950 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 98/544 (18%), Positives = 168/544 (30%), Gaps = 95/544 (17%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVG 113 LK LEN ++ N ++ VLK +++ +LA P A L + Sbjct: 426 LKPLLENPEIPKTGQNLKYDILVLKKY-GVELAPVG--FDTMLASYVLNPEARHNLDDMA 482 Query: 114 EALKLSSQKMEE------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 AL L Q + GK+ I F R +Y D + Sbjct: 483 -ALYLGRQTTKYTELVGTGKQTIGIF-----------------EVEPRKLSDYACQDADI 524 Query: 168 TREIFKRLEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERT 216 + LE K EL + + +G +D A L+ V E Sbjct: 525 ALRLRYSLEEQLEKTPELLEVCRKLEFPLVRVLADMEHKGISIDTAHLEQLSIKVTGELA 584 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQA 273 L + + T G + ++L LF L + T+T +VL L P A Sbjct: 585 TLTERIFEAT-GETFNIDSPKQLGHILFDVLKLPAKKATKTGYSTNVQVLEELAMLHPVA 643 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R + P P Sbjct: 644 SDLLEYRSL-------------------------------QKLKSTYIEALPKMINPLTG 672 Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEAR 387 R H +Q IT +S+P+ I + +R I S G L+ AD + IE R Sbjct: 673 RVHTSFNQSITATGRLSSSNPNLQNIPIRTELGKEIRRAFIPSNPGNLLLSADYSQIELR 732 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 + A ++G+ ++AF ED++ T F+ ++T D R K + + Y Sbjct: 733 IAAELSGDPMLIEAFRNHEDIHAATARVIFDT--KEITPDMRRKAKEVNFGVLYGIQPFG 790 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + G+ ++ T A + + + + E + +G + Sbjct: 791 LSQ---RLGIPQKEAKEIIDTYMAK--YPGMFSSLQTIIEEAKKKGYVTTLMGR-----R 840 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGR 566 + +S S + + T G A K + K ++L Sbjct: 841 RYVPDLNSANSNIRKAAERVTMNTPIQGTAADIIKFAMCSISRELKKGEFRSAMLLQVHD 900 Query: 567 SLVY 570 L++ Sbjct: 901 ELLF 904 >gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70] gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70] Length = 878 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 91/623 (14%), Positives = 193/623 (30%), Gaps = 135/623 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 LE+ + R ++ + I + L++A PS + + V K Sbjct: 363 LEDESKKKSVFDGK--RAIVSLKWQ-GIQLRGVQFDLLIASYLLNPSQSTEDVASIAKTK 419 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + E I + KG + + H + D + ++ + Sbjct: 420 QYTDVQSDEAI--YGKGAKQKIPDEPVLAEHLVRKAAAIRALEQDFICDLQENEQYSLFT 477 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +DV + + + + +++QE+ L G + ++L Sbjct: 478 DLELPLSSILAEMEFTGVKIDVKRLKEMGEELTEQLKEIEQEIYELA-GQEFNINSPKQL 536 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL ++ + R + + L++ Sbjct: 537 GVILFEKLQLPVLKKTKTGYSTSAEVLEKLAPQHEIVEKILHYRQL-GKLQSTYIEGLLK 595 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ D ++ H +Q +T +++P+ Sbjct: 596 VVHHD------------------------------TNKVHTIFNQALTQTGRLSSTEPNL 625 Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + SE + AD + IE RVLA +A ++ + AF D++ Sbjct: 626 QNIPIRLEEGRKIRQAFVPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHDLDIHT 685 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+V +VT + R K + + Y + + + +K Sbjct: 686 KTAMDIFHVNEDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLNITRKEASEFIKRYF 742 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + V + ++ Q +Q Sbjct: 743 -----------------------------------------EIFPGVKQYMKDIVQEAKQ 761 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + + +RR +P + + + RS R+ +NT Sbjct: 762 --KGYVTTLLHRRRYLPDITSRNF---------NLRSFA------ERTAMNTP------- 797 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ + M++ ++L VHDE++ E P + Sbjct: 798 -----------IQGSAADIIKKAMIDLSNRLKKENMKARMLLQVHDELILEAPKEEVERL 846 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 847 QQIVPEVMENAVQ--LRVPLKVD 867 >gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] Length = 874 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 175/550 (31%), Gaps = 87/550 (15%) Query: 61 LENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSA----LKAVGEA 115 L ++ +V H + L I LA PS L + Sbjct: 368 LLDSGARLVGH----DLKPLYNWLYSQGIEPPAPAFDTALAAYLLDPSRSSYDLADLCRQ 423 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L G+T + R R+ E V +++ Sbjct: 424 HGL------------GELPPGDTPDLWATRASVLPELHRRMEAELAAQGVD---RLYR-- 466 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 E L + + G +D A H ++ ++ ++ QE+ L G+ + Sbjct: 467 ----EVELPLMPILAEMEAVGVGIDPAALHEMSVELERRILQVSQEIYELA-GMQFNISS 521 Query: 236 LEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + GL T++ T VL P A +V + R + Sbjct: 522 PKQLGDVLFGKLGLPSGKKTKSGGYSTDAEVLEELAAAYPIAARVLDYR-----TLTKLK 576 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 T V+A+ Q + R R H Q + + Sbjct: 577 GTYVDALG---------------------------QLIARDGRIHTTFAQTVAETGRLSS 609 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 DP+ I +R +A G L+ AD + IE RV+A +G+ +AF + Sbjct: 610 KDPNLQNIPIRIEEGRRIRKAFVARPGCVLLSADYSQIELRVVAHFSGDPALREAFLHDQ 669 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A F V QVT + R K + L Y +A + G++ + Sbjct: 670 DIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLIYGQTDF---GLARSVGISRAEARAFI 726 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 +T A R E A E ++ T + ++ + + RV + + Sbjct: 727 ETYFAK------FAGVRRYMEEKKAEAREKGYVTT-LDGRRRPLPEINHRVFTIRQNAER 779 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 T G A KR + + +++ + ++L LV+ L Sbjct: 780 MAINTPIQGTAADLMKRAMIAVRRAMREEGLSARMILQVHDELVFECPVGEVDRL----A 835 Query: 586 QLTREYTYGG 595 +L R G Sbjct: 836 RLVRREMEGA 845 >gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 921 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 204/705 (28%), Gaps = 176/705 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VEL---WDCVHDPVMP- 54 L +D ET SP ++ +F + V + D Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393 Query: 55 QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--L 109 + ++E L ++ V V N ++ VL+ N ++ +LA P Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLE---NHGFILNNIQFDTMLASYVIQPEGRRH 450 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A L + +L+ + + EY D +T Sbjct: 451 NMDVLAKDLLNYDTITYDDLVG--------TGKKKKELTDIDP--EQVAEYAAEDADITF 500 Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ L + E L + + G +DV L + D E L+ Sbjct: 501 RLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHLE 560 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQV 276 E+ G + ++L+ LF + L T+T VL P ++ Sbjct: 561 SEIHKQA-GRSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPIVEKL 619 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + ++ P PR R H Sbjct: 620 L-------------------------------DYRKYTKLKSTYVDALPKMVNPRTGRIH 648 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390 +Q I ++DP+ I +R +++ D + IE R++A Sbjct: 649 TSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMA 708 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + L+A+ G D+++ T A + V +VT + R KV+ ++ Y + Sbjct: 709 HISKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSR 768 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 ++A++F +P Sbjct: 769 NLRI-------------------PRDEAKSFIERYMIQYP-------------------- 789 Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + + + E +NG + +RR + + Sbjct: 790 --------GVKSYMDSMVEFAEKNGYVQTLTGRRRLIVDINSTHKS-------------- 827 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD-- 623 R +N+ VQ S D++ M+N K Y Sbjct: 828 -AKEAAKRVAINSP------------------VQGTSADMIKIAMINIHEDIEKKHYRSR 868 Query: 624 IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEG 667 ++L VHDE+V E ++ + + M + LP+ EG Sbjct: 869 MLLQVHDELVFEVHKKEKEEFKISMKKHMENAMP--LDLPILVEG 911 >gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N] gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N] Length = 904 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 93/501 (18%), Positives = 154/501 (30%), Gaps = 73/501 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVG 113 + L+ LE+ + + H++ ++ V N I + T++ A + Sbjct: 383 ERLRGWLEDATRSKLLHHAKYDTHV---FANEGIALRGVTEDTMLQAYVLESHRGVGLND 439 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + + ++L + K A G Y D T ++ + Sbjct: 440 LAQRYLGRSGVNYEDLCGKGAKQ----------IGFDEVAVDRAGFYAAEDADFTLQLHQ 489 Query: 174 RLEPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L P + E E Y + I G VD + + E L+Q L Sbjct: 490 ALRPGVTGELERIYKLELEVSRVLVAIERNGVKVDAEELGRQSHELGREMLALEQRAYEL 549 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF GL + T +T + VLS + P + R Sbjct: 550 A-GQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLLEYR- 607 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G S+ P P R H Q Sbjct: 608 ------------------------------GLSKLKSTYTDKLPRMINPATGRVHTHYSQ 637 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +SDP+ I VR +A LV AD + IE R++A ++ + Sbjct: 638 AAVITGRLASSDPNLQNIPVRTLAGRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDA 697 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF GED++ T A F V +VT +QR K + L Y G +AS G Sbjct: 698 NLQRAFAAGEDIHRATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGVF---GLASNLG 754 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + A ++ A E ++ T R + + Sbjct: 755 ITRDAAQAYIDRYFARYP------GVARYMDDTRRLAREQGYVETVFGR-RLQLPDIRAA 807 Query: 517 VSELWNELHQAFEQTIENGKA 537 +A G A Sbjct: 808 SGPRRQGAERAAINAPMQGTA 828 >gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 921 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 204/705 (28%), Gaps = 176/705 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VEL---WDCVHDPVMP- 54 L +D ET SP ++ +F + V + D Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393 Query: 55 QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--L 109 + ++E L ++ V V N ++ VL+ N ++ +LA P Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLE---NHGFILNNIQFDTMLASYVIQPEGRRH 450 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A L + +L+ + + EY D +T Sbjct: 451 NMDVLAKDLLNYDTITYDDLVG--------TGKKKKELTDIDP--EQVAEYAAEDADITF 500 Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ L + E L + + G +DV L + D E L+ Sbjct: 501 RLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHLE 560 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQV 276 E+ G + ++L+ LF + L T+T VL P ++ Sbjct: 561 SEIHRQA-GRSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPIVEKL 619 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + ++ P PR R H Sbjct: 620 L-------------------------------DYRKYTKLKSTYVDALPKMVNPRTGRIH 648 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390 +Q I ++DP+ I +R +++ D + IE R++A Sbjct: 649 TSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMA 708 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + L+A+ G D+++ T A + V +VT + R KV+ ++ Y + Sbjct: 709 HISKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSR 768 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 ++A++F +P Sbjct: 769 NLRI-------------------PRDEAKSFIERYMIQYP-------------------- 789 Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 + + + E +NG + +RR + + Sbjct: 790 --------GVKSYMDSMVEFAEKNGYVQTLTGRRRPIVDINSTHKS-------------- 827 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD-- 623 R +N+ VQ S D++ M+N K Y Sbjct: 828 -AKEAAKRVAINSP------------------VQGTSADMIKIAMINIHEDIEKKHYRSR 868 Query: 624 IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEG 667 ++L VHDE+V E ++ + + M + LP+ EG Sbjct: 869 MLLQVHDELVFEVHKKEKEEFKISMKKHMENAMP--LDLPILVEG 911 >gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4] gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4] Length = 956 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 103/691 (14%), Positives = 198/691 (28%), Gaps = 176/691 (25%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQV------ 56 ID ET S Y ++ +F H H + + Sbjct: 364 IDTETTSV----------YWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLDRDT 413 Query: 57 ----LKEALENTDVTIVAHNSYFERTVLKAC-----FNLDIPIHRWICTLVLARSNGLPS 107 LK LEN+ + + + ++ +L N+ + W +LA + Sbjct: 414 VLVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 473 Query: 108 --ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 A + +++ + K + + + A + +Y D Sbjct: 474 VTRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQV----------AIDIASDYACEDA 523 Query: 166 TVTREIFKRLE-----------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 +T ++F+ L + E + + G + + L++ D E Sbjct: 524 DITYQLFELFSQKLADDTNNAKLLHALEIPTAEILCQMEAHGILIKRPFLNELSKRFDEE 583 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 L++ + G + ++L LF + G+ T+T S+ + + + Sbjct: 584 IIALEKRAYEVA-GEEFNLGSPKQLGEMLFDKLGVAGGKKTKTGQ---YSTGEAVLSKID 639 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP--RP 332 + TL++ G S+ N+ Sbjct: 640 HPL--------------------------VDITLEYRGLSKLKSTYTDA--LDNVADSET 671 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H Q +T ++DP+ I +R IA EG+ ++ AD + IE R Sbjct: 672 DRVHTSYHQALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELR 731 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 ++A +G++ AF G D++ T A A VT +R K + L Y A Sbjct: 732 LMAHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAINFGLLYGMSAF- 790 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 +A ++ + + ++D I T Sbjct: 791 --GLAKQLQMSRSEAQDYIDMY------------------FERYPGVKDYMINTRA---- 826 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + +TI K +V Sbjct: 827 --------------SAYEHGYVETILGRKLYTPDINHSNRMV------------------ 854 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YD 623 G R+ +N Q + D++ M+ K Sbjct: 855 ----KQGAERAAINAPL------------------QGSAADLIKLAMIAVDKVLPKHQAK 892 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654 ++L VHDE+V E + L+T Sbjct: 893 MLLQVHDELVFEVDAN---KVDEISQLITDA 920 >gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1] gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1] Length = 913 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 198/650 (30%), Gaps = 146/650 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 D PV+ D V+ LK LE+ + V + ++ VL I TL+ Sbjct: 377 DAPVQ---LPRDEVL-ARLKPWLESVEHKKVGQHLKYDEQVLANYGIEMRGIE--HDTLL 430 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + AL+ K + +E+ + A Sbjct: 431 QSYVVESHRTHDMDSLALRHLGVKTIKYEEVAGKGAGQ----------IGFDEVALDKAA 480 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207 EY D +T + + L P + E+ L Y+ I G +D Sbjct: 481 EYAAEDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQ 540 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263 + + +L+ E L G + +++ F + L + +T + VL Sbjct: 541 SSEIATRLIQLESEAYVLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVL 599 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + +R G S+ Sbjct: 600 QKLAEDFPLPKILLEHR-------------------------------GLSKLKSTYTDK 628 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P R H Q + ++DP+ I +R IA G KLV Sbjct: 629 LPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ L++F GED++ T A F+V P +V+ DQR + KV+ Sbjct: 689 ADYSQIELRIMAHISGDESLLRSFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFG 748 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y + +AS G+ + + + R+M E A + Sbjct: 749 LIYGMSSF---GLASNLGITRDAAKLYID-----RYFARYPGVARYMDETRV-SAKAKGY 799 Query: 499 IGTACERVKKAW-RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + T R + W + + +A G A K + Sbjct: 800 VETVFGR--RLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMI----------- 846 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 ++ E G ++ I+Q Sbjct: 847 -------------------------AVQKWIEESKIGTRM---IMQ-------------- 864 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 VHDE++ E PD + + L LM +PL AE Sbjct: 865 ----------VHDELILEVPDAELSDVRKRLPELMCGVAD--LKVPLVAE 902 >gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] Length = 1021 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 106/638 (16%), Positives = 188/638 (29%), Gaps = 144/638 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 + L+ LE+ V + N F +L I + +++ + A Sbjct: 493 EALRPILESPGVLKIGFNIKFTAVLLAQH---GITLQNADDVQLMSYALDAGRHAHGLDA 549 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A K E+I + A Y D V +++ Sbjct: 550 LAETWLGHKTLSYGEVI----------GSGKAKLSFDQVAIDRATCYAAEDADVALRLWR 599 Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P E+ L + + RG +D A+ L+ +++ E+ Sbjct: 600 VLKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQTAARIEAEIR 659 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G + ++L LF + L T+T + + + F Sbjct: 660 EIA-GEEINIGSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELAEQGHEFP----- 713 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R L + S+ P P+ R H Sbjct: 714 ---------------------RKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAA 752 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +++P+ I +R IA+ G KLV AD + IE R+LA +A Sbjct: 753 TTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVL 812 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF+ G D++ T + F V + + R K + + Y A +A+ G+ Sbjct: 813 KQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAF---GLANQLGIP 869 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 E+A + + E P I + + R H V Sbjct: 870 R----------------EEAGAYIKKYFERFP-------GIRAYMDATRDFCR-AHGFVE 905 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L+ GR Y D+ Sbjct: 906 TLF-------------------------------------------GRKCHYPDIK---- 918 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 N + R +L Q + DI+ M+ A ++L VHDE+ Sbjct: 919 ASNASVRAFNERAAINARL-----QGTAADIIRRAMVRMEDALAEKKLSAQMLLQVHDEL 973 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 + E D + ++ +M P A +PL+ + Sbjct: 974 IFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDA 1011 >gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)] Length = 1018 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 98/620 (15%), Positives = 190/620 (30%), Gaps = 150/620 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113 LK LEN ++ + + ++ VL+ L+ W +LA +A Sbjct: 484 LKPILENPEIGKIGQHLKYDAHVLRKYGIELNTSPKNWEMDTMLASYVLNAAATRHSMDD 543 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K T + + A + +Y D +T ++F+ Sbjct: 544 LARHYLHTQTISFEDVAGKGAKQVTFDKV----------AINIASDYACEDADITYQLFE 593 Query: 174 RLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + + L + G + + + L++ D E +L+++ Sbjct: 594 LFQDRLKDDTVNQRLLHELEIPVAQILCQMESEGIMIKRSFLNELSERFDEEIIELEKQA 653 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 G + ++L LF + G+ T++ T + VLS + + Sbjct: 654 YVEA-GEEFNLGSPKQLGEVLFDKLGVIGGKKTKSGQYSTGEAVLSKIDHPLAEIALEYR 712 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + + L+ + + R H Sbjct: 713 SLAKLKNTYTDALDAVADK---------------------------------DTDRVHTS 739 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R IA EG+ L+ AD + IE R++A + Sbjct: 740 YHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQAFIAPEGRVLLAADYSQIELRLMAHFS 799 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ KAF G D++ T A + +VT +R K + L Y A +A Sbjct: 800 GDANLTKAFNEGLDIHTATAAEVLGKSVDEVTPTERRNAKAINFGLLYGMSAF---GLAK 856 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 ++ + + ++ R+MQ+ Sbjct: 857 QLQMSRGEAQDYID-----QYFKRYPGVRRYMQDTRD----------------------- 888 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 N + + + +TI GR L D+ Sbjct: 889 --------NAVDKGYIETIL-------------------------------GRKLYTPDI 909 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629 +N N R+ L Q + D++ M+ K ++L VH Sbjct: 910 NSN----NQMVRRGAERAAINAPL-----QGSAADLIKLAMIAVDKVLPKQNAKMLLQVH 960 Query: 630 DEIVCETPDTDEFNASMLYH 649 DE+V E L Sbjct: 961 DELVFEVDSDKADEIGELIK 980 >gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] Length = 917 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 103/604 (17%), Positives = 190/604 (31%), Gaps = 87/604 (14%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------- 57 ID + D + ++ +F + H P MP+ L Sbjct: 336 IDAAALTAFDTETTALDP--MTARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDDVLA 393 Query: 58 --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 K LE+ D V + ++ VL I TL+ + A Sbjct: 394 RLKPWLESADRKKVGQHLKYDAQVLANYGIALNGIE--HDTLLESYVLESHRTHDMDSLA 451 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L+ K + +++ + K + + + +T ++ + L Sbjct: 452 LRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD----------ITLQLHQAL 501 Query: 176 EPLSSKE--QELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P ++E E Y D + G +D AL + + +L+ + Sbjct: 502 YPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYE 561 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + +++ F + L + +T + VL + P + +R Sbjct: 562 LAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR 620 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 G S+ P P R H Sbjct: 621 -------------------------------GLSKLKSTYTDKLPRMVNPATGRVHTNYA 649 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + ++DP+ I +R IAS G ++V AD + IE R++A ++G+ Sbjct: 650 QAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L+AF GED++ T A F V P +V DQR I KV+ L Y A +AS Sbjct: 710 ASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAF---GLASNL 766 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + E+ A + ++ T R + + + Sbjct: 767 GITRDAAKLYIDRYFTRYP------GVAHYMEDTRTTAKDKGYVETVFGR-RLWLPEING 819 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPL-VYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + + ++ +D+ +++ LV Sbjct: 820 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPD 879 Query: 575 NNRS 578 + S Sbjct: 880 DELS 883 >gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797] gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797] Length = 900 Score = 250 bits (638), Expect = 7e-64, Method: Composition-based stats. Identities = 103/578 (17%), Positives = 185/578 (32%), Gaps = 86/578 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEAL----ENT 64 +DL G+ + ++ +A ++ H PVE + PQ + E L E+ Sbjct: 322 VDLETTGLKP--AEAEIVGWAISWEKHRGFYIPVE-GPSGQLALDPQYVLEHLKPILEDP 378 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALKLSS 120 ++ I N ++ VL + + ++A +L + E + + Sbjct: 379 EILITNQNIKYDMVVLMRV---GVFLQGVSIDPMVASYLISAGERGHSLDKLSE--RYLN 433 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK------- 173 M ELI + K EY D + ++ + Sbjct: 434 HTMIPISELI----------GSGKQQKKMFEVDVDKVAEYAVEDAEIAWQLSRILQDELK 483 Query: 174 ---RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E E+ L + + G VD A +Q+++ T L E+ + G Sbjct: 484 HAGLWELYWELERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLISEIHEIA-GHE 542 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + +L+T LF E L + T+T S +KL P Sbjct: 543 FNIASPLQLRTVLFEELNLPVFKKTKTGPSTDQSVLEKLAPLHALPAR------------ 590 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + S+ P P R H +Q++ Sbjct: 591 ----------------ITEHRHLSKLKSTYLDALPGLVNPETGRIHASFNQVVAATGRLS 634 Query: 351 TSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +SDP+ I +R I E +L+ AD + IE R+LA ++ + +AF Sbjct: 635 SSDPNLQNIPVRTQEGRQIRKAFIPQDENWRLLCADYSQIELRILAHLSQDVALSQAFRE 694 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ + F V QV D R K + + Y + G+ + A Sbjct: 695 GADIHTAVASDIFRVPHDQVDSDMRRTAKAVNFGVIYGQSPFGLSE---AIGIPQSEAAG 751 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 ++ R + E + F+ T C R K+ + V + N Sbjct: 752 FIEDYFVRY------QGVREFLDQILEDCAKQKFVETICGR-KREIQGVRGGVQKQLNMP 804 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + T+ G A K+ + + K + + ML Sbjct: 805 ERTAINTVIQGSAADLIKQAMLNVSDRIKQEQHPGRML 842 >gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3] gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3] Length = 936 Score = 250 bits (638), Expect = 7e-64, Method: Composition-based stats. Identities = 82/490 (16%), Positives = 159/490 (32%), Gaps = 48/490 (9%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT-LVLARSNGLPSALKAVG 113 LK LE V N F R+VL+ I + ++ + Sbjct: 411 DKLKPLLEKIAPQKVVFNLKFMRSVLRL---EGINLQGVAFDPMLESYLLDSTGKHDKAS 467 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 LK ++ + + + K + ++ + + E F Sbjct: 468 LTLKYLQIEIASYEAIAGKGKKQLPFNQVSIKDITPYVGEHVELSLRLHLLLWPKLEKFP 527 Query: 174 RLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +L L E L + + G +D + + + ++++E + G + Sbjct: 528 KLVALYEDIELPLAIVLSDVELGGVEIDATMLGAQSVEIGKRLLEIEKEAY-IEAGKEFN 586 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L++ LF + L + T + KL Sbjct: 587 LSSPKQLQSILFEDLELPILKKTPKGAPSTGEEVLVELAE---------------TYKLP 631 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 LV ++ G S+ P + R H Q +T +S Sbjct: 632 KLV------------IEHRGLSKLKSTYTDKLPKMINAQTGRVHTSYHQAVTVTGRLSSS 679 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 DP+ I +R IA +G K+V AD + IE R++A ++ ++ L+AF TG D Sbjct: 680 DPNLQNIPIRSEQGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSQDKGLLEAFSTGLD 739 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T + F+V+ +VT +QR K + L Y A +A ++ + + Sbjct: 740 IHKATASEVFSVSVDEVTTNQRRSAKAINFGLIYGMSAF---GLAKQLKISRSDAKLYMD 796 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + ++ E + +G + +SR L +A Sbjct: 797 --KYFHRYPGVLTYMQTTRDKAREQGFVETILGRRLQ-----LPHINSRNGILKKASERA 849 Query: 528 FEQTIENGKA 537 G A Sbjct: 850 AINAPMQGTA 859 >gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72] Length = 880 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 119/667 (17%), Positives = 221/667 (33%), Gaps = 163/667 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85 ++ A+G D + + D + P+ + L K AL+ D+ VL + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144 +++P LA+ + +L Q + E+ + K Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436 Query: 145 RNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYC 198 R P + + + + +L+ L EQ L ++ + G Sbjct: 437 RALPEQEQLFEHLARKVQVLLETEKPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAGIK 496 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256 V+ + + L QE+ +L G + ++L T LF + GL LE T+ Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYNLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555 Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 H Q +T + DP+ I +R Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643 Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A+ G++ ++T E + +N+ Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM---- 754 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 E + + R + + +TI +RR + Sbjct: 755 -----------------ETIVREAR-------------DKGYVETI-------YHRRRSL 777 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 P + + R+ R+ R+ +N+ +Q + Sbjct: 778 PDI--------------NSRNFNIRNF-AERTAINSP------------------IQGSA 804 Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659 DIL M+N +A ++L VHDEIV E P+ + L M + A Sbjct: 805 ADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVRQLVKETMEAAIELA- 863 Query: 660 GLPLKAE 666 +PL A+ Sbjct: 864 -VPLVAD 869 >gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] Length = 845 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 124/634 (19%), Positives = 201/634 (31%), Gaps = 141/634 (22%) Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEA 115 ++L +V + F + + D I W+ L A LPS L A Sbjct: 316 DSLAACEVGLYPDGESFVLALAGKEYRPDWDIEHWVDHLSRAERVYLPSLKDLLVADSAW 375 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR- 174 L + + L A E +D+ + H+ + + T I +R Sbjct: 376 EGLPYARCFDLS-LGAYLLDPEQRSYSWDKIRQRHQNQLETHPDNNALSIMETGRILRRE 434 Query: 175 ------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 L + E L + + RG +D+ V E L E+ L G Sbjct: 435 LANSELLSLMQDIELPLVGVLVRMEKRGLAIDLEAFRRFLDEVQEELDGLTHEIYDLA-G 493 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + R +++ LF + L T +T +VL + + P ++ R Sbjct: 494 QEFNLRSSQQMAQVLFGDLELPTGRKTPGGVPSTSSQVLEGLRNVHPIIPKILRFRTLEK 553 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + PQ + SR H +Q+ T Sbjct: 554 LRSTYL--------------------------------EPLPQKVDDTSRLHTHFNQLAT 581 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S P+ I +R C +A EG +LV AD + IE RVLA ++ + L Sbjct: 582 ATGRLSSSGPNLQNIPIRGEFGPRMRQCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLL 641 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A ++A V + R K + L Y G QK++ G++L Sbjct: 642 EAFTQGEDIHSRTAAVIMDIADEHVDSEARRQAKTINFGLLYGMGP---QKLSRELGISL 698 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 N FI +R+ VS Sbjct: 699 NEAK---------------------------------TFIQRYFDRL--------QGVSA 717 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + A +Q A +RR +P + + Sbjct: 718 FYERIEDAAKQ--HGYVTTWAGRRRLLPDINSR--------------------------- 748 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633 N Q R +VQ + DI+ M+ A AG + L VHDE++ Sbjct: 749 -NANLAQQARRMA-----VNTVVQGSAADIIKMAMIEADGDTELADAGARLTLQVHDELL 802 Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + E L +M S +PL + Sbjct: 803 LEVPREAAETAGKRLAAIMASVAD--MDVPLAVD 834 >gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301] gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301] Length = 892 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 114/674 (16%), Positives = 198/674 (29%), Gaps = 162/674 (24%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP-----QVLKEALENTDV 66 ID G+ ++ + H P +P + L L + + Sbjct: 321 IDTETTGLNP--RHAKLVGISVATAPGRAAYIPLGHEDGPQLPRPLALERLAPVLADPSI 378 Query: 67 TIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 + HN+ F+ VL+ P+ T++++ + G + E L Sbjct: 379 LKIFHNAKFDLHVLERAGLADATPVD---DTMLMSYTLGAGRHGHGMDELSALHLDH--- 432 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR----------L 175 R + Y D VT ++ L Sbjct: 433 ------RPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRPRLRTEAAL 486 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + E+ L + + G VD A +++ + +E+E L G + Sbjct: 487 ALYETMERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREIEKLA-GRAFNPGS 545 Query: 236 LEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLK 290 ++L LF E GL T+T T VL ++V R + Sbjct: 546 PKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRVLEWRQLQKLKSTYA 605 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + E +D R+ + Q IT Sbjct: 606 DALVGEIDIADQRVHTSFS-------------------------------QAITTTGRLS 634 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +++P+ I +R IA+ GK L+ AD + IE R+LA +A ++F G Sbjct: 635 SNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKG 694 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T A F + + R K + + Y A +A G+ + Sbjct: 695 EDIHARTAAEVFGLPMEGMDPMVRRRAKAINFGIIYGISAF---GLARQLGIENSEA--- 748 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 K+ +R E+ ++ Sbjct: 749 -----------------------------------------KRFIDAYFARYPEIRRYMN 767 Query: 526 QAFEQTIENGKAIIA-RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + E +G + +R VP + K P+ R R +N Sbjct: 768 ETAEFARTHGYVLTPFGRRCYVPGITEKN---------PARRGYA------ERQAINAPL 812 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--IVLTVHDEIVCETP- 637 Q + DI+ M+ AG D ++L VHDE+V E P Sbjct: 813 ------------------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHDELVFEAPK 854 Query: 638 DTDEFNASMLYHLM 651 D E A + +M Sbjct: 855 DQAEATAKLACAVM 868 >gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125] gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125] Length = 876 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 97/656 (14%), Positives = 202/656 (30%), Gaps = 139/656 (21%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLD 87 ++ A ++ + D + L + L++ ++ R V+ + + Sbjct: 331 DILGLAIAHNNG---CYYIPTDEALRSEALIQWLKDERKEKWLFDAK--RAVVALGW-KN 384 Query: 88 IPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 I + L +A PS + V + K + E + + KG ++ Sbjct: 385 IELAGSTFDLQMASYLLDPSTSFHEVSDVTKHHRKGHVHEDEAV--YGKGAKRRIPDEKE 442 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 H K V + ++L + E L + + G VDV Sbjct: 443 LGEHLARKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVKVDVEQLEQ 502 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VL 263 + + ++ +L+Q + L G+ + ++L LF + L + T+T VL Sbjct: 503 MGEDLNARLEELEQTIHELA-GVSFNINSPKQLGEILFEKLQLPVIKKTKTGYSTSADVL 561 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + + R + ++ L++ ++ Sbjct: 562 EKLAGQHEIIDHILHYRQL-GKLNSTYIDGLLKVVHKG---------------------- 598 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLV 377 + H +Q +T ++DP+ I +R + SE ++ Sbjct: 599 --------TGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVPSEKDWFIL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA A ++ ++AF D++ T F+V+ +VT + R K + Sbjct: 651 AADYSQIELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAVNF 710 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + G+ A ++ A + + + + + E Sbjct: 711 GIVYGISDYGLSQ---NLGITRKEAATFIERYFAS--YPKVKEYLDHVIDEAREKGYV-- 763 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + ++RR +P + + Sbjct: 764 ---------------------------------------TTLLKRRRYLPDLTSRNFNQ- 783 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 RS R+ +NT +Q + DI+ + M+ Sbjct: 784 --------RSFA------ERTAMNTP------------------IQGTAADIIKQAMVQM 811 Query: 618 ------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + L +M +PLK + Sbjct: 812 ASRMDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQAVE--LRVPLKVD 865 >gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48] gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48] Length = 953 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 82/535 (15%), Positives = 171/535 (31%), Gaps = 68/535 (12%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 LK LE+ V V N ++ +V I + + T++++ Sbjct: 421 ELKPLLEDPTVLKVGQNIKYDLSVFARY---GIRVAPYDDTMLISYVL-----------E 466 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW---RLFGEYCKGDVTVTREIF 172 L M+E EL + + K + + EY D +T ++ Sbjct: 467 GGLHGHGMDELSEL-HLGHTPIPFKQVAGTGKSAKSFKFVDLKPATEYAAEDADITLRLW 525 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L+P ++ E+ + + + G +D + L+Q V +++ E Sbjct: 526 HVLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQVLRLLSQDFGVRMGEIETEA 585 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRM 281 ++ G + ++L F E L T T + +++ + R+ Sbjct: 586 HTVA-GHPFNLNSPQQLGAIFFDEMALPGGKKTATGQWATDVKVLEEIAEKGTHDQGQRL 644 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R L + ++ P+ R H Sbjct: 645 ----------------------ARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQL 682 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T +++P+ I +R+ +A G KL+ AD + IE R+LA + Sbjct: 683 ASTTTGRLSSNEPNLQNIPIRTLEGRKIRTAFVARAGHKLISADYSQIELRLLAHIGDIG 742 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 KAF+ G D++ T + F V + + R K + + Y A + + G Sbjct: 743 QLKKAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF---GLGNQLG 799 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +KT + + + + E ++ T R + H++ Sbjct: 800 IDNQEAGRYIKT------YFERFPGIKAYMDAAKEQVKATGYVETIFGR-RIHIPDIHAK 852 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVY 570 + +A G A +R + + + ++L L++ Sbjct: 853 SAGQRAFAERAAINAPIQGTAADIIRRAMIRMPGALEAAGLTTTMLLQVHDELIF 907 >gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 893 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 111/663 (16%), Positives = 207/663 (31%), Gaps = 141/663 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 + F + V + ++ + LK +EN + N + + K L + + Sbjct: 347 MIGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQLVLFKR---LGLAL 403 Query: 91 HRWICTLVLARSNGLPSALKAVGEALK------LSSQKMEEGKELIARFCKGETHECLYD 144 +L A V L L+ + GK A+F L Sbjct: 404 KGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKG--AKFTVPTDTNLLLS 461 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + + + + + ++ + E L ++ + +G V+ Sbjct: 462 -HVAHKADGLFKLEKPA----FTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYL 516 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 + ER Q + G + ++L LF + GL + T+T + Sbjct: 517 RNKGK-DLSERIADIQSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVD 575 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 +KL PQA V LQ+ ++ Sbjct: 576 VLEKLAPQAPIVD----------------------------HILQYRQLAKLKSTYIDGL 607 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVV 378 P+ S+ H Q +T + DP+ I +R+ + S ++ Sbjct: 608 LSVIYPKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFG 667 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMEL 437 AD + IE RVLA + G++ KAF GED++ T F +A V +R K + Sbjct: 668 ADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNF 727 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y +A+ G++ + T +++ WM A E Sbjct: 728 GIVYGISDY---GLANNLGISRAEAKRFIDT-----YFQEFPQIHEWM-NTIKTFAHEHG 778 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 ++ T IA +RR +P + K Sbjct: 779 YVET-------------------------------------IAHRRRYLPDIQAKNF--- 798 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 + RS R+ +N+ +Q + DI+ M+ Sbjct: 799 ------NLRSFA------ERTAMNSP------------------IQGSAADIIKIAMIKV 828 Query: 618 TKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670 +A ++L VHDE++ ETP + + + +M S A +PLK + + Sbjct: 829 NEALRENNLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHG 886 Query: 671 KRY 673 + Sbjct: 887 DTW 889 >gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] Length = 882 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 106/640 (16%), Positives = 195/640 (30%), Gaps = 140/640 (21%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 WD + L E L + + + L D I + LA Sbjct: 354 WDVAKEWK---ALCEWLADPAKEKWVFDGKRDTVGLAWH---DFAIKGISFDVYLASYLL 407 Query: 105 LPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + L ++ + +E E+ + K E H+ A Sbjct: 408 NAAESNPTLDSIAAQYAQTRVLSDE--EVYGKGAKRLVPEMDVLSEHVAHKAAAIWQSVP 465 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + E+ K L L E L + + +G V+ + + +D + L Sbjct: 466 VLREQLAENEMEKLLGEL---EAPLSMVLALMEKQGVKVNSERLVQMGEDLDKKLAGLTD 522 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 ++ L G + ++L LF L + T+T +KL P Sbjct: 523 QIYELAGG-AFNINSPKQLGEILFDRLSLPVLKKTKTGPSTSADVLEKLAP--------- 572 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + +++A+ L F + + + S+ H + Sbjct: 573 ----------YHPIIDAI---------LTFRQLGKLRSTYIEGLTKEIHTKTSKVHTLYN 613 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q T ++DP+ I +R I SE G ++ AD + IE R+LA ++ Sbjct: 614 QATTATGRLSSTDPNLQNIPIRMEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQ 673 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF+ G D++ T F V+ +VT R K + + Y + Sbjct: 674 DENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAVNFGIVYGISDYGLSQ---N 730 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + ++ ++ RWM E + A D + T R Sbjct: 731 LNITRKEAGDFIE-----RYFDVFSGVKRWMDE-IVQQAKADGHVTTLLNR--------- 775 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DV 573 LP RS + Sbjct: 776 --------------------------------------------RRYLPDIRSSNFNLRS 791 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 R+ +NT +Q + D++ M+ +A ++L Sbjct: 792 FAERTAMNTP------------------IQGTAADVIKLAMIRMQEALEEKGLASRMLLQ 833 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E PD + E ++ +M S + + +PLK + Sbjct: 834 VHDELVFEVPDNELEVMRKLVPEVMES--ALSLDVPLKVD 871 >gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10] gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10] Length = 878 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 99/636 (15%), Positives = 201/636 (31%), Gaps = 142/636 (22%) Query: 56 VLKEALENTDVTIVAHNSY-----FE--RTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106 +EAL + A + F+ RTV+ + I + + +A P Sbjct: 349 EAEEALTSDVFKKWAEDDQKEIYTFDAKRTVVALGWA-GIDLSNTTFDIQMASYLIDPAS 407 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + + A + + +++ + + KG+ H K ++ Sbjct: 408 GSHEIADIANRKNGIQVQTDEAVYG---KGKKQAIPEAEELSQHLGRKAAAILDLKKNLE 464 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++ E E L + + G VD T+ + + KL+Q++ Sbjct: 465 QELRDNRQWELFQDLEMPLSVILGRMEANGVSVDQQELETIGKDLTERLAKLEQQIYE-A 523 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF + GL + T+T VL K + R Sbjct: 524 AGQSFNINSPKQLGKVLFEDLGLPVLKKTKTGYSTSADVLEKLKGEHDVIDHILFYRQL- 582 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ ++ P+ + H +Q + Sbjct: 583 GKLNSTYIEGLLKVIH------------------------------PKTGKIHTIFNQAV 612 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 T +++P+ I +R + S G KL AD + IE RVLA ++ ++ Sbjct: 613 TQTGRLSSTEPNLQNIPVRLEEGRKIRRAFVPSKPGSKLFAADYSQIELRVLAHISKDEN 672 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF+ G D++ T + F V +VT + R K + + Y + G+ Sbjct: 673 LISAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAVNFGIVYGISDYGLSQ---NLGI 729 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + ++ ++ + E+ A E ++ T + Sbjct: 730 SRKKAQTFID------KYFESYPGVKTYMEDIVAEAREQGYVTTMLQ------------- 770 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +RR +P + + RS R Sbjct: 771 ------------------------RRRYLPDLTSRNFNQ---------RSFA------ER 791 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDE 631 + +NT +Q + DI+ + M++ ++L VHDE Sbjct: 792 TAMNTP------------------IQGSAADIIKKAMVDMATELERQNLKSVMLLQVHDE 833 Query: 632 IVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 ++ E P+ + L +M S +PL + Sbjct: 834 LIFEVPEDEIETMEKLVKDVMESTIE--LNVPLITD 867 >gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] Length = 1025 Score = 250 bits (637), Expect = 9e-64, Method: Composition-based stats. Identities = 102/647 (15%), Positives = 191/647 (29%), Gaps = 142/647 (21%) Query: 47 CVHDPVMPQVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + P+ +AL E+ V V F +L + + +++ + Sbjct: 485 LAPDQIGPRDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYA 541 Query: 103 NGLP---SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 AL A+ E+ L + + E G + + Sbjct: 542 LDAGRGSHALDALSESNLGHTLHTLTELT--------GTGKNKIG-----FDQVPVDRAT 588 Query: 159 EYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLN 208 Y V+ + + L+P E+ L + + RG +D + L+ Sbjct: 589 AYAAERADVSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLS 648 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 +++ E+ L G + ++L LF + GL T+T + Sbjct: 649 ADFAQTAARIEAEIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLD 707 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + F R L + S+ P Sbjct: 708 ELAEQGHEFP--------------------------RKILDWRQVSKLRSTYTDALPNYV 741 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383 P+ R H T +++P+ I +R +A+ G KLV AD + Sbjct: 742 HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQ 801 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+L+ +A KAF+ G D++ T + F V + + R K + + Y Sbjct: 802 IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 861 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A +A+ + +K E + + ++ H Sbjct: 862 SAF---GLANQLSIPREEAGAYIK--RYFERFPGIRAYMDETRDFCRNHGYV-------- 908 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + ++ P + P Sbjct: 909 ---------------------------------TTLFGRKCHYPDIKASN---------P 926 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 S R+ R N R G + I +A+ R E + K Sbjct: 927 SIRAFNERAAINARL---------------QGSAADIIRRAMVR---MEDALAEKKLSAQ 968 Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E P+ + E ++ +M P A +PL+ + Sbjct: 969 MLLQVHDELIFEVPEAEVEATLPVVRAVMQDAPFPAVILNVPLQVDA 1015 >gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056] Length = 880 Score = 250 bits (637), Expect = 9e-64, Method: Composition-based stats. Identities = 116/666 (17%), Positives = 215/666 (32%), Gaps = 161/666 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G D + + D + P+ + L + T A VL + + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRA-------KVLLSHYGI 388 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145 ++P LA+ + +L Q + E+ + K R Sbjct: 389 ELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK---------R 437 Query: 146 NKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 P + + + + +L+ L EQ L ++ + G V Sbjct: 438 ALPEQEQLFEHLARKVQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAGIKV 497 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET 257 + + + L QE+ L G + ++L T LF + GL LE T+T Sbjct: 498 ERETLQGMQAENEKTLESLTQEIYDLA-GQKFNINSPKQLGTILFEDMGLPLEYTKKTKT 556 Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 VL + P ++ R S+ + L EA+ +DG+ Sbjct: 557 GYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK----------- 604 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369 H Q +T + DP+ I +R + Sbjct: 605 --------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV 644 Query: 370 ASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKD 427 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + Sbjct: 645 PEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKSEDVTPN 704 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y +A+ G++ ++T E + +N+ + Sbjct: 705 DRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYMETIVR 759 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 +A+ +TI +RR +P Sbjct: 760 EAR----------------------------------DKAYVETI-------YHRRRSLP 778 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + R+ R+ R+ +N+ +Q + Sbjct: 779 DI--------------NSRNFNIRNF-AERTAINSP------------------IQGSAA 805 Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660 DIL M+N +A ++L VHDEIV E P+ + L M + A Sbjct: 806 DILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA-- 863 Query: 661 LPLKAE 666 +PL A+ Sbjct: 864 VPLVAD 869 >gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31] gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31] Length = 973 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 105/633 (16%), Positives = 191/633 (30%), Gaps = 138/633 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V +A N+ ++ VL PI + + + + + E L Sbjct: 447 LKPLLEDPAVLKIAQNAKYDIAVLARYGINVGPIEDTMLISYVLEAGLHGHGMDELSE-L 505 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L K K++ KG+ Y D VT ++ L+ Sbjct: 506 WLG-HKPISFKQVAGSG-KGQIS---------FKHVGLAEATAYAAEDADVTLRLYNVLK 554 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P ++E + L + + + G VD L+ + + + L Sbjct: 555 PRLAREGLLTVYETLERPLPAVLAAMENDGIRVDPDTLRRLSNEFSMRMADFEARAQEL- 613 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + +++ LF E L T T T VL + + +V + + Sbjct: 614 VGRPFNLGSPKQIGDVLFGEMALKGGKKTATGQWSTDSDVLEALALEH-ELPRVLLDWRQ 672 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ L+ A+ G +R H Sbjct: 673 LSKLKGTYTENLIAAIAPGG-----------------------------GNRVHTSYALA 703 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 T +SDP+ I +R +A+ GK L+ AD + IE R+LA + Sbjct: 704 ATTTGRLSSSDPNLQNIPIRTEEGRKIRKAFVAAPGKVLISADYSQIELRLLAHIGDIPQ 763 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 KAF+ G D++ T + FNV + + R K + + Y A +A+ + Sbjct: 764 LKKAFQEGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINFGIVYGISAF---GLANQLSI 820 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + K + ++ + Sbjct: 821 PQGEAGAYI-----------------------------------------KTYFERFPGI 839 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 Q R+ V ++ GR + D+G Sbjct: 840 ------------QAYMEATKAFVREHGYVTTIF--------------GRKINIPDIGGKS 873 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 + G + + +A+ R G + A ++L VHDE+V E P Sbjct: 874 VAHRQFAERAAINAPIQGAAADVMRRAMVR---MPGALKAAGLSSRMLLQVHDELVFEAP 930 Query: 638 DTD-EFNASMLYHLM--TSNPSWAKGLPLKAEG 667 + + + + +M + P+ +PL E Sbjct: 931 EAEAQATIDVAREVMQGAAAPAVTISVPLTVEA 963 >gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255] gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255] Length = 1010 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 103/633 (16%), Positives = 188/633 (29%), Gaps = 134/633 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 ++LK LE+ + N F +L I + +++ + + Sbjct: 482 ELLKPILESRGHLKIGLNVKFSAVLLAQH---GIVMQNHDDIELISYALDAGRGSHDLAS 538 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRN-KPNHREAWRLFGEYCKGDVTVTREIF 172 A K + RN + A Y +T ++ Sbjct: 539 LA-----------KRWLGHATVSHGELTGSGRNRLAFDQVAIDRATAYAAEYADMTLRLW 587 Query: 173 KRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L+P E+ + + RG +D + L+ +L+ E+ Sbjct: 588 QVLKPRLVAERMNTVYETLERPMIATLAQMERRGITIDRQVLSRLSGEFAQSAARLEAEI 647 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 + L G + +++ +F + GL T+T + + F Sbjct: 648 QQLA-GEPINVGSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDELAEQGHDFP---- 702 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 R L + S+ P P+ R H Sbjct: 703 ----------------------RKILDWRQVSKLKSTYTDALPEYVHPQTRRVHTTYALA 740 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 T +++P+ I +R IA+ G KLV AD + IE R+LA +A Sbjct: 741 ATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADIPV 800 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G D++ T + F V + + R K + + Y A +A+ G+ Sbjct: 801 LKQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAF---GLANQLGI 857 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 A +K ++ + R + E E ++ T R K Sbjct: 858 PREEAAAYIK------KYFERFPGIRAYMDATREFCREHGYVTTLFGRKCHYPDIKSPN- 910 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 PS R+ R N R Sbjct: 911 ---------------------------------------------PSHRAFNERAAINAR 925 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637 G + I +A++R + + A ++L VHDE++ E P Sbjct: 926 L---------------QGSAADIIRRAMAR---MDDALAARNLSARMLLQVHDELIFEVP 967 Query: 638 DTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 D + ++ H+M P A +PL+ + Sbjct: 968 DDEVAATLPVVQHVMQDAPFPAVLLSVPLQVDA 1000 >gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] Length = 1025 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 102/647 (15%), Positives = 191/647 (29%), Gaps = 142/647 (21%) Query: 47 CVHDPVMPQVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + P+ +AL E+ V V F +L + + +++ + Sbjct: 485 LAPDQIGPRDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYA 541 Query: 103 NGLP---SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 AL A+ E+ L + + E G + + Sbjct: 542 LDAGRGSHALDALSESNLGHTLHTLTELT--------GTGKNKIG-----FDQVPVDRAT 588 Query: 159 EYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLN 208 Y V+ + + L+P E+ L + + RG +D + L+ Sbjct: 589 AYAAERADVSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLS 648 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 +++ E+ L G + ++L LF + GL T+T + Sbjct: 649 ADFAQTAARIEAEIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLD 707 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + F R L + S+ P Sbjct: 708 ELAEQGHEFP--------------------------RKILDWRQVSKLRSTYTDALPNYV 741 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383 P+ R H T +++P+ I +R +A+ G KLV AD + Sbjct: 742 HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQ 801 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+L+ +A KAF+ G D++ T + F V + + R K + + Y Sbjct: 802 IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 861 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A +A+ + +K E + + ++ H Sbjct: 862 SAF---GLANQLSIPREEAGAYIK--RYFERFPGIRAYMDETRDFCRTHGYV-------- 908 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + ++ P + P Sbjct: 909 ---------------------------------TTLFGRKCHYPDIKASN---------P 926 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 S R+ R N R G + I +A+ R E + K Sbjct: 927 SIRAFNERAAINARL---------------QGSAADIIRRAMVR---MEDALAEKKLSAQ 968 Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E P+ + E ++ +M P A +PL+ + Sbjct: 969 MLLQVHDELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDA 1015 >gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1] Length = 831 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 81/432 (18%), Positives = 146/432 (33%), Gaps = 64/432 (14%) Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHT 206 E + + + L E++L +L + G +DVA Sbjct: 398 TEDAAQRALLAERLQQNLLERLEGEEKLLWLYREVEKPLSRVLAHMEATGVRLDVAYLKA 457 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261 L+ V+ E +L++E+ L G + ++L+ LF E L T+ T +R Sbjct: 458 LSLEVEAELKRLEEEVYRLA-GHPFNLNSRDQLERVLFDELKLPALGKTQKTGKRSTSAA 516 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + ++ P ++ +R S+ Sbjct: 517 VLEALREAHPIVEKILQHREL-------------------------------SKLKSTYI 545 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376 P PR R H +Q T +SDP+ I + +R +A EG L Sbjct: 546 DPLPGLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGFLL 605 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V D + IE RVLA ++G++ ++ F G+D++ T + F V V R K + Sbjct: 606 VALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAAKTVN 665 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A +++ + + E + + R E E + Sbjct: 666 FGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYFQSFPKVRAWIEKTLEGGRQR 716 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R ++ ++RV + + G A K V L K+ Sbjct: 717 GYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLKETG 775 Query: 557 NLILMLPSGRSL 568 ++L L Sbjct: 776 A-RMLLQVHDEL 786 Score = 59.8 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 11/127 (8%) Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604 K + + L GR Y + G R + R + RE VQ Sbjct: 696 FQSFPKVRAWIEKTLEGGRQRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 754 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAK 659 + D++ M + G ++L VHDE++ E P D E A++ +M A Sbjct: 755 TAADLMKLAMVKLFPRLKETGARMLLQVHDELLLEAPKDRAEAVAALAKEVMEGVYPLA- 813 Query: 660 GLPLKAE 666 +PL+ E Sbjct: 814 -VPLEVE 819 >gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470] gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470] Length = 858 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 91/505 (18%), Positives = 154/505 (30%), Gaps = 131/505 (25%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L + + G D + + V+ KL + G + ++ Sbjct: 457 EKIENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQERKLLSLIYE-AAGEEFNVNSPKQ 515 Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L LF + G+ T+ +T VL K P + Sbjct: 516 LGVILFEKMGMPAGKKTKNGYSTAADVLEMLAKSYPFVKDILE----------------- 558 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + S+ P P R H +Q +T +SDP+ Sbjct: 559 --------------YRTISKLISTYLEALPLLIRPETGRIHTSFNQTVTATGRLSSSDPN 604 Query: 356 PLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +RS + G + +D + +E RVLA M+G++ ++AF ED++ Sbjct: 605 LQNIPVRTAEGRQIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIH 664 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A + +VT +QR+ K + + Y +A+ G++ +K Sbjct: 665 RRTAAEVLGIPFEEVTSEQRSHAKAVNFGIIYGISDF---GLANQLGISRGEAGTYIK-- 719 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 E + F + M E A E T R Sbjct: 720 KYFERYPYIHAFMKSMV----EDAQESGRAKTLFGR------------------------ 751 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLT 588 LP RS + R R+ +NT Sbjct: 752 -----------------------------YRELPDIRSSNFNRRSFAERTAMNTP----- 777 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY--DIVLTVHDEIVCETPDTDEF 642 +Q + DI+ M+ ++ GY ++L VHDE+V E ++ Sbjct: 778 -------------IQGTAADIMKLAMIEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKE 824 Query: 643 NAS-MLYHLMTSNPSWAKGLPLKAE 666 N +L M S +PL A+ Sbjct: 825 NLKTLLKETMESVVE--LKVPLIAD 847 >gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] Length = 936 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 90/481 (18%), Positives = 161/481 (33%), Gaps = 76/481 (15%) Query: 49 HDPVMP-QVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARS 102 +P + AL + ++ AHN+ F+ VL + I + T++ A Sbjct: 396 EGEQLPLADVVAALGPLFADPNIPKFAHNAKFDAEVLA---GVGIQVAGLAFDTMIAAAM 452 Query: 103 NGLPSALKAVGEA-LKLSSQKMEEGKELIARFCKG--------ETHECLYDRNKPNHREA 153 G LK + LKL ++LI R K E + + Sbjct: 453 LGKRQGLKDLAFYELKLPEPP-TTIEDLIGRGSKQISFAAVPIEQAAPYAAADALHTLLL 511 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 D R+++ R+ E L + + G +D L + Sbjct: 512 TETLRGQLTTDT-ALRDLYYRV------ELPLIDVLTDMELTGILLDHEYLRELGKRFAQ 564 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--------HLEDLTETTCQRVLSS 265 +L +++ + G + ++L LF G+ L+ + VL Sbjct: 565 RIAELTEQIYAKAGG-PFNINSGQQLNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEE 623 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +L P A + R ++ P Sbjct: 624 LSQLYPIAADILAYRQL-------------------------------TKLKSTYIDALP 652 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 PR R H +QI +++P+ I +R +A+ G + V AD Sbjct: 653 QLVNPRTGRIHTSYNQIGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAAPGHRFVAAD 712 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA ++G++ + AF+ G D++ T +R F VAP QV K+QR + K + + Sbjct: 713 YSQIELRVLAHISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVI 772 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A +A G+ + L+ + E++ + +H G Sbjct: 773 YGISAF---GLAQRLGIERDLARQLID--NLFEQFPGIRRYIDQTLAFGRQHGYVQTLFG 827 Query: 501 T 501 Sbjct: 828 R 828 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Query: 598 TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HL 650 +Q + DI+ M+ +A ++L VHDE++ E P+ + A+ L + Sbjct: 850 INAPIQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAEAPEEEVPAAAHLLREV 909 Query: 651 MTSN 654 M++ Sbjct: 910 MSNT 913 >gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579] Length = 891 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 98/630 (15%), Positives = 199/630 (31%), Gaps = 137/630 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK-AVG 113 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFC 426 Query: 114 EALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 K+ ++ +E+ + K E H K + Sbjct: 427 TVAKMKETHAVKSDEEVYGKGAKRAVPELKVV---AEHVARKVHVLYDVKQTFVEELKKN 483 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++ E + E L + + +G VD + + + +++QE+ L G + Sbjct: 484 EQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLA-GTEFN 542 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + + R + Sbjct: 543 INSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQL-GKLNST 601 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ ++ D S+ H +Q++T Sbjct: 602 YIEGLLKVVHED------------------------------SSKIHTRFNQVLTQTGRL 631 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++DP+ I +R + SE G + AD + IE RVLA +A ++ ++AF+ Sbjct: 632 SSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQ 691 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F V +VT + R K + + Y + G+ A Sbjct: 692 HDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKAAA 748 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + E++ ++ + E+ + A + ++ T R R+ ++ Sbjct: 749 EFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIPEITS---- 793 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 R+ R R+ +NT Sbjct: 794 ------------------------------------------RNFNLRSF-AERTAMNTP 810 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETP 637 +Q + DI+ + M+ + G ++L VHDE++ E P Sbjct: 811 ------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAP 852 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + L +M A +PLK + Sbjct: 853 KEEIEKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2] gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2] Length = 884 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 107/637 (16%), Positives = 199/637 (31%), Gaps = 140/637 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAV 112 ++E L + + H+ + RT L ++ I + LA P L + Sbjct: 365 IREWLADPERKKRGHDLH--RTDLALHWH-GIEFAGAEFDVQLAGYLLDPTDANQTLSGL 421 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHEC-LYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 LSS + ++ E+ + K + E + + + ++ T E+ Sbjct: 422 AAKYGLSSIRPDD--EVFGKGAKYKVPEMDVLSDHVARKAAVIEALVPVQQAELEKT-EM 478 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 K L E L + + +G V+V L + + + L E+ S+ G+ Sbjct: 479 HKLFHEL---EMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSIA-GVEF 534 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L LF + GL + T+T +KL P Sbjct: 535 NLNSPKQLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPY------------------- 575 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 ++ LQ+ ++ + + + H Q + + Sbjct: 576 ---------HDIVQNILQYRTIAKLQSTYVEGLLKEISEKTGKVHTYFRQTVAATGRLSS 626 Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 P+ I +R + SE G ++ AD + IE RVLA ++ ++ +AF Sbjct: 627 QFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHD 686 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T + F V V D R K + + Y + + A Sbjct: 687 MDIHTKTASDVFGVPAEAVDSDMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAARF 743 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + ++ D R ++ + A D ++ Sbjct: 744 ID------QYFDVFQGVRRYMDDIVKDAKRDGYV-------------------------- 771 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTT 584 K ++ R+R LP + + R+ +NT Sbjct: 772 ----------KTLLERRRY-----------------LPEINASNFNQRSFAERTAMNTP- 803 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPD 638 +Q + DI+ M+ A ++L VHDE+V E P Sbjct: 804 -----------------IQGTAADIIKLAMVQMDAALRERNLRSRMLLQVHDELVFEVPP 846 Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + L M + A +PLKAE Y S Y Sbjct: 847 EEMETMKELVPATMEAALKLA--VPLKAEVSYGSNWY 881 >gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365] gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365] Length = 930 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 116/649 (17%), Positives = 197/649 (30%), Gaps = 155/649 (23%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSN-GL 105 +P+ L+ L + V IVAH + L LD P+ + +LA G Sbjct: 394 AQWSALPEALRALLADPAVEIVAH----DVKSLARLLRTLDAPLAGVLGDTMLAAYLLGQ 449 Query: 106 PSALK-------AVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDRNKPNHREAWRLF 157 L+ AVG L + G+ I +W Sbjct: 450 EGKLEVEDVAGAAVGAELPTRKSLLGSGRSKIGFEAVDISAAAMRAGGAAAAVLASWPRL 509 Query: 158 GE---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 GE + GD ++L E L L I + G +DV L + + Sbjct: 510 GEQLEHAGGD-----GALRKLH--DELELPLALLLAEIEEHGITLDVPYLRALADELGGQ 562 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKK 268 +++++ L G + ++L LF + GL + + T T +L S + Sbjct: 563 LAGIERQVYELA-GEEFNLGSPKQLGHMLFEKLGLRADKMRRTKTGSYSTNHEILESMAE 621 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + +R + PP Sbjct: 622 SHAIIPPIIEHRELL-------------------------------KLKGTYLDALPPLV 650 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAG 383 P R H +Q + + DP+ I I +R +A+ GK LV D + Sbjct: 651 NPHTGRIHTSFNQAVAATGRLSSQDPNLQNIPIRKDIGRRIRRAFVAAPGKTLVSIDYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RV+A ++G++ ++AF+ D++ T A F++ ++ D+R + K + L Y Sbjct: 711 IELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDERRVAKAVNYGLMYGQ 770 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 +A + G++ AH Sbjct: 771 SEF---GLAQSLGISRAQAAHY-------------------------------------- 789 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + R S + + Q G A+ Sbjct: 790 ------MERYFERFSTVRAYMDQVVADARAEGAAVTL----------------------- 820 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 L R + N R+ VQ + DI+ M+ Sbjct: 821 ----LGRRRPIPDLDARNQQRRRAAERVA-----QNTPVQGSAADIIKLAMLRVAAHLAR 871 Query: 624 ------IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 ++LTVHDE+V E P+ E A + M ++A +PL A Sbjct: 872 GEWDASMLLTVHDELVFEVVPEQAETFAKAMIAEMEG--AYALDVPLVA 918 >gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195] Length = 880 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 103/630 (16%), Positives = 201/630 (31%), Gaps = 137/630 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPS-ALKAV 112 +V KE +EN D +S R V+ +++ +LA P + V Sbjct: 359 EVFKEWVENDDQKKWVFDSK--RAVVALRWQGIEL--KGAEFDTLLAAYIINPGNSYDDV 414 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 K + E + + KG + H L + + + E Sbjct: 415 ASVAKDYGLHIVSSDESV--YGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENN 472 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +LE E L + + G VDV + + + + + ++++ + G + Sbjct: 473 DQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIA-GEPFN 531 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + GL + T+T VL + R Sbjct: 532 INSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQ-------- 583 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G+L+ T G + R P + H +Q +T Sbjct: 584 -----------IGKLQSTYI-EGLLKVTR-----------PDSHKVHTRFNQALTQTGRL 620 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++DP+ I +R + SE + AD + IE RVLA ++ ++ ++AF Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+VA +VT R K + + Y + G+ Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAG 737 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + ++ + E+ + A + ++ T Sbjct: 738 AFID------RYLESFQGVKAYMEDSVQEAKQKGYVTT---------------------- 769 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + +RR +P + + + RS R+ +NT Sbjct: 770 ---------------LMHRRRYIPELTSRNF---------NIRSFA------ERTAMNTP 799 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637 +Q + DI+ + M++ ++L VHDE++ E P Sbjct: 800 ------------------IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAP 841 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ +M + A +PLK + Sbjct: 842 KEEIEILEKLVPEVMEH--ALALDVPLKVD 869 >gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae] Length = 920 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 106/668 (15%), Positives = 206/668 (30%), Gaps = 153/668 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-----LKEALENTDVTI 68 ID G+ + + +I +F + D + + + + LE D+ + Sbjct: 354 IDFETTGLDTFKD--TIIGISFAIKSNEAFYLDLSGRTKIGKDKCMNLVFDTLEKEDIKV 411 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + HN +E ++KA + I ++A P+ M++ Sbjct: 412 IGHNLKYEYKMMKA---IGKSIGNMYFDTMVAAYLINPTR----------GRYNMDDLA- 457 Query: 129 LIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----- 181 IA N K + EY D VT ++ PL Sbjct: 458 -IAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEE 516 Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + + G + L+ K +++ + G + + Sbjct: 517 LFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEA-GEEFNLQSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+ LF + G+ T+T +L S K+ Sbjct: 576 KQLEYILFDKMGIPPTKKTKTGFSTDEEVLTEL----------------SQKYKIAEY-- 617 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 L + ++ VFP + R H +Q +T +S+P+ Sbjct: 618 ----------MLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNL 667 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R+ I +G L+ AD + IE R+LA + + ++AF+ +D++ Sbjct: 668 QNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRK 727 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + ++V+ VT R I K++ ++ Y A ++ G+ Sbjct: 728 TAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAF---GLSKELGIKKK----------- 773 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 +AE+F + + + C+ V + R Sbjct: 774 -----EAEDFIKGYSSTYSR-------VKPFCDEVVEEVRN------------------- 802 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 K + M R L +N N R Sbjct: 803 -----------------------KGFVRTMCGRIRDLSKTINSSNAMARNEAERM----- 834 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 ++Q + D++ M+ K IV+ VHDE+V E + + A Sbjct: 835 -----ALNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAM 889 Query: 645 SMLYHLMT 652 +++ +M Sbjct: 890 TIMKEIME 897 >gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] Length = 933 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 93/653 (14%), Positives = 176/653 (26%), Gaps = 155/653 (23%) Query: 46 DCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D + + MP LK E++ + + N ++ + +PI + Sbjct: 395 DALAEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARYGVNVVPIDDTMLMSY-- 452 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 +G + + S K L+ T + + Y Sbjct: 453 AMHGGKHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKV----------PIDEATAY 502 Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D +T ++K +P + E+ L + + G VD + ++ Sbjct: 503 AAEDADITLRLWKLFKPQLHQVQVTTVYETLERPLVPVLAEMEMNGIKVDRDVLSRMSNA 562 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266 + L+ E+ L G + +L LF + GL + +T +L Sbjct: 563 FAQKMAGLEAEIHELA-GENFNVGSPAQLGEILFDKMGLEGGKKGKTGKYSTGADILEDL 621 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 +V + R S+ Sbjct: 622 ATEHELPRRVLDWRQL-------------------------------SKLKSTYTDALQT 650 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H + ++DP+ I +R IA G LV D Sbjct: 651 HINPDTGRVHTSYSITGANTGRLASTDPNLQNIPVRTEEGRRIRGAFIAEPGNVLVSLDY 710 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA +A +AF G D++ T + F+V ++T + R K + + Y Sbjct: 711 SQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + +A+ F E P Sbjct: 771 GISGFGLARNLRI-------------------PRAEAQGFIDRYFERFP----------- 800 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 R+ + QT+ K + Sbjct: 801 -------GIRRYMDDTVAF--AKEHGYVQTLFGRK-----------------------IH 828 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 P + + R+ +N +Q + D++ M+ A Sbjct: 829 TPEINAKGPHAGFSRRAAINAP------------------IQGTAADVIRRAMVRMPGAI 870 Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEG 667 ++L VHDE++ E + + +M A + L A+ Sbjct: 871 NGLPAKMLLQVHDELLFEVAEGAVDETIGIARDVMEGAADPAVKLDIKLVADA 923 >gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium] Length = 898 Score = 249 bits (635), Expect = 2e-63, Method: Composition-based stats. Identities = 106/649 (16%), Positives = 206/649 (31%), Gaps = 157/649 (24%) Query: 50 DPVMPQ-----VLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVL--AR 101 +P+ LKE +N ++ + HN F +LK L+ + L + Sbjct: 364 GTALPENLIATELKELWQNENIHKIGHNIKEFITWLLKHDVELNGLYFDTMIAEYLIDSI 423 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 NG P A + K ++ + EL+ + + + + +Y Sbjct: 424 RNGYPIA----SLSHKYLNRSVPSLDELLGKGKGAKKYSEIPP----------ERLKDYS 469 Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211 +V +I+ + + + E L + ++ G+ VD A H +++ Sbjct: 470 AYNVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEYHGFKVDAAKLHEYGEVL 529 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 L++ + L G + ++L T LF + L + T+T + ++L Sbjct: 530 LSRIKDLEKVIYMLA-GEEFNINSTKQLGTILFEKLKLPVVKSTKTGYSTDVEVLEEL-- 586 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + +++ ++ P Sbjct: 587 ------------------YYKHDI--------IPCIIEYRQLTKLYTTYAEGLEKVINPV 620 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIE 385 + H +Q +T +++P+ I +R I S E V AD + IE Sbjct: 621 TGKIHSSFNQTVTATGRISSTEPNLQNIPVRHEMGREIRKAFIPSSENAVFVDADYSQIE 680 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA + G++ + AF GED++ T + F+VAP VT + R K + + Y Sbjct: 681 LRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELRRKAKAVNFGIVYGISD 740 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 +A G+ A+ + +P+ + T + Sbjct: 741 Y---GLARDLGITRKE----------------AKRYIDDYFAKYPK-------VKTYVDE 774 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + Q + +T+ + + LP Sbjct: 775 IVRV-------------GQEQGYVETLFHRR-----------------------RYLPEL 798 Query: 566 RSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621 S + R +NT +Q + DI+ M+ KA Sbjct: 799 ASKNFHQRSFGKRVAMNTP------------------IQGTAADIIKIAMVKVYKALKES 840 Query: 622 ---YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V ET + + L M +PL + Sbjct: 841 GLKSRLILQVHDELVIETFEDELETVKELVKKCMEEAVE--LSVPLVVD 887 >gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] Length = 939 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 95/577 (16%), Positives = 190/577 (32%), Gaps = 71/577 (12%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKEALENTDVTIVAH 71 D G A D+ + F+ + PV D + T +T++ Sbjct: 371 DTETTGTDANAVDLVGMSFSIKAGEGWYIPVPA-DKAQAQAIVDSFLPLFNTTHITLIGQ 429 Query: 72 NSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N ++ V+K + P+ + L G + L+ +E LI Sbjct: 430 NIKYDMIVMKWYGVEFNGPVFDTMLAHYLIEPEGRRGMDLLSAQYLQYEPVSIET---LI 486 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------S 180 + KG+ + EY D +T ++ ++ PL Sbjct: 487 GKKGKGQGN---------MRDVEIDKIKEYAVEDADITLQLKEKFAPLLPLKAVDKVFYD 537 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + + G +D+ ++ ++ E + ++ + + G+ + ++L Sbjct: 538 VENPLVRVLTDMEYEGIALDIQALSDYSRELETEIKRAEESVYTQA-GVRFNLASPKQLG 596 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 LF + L P+A + + + KL + + Sbjct: 597 EVLFEKL--------------------LLDPKAKKTKTGQYATGEDVLAKLANKHQIVED 636 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 L F S+ P R +R H +Q + +++P+ I Sbjct: 637 ------ILVFRELSKLKSTYVDALPLMLNKRTNRVHTSYNQAVAVTGRLSSNNPNLQNIP 690 Query: 361 -----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 VR +A E L+ AD + IE R++A ++G+ + AF G D++ T A Sbjct: 691 IRTDRGREVRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHMIDAFRQGLDIHAATAA 750 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + + V A VT D R K + + Y A + G+ L+ A Sbjct: 751 KVYGVELADVTADMRRNAKSVNFGIIYGVSAFGLSE---NLGIARGEAKTLIDNYFAQYP 807 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + ++ + A ++ ++ T R K+ + +S + + + Sbjct: 808 ------SIKKYMDDQIKSAQQNGYVETLLGR-KRWLKDINSSNAVVRGYAERNAINMPIQ 860 Query: 535 GKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 G A K + + K +N ++L LV+ Sbjct: 861 GTAADMIKLAMISIHKTLKKENLRSRMILQVHDELVF 897 >gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5] gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5] Length = 880 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 103/630 (16%), Positives = 201/630 (31%), Gaps = 137/630 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPS-ALKAV 112 +V KE +EN D +S R V+ +++ +LA P + V Sbjct: 359 EVFKEWVENDDQKKWVFDSK--RAVVALRWQGIEL--KGAEFDTLLAAYIINPGNSYDDV 414 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 K + E + + KG + H L + + + E Sbjct: 415 ASVAKDYGLHIVSSDESV--YGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENN 472 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +LE E L + + G VDV + + + + + ++++ + G + Sbjct: 473 DQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGTKLKEYEEKIHEIA-GEPFN 531 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + GL + T+T VL + R Sbjct: 532 INSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQ-------- 583 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G+L+ T G + R P + H +Q +T Sbjct: 584 -----------IGKLQSTYI-EGLLKVTR-----------PDSHKVHTRFNQALTQTGRL 620 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++DP+ I +R + SE + AD + IE RVLA ++ ++ ++AF Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+VA +VT R K + + Y + G+ Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAG 737 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + ++ + E+ + A + ++ T Sbjct: 738 AFID------RYLESFQGVKAYMEDSVQEAKQKGYVTT---------------------- 769 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + +RR +P + + + RS R+ +NT Sbjct: 770 ---------------LMHRRRYIPELTSRNF---------NIRSFA------ERTAMNTP 799 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637 +Q + DI+ + M++ ++L VHDE++ E P Sbjct: 800 ------------------IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAP 841 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ +M + A +PLK + Sbjct: 842 KEEIEILEKLVPEVMEH--ALALDVPLKVD 869 >gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] Length = 901 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 87/533 (16%), Positives = 171/533 (32%), Gaps = 69/533 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK EN + + + F+R +L I ++ I +L A Sbjct: 376 LKNLFENASIRKIGQHLKFDRHILARY---GISLNGVIDDTMLMSYC-------YNSTAT 425 Query: 117 KLSSQKMEEG---KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + + K+ I E + + +Y D +T ++++ Sbjct: 426 RHNMDDLADFYLNKQTIRF----EDIAGSGAKQRRFDEIDLETAMQYACEDADITLQLYQ 481 Query: 174 ----RL--EP-----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +L EP + E+ L + + +G + +Q + + L ++ Sbjct: 482 FFQQKLASEPTLQALYENVERPLAEILWAMEHQGVKIAGDKLAVQSQELAAQLKTLQKQA 541 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 L G V + ++L+ LF L + T T Sbjct: 542 YQLAGG-VFNLDSPKQLQEILFERLALPVIHKTPTGQASTNEEV---------------- 584 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + A L+ + L E + L + + P P R H Q Sbjct: 585 LQKLAELRQSALPEII---------LNYRALGKLKSTYTDKLPELIDPDSKRVHTSYHQA 635 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T +SDP+ I +R IA EG ++ AD + IE R++A ++ ++ Sbjct: 636 VTSTGRLSSSDPNLQNIPIRSDEGRRIRQAFIAEEGYSILAADYSQIELRIMAHLSQDER 695 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF+ +D++ T A F+VAP V ++QR K + L Y A +A + Sbjct: 696 LQRAFQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIYGMSAF---GLARQLNI 752 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + + ++ + +G H++ Sbjct: 753 SRTQAAEYID--KYFHRYPQVLAYMDSARQTAQQQGYVSTLLGRRL-----YIPDIHNKN 805 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + G A K V + L++ LV+ Sbjct: 806 MQRRRAAERLAINAPMQGSAADIIKLAMVQFWQTYGAQKECRLLMQVHDELVF 858 >gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963] Length = 915 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 124/665 (18%), Positives = 204/665 (30%), Gaps = 158/665 (23%) Query: 25 AEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 A D A + L D + D P+ L EA A + A Sbjct: 372 ASDGECAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWA---------IHA 415 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + LA P + L + K + G+ L Sbjct: 416 LRGRGWTLGGLTSDTALAAYLVRPGQ-----RSFNLDDLSLRYLKRELRAETSGQEQLSL 470 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRG 196 D + EA + + + + LE LS E L I G Sbjct: 471 LDDTEQLDAEAAETAMLSAQAVLDLAAALGTELESIESKSLLSDMELPLTIELAQIEATG 530 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD A H L + + + + ++L+ LF E + T+ Sbjct: 531 IVVDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTK 589 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313 T + + L + F + A R A + ++ L++A+ DGR+ T Sbjct: 590 TGYSTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTT------ 643 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 +Q + ++DP+ I +R Sbjct: 644 -------------------------FNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGF 678 Query: 369 IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + +G L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + Sbjct: 679 VVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPE 738 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K M L Y A +AS ++ Sbjct: 739 LRRRVKAMSYGLAYGLSAY---GLASQLKISTEEA------------------------- 770 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ +R + + LH EQ ++G RR Sbjct: 771 -------------------KQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLYGRRRY- 810 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP LN+ RQ RE L I Q + Sbjct: 811 --------------LP---------------DLNSDNRQ-RREVAERAALNAPI-QGTAA 839 Query: 608 DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKG 660 DI+ M+N KA D ++L VHDE+V E ++ E +++ M + Sbjct: 840 DIIKVAMINVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LS 897 Query: 661 LPLKA 665 +PL Sbjct: 898 VPLDV 902 >gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001] gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001] Length = 913 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 123/687 (17%), Positives = 208/687 (30%), Gaps = 148/687 (21%) Query: 5 FIDFETRSPIDLTK--CGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 D ET S +T G+ E + A D PV+ D V+ LK Sbjct: 339 SFDTETTSLDPMTAQIVGLSFAVEAGHAAYVPVAHRGPDAPVQ---LPRDEVL-AKLKPW 394 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 LE+ V + ++ VL I TL+ + AL+ Sbjct: 395 LESAKHKKVGQHLKYDEQVLANYGIEMRGIE--HDTLLQSYVLESHRPHDMDNLALRHLG 452 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K + +++ + + A EY D +T + + L P + Sbjct: 453 VKTIKYEDVAGKGAQQ----------IGFDEVALDKAAEYAAEDADITLRLHQTLYPQLA 502 Query: 181 KEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E+ L ++ + I G +D + + +L+ E L G Sbjct: 503 AEKTLEHVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEIAARLIELESEAYVLAGG- 561 Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +++ F L + +T + VL + P + +R Sbjct: 562 EFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHR----- 616 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 G S+ P R H Q + Sbjct: 617 --------------------------GLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAV 650 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++DP+ I +R IA G KLV AD + IE R++A ++G++ L+ Sbjct: 651 TGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLR 710 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF GED++ T A F+V P +V+ DQR + KV+ L Y + +AS G+ + Sbjct: 711 AFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSF---GLASNLGITRD 767 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + R+M E A ++ T R + + + Sbjct: 768 AAKLYID-----RYFARYPGVARYMDETRL-SAKAKGYVETVFGR-RLWLPEINGGNGPR 820 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +A G A K + Sbjct: 821 RQAAERAAINAPMQGTAADLIKLSMI---------------------------------- 846 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 ++ E G ++ I+Q VHDE++ E PD + Sbjct: 847 --AVQKWIEESNIGTRM---IMQ------------------------VHDELILEVPDEE 877 Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAE 666 L LM A +PL AE Sbjct: 878 LPEVRKRLPELMCGVA--ALKVPLVAE 902 >gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 878 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 105/623 (16%), Positives = 203/623 (32%), Gaps = 149/623 (23%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVL-----ARS 102 D +KE E+ + + + + +L +D +P + L + Sbjct: 351 DEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAK-LGIDGALPYDDIMLMHYLIDPSRSSY 409 Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIAR----FCKGETHECLYDRNKPNHREAWRLFG 158 + + + + + +GK+ + F K + + +L Sbjct: 410 DMKTLSQSYLDYEVNNPEDLLGKGKKALKYEDLDFDK--LGNFMASEINAIYDAKDKLVD 467 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + + +++K E EL + + G+ D + L + +D + +L Sbjct: 468 KLNEY---HMYDLYK------EIEIELSKVLADMEIVGFVTDRKVLEELKEGIDADIDEL 518 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQ 275 QE+ L+ G + ++L LF + L + T+T T VL + + Sbjct: 519 TQEIYELS-GSEFNINSTKQLGEVLFKDLELPVIKKTKTGFSTDASVLEKLRDKHQIIPK 577 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R + + L +A++ DGR+R T + QN+ Sbjct: 578 IERYR-ELFKLRSTYIEGLEKAIDYDGRIRSTFR-----------------QNI------ 613 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 + DP+ + +R A EGK L+ AD + IE R+LA Sbjct: 614 --------AATGRLSSQDPNLQNLPIKTDEGRLIRKAFKAEEGKILIDADYSQIELRILA 665 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++G++ + AF +D++ T ++ F+ +VTK QR+ K + + Y + Sbjct: 666 SLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTKRQRSEAKAVNFGIIYGISDYGLSQ 725 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 ++ + A + ++ E A ED ++ T Sbjct: 726 ---NLNISRKEAKEYIDNYMASYP------SIKEYMDSIVEKAKEDGYVETLF------- 769 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++RR VP + + R+ Sbjct: 770 ------------------------------KRRRYVPEI--------------NSRNFNV 785 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDI 624 R G R LNT +Q + DI+ M + K I Sbjct: 786 RSFGQ-RVALNTP------------------IQGTAADIIKIAMIETYKNLKKEKIDAKI 826 Query: 625 VLTVHDEIVCETPDTDEFNASML 647 +L +HDEI+ E DE A + Sbjct: 827 ILQIHDEIILEASKEDEDRAIEI 849 >gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] Length = 881 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 116/639 (18%), Positives = 204/639 (31%), Gaps = 160/639 (25%) Query: 57 LKEALENTDVTIVAHNSYFER--TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE LENT + + F+R +L L I + R LA+ + Sbjct: 363 FKEFLENTALKVY----DFKRSKVLLSR---LGIELSRPAFDSRLAKYLLSTVDNNEIVT 415 Query: 115 ALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----- 168 L K+ E + + + K R P + Sbjct: 416 IAGLYGKTKLAEDEAVYGKGAK---------RALPEKAILLSHLARKVTVLIETEKPMTD 466 Query: 169 -REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 +L L EQ L ++ + G V+ T+ + T+L QE+ L Sbjct: 467 LLRQHDQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQAENERILTRLTQEIYDLA- 525 Query: 228 GLVSSSRCLEKLKTWLFLETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + GL T+T VL + P ++ + R Sbjct: 526 GEEFNINSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQI 585 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L + + +DG++ H Q Sbjct: 586 AKIQSTY-VMGLQDWILADGKI-------------------------------HTRYLQD 613 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396 +T + DP+ I +R + E L+ +D + IE RVLA ++G++ Sbjct: 614 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISGDK 673 Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF G D++ +T R FN+ P VT + R K + + Y +A+ Sbjct: 674 HLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRRNAKAVNFGVVYGISDF---GLANNL 730 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + T Sbjct: 731 GISRKEAKSYIDTYF--------------------------------------------E 746 Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + N + + + G + +RR++P + + R+ R Sbjct: 747 RYPGIKNYMENVVREARDKGYVETLFHRRREIPDI--------------NSRNFNVRGF- 791 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628 R+ +N+ +Q + DIL M+ +A D ++L V Sbjct: 792 AERTAINSP------------------IQGSAADILKIAMIRLGQALIDGNFKTRMLLQV 833 Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 HDEIV E P+ + L +M S +PLKA+ Sbjct: 834 HDEIVLEVPENELTAIKALVKDIMESAIE--LSVPLKAD 870 >gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] Length = 881 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 101/664 (15%), Positives = 203/664 (30%), Gaps = 154/664 (23%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ FA+ + + + + L++ L + T ++ L Sbjct: 335 EIVGFAWSNGNR----IYVTDNLSLLEDNALQDWLFDAKRTKSVFDAKRTTVALHRYVG- 389 Query: 87 DIPIHRWICTLVLARSN----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + +LA + L V L+ + +E + + K + L Sbjct: 390 --SPNGIQFDSLLACYLLDTNDSSNDLALVAHRYGLTEIETDE--AVYGKGAK----KGL 441 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVD 200 + N+ + R K D ++ E+ ++ E L ++ + G VD Sbjct: 442 PEDNERFYSHLARKVATMQKLDTKLSDELVEKGQWTLYKEMELPLSFILAEMEITGIHVD 501 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + + +++++ + + ++L LF + GL + T+T Sbjct: 502 AQRLIAMKSEFATKLHDIEEKIYAQA-NERFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560 Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 VL K P + R A + + L+ + SDG++ Sbjct: 561 TAVDVLEQLKVQAPIVEDILTYRQIAKIQSTY-VEGLLRMIQSDGKV------------- 606 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS- 371 H Q +T + DP+ I +R + Sbjct: 607 ------------------HTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQAFVPRN 648 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 + + +D + IE RVLA ++ ++ AF G+D++ +T R F + VT + R Sbjct: 649 KNWVIYSSDYSQIELRVLAHISKDEHLQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRR 708 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y + G+ + T Sbjct: 709 QAKAVNFGIVYGISDYGLSQ---NLGITRKQAQQYIDTYF-------------------- 745 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLV 549 R + + EQ ++G + +RR +P + Sbjct: 746 ------------------------ERYPGVKAYMENVVEQAKKDGYVETLYHRRRYLPDL 781 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 Y K + RS R+ +N+ +Q + DI Sbjct: 782 YAKNY---------NIRSFA------ERTAINSP------------------IQGSAADI 808 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLP 662 L M+ K ++L VHDE+V E P+ + + L +M + A +P Sbjct: 809 LKIAMIEMNKRLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVKEVMEHAVTLA--IP 866 Query: 663 LKAE 666 L + Sbjct: 867 LVTD 870 >gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] Length = 920 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 93/546 (17%), Positives = 181/546 (33%), Gaps = 77/546 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-----LKEALENTDVTI 68 ID G+ + + +I +F + D + + + + LE D+ + Sbjct: 354 IDFETTGLDTFKD--TIIGISFAIKSNEAFYLDLSGRTKIDKDKCMNLVFDTLEKEDIKV 411 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + HN +E +++A + I ++A P+ M++ Sbjct: 412 IGHNLKYEYKMMRA---IGKSIGNMYFDTMVAAYLINPTR----------GRYNMDDLA- 457 Query: 129 LIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----- 181 IA N K + EY D VT ++ PL Sbjct: 458 -IAYLSYNTIKYADLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLED 516 Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + + G + L+ K +++ G + + Sbjct: 517 LFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYKEA-GEEFNLQSP 575 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+ LF + G+ T+T +L S K+ Sbjct: 576 KQLEYILFDKMGIPPTKKTKTGFSTDEEVLTEL----------------SQKYKIAEY-- 617 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 L + ++ VFP + R H +Q +T +S+P+ Sbjct: 618 ----------MLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNL 667 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R+ I +G L+ AD + IE R+LA + + ++AF+ +D++ Sbjct: 668 QNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKNNDDIHRK 727 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + ++V+ VT R I K++ ++ Y A ++ G+ +K Sbjct: 728 TAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAF---GLSKELGIKRKEAEDFIK--GY 782 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + FC E E F+ T C R++ + +S + NE + T Sbjct: 783 FSTYSRVKPFC----EEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNT 838 Query: 532 IENGKA 537 + G A Sbjct: 839 LIQGSA 844 >gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1] gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1] Length = 875 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 89/541 (16%), Positives = 184/541 (34%), Gaps = 71/541 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110 + K+ +E+ +++ L+ I + L+L PS Sbjct: 355 EAFKKWVEDESKIKHVYDAKRSIVALRRY---GIDLRGTDFDLLLVSYLLNPSDTVEDFA 411 Query: 111 AVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 +V + + + +E + + K E Y + EA E C T+ Sbjct: 412 SVAKTHDYGNVETDE--AVYGKGAKRKLPEEKRYAEHISRKAEAIDALCEPC------TK 463 Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + LE E L + + G VD + + + +++Q + S+ Sbjct: 464 ALKNNGQLELFEQLELPLSLILADMEYTGVKVDTDRLKEMGEEFKLRLHEIEQRIYSMA- 522 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L LF + GL + T+T VL + ++ + R Sbjct: 523 GTEFNINSPKQLGVILFEKMGLPVIKKTKTGYSTSADVLEKLEPAHEIVREILHYRQL-G 581 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L++ ++ DG++ H +Q +T Sbjct: 582 KLQSTYIEGLLKVVHQDGKV-------------------------------HTRFNQALT 610 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I +R + SE G + +D + +E RVLA ++G++ Sbjct: 611 QTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPSEEGWLIFSSDYSQVELRVLAHISGDEKL 670 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF G D++ T F+V +VT + R K + + Y + G++ Sbjct: 671 IEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNFGIVYGISDYGLSQ---NLGIS 727 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +K A + + A + ++ T +R ++ + SR Sbjct: 728 RKEAGEFIKRYFASYP------RVKEYMDEIVREAKQKGYVSTLLKR-RRYLPEITSRNF 780 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVYRDVGNNR 577 L + + T G A K+ + + +KK+K L+L L++ Sbjct: 781 NLRSFAERTAMNTPIQGSAADIIKKAMIDMAKRLKKEKLRARLLLQVHDELIFEAPEEEI 840 Query: 578 S 578 Sbjct: 841 E 841 >gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354] Length = 955 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 111/636 (17%), Positives = 188/636 (29%), Gaps = 138/636 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V V N ++ VL I + T++++ + + +G Sbjct: 421 LKPLLESDAVVKVGQNIKYDLNVLARH---GIAVAPIEDTMIVSFALDAGRSQDGIGGGH 477 Query: 117 K---LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L+ + + C + P EY D VT ++ Sbjct: 478 GMDELAQRHLGHTCLTFKEIC------GTGKKAIPFGEVPIDRATEYAAEDADVTSRLYT 531 Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P + E + L + + G VD L++ E +L+ E+ Sbjct: 532 HLKPRLAVEGGTRIYERVDRPLIPVVAGMERHGIKVDRQQLAALSERFARETARLEGEIH 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKL-TPQAIQVFN 278 + G + ++L LF + G +T Q VL P A +V Sbjct: 592 EIA-GQEFTVGSPKQLGDILFDKMGYKGGKKGKSGQYSTDQSVLEKLDATGAPIATKVLE 650 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + P+ +R H Sbjct: 651 WRQLA-------------------------------KLKSTYTDALQQAINPKTNRVHTS 679 Query: 339 LDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + ++DP+ I I +R +A EG L+ AD + IE R+ A MA Sbjct: 680 YSLVGAQTGRLSSTDPNLQNIPIRTEIGREIRQAFVADEGNVLLAADYSQIELRLAAHMA 739 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +AF GED++ T F V +D RA K + A+ Y +A Sbjct: 740 DVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILYGIS---RWGLAG 792 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + L+ A + + + E E G K + + Sbjct: 793 RLGIEADEAQDLIDIYFAR--FPGIQRYIVNTMETVRECGYSQTLFGR-----KTWFPRI 845 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 +S+ +A G + KR + Sbjct: 846 NSKNQAERQGSERAAVNAPIQGTSADIIKRAMARM------------------------- 880 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633 G L E ++ + D G ++L VHDE+V Sbjct: 881 --------------------GPALAEAGLKPDAPD------------GVRMLLQVHDELV 908 Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWA--KGLPLKAE 666 E P+ A ++ +M A +PL E Sbjct: 909 FEMPEGLVEQAKPVIRSVMADAAGPAVELSVPLGVE 944 >gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As] Length = 922 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 95/535 (17%), Positives = 169/535 (31%), Gaps = 103/535 (19%) Query: 6 IDFETRSPIDLT----------KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP- 54 ID ET S + G Y + A + P +P Sbjct: 350 IDTETDSLDPMRARLIGISLSVTPGEAAY------LPLAHAYPGAP---------EQLPM 394 Query: 55 ----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPS 107 + L+ LEN D + N+ ++R V N + I + +L P Sbjct: 395 AEVLERLRPWLENADKPKLGQNAKYDRHV---FANAGVTIRGYAHDTLLESYVIEAHKPH 451 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 +L ++ L +++ + K T + + A + Y D + Sbjct: 452 SLDSLVSRH-LGRDDTLSYEQVCGKGAKAITFDQV----------ALDVATRYSGEDADL 500 Query: 168 TREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T ++ +RL P E ++ + Q I G VD L + + + Sbjct: 501 TLQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQT 560 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273 L+ + L G + +++ LF L ++ T +T + VL + P Sbjct: 561 LEAQAFELAGG-AFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLP 619 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 R L S+ P P Sbjct: 620 -------------------------------RVILDHRSLSKLKSTYTEKLPQMINPDTG 648 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q + ++DP+ I +R +A +G + +D + IE R+ Sbjct: 649 RVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPKGWLIASSDYSQIELRI 708 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ + L AF GED++ T A F V +V+ DQR + KV+ L Y A Sbjct: 709 MAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTSLEVSSDQRRMAKVINFGLIYGMSAF-- 766 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 +A GL + + A + + ++ E + G Sbjct: 767 -GLARNLGLERSAAQLYIDRYFAR--YPGVAAYMERTRKLAAEQGYVETVFGRRL 818 >gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] Length = 1032 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 97/635 (15%), Positives = 186/635 (29%), Gaps = 138/635 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111 L+ L++ + + N F +L + + +++ L A Sbjct: 504 DALRPLLDSAGLAKIGFNIKFTAVLLAQH---GVTLRNIDDVQLISYVLDAGRGSHGLDA 560 Query: 112 VGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E+ L + + + EY V Sbjct: 561 LSESNLGHTLHVLGAL-------------TGSGKAKIAFDQVPIDRATEYGGERSDVALR 607 Query: 171 IFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 +++ L+P E+ L + + RG +D + L+ +++ Sbjct: 608 LWRVLKPRLVAERMMAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEA 667 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 E+ L G + ++L LF + GL T+T + + F Sbjct: 668 EIRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFP-- 724 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R L + S+ P P+ R H Sbjct: 725 ------------------------RKILDWRQVSKLRSTYTDALPTYVHPQTQRVHTTYA 760 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T +++P+ I +R +A+ G +LV AD + IE R+L+ +A Sbjct: 761 LAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHRLVSADYSQIELRLLSEVADV 820 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 KAF+ G D++ T + F V + D R K + + Y A +A+ Sbjct: 821 PALRKAFQDGIDIHAMTASEMFGVPVEGMPSDIRRRAKAINFGIIYGISAF---GLANQL 877 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ +K E + + ++ H + Sbjct: 878 GIPREEAGAYIK--RYFERFPGIRAYMDETRDFCRTHGYVE------------------- 916 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + ++ P + PS R+ R N Sbjct: 917 ----------------------TLFGRKCHYPDIKASN---------PSIRAFNERAAIN 945 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R G + I +A+ R E + K ++L VHDE++ E Sbjct: 946 ARL---------------QGSAADIIRRAMVR---MEDALAEKKLAAQMLLQVHDELIFE 987 Query: 636 TPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 P+ + ++ H+M P A +PL+ + Sbjct: 988 VPEDEVTATLPVVSHVMQDAPFPAVILNVPLQVDA 1022 >gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400] gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400] Length = 913 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 117/650 (18%), Positives = 199/650 (30%), Gaps = 146/650 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 D PV+ D V+ LK LE+ V + ++ VL I TL+ Sbjct: 377 DAPVQ---LPRDEVL-ARLKPWLESAGHKKVGQHLKYDEQVLANYGIEMRGIE--HDTLL 430 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + AL+ K + +E+ + + +D A Sbjct: 431 QSYVVESHRTHDMDSLALRHLGVKTIKYEEVAGKGAG----QIGFD------EVALDKAA 480 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207 EY D +T + + L P + E+ L Y+ I G +D Sbjct: 481 EYAAEDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQ 540 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263 + + +L+ E L G + +++ F + L + +T + VL Sbjct: 541 SSEIATRLIQLESEAYVLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVL 599 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + +R G S+ Sbjct: 600 QKLAEDFPLPKILLEHR-------------------------------GLSKLKSTYTDK 628 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P R H Q + ++DP+ I +R IA G KLV Sbjct: 629 LPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPAGHKLVS 688 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ L +F GED++ T A F+V P +V+ DQR + KV+ Sbjct: 689 ADYSQIELRIMAHISGDESLLHSFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFG 748 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y + +AS G+ + + + R+M E A + Sbjct: 749 LIYGMSSF---GLASNLGITRDAAKLYID-----RYFARYPGVARYMDETRV-SAKAKGY 799 Query: 499 IGTACERVKKAW-RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + T R + W + + +A G A K + Sbjct: 800 VETVFGR--RLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMI----------- 846 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 ++ E G ++ I+Q Sbjct: 847 -------------------------AVQKWIEESKIGTRM---IMQ-------------- 864 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 VHDE++ E PD + + L LM +PL AE Sbjct: 865 ----------VHDELILEVPDAELSDVRKRLPELMCGVAD--LKVPLVAE 902 >gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis] Length = 880 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 102/630 (16%), Positives = 201/630 (31%), Gaps = 137/630 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPS-ALKAV 112 +V KE +EN + +S R V+ +++ +LA P + V Sbjct: 359 EVFKEWVENDEQKKWVFDSK--RAVVALRWQGIEL--KGAEFDTLLAAYIINPGNSYDDV 414 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 K + E + + KG + H L + + + E Sbjct: 415 ASVAKDYGLHIVSSDESV--YGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENN 472 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +LE E L + + G VDV + + + + + ++++ + G + Sbjct: 473 DQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIA-GEPFN 531 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + GL + T+T VL + R Sbjct: 532 INSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQ-------- 583 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G+L+ T G + R P + H +Q +T Sbjct: 584 -----------IGKLQSTYI-EGLLKVTR-----------PDSHKVHTRFNQALTQTGRL 620 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++DP+ I +R + SE + AD + IE RVLA ++ ++ ++AF Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+VA +VT R K + + Y + G+ Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAG 737 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + ++ + E+ + A + ++ T Sbjct: 738 AFID------RYLESFQGVKAYMEDSVQEAKQKGYVTT---------------------- 769 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + +RR +P + + + RS R+ +NT Sbjct: 770 ---------------LMHRRRYIPELTSRNF---------NIRSFA------ERTAMNTP 799 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637 +Q + DI+ + M++ ++L VHDE++ E P Sbjct: 800 ------------------IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAP 841 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ +M + A +PLK + Sbjct: 842 KEEIEILEKLVPEVMEH--ALALDVPLKVD 869 >gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42] gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42] Length = 879 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 93/629 (14%), Positives = 194/629 (30%), Gaps = 135/629 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG 113 + K E+ + +S L +++ +LA P + V Sbjct: 358 ETFKSWAEDESMKKWVFDSKRSVVAL-RWQGIEL--KGTEFDALLAAYIINPGNSYDDVA 414 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 K + + A + KG ++ +H + + E Sbjct: 415 SVAK--EYGLNIVSKDEAVYGKGAKRAVPAEKELADHLARKASAVNSLRDKLLHALEENN 472 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 +LE E L + + G VDV + + + + + ++++ + G + Sbjct: 473 QLELYEDLELPLALILGEMESMGVKVDVERLKRMGEELKAKLKEYEEKIHDIA-GEPFNI 531 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF + GL T+T VL + R + Sbjct: 532 NSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLADKHDIVAHILQYRQ-IGKLQSTY 590 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ D + H +Q +T Sbjct: 591 IEGLLKVTRKD------------------------------SHKVHTRFNQALTQTGRLS 620 Query: 351 TSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R + SE + AD + IE RVLA ++ ++ ++AF Sbjct: 621 STDPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTN 680 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 D++ T F+V+ +VT+ R K + + Y + G+ Sbjct: 681 DMDIHTKTAMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAGA 737 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + ++ + E + A + ++ T Sbjct: 738 FID------RYLESFPGVKAYMEESVQEAKQKGYVTT----------------------- 768 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + ++RR +P + + + RS R+ +NT Sbjct: 769 --------------LMQRRRYIPELTSRNF---------NLRSFA------ERTAMNTP- 798 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPD 638 +Q + DI+ + M++ ++L VHDE++ E P Sbjct: 799 -----------------IQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPK 841 Query: 639 TD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ +M + A +PLKA+ Sbjct: 842 EEIEILEKLVPEVMEH--ALALDVPLKAD 868 >gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642] gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY] gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis] gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] Length = 880 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 102/630 (16%), Positives = 201/630 (31%), Gaps = 137/630 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPS-ALKAV 112 +V KE +EN + +S R V+ +++ +LA P + V Sbjct: 359 EVFKEWVENDEQKKWVFDSK--RAVVALRWQGIEL--KGAEFDTLLAAYIINPGNSYDDV 414 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 K + E + + KG + H L + + + E Sbjct: 415 ASVAKDYGLHIVSSDESV--YGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENN 472 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +LE E L + + G VDV + + + + + ++++ + G + Sbjct: 473 DQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIA-GEPFN 531 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + GL + T+T VL + R Sbjct: 532 INSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQ-------- 583 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 G+L+ T G + R P + H +Q +T Sbjct: 584 -----------IGKLQSTYI-EGLLKVTR-----------PDSHKVHTRFNQALTQTGRL 620 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++DP+ I +R + SE + AD + IE RVLA ++ ++ ++AF Sbjct: 621 SSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFT 680 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+VA +VT R K + + Y + G+ Sbjct: 681 NDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAG 737 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + ++ + E+ + A + ++ T Sbjct: 738 AFID------RYLESFQGVKAYMEDSVQEAKQKGYVTT---------------------- 769 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + +RR +P + + + RS R+ +NT Sbjct: 770 ---------------LMHRRRYIPELTSRNF---------NIRSFA------ERTAMNTP 799 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637 +Q + DI+ + M++ ++L VHDE++ E P Sbjct: 800 ------------------IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAP 841 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ +M + A +PLK + Sbjct: 842 KEEIEILEKLVPEVMEH--ALALDVPLKVD 869 >gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805] gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805] Length = 988 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 97/541 (17%), Positives = 173/541 (31%), Gaps = 126/541 (23%) Query: 155 RLFGEYCKGDVTVTREI------------FKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 YC DV +TR++ + L E L + + G +D+ Sbjct: 534 DQAALYCAMDVHLTRKLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLT 593 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTC- 259 TL++ + T+L+ + G+ + ++L LF GL + T+T Sbjct: 594 YLDTLSKEMGETLTRLEANAKQ-AAGVDFNLASPKQLGELLFETLGLDRKKSRRTKTGYS 652 Query: 260 --QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 VL P V +R+ S+ Sbjct: 653 TDATVLDKLADDHPVVPLVLEHRVL-------------------------------SKLK 681 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372 P R H + +Q +T +S+P+ I S +R + E Sbjct: 682 STYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEYSRRIRKAFLPQE 741 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ AD + IE R+L ++GE+ +A+ G+D++ T + ++T D+R +G Sbjct: 742 HWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LDKDEITADERRLG 799 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y GA Q+ A TG++ + + E + F E Sbjct: 800 KTINFGVIYGMGA---QRFARETGVSQAEAKEFL--SKYRERYPKVFAFL----ELQERL 850 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 A+ ++ T R + Sbjct: 851 ALSRGYVETILGRRRP------------------------------------------FH 868 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 D+N L +L ++ + + Q R +Q S DI+ Sbjct: 869 FDRNGLGRLLGKD----PFEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKL 918 Query: 613 GMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 M+ A ++L VHDE+V E P E +++ M + +PL A Sbjct: 919 AMIQLQAALQQQSLPARLLLQVHDELVLEVEPSALEDVKALVVSTMETAVE--LSVPLVA 976 Query: 666 E 666 E Sbjct: 977 E 977 >gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] Length = 889 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 112/635 (17%), Positives = 200/635 (31%), Gaps = 150/635 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + +AL D+ H+ T+L + ++ +A L + Sbjct: 370 VLKALFAADIKKNTHDVK---TLLSRLLEEGVEGDGFVFDTAIAAYL-----LAPTDGSY 421 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTVTREIFKR 174 +L + F K + D P + L G +C + + + R Sbjct: 422 ELEKLGITYFN---QEFAKAKDTYLAPDAFSPLADQTAVLGGMLSHCALIGALKKVLAPR 478 Query: 175 LEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 LE L E L + + G VD ++D E+ L G Sbjct: 479 LEELGMHQLYYDIELPLCQVLSAMEHAGMLVDRKALSEFGDMLDERIAADQAEIYELA-G 537 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL T+T VL + P ++ R Sbjct: 538 ETFNINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGQHPIIDKILEYRQYTKL 597 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + ++ L + + DG R H +T Sbjct: 598 KSTY-VDGLGKVIAPDG-------------------------------RIHTSFQNTVTA 625 Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I + +R +A GK LV AD + IE R+LA +AG++ ++ Sbjct: 626 TGRLSSTEPNLQNIPVRTELGAELRKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIE 685 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF TGED++ T A+ F V QVTK R+ K + + Y A + + Sbjct: 686 AFRTGEDIHTVTAAQVFGVPVDQVTKHMRSSAKAVNFGIVYGISAFSLSQD--------- 736 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 IG K+ + +R S + Sbjct: 737 --------------------------------------IGVPTYEAKEYIEKYFARFSGV 758 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + +G RR LP +S + Sbjct: 759 HAYMTDVVNRAKTDGYVSTLFGRR---------------RWLPELKSSNFN--------- 794 Query: 581 NTTTRQLTREYTYGGKLTENI-VQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 ++G ++ N+ +Q + DI+ M++ ++L VHDE++ Sbjct: 795 ---------TRSFGERVALNMPIQGTAADIMKLAMLHVHSRLREEGLQARLILQVHDELI 845 Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEG 667 E P+ + ++L M S A +PL A+ Sbjct: 846 VECPEEEAETVKALLSREMESVAQLA--VPLIADA 878 >gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB] gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB] Length = 901 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 96/642 (14%), Positives = 189/642 (29%), Gaps = 143/642 (22%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 + V P VL L + + +V H+ VL + + + ++A P Sbjct: 369 LSEEQVFP-VLFPFLADKKIALVGHDLKTVLIVLSQ---KGVKVQNPLLDTMVAAYILNP 424 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + + + + + + L + G + + P ++ V Sbjct: 425 AR-RGYELSEIVQDYLHRQVEPLRKKLVGGSSPKQSPASFPP------ERLRDFACRRVE 477 Query: 167 VTREIFKRL-EPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 E+ L E + E L + + ++G +D+ L ++Q + + Sbjct: 478 AIGELASTLIEKMEETGLRELFDSVEMPLVAVLAAMEEKGVLLDLHLLKEMSQELGHLLS 537 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 + ++ +L G + ++L+T LF + L T+ + L Sbjct: 538 LSEAKIYALA-GERFNIASPKQLQTILFEKLNLPKGKKTKGGYSTDVEVLSNLALNHELP 596 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 L + ++ P R R H Sbjct: 597 AE----------------------------ILAYRSMAKLKSTYIDALPSLINIRTGRIH 628 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 +Q + +S+P+ I +R IA G +V AD + IE RVLA Sbjct: 629 TSYNQTVAATGRLSSSNPNLQNIPIRTLEGKRIRQAFIAPPGWAIVSADYSQIELRVLAH 688 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ + + AF GED++ T A F V P + + R KV+ + Y A + Sbjct: 689 LSEDPVLINAFAAGEDIHSRTAADVFGVFPEMINAEMRRQAKVINFGVLYGMSAF---GL 745 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + G+ + + + + + A E ++ Sbjct: 746 SRELGIPQKQAQAYIDG------YFKKYESVKTYLDGILQQARERGYV------------ 787 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + +RR +P + P+ R L Sbjct: 788 -------------------------TTLLNRRRYLPEINSVN---------PAVRQLA-- 811 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 R +N +Q + D++ M+ + Sbjct: 812 ----ERMAINAP------------------IQGTAADLIKMAMLRIADLIREKGMKSAMT 849 Query: 626 LTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 + VHDE+V E P ++ L M +PLK + Sbjct: 850 MQVHDELVFEVPQEEKIALMNLVRQEMEGVVE--LKVPLKVD 889 >gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] Length = 885 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 82/501 (16%), Positives = 152/501 (30%), Gaps = 129/501 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + G V++ + ++ L + + L G + ++L Sbjct: 483 ELPLTRVLGAMESYGVAVNMETLDLMGIELEGGLAALTEAIYELA-GEEFNLNSPKQLAV 541 Query: 242 WLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL T+T VL P A ++ R A Sbjct: 542 ILFEKLGLPPVKRTKTGFSTDAAVLEELACRHPIAAKLVEYRQLA--------------- 586 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + P PR H +Q +T +S+P+ Sbjct: 587 ----------------KLKSTYVDGLKPLVNPRTGSLHTSFNQTVTATGRLSSSEPNLQN 630 Query: 359 I-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I + +R + G+ L+ AD + IE R+LA ++G++ + AF GED++ T Sbjct: 631 IPVRLELGRRLRKAFVPHGPGRLLLAADYSQIELRILAHISGDEAMIAAFRRGEDIHART 690 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A F V +VT R K + + Y ++ G++ + ++ Sbjct: 691 AAEVFGVPLGEVTPAMRRSAKAVNFGIVYGISDY---GLSRDLGISRSEAHDYIE----- 742 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + R + L + + Sbjct: 743 ---------------------------------------RYFRRYRGVKAYLEEIVARAR 763 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + G RR L + S R++ R+ +NT Sbjct: 764 QEGYVTTLLGRRRY-----------LPDLFSSNRNVRSF---GERTAMNTP--------- 800 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM 646 +Q + DI+ M+ + ++L VHDE++ + PD D + Sbjct: 801 ---------IQGTAADIIKMAMVKIFRLLEAQYPAARMILQVHDELIFDVPDDDLPAVAG 851 Query: 647 LYH-LMTSNPSWAKGLPLKAE 666 L M +PL+ + Sbjct: 852 LVKDTMEHTLE--LQVPLQVD 870 >gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] Length = 937 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 95/640 (14%), Positives = 171/640 (26%), Gaps = 155/640 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGE 114 LK LE+ + + N ++ + PI + + A +G + Sbjct: 414 LKPVLEDDAILKIGQNMKYDAKIFARHGIRVAPIDDTMLMSYAMHAGRHGHGMD-ELCDT 472 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L I + +DR Y D VT +++ Sbjct: 473 YLGHKPIA-------IKTLLGSGKSQITFDR------VPVDQAVCYAAEDADVTLRLWRL 519 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +P + E+ L + + G VD ++ + L+ E+ Sbjct: 520 FKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAALEAEIHG 579 Query: 225 LTYGLVSSSRCLEKLKTWLFLET----GLHLEDLTETTCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF G+ ++ T VL +V + Sbjct: 580 LAGG-PFNVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P R H Sbjct: 639 RQL-------------------------------SKLKSTYTDALQEHIHPETGRVHTSY 667 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + ++DP+ I +R +A +GK LV D + IE R+LA +A Sbjct: 668 SIAGANTGRLASTDPNLQNIPVRTEEGRRIREAFVAPKGKLLVSVDYSQIELRILAHIAD 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF G D++ T A FNV + R K + + Y +A Sbjct: 728 IPALKQAFREGHDIHAMTAAEMFNVPLEGMDPMVRRQAKAINFGVIYGISGF---GLARN 784 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + DA+ F E P R Sbjct: 785 LRIPR----------------ADAQGFIDRYFERFP------------------GIRAYM 810 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + + + R+ + P + Sbjct: 811 DETVAF--------AKAHGFVQTLFGRR-----------------INTPEINAKGPGAGF 845 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHD 630 R+ +N +Q + D++ M+ KA ++L VHD Sbjct: 846 ARRAAINAP------------------IQGTAADVIRRAMIRMPKALDGLPAKMLLQVHD 887 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667 E++ E + + + +M S A +PL + Sbjct: 888 ELLFEVDEAAADPVIARVREVMESASEPAVKLSVPLTVDA 927 >gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115] Length = 880 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 117/668 (17%), Positives = 214/668 (32%), Gaps = 165/668 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85 ++ A+G D + + D + P+ + L K AL+ D+ VL + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144 +++P LA+ + +L Q + E+ + K Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436 Query: 145 RNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYC 198 R P + + + + +L+ L EQ L ++ + G Sbjct: 437 RALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAGIK 496 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256 V+ + + L QE+ L G + ++L T LF + GL LE T+ Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555 Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 H Q +T + DP+ I +R Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643 Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A+ G++ ++T Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF---------------- 744 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRD 545 R + N + + + G I +RR Sbjct: 745 ----------------------------ERFPGIKNYMETIVREARDKGYVETIYHRRRS 776 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 +P + + R+ R+ R+ +N+ +Q Sbjct: 777 LPDI--------------NSRNFNIRNF-AERTAINSP------------------IQGS 803 Query: 606 SRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA 658 + DIL M+N +A ++L VHDEIV E P+ + L M + A Sbjct: 804 AADILKVAMINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA 863 Query: 659 KGLPLKAE 666 +PL A+ Sbjct: 864 --VPLVAD 869 >gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] Length = 942 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 101/640 (15%), Positives = 190/640 (29%), Gaps = 151/640 (23%) Query: 41 PVELWDCVHDPVMPQ---------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 PV+L PQ L + ++TI+ HN F+ ++ + Sbjct: 398 PVKLPPPELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPC 457 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 T++ A S + IA + + + K Sbjct: 458 AIFDTMIAAWLLDPDRT-----SFSLDSLASSLLKLQTIAY-------KDVVPKGKIFSD 505 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDV 201 + Y D +T + ++ L P + E L L + G + Sbjct: 506 VPYEQAVAYAAEDADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFLKK 565 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 ++ + E ++E+ + G + ++L+ LF E L T+T Sbjct: 566 EELAEFSEELGKEIIVHEREIFDI-VGHEFNIASPKQLQEVLFTELKLPTGKKTKTGYST 624 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 S + L + + L++ ++ Sbjct: 625 DTSVLEVLASEHVIPAK----------------------------ILEYRALTKLKSTYT 656 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 P + R H Q T + DP+ I +R A +GK L Sbjct: 657 DALPALAD-KNGRVHTSFIQTGTATGRLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNL 715 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD A IE +LA ++ ++ ++AF+ G D++ T A F + +V D R I K + Sbjct: 716 ISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTIN 775 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A ++++ + A ++T + + E E A Sbjct: 776 FGVMYGMSAF---RLSNALRIPRRQAADFIET------YFKTYSGVHIFMEELKESARRK 826 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ + ++ R+R +Y N Sbjct: 827 GYV------------------------------------ETLMGRRR----YIYAINSAN 846 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 L G R +NT +Q + DI+ M+ Sbjct: 847 KL------------EQAGAERVAINTP------------------IQGSAADIVKTAMLK 876 Query: 617 ATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL 650 A ++L VHDE++CE P+ + L Sbjct: 877 VQNALQAHKLQAKLLLQVHDELICEAPEKETETVKTLLRQ 916 >gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] Length = 935 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 88/566 (15%), Positives = 184/566 (32%), Gaps = 71/566 (12%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVAHNSYFERTVLKA 82 ++ +F + + ++ + LEN + +A N ++ V K Sbjct: 376 QAELVGMSFAYKSGEAYYVPVPAGKENAQAVVEIFRPVLENEKILKIAQNLKYDAIVFKW 435 Query: 83 CFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 + + ++A P A S + LI + K + + Sbjct: 436 Y---GVEVRGPYFDTMVAHYLLEPEMRHGMDYLAETYLSYSPISIEMLIGKKGKDQLNMS 492 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQT 191 D +Y D +T ++ + P + E L + Sbjct: 493 QID---------LEKVTDYAAEDADITLQLKELFAPKLEEGGVQELFDTIECPLIKVLAD 543 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G +D ++ ++++ L+Q + G+ + +++ LF + Sbjct: 544 LEYEGIRIDSDYLDVYSKELEIQIQTLEQSIYEQA-GVKFNIGSPKQVGDLLFERLKVPY 602 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 + T Q +K L ++ L F Sbjct: 603 KGAKTKTGQYSTDEDKLLELAPEFPI--------------------------IQTILNFR 636 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366 G ++ P PR R H +Q + +++P+ I VR Sbjct: 637 GLAKLKSTYVDALPKMVNPRTGRIHSSFNQALAATGRLSSNNPNLQNIPVRTPEGAKVRR 696 Query: 367 CVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 I + L+ AD + IE R++A ++G+ L+AF+ +D++ T A+ FNV VT Sbjct: 697 AFIPRDDQHTLLSADYSQIELRLIADISGDVAMLEAFQNNQDIHTATAAKVFNVPFDLVT 756 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 ++QR K + ++ Y GA + L+ + + + Sbjct: 757 REQRYQAKTVNFSILYGAGATNLS---RQLSIKRTEAKELIDA------YFALYSGLKGY 807 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E A ++ ++ T R ++ R+ +S+ S + + T G A K Sbjct: 808 MVTVVEDARKNGYVTTLMGR-RRYLREINSKSSLERSNAERVAVNTPVQGSAADMIKVAM 866 Query: 546 VPLVYMKKDKNNLI-LMLPSGRSLVY 570 V + ++ ++L LV+ Sbjct: 867 VNIHQALLEQGLKTKMILQVHDELVF 892 >gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087] Length = 880 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 117/666 (17%), Positives = 217/666 (32%), Gaps = 161/666 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G D + + D + P+ + L + T A VL + + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRA-------KVLLSHYGI 388 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145 ++P LA+ + +L Q + E+ + K R Sbjct: 389 ELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK---------R 437 Query: 146 NKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 P + + + + +L+ L EQ L ++ + G V Sbjct: 438 ALPEQEQLFEHLARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKV 497 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET 257 + + + L QE+ L G + ++L T LF + GL LE T+T Sbjct: 498 ERETLQGMQAENEKTLESLTQEIYDLA-GQKFNINSPKQLGTILFEDMGLPLEYTKKTKT 556 Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 VL + P ++ R S+ + L EA+ +DG+ Sbjct: 557 GYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK----------- 604 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369 H Q +T + DP+ I +R + Sbjct: 605 --------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV 644 Query: 370 ASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKD 427 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + Sbjct: 645 PEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPN 704 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y +A+ G++ ++T E + +N+ Sbjct: 705 DRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM----- 754 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 E + + R + + +TI +RR +P Sbjct: 755 ----------------ETIVREAR-------------DKGYVETI-------YHRRRSLP 778 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + R+ R+ R+ +N+ +Q + Sbjct: 779 DI--------------NSRNFNIRNF-AERTAINSP------------------IQGSAA 805 Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660 DIL M+N +A ++L VHDEIV E P+ + L M + A Sbjct: 806 DILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA-- 863 Query: 661 LPLKAE 666 +PL A+ Sbjct: 864 VPLVAD 869 >gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12] gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12] Length = 934 Score = 248 bits (633), Expect = 3e-63, Method: Composition-based stats. Identities = 95/529 (17%), Positives = 170/529 (32%), Gaps = 91/529 (17%) Query: 6 IDFETRSPIDLTKCGICKYAE----DVCVILFAFGFDDHPVELWDCVHDPVMP-----QV 56 ID ET S + + + + A + P +P + Sbjct: 362 IDTETDSLDPMRARLVGISLSVAPGEAAYLPLAHAYPGAP---------EQLPMAEVLER 412 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVG 113 L+ LEN D + N+ ++R V N + I + +L P +L ++ Sbjct: 413 LRPWLENADKPKLGQNAKYDRHV---FANAGVTIRGYAHDTLLESYVIEAHKPHSLDSLV 469 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L +++ + K T + + A + Y D +T ++ + Sbjct: 470 SRH-LGRDDTLSYEQVCGKGTKAITFDQV----------ALDVATRYSGEDADLTLQVHQ 518 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 RL P E ++ + Q I G VD L + + + L+ + Sbjct: 519 RLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQAF 578 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ LF L ++ T +T + VL + P Sbjct: 579 ELAGG-AFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLP------ 631 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R L S+ P P R H Sbjct: 632 -------------------------RVILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNY 666 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IA +G + +D + IE R++A ++ Sbjct: 667 AQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFIAPKGWLIASSDYSQIELRIMAHLSQ 726 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + L AF GED++ T A F V P +V+ DQR + KV+ L Y A +A Sbjct: 727 DAGLLAAFAAGEDIHRATAAEIFGVTPLEVSSDQRRMAKVINFGLIYGMSAF---GLARN 783 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 GL + + A + + ++ E + G Sbjct: 784 LGLERSAAQLYIDRYFAR--YPGVAAYMERTRKLAAEQGYVETVFGRRL 830 >gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114] gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114] Length = 933 Score = 248 bits (633), Expect = 3e-63, Method: Composition-based stats. Identities = 94/606 (15%), Positives = 174/606 (28%), Gaps = 111/606 (18%) Query: 46 DCVHDPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100 D MP ++LK LE+ + + N ++ V PI + + A Sbjct: 396 DLAEG-QMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQVGITVAPIDDTML-MSYA 453 Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 GL + + K L+ T + + Y Sbjct: 454 MHGGL-HGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKV----------PLSEAVPY 502 Query: 161 CKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D VT ++++ +P + E+ + + + G VD ++ Sbjct: 503 AAEDADVTLRLWQQFKPALHRAQVTKVYETLERPMVAVLADMERAGIKVDRDTLSRMSNA 562 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266 + L+ E+ +L G + ++L LF E GL +T T VL Sbjct: 563 FSQKMAALEDEVYTL-VGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDL 621 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 ++ + R S+ Sbjct: 622 ATEHELPRRILDWRQL-------------------------------SKLKSTYTDALQD 650 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H ++DP+ I +R +A EGK LV D Sbjct: 651 HINPDTGRVHTSYSIAGASTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGKTLVALDY 710 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R+LA +A AF+ G+D++ T + F+V ++T + R K + + Y Sbjct: 711 SQIELRILAHIADIPALKTAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 +A + + + E + + + EH + G Sbjct: 771 GISGF---GLARNLRIPRSEAQGFID--RYFERFPGIRAYMDDTKAFAKEHGYVETLFGR 825 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + + + +A G A +R + + I Sbjct: 826 RIHTPNIGAKGPQAGFAA------RAAINAPIQGTAADVIRRAMIRMP-------AAIAE 872 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 LP+ L D L + Q ++D L E + ++ Sbjct: 873 LPAKMLLQVHDE-----------------------LLFEVDQG-AQDALIEAARSVMESA 908 Query: 622 YDIVLT 627 D V+ Sbjct: 909 ADPVVH 914 >gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] Length = 880 Score = 248 bits (633), Expect = 3e-63, Method: Composition-based stats. Identities = 119/677 (17%), Positives = 219/677 (32%), Gaps = 171/677 (25%) Query: 28 VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75 ++ + + D V D + P+ + L K AL+ D+ Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQKFLTKTALKTYDLKRT------ 379 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134 VL + + +++P LA+ + +L Q + E+ + Sbjct: 380 --KVLLSHYGIELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILLTDDEVYGKGA 435 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYL 188 K R P + + + + +L+ L EQ L ++ Sbjct: 436 K---------RALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFV 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V+ + + L QE+ L G + ++L T LF + G Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545 Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L LE T+T VL + P ++ R S+ + L EA+ SDG+ Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIASDGK 604 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 + H Q +T + DP+ I Sbjct: 605 I-------------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRL 633 Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVF 693 Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + VT + R K + + Y +A+ G++ ++T E + Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +N+ E + + R + + +TI Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 +RR +P + + R+ R+ R+ +N+ Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799 Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649 +Q + DIL M+N +A ++L VHDEIV E P+ + L Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854 Query: 650 LMTSNPSWAKGLPLKAE 666 M + A +PL A+ Sbjct: 855 TMEAAIELA--VPLVAD 869 >gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A] gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A] Length = 955 Score = 248 bits (633), Expect = 3e-63, Method: Composition-based stats. Identities = 113/672 (16%), Positives = 215/672 (31%), Gaps = 143/672 (21%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQV-----LKEALENTDVT 67 D G+ + I +G + + + H + + L+ LEN Sbjct: 370 DTETTGLNPQTAKLVGISCCWGEEVNNIAYIPIEHKEGEQLSKEKVLEKLRPILENKCYP 429 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG- 126 V N+ F+R VL N I ++ + +LA P S K+ Sbjct: 430 KVFQNAKFDRLVL---LNQGIQLNGVVFDTMLASYVINPD-----------KSHKLSSLC 475 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------PLSS 180 K+ + + E ++ + YC D T + K L+ P+ Sbjct: 476 KQYLTNISSQDYLELKINKQQTIADLDITQVANYCGMDAYSTFLLVKPLKKRLAEIPILE 535 Query: 181 K-----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 K EQ L + + ++G +D+ + L++ V L++++ + Sbjct: 536 KLFLEVEQSLEKVLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEKIYEEAK-EKFNLES 594 Query: 236 LEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF L + + +T +L K P + Sbjct: 595 PKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLKGDHPIIDYLLK------------ 642 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + S+ P + R H +Q +T Sbjct: 643 -------------------YRTLSKLQSTYIDNLPTLVSNQTHRIHTSFNQSVTSTGRLS 683 Query: 351 TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +S P+ I +S +R I+ + LV AD + IE R+LA ++ E +KA+ Sbjct: 684 SSKPNLQNIPIRTELSRKIRKAFISPKKWLLVSADYSQIELRILAHLSQEPLLVKAYCDC 743 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +D++ + F+ ++T ++R +GK + + Y G+ Q+ A G+ Sbjct: 744 QDIHTLSAQLLFDK--EEITIEERNLGKTINFGVIYGMGS---QRFAREAGVTPTKGKDF 798 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 +K + ++ F EN AI ++ T R + Sbjct: 799 IKKYH--QRYKKVFQFL----ENLKIEAITKGYVTTILGRRR------------------ 834 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 Y ++L + ++ + + + Sbjct: 835 ------------------------YFNFYSDSLR----NLYGCNPDEINLDELKYSYSDS 866 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETP-DTD 640 QL R +Q S DI+ M+ K ++L VHDE+V E P + Sbjct: 867 QLLRSAANAP------IQGSSADIIKVAMIKIEKLLRNYQAKLLLQVHDELVFEIPLEEL 920 Query: 641 EFNASMLYHLMT 652 E S + +M Sbjct: 921 EELQSEIKQIME 932 >gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83] gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83] Length = 926 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 95/619 (15%), Positives = 195/619 (31%), Gaps = 101/619 (16%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKEA 60 D ET S L A V + L A + D + +L+ Sbjct: 357 SFDTETDSKDALR-------ANIVAITLCA---ESGRAFFIPLPEDEEIGKRRLDLLRPL 406 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 +T + V N ++ VL I + + ++A P Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY---GIEVRGQLFDTMIAHYLLFPD-----------LR 452 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRLEPL 178 M+E E + +C + + + H + + +Y D +T ++++RL + Sbjct: 453 HNMDEMAETLLGYCTVHYSDLVGSDKQEVHIRQVPLQNLADYAMEDADITWQLYERLNAM 512 Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 S+ E L + + G +D + + E +++ E+ L G Sbjct: 513 LSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYRLA-G 571 Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++ T LF E + T++ T + +L ++ P Sbjct: 572 HSFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIV---------- 621 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R L + G + P P + H +Q + Sbjct: 622 ---------------------RLILDYRGIKKLLSTYVEALPEMRYP-DGKLHTSFNQTV 659 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQW 397 +S+P+ I +R+ + + AD + IE R++A ++ ++ Sbjct: 660 ATTGRLSSSNPNLQNIPIRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDES 719 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF GED++ T ++ + + +VT D R K + Y A + + Sbjct: 720 LIQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSE---RLNI 776 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + L++ A + + A ++ T R K+ R +S Sbjct: 777 SRTEAKALIEGYFASYP------GVKAYMDRSIAEAKRQGYVTTLFGR-KRFLRDINSAN 829 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGN 575 + + + G A K + ++ + + L ++L L + N Sbjct: 830 AVVRGYAERNAINAPIQGSAADLIKLAMIR-IHEEITERKLRSRMILQVHDELNF----N 884 Query: 576 NRSYLNTTTRQLTREYTYG 594 R+L R G Sbjct: 885 VLRPEAAEVRELVRSCMEG 903 >gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] Length = 1072 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 89/486 (18%), Positives = 146/486 (30%), Gaps = 128/486 (26%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V E L + + + G VD L ++ +L +++ Sbjct: 653 VEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFTRRSQELAEQIYE 712 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF GL + T+T VL + P A V R Sbjct: 713 LA-GQTFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAARHPIAELVLEYRS 771 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ L E + DGR+ H Q Sbjct: 772 LVKLQGTY-VDGLAEHIGPDGRI-------------------------------HTTFQQ 799 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++ P+ I +R +A G +LV AD + IE RVLA +G+ Sbjct: 800 TVAATGRLSSTQPNLQNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDP 859 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF G+D++ T + F V QVT +QR + K + L Y + Sbjct: 860 GLVEAFAQGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDFGLARALRI-- 917 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + DA F E +P Sbjct: 918 -----------------DRADARRFMERYFERYP-------------------------- 934 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN- 575 + + + + + G+ RR +P R V+ N Sbjct: 935 --GVKRYMEETVRRARQQGEVTTLLGRR---------------RPVPEIRHRVFHIRQNA 977 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVH 629 R +NT +Q + DI+ M+ +A IVL VH Sbjct: 978 ERVAINTP------------------IQGTAADIMKLAMIRVHRALAEEGLRARIVLQVH 1019 Query: 630 DEIVCE 635 DE++ E Sbjct: 1020 DELLVE 1025 >gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259] gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259] Length = 907 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 92/504 (18%), Positives = 152/504 (30%), Gaps = 80/504 (15%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVG 113 +K LE IV N + R VL C I + +L P L ++ Sbjct: 385 IKPLLEERAAKIVGQNLKYARHVLANC---GIALGGAADDTLLQSYVLEAHQPHELASLA 441 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L C T + + A GEY VT + Sbjct: 442 NRHL----------GLATLACDELTGKGAAR--IGFDQVAVERAGEYAAEQADVTLRVRG 489 Query: 174 RLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +L + ++L Y+ + I G +D AL + + + +L+Q Sbjct: 490 QLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLELEQRA 549 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278 G + +++ LF + GL + T +T + L P A Sbjct: 550 FQEA-GQPFNLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDHPIA----- 603 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R L + G ++ P P R H Sbjct: 604 --------------------------RAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTS 637 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q + +P+ I +R IA G LV AD + IE R++A ++ Sbjct: 638 YSQATAVTGRLASVEPNLQNIPARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLS 697 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + L AF D++ T A F V V+ +QR I KV+ L Y A +AS Sbjct: 698 DDAGLLHAFANDLDIHTATAAEVFGVPLDAVSAEQRRIAKVINFGLIYGMSAF---GLAS 754 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 L + + + N+ +E+ + G + Sbjct: 755 QLNLERSAAQAWID--RYFTRYPGVANYMLRTRESARAQGYVETVFGRRL-----YLPEI 807 Query: 514 HSRVSELWNELHQAFEQTIENGKA 537 ++R + +A G A Sbjct: 808 NARNPQRRQGAERAAINAPMQGTA 831 >gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49] Length = 880 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 119/667 (17%), Positives = 222/667 (33%), Gaps = 163/667 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85 ++ A+G D + + D + P+ + L K AL+ D+ VL + + Sbjct: 337 EIVGLAWG-DSGQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144 +++P LA+ + +L Q + E+ + K Sbjct: 388 IELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYC 198 R P + ++ + + + ++L L EQ L ++ + G Sbjct: 437 RALPEQEQLFKHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIK 496 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256 V+ + + L QE+ L G + ++L T LF + GL LE T+ Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555 Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 H Q +T + DP+ I +R Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643 Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A+ G++ ++T E + +N+ Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM---- 754 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 E + + R + + +TI +RR + Sbjct: 755 -----------------ETIVREAR-------------DKGYVETI-------YHRRRSL 777 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 P + + R+ R+ R+ +N+ +Q + Sbjct: 778 PDI--------------NSRNFNIRNF-AERTAINSP------------------IQGSA 804 Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659 DIL M+N +A ++L VHDEIV E P+ + L M + A Sbjct: 805 ADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA- 863 Query: 660 GLPLKAE 666 +PL A+ Sbjct: 864 -VPLVAD 869 >gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 891 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V +I + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDIKQT 475 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIQKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] Length = 882 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 215/648 (33%), Gaps = 144/648 (22%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 D V+ D + + ++ +PQ +K L N ++ ++ + +LK Sbjct: 334 DKRVLYVFLSLDGNEIYYV---NEDELPQ-IKTLLSNPEIKKHGYDLKEDYILLKPY--- 386 Query: 87 DIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 +I ++ + +A ++ + A+K ++K++ ++L+ + K + + + Sbjct: 387 EIELNSMDFDITIAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLLGKGAKAKKFDEI- 445 Query: 144 DRNKPNHREAWRLFGEYCKGDVT-VTREIFKRLEPLSSK------EQELWYLDQTINDRG 196 + + V V ++ ++L+ E L + ++ G Sbjct: 446 ------EFDELSAYIGDILNTVNGVYLKMEEKLKETEMDGLFYHVEMPLVEVLGSMEYIG 499 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L + +L+ E+ L G + ++L LF + GL + T+ Sbjct: 500 MKVDKDQLNELKEKFTTIINELENEIFELA-GEPFNINSPKQLGVVLFEKLGLPVIKKTK 558 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T + KL E ++ ++ + Sbjct: 559 TGYSTNAEVLE----------------------KLRDKHEIIDK------ITEYRQIVKL 590 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 P+ R H +Q IT +++P+ I +R +A Sbjct: 591 NSTYVEGLLKIINPKTGRIHSSFNQTITTTGRISSTEPNMQNIPVKTEMGRDIRKVFVAD 650 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 E KLV AD + +E RVLA M+G++ + AF+ GED++ T ++ F+V VT QR Sbjct: 651 ENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKDVTSKQRIE 710 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + + + T + + Sbjct: 711 AKAINFGIIYGKTDFGLSQ---DLNIPVATAKAYIDSYF--------------------- 746 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 K+ ++ E + +A E E G A RR Y+ Sbjct: 747 --------------------NKYPKIKEF---MDEAVESATETGYATTILNRRR----YI 779 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + K + ++ G+ R +N +Q + DI+ Sbjct: 780 PEIKASNFIVRNQGK----------RFAMNAP------------------IQGSAADIIK 811 Query: 612 EGMMNATKAG------YDIVLTVHDEIVCE-TPDTDEFNASMLYHLMT 652 M+N ++L VHDE++ E + E ++ M Sbjct: 812 VAMVNVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVREEME 859 >gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] Length = 878 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 92/623 (14%), Positives = 195/623 (31%), Gaps = 135/623 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 LE+ + R ++ + + + L++A PS + + V K Sbjct: 363 LEDESKKKSVFDGK--RAIVSLKWQ-GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTK 419 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + E + + KG + ++ H + + ++ + Sbjct: 420 QYVGVQSDEAV--YGKGAKQKVPDEQVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFT 477 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VDV + + + + +++QE+ L G + ++L Sbjct: 478 DLELPLSTILAEMEFAGVKVDVERLKEMGEELAEQLKEVEQEIYRLA-GQEFNINSPKQL 536 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL ++ + R + + L++ Sbjct: 537 GVILFEKLQLPVLKKTKTGYSTSAEVLEKLAPQHEIVEKILHYRQL-GKLQSTYIEGLLK 595 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ D ++ H +Q +T +++P+ Sbjct: 596 VVHRD------------------------------TNKVHTIFNQALTQTGRLSSTEPNL 625 Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I SE + AD + IE RVLA +A ++ + AF G D++ Sbjct: 626 QNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHT 685 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+V+ +VT + R K + + Y + + A +K Sbjct: 686 KTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLNITRKEAAEFIKRYF 742 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + V + ++ Q +Q Sbjct: 743 -----------------------------------------EIFPGVKQYMKDIVQEAKQ 761 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + + +RR +P + + + RS R+ +NT Sbjct: 762 --KGYVTTLLHRRRYLPDITSRNF---------NLRSFA------ERTAMNTP------- 797 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ + M++ ++L VHDE++ E P + Sbjct: 798 -----------IQGSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERL 846 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 847 QQIVPEVMENAVQ--LRVPLKVD 867 >gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911] gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911] Length = 877 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 91/635 (14%), Positives = 203/635 (31%), Gaps = 147/635 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS----ALK 110 + K+ E+ + +++ L+ I + L++A PS Sbjct: 356 ETFKKWAEDESKKKIVYDAKRTEVSLRHH---GIHLKGVEFDLLIASYIINPSESIEDFA 412 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH---REAWRLFGEYCKGDVTV 167 +V + + + ++ A + KG + H + A D Sbjct: 413 SVAKRHGYNGVQTDD-----AVYGKGAKRKIPAQEELAGHLARKAAALEALRDKLEDELK 467 Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 ++ L E L + + +G VD+ + + ++ + +++ + L Sbjct: 468 ENRQYELFYDL---EMPLSLILADMESQGVKVDLERLQAMGEQINQKLGDIEERIHELA- 523 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L LF + GL T+T VL + ++ R Sbjct: 524 GEAFNINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLEDKHEIIREILQYRQL-G 582 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L++ + + + H +Q +T Sbjct: 583 KLQSTYIEGLLKVTDK------------------------------KTGKVHTRFNQALT 612 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I +R + SE G + AD + IE RVLA +AG++ Sbjct: 613 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKGWVIFAADYSQIELRVLAHIAGDEKL 672 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF +D++ T F+V+ +VT + R K + + Y + + G+ Sbjct: 673 IEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAVNFGIVYGISDYGLSQ---SLGIT 729 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + ++ R ++ + A + ++ T R R+ ++ Sbjct: 730 RKEAGQFID------RYLESYPGVREYMDDIIQEAKQKGYVSTLLHR-----RRYLPEIT 778 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 R+ R R+ Sbjct: 779 S----------------------------------------------RNFNLRSF-AERT 791 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 +NT +Q + D++ + M++ ++L+VHDE+ Sbjct: 792 AMNTP------------------IQGSAADVIKKAMIDMADRLREEGLQSRLLLSVHDEL 833 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E P+ + E ++ +M + +PLK + Sbjct: 834 IFEAPEEEIEILKRIVPDVMENTVD--LDVPLKVD 866 >gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152] gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152] Length = 910 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 101/651 (15%), Positives = 205/651 (31%), Gaps = 136/651 (20%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A D D + A L + V H + + + A + Sbjct: 364 AIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAK---SAMHALRGRGWTLGG 420 Query: 93 WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 LA P + +L+ +++ + A+ + + + Sbjct: 421 LTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQLSLLDDEDAVDAETARAE 480 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 R + + E + L+ E L + T+ + G VD L + Sbjct: 481 MLRARAVLDLAAA-LDAELEQIESTALLTDMELPLLGVLATLEEAGIAVDCEQLEALQRQ 539 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 + + + + G + ++L+ LF E + T+T + + L Sbjct: 540 FADKVAQAAEAAYGVI-GKQINLGSPKQLQVVLFDELDMPKTKRTKTGYTTDADALESLF 598 Query: 271 PQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + F + A R A + ++ L++++ DGR+ T Sbjct: 599 EKTQHPFLEHLLAHRDATRLKVTVDGLLKSVADDGRIHTT-------------------- 638 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADL 381 +Q I +++P+ I +R + G +L+ AD Sbjct: 639 -----------FNQTIAATGRLSSTEPNLQNIPIRTDTGRMIRDTFVVGPGYAELMTADY 687 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE R++A ++G++ ++AF +GEDL+ +++F++ A+V+ + R K M L Y Sbjct: 688 SQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAMSYGLAY 747 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 + +++ ++ Sbjct: 748 GLSSY---GLSAQLKISTAEA--------------------------------------- 765 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 K+ SR + + L++ EQ + G RR Sbjct: 766 -----KEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLFGRRRY--------------- 805 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-- 619 LP L+++ RQ RE L I Q + DI+ M++ + Sbjct: 806 LP---------------DLDSSNRQ-RREAAERMALNAPI-QGTAADIIKVAMIDVHRGI 848 Query: 620 ----AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 ++L +HDE+V E + + L M++ A +PL Sbjct: 849 REAGLRSRMLLQIHDELVFEVAEGERDALEQLAREKMSAAI--ALSVPLDV 897 >gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] Length = 888 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 88/526 (16%), Positives = 171/526 (32%), Gaps = 128/526 (24%) Query: 156 LFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 +F D+ + + L L + E+ L + + G VD LN+ Sbjct: 465 VFAISALYDIFIEKAKENNLISLYENVEKPLVKVLADMEKTGVLVDRNKIIELNEEYSKL 524 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TP 271 +Q++ L G V + ++L LF + GL + T+T + +KL Sbjct: 525 AYLYEQKVYELA-GEVFNLNSPKQLGVILFEKIGLPVVKKTKTGYSTDVEVLEKLSKKHE 583 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + R ++ L+ ++E + DGR+R + + Sbjct: 584 IVDYILKYR-SLNKLISTYLDGILEYIMDDGRVRTSFK---------------------- 620 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 Q+IT + DP+ I +R +A + K + AD + IE Sbjct: 621 ---------QMITATGRLSSVDPNLQNIPIRSEEGKNIRKVFVADKNKVFIDADYSQIEL 671 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA ++ + + +F+ D++ T + F V +VT +QR K + + Y Sbjct: 672 RVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKAVNFGIVYGISDY 731 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 ++ + N + + + + E A +D F+ Sbjct: 732 ---GLSKDLNITRNEARQYIDG------YLNTYPSIKSYMEEIVNKAKKDGFV------- 775 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 I ++R +P + + + Sbjct: 776 ------------------------------TTILDRKRYIPEI--------------NSK 791 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKA 620 + R G R LNT +Q + DI+ M + K Sbjct: 792 NFNIRSFGE-RIALNTP------------------IQGSAADIIKLAMIKVYERLKIEKV 832 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L +HDE++ E ++++ + N + LPLK + Sbjct: 833 NAKLILQIHDELIVECEESEKETVKKILKNSMEN-VYKLDLPLKVD 877 >gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] Length = 878 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 92/623 (14%), Positives = 195/623 (31%), Gaps = 135/623 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 LE+ + R ++ + + + L++A PS + + V K Sbjct: 363 LEDESKKKSVFDGK--RAIVSLKWQ-GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTK 419 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + E + + KG + ++ H + + ++ + Sbjct: 420 QYAGVQSDEAV--YGKGAKQKVPDEQVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFT 477 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VDV + + + + +++QE+ L G + ++L Sbjct: 478 DLELPLSTILAEMEFAGVKVDVERLKEMGEELAEQLKEVEQEIYRLA-GQEFNINSPKQL 536 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL ++ + R + + L++ Sbjct: 537 GVILFEKLQLPVLKKTKTGYSTSAEVLEKLAPQHEIVEKILHYRQL-GKLQSTYIEGLLK 595 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ D ++ H +Q +T +++P+ Sbjct: 596 VVHRD------------------------------TNKVHTIFNQALTQTGRLSSTEPNL 625 Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I SE + AD + IE RVLA +A ++ + AF G D++ Sbjct: 626 QNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHT 685 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+V+ +VT + R K + + Y + + A +K Sbjct: 686 KTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLNITRKEAAEFIKRYF 742 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + V + ++ Q +Q Sbjct: 743 -----------------------------------------EIFPGVKQYMKDIVQEAKQ 761 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + + +RR +P + + + RS R+ +NT Sbjct: 762 --KGYVTTLLHRRRYLPDITSRNF---------NLRSFA------ERTAMNTP------- 797 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ + M++ ++L VHDE++ E P + Sbjct: 798 -----------IQGSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERL 846 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 847 QQIVPEVMENAVQ--LRVPLKVD 867 >gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 922 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 119/704 (16%), Positives = 197/704 (27%), Gaps = 204/704 (28%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQV---- 56 +D ET S L ++ + HD +P Sbjct: 345 LDTETTSLDPLA----------ARIVGISLAVAPGEAAYLPLAHDYPGVPAQLPCDEVLA 394 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 LK LE+ + + +++ VL AL V Sbjct: 395 RLKSWLESPGHAKIGQHLKYDQHVLANH----------------------GIALAGVRHD 432 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR------ 169 L S +E GK+ + G L R+ + + + Sbjct: 433 TLLQSYVLESGKDGVR----GHDLGQLATRHLGLATIPYEALCGKGANQIGFEQVAIGQA 488 Query: 170 --------EIFKRLEPLSS-------------KEQELWYLDQ--TINDRGYCVDVALAHT 206 ++ +RL + E E+ D + +G +D L Sbjct: 489 AEYAAEDADLCQRLHAVLYPQIVADAGLARVYAEIEIPVRDILFRMERQGVLIDGELLTR 548 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRV 262 + + L+ + G + ++L LF + GL + T +T + V Sbjct: 549 QSHEIGKRLLDLEARAHA-AAGQPFNVNSPKQLAEILFDKLGLPVKKKTPSGTPSTDEEV 607 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 LS P + +R A + Sbjct: 608 LSELALDYPLPKILLESRQLA-------------------------------KLKGTYTD 636 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 P R H Q + +SDP+ I +R+ IA G LV Sbjct: 637 KLPKMVNAGTGRVHTSYAQAVAVTGRLASSDPNLQNIPVRTAEGRRIRAAFIAPPGSSLV 696 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++ + L+AF GED++ T A F V P V DQR + KV+ Sbjct: 697 SADYSQIELRIMAHLSEDARLLEAFAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINF 756 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 L Y A +A L ++ + R+M Sbjct: 757 GLIYGMSAF---GLARELDLERGAAQAYIE-----RYFARYPGVARYMATTRE------- 801 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +T + + R+ Sbjct: 802 ------------------------------AARTQGYVETVFGRR--------------- 816 Query: 558 LILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-- 614 L LP RS R G R+ +N Q + D++ M Sbjct: 817 --LWLPEIRSSQAGRRQGAERAAINAPM------------------QGSAADLIKSAMIA 856 Query: 615 ----MNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653 ++A + +++ VHDE+V E PD + L LMT Sbjct: 857 VQGWLDAERLQTRLLMQVHDELVLEVPDDELARVRGELPRLMTD 900 >gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1] gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1] Length = 910 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 96/562 (17%), Positives = 178/562 (31%), Gaps = 78/562 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV 112 Q L L + + + HN ++ VLK+ + + + ++A P + K Sbjct: 384 QQLAPLLGDPQLLKLGHNLKYDLQVLKSH---GLELAAPLADSMIASYLIDPGRRSHKLD 440 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + +L +++ E+ R + Y DV +R ++ Sbjct: 441 DLSSELLERQLTSFAEV----------SAGDRRPEAFAYVEPAAACRYSCQDVVASRLLW 490 Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + P L E L + + G VD A+ L + E +L+ ++ Sbjct: 491 ELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVDPAVLDELEREFGRELARLESKI 550 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVF 277 L G + +L L+ L T+ +T R L V Sbjct: 551 AELA-GESFNINSPRQLGEVLYERLKLPHGRKTKGKTGYSTDYRELERLAAYHDLPAAVI 609 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 ++R S+ P R H Sbjct: 610 SHRNL-------------------------------SKLKSTYVDKLATLIDPADGRVHT 638 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +Q +T +S+P+ I +R+ +A+ G + AD + I+ RVLA Sbjct: 639 TFNQTVTATGRLSSSNPNLQNIPIRTPEGRRLRAAFVAAAGHLFLAADYSQIDLRVLAHY 698 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G+ +AF +D++ T A F V V+ D R + K + + Y A + Sbjct: 699 SGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGMSAFGLAEQL 758 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + TF +E + R+MQE E A D ++GT R ++ + Sbjct: 759 RCSRKEAQTF--------IDRYFELYQGVLRFMQE-IVEQARRDGWVGTLLNR-RRPLPE 808 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYR 571 +S + T G A K + ++ +L L++ Sbjct: 809 INSGNKMRREFAERTAINTPIQGTAADIIKLAAIACDRALREAGCRSEALLQIHDELIFE 868 Query: 572 DVGNNRSYLNTTTRQLTREYTY 593 + + + RQ E Sbjct: 869 VPQDELAQVGPLIRQAMEEVME 890 >gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200] gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 K+ L + ++ ++ R ++ +N I I L++A P+ Sbjct: 370 DAFKDWLADGEMRKHTFDAK--RAIVALKWN-GIDIQGVDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + ++ E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 K+ L + ++ ++ R ++ +N I I L++A P+ Sbjct: 370 DAFKDWLADGEMRKHTFDAK--RAIVALKWN-GIDIQGVDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + ++ E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87] gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87] Length = 887 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 100/654 (15%), Positives = 202/654 (30%), Gaps = 138/654 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ F F DD + D Q L + LE+ + +++ + V N+DI Sbjct: 344 ILKFGFYADDS--HVVINAEDIKQYQDLVQWLEDKNTIKTVYDAK-KTYVAAHRLNIDI- 399 Query: 90 IHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 ++L+ P ++ V + L Q K+ ++ + KG+ H+ + Sbjct: 400 -QNVQFDVMLSSYIIDPSRSIDDVKSVVSLYGQ--NYVKDNVSVYGKGKKHQVPEEEVLN 456 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 H + K ++ E + ++E L E L + + + G DV + Sbjct: 457 KHVASITEAIANSKPEMEAQLEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLKQME 516 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265 + + L + + G + ++L LF L + T+T VL Sbjct: 517 NEIQEKLDVLIKNIHE-AAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQ 575 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P + R S+ Sbjct: 576 LQGEHPIIEHILEYRQL-------------------------------SKLQSTYVEGLQ 604 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVA 379 + + R H +Q + + DP+ I +R + ++ A Sbjct: 605 K-VISKDQRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPTDKDSVILSA 663 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA + ++ +AF G D++ T + FNV +V R K + + Sbjct: 664 DYSQIELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSLMRRQAKAVNFGI 723 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + + G+ + ++ + + + + A + ++ Sbjct: 724 VYGISDYGLSQ---SLGITRKKAKAFID------DYLASFPGVKQYMSDIVKDAKAEGYV 774 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T +RR +P + + Sbjct: 775 ETLL-------------------------------------HRRRYIPDITSRNF----- 792 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN--- 616 + RS R+ +NT +Q + DI+ M+ Sbjct: 793 ----NLRSFA------ERTAMNTP------------------IQGSAADIIKLAMVKFYE 824 Query: 617 -ATKAGYD--IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 Y ++L VHDE++ E P ++ E + + +M +PLK + Sbjct: 825 KVKDTNYHATLLLQVHDELIFELPKSEVEDFSKFVEEIMEQALD--LDVPLKVD 876 >gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W] gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQT 475 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19] gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19] Length = 959 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 100/635 (15%), Positives = 194/635 (30%), Gaps = 136/635 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LEN ++ V N ++ +VLK I + + T++++ Sbjct: 427 LKPVLENRNILKVGQNIKYDLSVLKRY---GIDVAPYDDTMLMSYVV-----------EG 472 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE---YCKGDVTVTREIFK 173 L M+E +L + + K + E Y D VT ++ Sbjct: 473 GLHGHGMDELSQL-HLGHTPIPFKQVAGSGKTLKSFKFVALKEATQYAAEDADVTLRLWH 531 Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P + E+ + + G VD + L+Q ++QE Sbjct: 532 VLKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLRNLSQDFGTRMNAIEQEAH 591 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRMR 282 + G + ++L F E L T + + + + Sbjct: 592 AH-LGRPFNLNSPQQLGVVFFDEMKLPGGKRTASGQWATDVKVLEDIAE----------- 639 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ TL + + L + ++ P+ R H Sbjct: 640 -GKNGTGAGQTLAKLL---------LDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHLA 689 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 T +++P+ I +R+ IA G KL+ AD + IE R+LA + + Sbjct: 690 STTTGRLASNEPNLQNIPIRTGEGRKIRTAFIAKPGCKLISADYSQIELRLLAHIGDIEQ 749 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 KAF G+D++ T + F V A +T + R K + + Y +A+ G+ Sbjct: 750 LKKAFSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINFGIIYGISGF---GLANQLGI 806 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + + E P +K Sbjct: 807 DQGE----------------ASRYIKTYFERFP--------------GIKDYMDATKQ-- 834 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +D + ++ GR + ++ Sbjct: 835 ---------------------------------FLRDNGFVQTLM--GRKIHIPEINGKG 859 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCE 635 + + G + I +A+ R AG+ ++L VHDE++ E Sbjct: 860 GAIKAFAERAAINAPIQGTAADIIRRAMMR-----MQPRLDAAGFTTRMLLQVHDELIFE 914 Query: 636 TPDTDEFNAS-MLYHLM--TSNPSWAKGLPLKAEG 667 P+ + ++ +M + P+ +PL E Sbjct: 915 APEAEVAAVIPLIQEVMQNAALPAVQISVPLVVEA 949 >gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17] gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17] Length = 921 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 92/534 (17%), Positives = 162/534 (30%), Gaps = 71/534 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + +K E+ V + N F+ VL + I H + GL Sbjct: 395 ERIKALCEDPSVLKIGQNLKFDMIVLGE-RGISIAPHDDTIVMSFDLDAGL-HGHGMDEL 452 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A S KE++ K H + Y D VT ++KR Sbjct: 453 AATHLSHTCLAFKEVVGTGKKQ----------LGFHEVDLKTATRYAAEDADVTLRLWKR 502 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + EQ L + + RG VD L+ + L+ E+ + Sbjct: 503 FKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERLSQLSTEFAGQIAGLEGEIHT 562 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRMRA 283 L G + ++L LF GL ++ ++ ++L + Sbjct: 563 LA-GTPFTIGSPKQLGEILFDRLGLKGGRKGKSGVYSTDVTELERLARDGGEEI------ 615 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 +R L++ S+ Q P+ R H Sbjct: 616 --------------------VRKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSLTG 655 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 +++P+ I +R IA +G L+ AD + IE R+ A MA Sbjct: 656 AQTGRLSSTEPNLQNIPIRTEVGRQLREAFIAEDGHVLIAADYSQIELRLAAHMADVPAL 715 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+D++ T F +V +D R K + A+ Y +A ++ Sbjct: 716 RDAFANGDDIHSLTAKELFG----EVNRDTRGRAKTINFAILYGIS---RWGLAGRLDVS 768 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + ++ E + + + E F T R K + + SR Sbjct: 769 ADEAQAMID--RYFERFPGINRYIAETLSSVREKG----FTETLFGR-KTHFPRIASRNQ 821 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPL--VYMKKDKNNLILMLPSGRSLVY 570 +A G + KR V + ++ ++L LV+ Sbjct: 822 GERQGAERAAINAPIQGTSADIIKRAMVRMEPALAAAGLGHVRMLLQVHDELVF 875 >gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 114/608 (18%), Positives = 190/608 (31%), Gaps = 154/608 (25%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 336 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 392 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 393 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 445 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 446 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 504 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 505 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 533 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T DP+ I + Sbjct: 534 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLCCCDPNLQNIPVRTPLGQR 593 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 594 IRRGFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 653 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + G++ + + + +E+A+ F Sbjct: 654 VDPLMRRAAKTIN--------------FGVLYGMSAHRLSQELAIP-----YEEAQAFIE 694 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 Q +V E+T+E G+ R+ Sbjct: 695 RYF-------------------------QSFPKVRAW-------IEKTLEEGR----RRG 718 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 L ++ +L + S R R N VQ Sbjct: 719 YVETLFGRRRYVPDLEARVKSVREAA------ERMAFNMP------------------VQ 754 Query: 604 AVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + D++ M + G ++L VHDE+V E P + L +M A Sbjct: 755 GTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA 814 Query: 659 KGLPLKAE 666 +PL+ E Sbjct: 815 --VPLEVE 820 >gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] Length = 942 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 88/474 (18%), Positives = 151/474 (31%), Gaps = 64/474 (13%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGL 105 V+ L N AHN+ F+ VL I + T++ A G Sbjct: 402 VPCGEVVTA-LAPFFANPQQPKFAHNAKFDMEVLA---GAGIKVSGLAFDTMIAAAMLGK 457 Query: 106 PSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG----EY 160 LK + LKL ++LI R K + + + A L+ E Sbjct: 458 RQGLKDLAFYELKLPEPP-TTIEDLIGRGNKQISFAEVPVEQAAPYAAADALYTLRLTER 516 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + + + E L + + G +D L + L + Sbjct: 517 LQRQLEAEPALHDLYYRV---ELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVE 573 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL--------HLEDLTETTCQRVLSSNKKLTPQ 272 + G + ++L LF G+ L+ + VL +L P Sbjct: 574 RIYQQAGG-PFNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPI 632 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 A + R ++ P PR Sbjct: 633 AADILTYRQL-------------------------------TKLKSTYIDALPDLVNPRT 661 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q+ +++P+ I +R +A G + V AD + IE R Sbjct: 662 GRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYSQIELR 721 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA M+G++ + AF+ G D++ T +R F V P V K+QR + K + + Y A Sbjct: 722 VLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAF- 780 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 +A G+ + L+ A ++ + E +H G Sbjct: 781 --GLAQRLGIERDLARQLIDNLFA--QFPGIRRYIDQTLEFGRQHGYVQTLFGR 830 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Query: 598 TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHL 650 +Q + D++ M+N +A ++L VHDE++ E P+ + E A +L + Sbjct: 852 INAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDEVEPAARLLRDV 911 Query: 651 MT 652 M+ Sbjct: 912 MS 913 >gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550] gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293] gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDVQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I I L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDIQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3] gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3] Length = 919 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 111/687 (16%), Positives = 202/687 (29%), Gaps = 154/687 (22%) Query: 12 SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-----LKEAL 61 + D + ++ + + H +P+ LK L Sbjct: 344 TSFDTETTSLDPMV--AQIVGISLSTEPGSAAYIPVAHRGPDAPEQLPRDEVLAKLKPWL 401 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSS 120 E+ + V + ++ VL N +I ++ TL+ + AL+ Sbjct: 402 ESAERRKVGQHLKYDAQVLA---NYEIALNGIEHDTLLESYVLESHRTHDMDSLALRHLG 458 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 K + +E+ + + Y D +T ++ + P + Sbjct: 459 VKTIKYEEVAGKGAQQ----------IGFDEVPLETAAAYAAEDADITLQLHLAMYPQVA 508 Query: 181 KEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 +E L + I G +D A + + V +L++E L G Sbjct: 509 REPGLKRVYAEIEMPVSLVLRRMERTGVLIDSARLDKQSHEIAVRLIELEREAYELAGG- 567 Query: 230 VSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +++ F + L + +T + VL + P + +R Sbjct: 568 EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHR----- 622 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 G S+ P R R H Q + Sbjct: 623 --------------------------GLSKLKSTYTDKLPRMINARTGRVHTNYAQAVAV 656 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++DP+ I +R IAS G ++V AD + IE R++A ++ ++ L+ Sbjct: 657 TGRLASNDPNLQNIPVRTAEGRRIREAFIASPGCRIVSADYSQIELRIMAHISEDESLLR 716 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF GED++ T A F V P +V+ DQR I KV+ L Y A +AS G+ + Sbjct: 717 AFSQGEDIHRATAAEVFGVTPLEVSNDQRRIAKVINFGLIYGMSAF---GLASNLGITRD 773 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + A + N+ + + + G + + Sbjct: 774 AAKLYIDRYFAR--YPGVANYMETTRAVAKDKGYVETVFGRRL-----WLPEINGGNGPR 826 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 +A G A K + + L Sbjct: 827 RQAAERAAINAPMQGTAADLIKLSMIAV------DGWLE--------------------- 859 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 RD L M+ + VHDE+V E P+ + Sbjct: 860 --------------------------RDKLRSRMI----------MQVHDELVLEVPEDE 883 Query: 641 -EFNASMLYHLMTSNPSWAKGLPLKAE 666 L +M+ +PL AE Sbjct: 884 LALVREKLPEMMSGVAK--LKVPLVAE 908 >gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1] gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1] Length = 864 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 102/633 (16%), Positives = 191/633 (30%), Gaps = 160/633 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+T + + H+ F R VL+ +D R +LA L++ Sbjct: 366 LKQILEDTAIYKITHDGKFTRNVLRQ-LGID---FRCQFDTMLAAYL-----LESSKPRY 416 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRL 175 + ME + ++ + P+ E LF D + + +L Sbjct: 417 DIPILVMEYLGKTMS--------------DIPSFDEKTSYLFELKKIMDEKIKDCLMDKL 462 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 E + + G VD A L++ + L +E+ L G + Sbjct: 463 --FYEVEMPFSVVLADMEHAGIKVDFAKLQELSERFGKKLAALTEEIYDLA-GTEFNINS 519 Query: 236 LEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + L + T+T VL + P ++ R Sbjct: 520 PKQLGEILFEKLSLPVIKRTKTGYSTDAEVLEKLRPSHPIIEKILEYRFLM--------- 570 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + R + +Q +T ++ Sbjct: 571 ----------------------KMKSTYADGLSALVDKKTGRIYTSFNQTVTSTGRISST 608 Query: 353 DPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +P+ I +R + G L+ D + IE RVLA M+ + ++AF +GE Sbjct: 609 EPNLQNIPVKTEEGKHIRGVFTSDGPGHVLLSGDYSQIELRVLAHMSQDPGLIEAFVSGE 668 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T + F V P +VT R K + + Y +A G++ Sbjct: 669 DIHRRTASEVFGVPPEEVTPLLRDKAKAVNFGIIYGISDY---GLAQNLGISNQEA---- 721 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 K+ +R + + + + Sbjct: 722 ----------------------------------------KEYIDAYFARYPGVRDYIRE 741 Query: 527 AFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 G + +RR +P + + RS R+ +NT Sbjct: 742 TIRSAKALGYVTTLLNRRRYIPDINSRNYH---------LRSFA------ERTAVNTP-- 784 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ I+L VHDE++ + P+ Sbjct: 785 ----------------IQGSAADIIKIAMVKVHDNLRQNNLKAKILLQVHDELILDVPEE 828 Query: 640 DEFNASMLYHL-MTSNPSWAKGLPLKAE---GY 668 + + M + +PL + GY Sbjct: 829 ELTAVKEILKQHMENAIP--LRVPLVVDFKQGY 859 >gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241] gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I I L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDIQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330] Length = 880 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 118/667 (17%), Positives = 220/667 (32%), Gaps = 163/667 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFN 85 ++ A+G D + + D + P+ + L + AL+ D+ VL + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLIKTALKTYDLKRT--------KVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144 +++P LA+ + +L Q + E+ + K Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436 Query: 145 RNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYC 198 R P + + + + +L+ L EQ L ++ + G Sbjct: 437 RALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIK 496 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256 V+ + + L QE+ L G + ++L T LF + GL LE T+ Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555 Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 H Q +T + DP+ I +R Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643 Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A+ G++ ++T E + +N+ Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM---- 754 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 E + + R + + +TI +RR + Sbjct: 755 -----------------ETIVREAR-------------DKGYVETI-------YHRRRSL 777 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 P + + R+ R+ R+ +N+ +Q + Sbjct: 778 PDI--------------NSRNFNIRNF-AERTAINSP------------------IQGSA 804 Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659 DIL M+N +A ++L VHDEIV E P+ + L M + A Sbjct: 805 ADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA- 863 Query: 660 GLPLKAE 666 +PL A+ Sbjct: 864 -VPLVAD 869 >gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 K+ L + ++ ++ R ++ +N I I L++A P+ Sbjct: 370 DAFKDWLADGEMRKHTFDAK--RAIVALKWN-GIDIQGVDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + ++ E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKRKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201] gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201] gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342] gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342] Length = 891 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I I L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDIQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842] gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842] Length = 877 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 K+ L + ++ ++ R ++ +N I I L++A P+ Sbjct: 356 DAFKDWLADGEMRKHTFDAK--RAIVALKWN-GIDIQGVDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + ++ E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 866 >gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] Length = 880 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 115/678 (16%), Positives = 211/678 (31%), Gaps = 173/678 (25%) Query: 28 VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYF 75 ++ + + D V D + P+ L + AL+ D+ Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQDFLTKIALKTYDLKRT------ 379 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134 VL + + +++P+ LA+ + +L Q + E+ + Sbjct: 380 --KVLLSHYGIELPVAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYL 188 K R P + + + + +L+ L EQ L ++ Sbjct: 436 K---------RALPEKEQLFEHLARKVQILLETEEPMQEQLRAHNQLDLLLEMEQPLAFV 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V+ + + L QE+ L G + ++L T LF + G Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545 Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L LE T+T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK 604 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 H Q +T + DP+ I Sbjct: 605 -------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRL 633 Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVF 693 Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + VT + R K + + Y +A+ G++ ++T Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF------ 744 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG- 535 R + N + + + G Sbjct: 745 --------------------------------------ERFPGIKNYMETIVREARDKGY 766 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 I +RR +P + + R+ R+ R+ +N+ Sbjct: 767 VETIYHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-Y 648 +Q + DIL M+N +A ++L VHDEIV E P + L Sbjct: 800 ------IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVK 853 Query: 649 HLMTSNPSWAKGLPLKAE 666 M + A +PL A+ Sbjct: 854 ETMEAAIKLA--VPLVAD 869 >gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134] gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134] Length = 877 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQT 461 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] Length = 971 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 100/634 (15%), Positives = 193/634 (30%), Gaps = 141/634 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEA 115 LK LEN V V N+ ++ V+ I + + T++++ G A Sbjct: 446 LKVLLENPSVLKVLQNAKYDLAVMAR---RGIRVAPYDDTMLISYVLEGGLHGHGMDELA 502 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K + G R+ +Y D VT +++ L Sbjct: 503 RLHLGHDPVPFKSVA-----GTGKSQKSFRHVALKP-----ATQYAAEDADVTLRLWRLL 552 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P ++E + L + + G +D L+ + +L+ + + Sbjct: 553 KPRLAREGLSTVYETLERPLPAVLAEMETAGVRIDPDRLKRLSSEFGLRMAELEAQAHEI 612 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++ LF E L T + T VL + + R Sbjct: 613 A-GRPFNIGSPRQIGEILFGELNLPGGKKTASGQWGTDASVLEDLAATHALPRVLLDWRQ 671 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ P R H Sbjct: 672 L-------------------------------SKLKGTYTDALTAAADPATDRVHTSYQL 700 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +SDP+ I +R IA+ G L+ AD + IE R+LA + Sbjct: 701 AAATTGRLASSDPNLQNIPIRTETGREIRQAFIAAPGHLLISADYSQIELRLLAHIGDIP 760 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF+ G D++ T + F V + + R K + + Y A +A+ G Sbjct: 761 ELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIVYGISAF---GLAAQLG 817 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +A + + + P ++ + + Sbjct: 818 IDQG----------------EAGAYIKTYFDRFP--------------GIRTYMDKTRAE 847 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 V + + + +R +P ++ +S R G Sbjct: 848 VRQ-------------AGFVSTVFGRRIHIPAIHS--------------KSGAERQFGE- 879 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 R+ +N + G + I +A+ R + ++L VHDE+V ET Sbjct: 880 RAAINAPIQ---------GAAADIIRRAMIR---MPTALAEAGLTTRMLLQVHDELVFET 927 Query: 637 PDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEG 667 P+ + A +++ +M + P+ A +PL + Sbjct: 928 PEAEADRAITVIKRVMETASDPAVALTVPLVVDA 961 >gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] Length = 901 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 118/657 (17%), Positives = 205/657 (31%), Gaps = 147/657 (22%) Query: 33 FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A + D + L E L + ++ V H+ L + + Sbjct: 355 VALAAPNGEGAYLDVTTLTEDDERALGEWLADENIHKVGHSLK---KALHGLRSRGWRLA 411 Query: 92 RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 + LA P + K L+ GKEL + +G+ L D + N Sbjct: 412 GLVMDTELAAYLVRPGQRSFKLDDLVLRYL------GKELRSEGVEGDGQLSLLDTDSDN 465 Query: 150 HREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 L ++ L+ E L + + G VD+ + Sbjct: 466 EIVRRELVRARAVLELSSALSAELAAIGATTLLADIELPLLSMITDLEAAGIAVDIDVLT 525 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265 L + ++ S+ G + ++L+ LF E G+ T+T + Sbjct: 526 ELEAHYANRVKQATEQAYSVI-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADA 584 Query: 266 NKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 + L + F + R A + L++A+ DGR+ T Sbjct: 585 LQTLYEKTEHPFLQYLLEHRDATKLRSTVEGLIKAVADDGRIHTT--------------- 629 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KL 376 L Q IT + DP+ I +R + EG +L Sbjct: 630 ----------------LHQTITATGRLSSVDPNLQNIPVRTDEGRRIREAFVVGEGYAEL 673 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++A ++ ++ ++AF +G D + T AR F+V P +VT +QRA K M Sbjct: 674 MTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVDPTEVTGEQRAKIKAMN 733 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y A + + Sbjct: 734 YGLAYGLSAYGLSQQLRIS----------------------------------------- 752 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDK 555 E + + R + + LH E+ + G I +RR +P + Sbjct: 753 ------TEEARALMDEYFLRFGGVRDYLHSVVERAAKEGYTETIFGRRRYLPDL------ 800 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 T+T + RE L I Q + DI+ M+ Sbjct: 801 --------------------------TSTNRQRREMAERMALNAPI-QGSAADIIKVAML 833 Query: 616 NATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 +A ++L VHDE++ E D + L M S ++ +PL+ Sbjct: 834 GVHRALAEAGLRSRVLLQVHDELMLEVADGEHAQVEELVRREMGS--AYELSVPLEV 888 >gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26] gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932] gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55] gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79] gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196] gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291] gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58] gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196] gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291] Length = 882 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 108/648 (16%), Positives = 210/648 (32%), Gaps = 150/648 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I D + D L N ++ +N + LK +I Sbjct: 337 IIYIFISVDGEKIYYVDSNEVSK----LDSIFSNNEIKKYGYNLKDDYISLKPY---NIN 389 Query: 90 IHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + +A ++ A+K S+K++ +EL+ + K + +E L + Sbjct: 390 LENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFED 449 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVD 200 + + E + L +S E L + + G VD Sbjct: 450 LAEYMGQIICTVKE----TIPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVD 503 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 ++ L+ L++E+ L+ G + ++L LF + L + T+T Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELS-GEPFNINSPKQLGVILFEKLELPIIKKTKTGYS 562 Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 VL + P ++ R + + L+ +N Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQ-IVKLNSTYVEGLLNIIN------------------ 603 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372 P +R H +Q IT +++P+ I +R IA + Sbjct: 604 ------------PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADD 651 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 KLV AD + +E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R Sbjct: 652 NCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA 711 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y +A + + +++ Sbjct: 712 KAVNFGIIYGKSDF---GLADDLNIPVPKAKEYIES------------------------ 744 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551 + K+ ++ E + E+ E+G A+ I +RR +P + Sbjct: 745 -----------------YFAKYHKIKEF---MDTTVEKASEDGYAVTILNRRRYIPEI-- 782 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 K N + R +N +Q + DI+ Sbjct: 783 -KSSNFMERN------------RGKRFAMNAP------------------IQGSAADIIK 811 Query: 612 EGMMNATKAGYD------IVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 M+N K + ++L VHDE++ E D + ++ M Sbjct: 812 IAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEME 859 >gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15] gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15] Length = 891 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + ++ E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 891 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] Length = 891 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + ++ E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896] Length = 872 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 115/644 (17%), Positives = 203/644 (31%), Gaps = 147/644 (22%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 V + +P+ LKE LE +V I +N E T LK + +P + LA+ PS Sbjct: 342 VEEENIPK-LKELLERENVFIYGNNLKREYTALKPY-GITLP--KISFDSQLAQYILNPS 397 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 ++ E + + L KG+ N+ E + K + Sbjct: 398 EVEQEPEKIGIKYGMPIVSPNLEDLLGKGKKRMSFSMANRVQMDE------YFAKILAII 451 Query: 168 TREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 + K L+ + + E L + + G V+ + L Q + Sbjct: 452 SHCKTKMLDMIQEEDTKFLFEKIELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQY 511 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQ 275 +QE+ L G + ++L LF + L + T+T +L P + Sbjct: 512 EQEIYDLA-GEEFNINSPKQLGVVLFEKLQLPVIKKTKTGYSTGAEILEKLYDKHPIISK 570 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + + R S+ P R Sbjct: 571 ILSYRQ-------------------------------VSKLQSTYVIGLLSLINPTSKRI 599 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H +Q +T + +P+ I +R +A EG LV AD + IE RVLA Sbjct: 600 HSTFNQTLTTTGRISSLEPNLQNIPVRTEMGRELRKVFVAKEGYVLVDADYSQIELRVLA 659 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 MA E+ ++ F D++ T + F+V +VTK+ R+ K + + Y Sbjct: 660 HMAQEKKMIEGFHGSMDIHTKTASEVFSVPVEEVTKELRSAAKAVNFGIVYGISDF---G 716 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +++ + + A +K Sbjct: 717 LSNNLNITKKQAKEYIDLYFARY------------------------------PGIKTYM 746 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 V EL + +RR +P + K N ++ + Sbjct: 747 DTIVKEVEELGY-------------STTLCGRRRYIPEI---KSSNFIVKNM-------- 782 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624 R +NT +Q + DI+ M K ++ Sbjct: 783 ----GKRLAMNTP------------------IQGSAADIIKIAMNRVFEWLKTEKIDAEL 820 Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 VL VHDE++ E + D ++ + LM +W+ +PLK + Sbjct: 821 VLQVHDELLLEVREDDAKYVRDKVIELMEG--AWSMDVPLKVDA 862 >gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1] gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1] Length = 905 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 116/692 (16%), Positives = 213/692 (30%), Gaps = 167/692 (24%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKE---ALENT 64 ET D G+ Y E ++ F+F F+D H + +P + E AL Sbjct: 334 ETIVAFDTETTGLD-Y-EKDKLVGFSFSFNDDEAFYVPFAHFYLGVPDQISEKDAALAMK 391 Query: 65 DV---TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + +V HN F+ + N D+ ++ + +++LA SAL + KL Sbjct: 392 KIFNSKVVGHNIKFDLHFVSRFLNDDM-LNIYSDSMILAWLINPESALGLDKLSDKLLDH 450 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 M K+ + + + +Y D +T ++F Sbjct: 451 TMLGFKDTVK-------------KGETFASVELEDASKYAAEDAYITLKLFNLFNEKLKL 497 Query: 182 EQELWYLDQT-------------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + +D++ + G VD V L + + G Sbjct: 498 QDATHLIDESQNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVKETLLNLTKTIYEQA-G 556 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF GL + T+T VLSS K + R + Sbjct: 557 TEFNINSTKQLGVILFEHLGLPVGKKTKTGYSTDENVLSSLKDKHEIISSLLEYR-EIYK 615 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + L++ D + R H Q T Sbjct: 616 LYSTYIEPLLKLSLED-----------------------------KEGRIHTSFVQTGTA 646 Query: 346 LPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + +P+ I + +R +A EGKKL+ D + IE R+LA + + + Sbjct: 647 TGRLSSKNPNLQNIPARTSQGLKIREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVD 706 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +D+++ T F + +RA+ K + L Y G +K++ T G+ Sbjct: 707 AFRANKDIHLQTAIALFG---EEEAPSKRAVAKTVNFGLLYGMGQ---KKLSETLGITTK 760 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +A+ E+ P VK +R E Sbjct: 761 ----------------EAKEIIEKYFESFPT--------------VKTYFRSIVDNSKE- 789 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + + ++ R+R Y Sbjct: 790 -----------MGYVETLLKRRR-----------------------------------YF 803 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 + T Y + ++ Q + D++ M K ++L +HDE++ Sbjct: 804 DYETASPMFRAAYDRESVNSVFQGSASDLIKLSMNKIATVIKEEKLNAKMLLQIHDELIF 863 Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 E D E + +M + + +PL+A Sbjct: 864 EVDADEAEMLGNRFKEIMENI--YELNIPLEA 893 >gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185] gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185] Length = 891 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQT 475 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1] gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1] Length = 891 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264] gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264] Length = 877 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 461 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 866 >gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42] gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42] Length = 891 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 891 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQT 475 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames] gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus anthracis str. A2012] gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W] gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820] gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684] gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248] gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066] gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055] gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America USA6153] gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B] gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94] gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames] gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W] gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820] gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684] gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248] Length = 877 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228] gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228] Length = 903 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 105/664 (15%), Positives = 202/664 (30%), Gaps = 147/664 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F + + D + L + LE+ + T + +++ + V Sbjct: 355 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 410 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++I ++LA P ++ V + L Q K+ I F KG+ H Sbjct: 411 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 466 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + H VT T E + ++E L E L + + + G Sbjct: 467 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 522 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 D+ + + + L + + G + ++L LF L + T+T Sbjct: 523 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 581 Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 VL + P + R A + Sbjct: 582 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 610 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 + + R H +Q + + DP+ I +R Sbjct: 611 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 669 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 S+ ++ AD + IE RVLA + ++ AF G D++ T + FNV QV R Sbjct: 670 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 729 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + + G+ + ++ + + + Sbjct: 730 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 780 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A ++ T +RR +P + Sbjct: 781 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 803 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + RS R+ +NT +Q + DI Sbjct: 804 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 830 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662 + M+ TK ++L VHDE++ E P ++ E + + +M +P Sbjct: 831 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 888 Query: 663 LKAE 666 LK + Sbjct: 889 LKVD 892 >gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488] gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum] gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488] Length = 877 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L] gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L] Length = 891 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160] gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1] gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408] Length = 880 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 118/677 (17%), Positives = 219/677 (32%), Gaps = 171/677 (25%) Query: 28 VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75 ++ + + D V D + P+ + L K AL+ D+ Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQEFLTKTALKTYDLKRT------ 379 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134 VL + + +++P LA+ + +L Q + E+ + Sbjct: 380 --KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188 K R P + + + + + ++L L EQ L ++ Sbjct: 436 K---------RALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFV 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V+ + + L QE+ L G + ++L T LF + G Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545 Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L LE T+T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK 604 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 H Q +T + DP+ I Sbjct: 605 -------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRL 633 Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVF 693 Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + VT + R K + + Y +A+ G++ ++T E + Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +N+ E + + R + + +TI Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 +RR +P + + R+ R+ R+ +N+ Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799 Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649 +Q + DIL M+N +A ++L VHDEIV E P+ + L Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854 Query: 650 LMTSNPSWAKGLPLKAE 666 M + A +PL A+ Sbjct: 855 TMEAAIELA--VPLVAD 869 >gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] Length = 877 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 108/657 (16%), Positives = 206/657 (31%), Gaps = 152/657 (23%) Query: 29 CVILFAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 ++ FA+G + + + D + P+ + +N R +L + Sbjct: 343 QIVAFAWG-NAEKIYVSKNIDLLTKMKFPENTYDFKKN-------------RVLLSH-LD 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P+ +LA+ + + +L + E I F KG D Sbjct: 388 IELPL--VKFDAMLAKYLISTTEDNKISTIARLFNSGHLATDEEI--FGKGTKIALPDDA 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H K + ++ LS E L + + G V Sbjct: 444 VLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLE 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262 + + + L +E+ L G + ++L LF + L + T+T V Sbjct: 504 EIGAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDV 562 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L L+P ++ R ++ Sbjct: 563 LEDLAALSPVVAKILEYRQ-------------------------------INKVQSTYVK 591 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 PQ + + H Q +T + DP+ I +R + S+ L+ Sbjct: 592 GLIPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436 +D + IE RVLA ++G++ + AF+ G D++ +T R F + VT + R K + Sbjct: 651 SSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVN 710 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y +A G+ + ++T + + + EN A + Sbjct: 711 FGVVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDK 761 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 F+ T ++ +RR +P + Sbjct: 762 GFVET-------------------------------------MSHRRRKIPDI------- 777 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + R+ R R+ +N+ +Q + DIL M+N Sbjct: 778 -------NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMIN 811 Query: 617 ATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 KA ++L VHDEI+ + P + +L M A +PLK + Sbjct: 812 LDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKVLVKQTMEEAIELA--VPLKVD 866 >gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36] gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains, putative [Streptococcus sanguinis SK36] Length = 880 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 118/668 (17%), Positives = 217/668 (32%), Gaps = 165/668 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V+ A+G D + + D + P+ + L + T A VL + + + Sbjct: 337 EVVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDIKRA-------KVLLSHYGI 388 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 ++P LA+ + ++ L + E Sbjct: 389 ELPA--AAFDARLAKYL-----------LSTVEDNELVTIARLYGQTILPTDDEVYGKGA 435 Query: 147 KPNHREAWRLFGEYCKG-DVTVT--------REIFKRLEPLSSKEQELWYLDQTINDRGY 197 K E +LF + V + +L+ L EQ L ++ + G Sbjct: 436 KRALPEQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGI 495 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLT 255 V+ + + L QE+ L G + ++L T LF + GL LE T Sbjct: 496 KVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKT 554 Query: 256 ETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 +T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 555 KTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK--------- 604 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 H Q +T + DP+ I +R Sbjct: 605 ----------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKA 642 Query: 368 VIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVT 425 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT Sbjct: 643 FVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVT 702 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K + + Y +A+ G++ ++T E + +N+ Sbjct: 703 PNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM--- 754 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E + + R + + +TI +RR Sbjct: 755 ------------------ETIVREAR-------------DKGYVETI-------YHRRRS 776 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 +P + + R+ R+ R+ +N+ +Q Sbjct: 777 LPDI--------------NSRNFNIRNF-AERTAINSP------------------IQGS 803 Query: 606 SRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA 658 + DIL M+N +A ++L VHDEIV E P+ + ++ M + A Sbjct: 804 AADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMETAIELA 863 Query: 659 KGLPLKAE 666 +PL A+ Sbjct: 864 --VPLVAD 869 >gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1] gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1] Length = 891 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26] gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26] Length = 891 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678] Length = 880 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 118/677 (17%), Positives = 219/677 (32%), Gaps = 171/677 (25%) Query: 28 VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75 ++ + + D V D + P+ + L K AL+ D+ Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQEFLTKTALKTYDLKRT------ 379 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134 VL + + +++P LA+ + +L Q + E+ + Sbjct: 380 --KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188 K R P + + + + + ++L L EQ L ++ Sbjct: 436 K---------RALPEQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFV 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V+ + + L QE+ L G + ++L T LF + G Sbjct: 487 LAKMEIAGIKVERETLQGMQTENEKTLESLTQEIYDLA-GQEFNINSPKQLGTVLFEDMG 545 Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L LE T+T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK 604 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 H Q +T + DP+ I Sbjct: 605 -------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRL 633 Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVF 693 Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + VT + R K + + Y +A+ G++ ++T E + Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +N+ E + + R + + +TI Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 +RR +P + + R+ R+ R+ +N+ Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799 Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649 +Q + DIL M+N +A ++L VHDEIV E P+ + L Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854 Query: 650 LMTSNPSWAKGLPLKAE 666 M + A +PL A+ Sbjct: 855 TMEAAIELA--VPLVAD 869 >gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] Length = 877 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI] gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI] Length = 877 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057] Length = 880 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 117/666 (17%), Positives = 216/666 (32%), Gaps = 161/666 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G D + + D + P+ + L + T A VL + + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRA-------KVLLSHYGI 388 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145 ++P LA+ + +L Q + E+ + K R Sbjct: 389 ELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTVLPTDDEVYGKGAK---------R 437 Query: 146 NKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 P + + + + +L+ L EQ L ++ + G V Sbjct: 438 ALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKV 497 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET 257 + + + L QE+ L G + ++L T LF + GL LE T+T Sbjct: 498 ERENLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTKT 556 Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 VL + P ++ R S+ + L EA+ +DG+ Sbjct: 557 GYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK----------- 604 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369 H Q +T + DP+ I +R + Sbjct: 605 --------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV 644 Query: 370 ASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKD 427 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + Sbjct: 645 PEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPN 704 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y +A+ G++ ++T E + +N+ Sbjct: 705 DRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM----- 754 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 E + + R + + +TI +RR +P Sbjct: 755 ----------------ETIVREAR-------------DKGYVETI-------YHRRRSLP 778 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + R+ R+ R+ +N+ +Q + Sbjct: 779 DI--------------NSRNFNIRNF-AERTAINSP------------------IQGSAA 805 Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660 DIL M+N +A ++L VHDEIV E P + L M + A Sbjct: 806 DILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAAIKLA-- 863 Query: 661 LPLKAE 666 +PL A+ Sbjct: 864 VPLVAD 869 >gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059] Length = 880 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 118/669 (17%), Positives = 216/669 (32%), Gaps = 167/669 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85 ++ A+G D + + D + P+ + L K AL+ D+ VL + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P LA+ + ++ L + E Sbjct: 388 IELPA--AAFDARLAKYL-----------LSTVEDNELVTIARLYGQTILPTDDEVYGKG 434 Query: 146 NKPNHREAWRLFGEYCKG-DVTVT--------REIFKRLEPLSSKEQELWYLDQTINDRG 196 K E +LF + V + +L+ L EQ L ++ + G Sbjct: 435 AKRALPEQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DL 254 V+ + + L QE+ L G + ++L T LF + GL LE Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKK 553 Query: 255 TETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK-------- 604 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366 H Q +T + DP+ I +R Sbjct: 605 -----------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRK 641 Query: 367 CVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQV 424 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + V Sbjct: 642 AFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDV 701 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + + Y +A+ G++ ++T + + + Sbjct: 702 TPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIET------YFERFPGIKN 752 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 +E A + ++ T I +RR Sbjct: 753 YKETIVREARDKGYVET-------------------------------------IYHRRR 775 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 +P + + R+ R+ R+ +N+ +Q Sbjct: 776 SLPDI--------------NSRNFNIRNF-AERTAINSP------------------IQG 802 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSW 657 + DIL M+N +A ++L VHDEIV E P+ + L M + Sbjct: 803 SAADILKVAMINLDRALTEKNFNSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIEL 862 Query: 658 AKGLPLKAE 666 A +PL A+ Sbjct: 863 A--VPLVAD 869 >gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2] gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2] Length = 935 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 80/511 (15%), Positives = 155/511 (30%), Gaps = 74/511 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ + + N ++ +L + + + A GL ++ + Sbjct: 413 LKPVLEDDAILKIGQNMKYDAKILAR-LGISVAPIDDTMLMSYAMHAGL-NSHGMDALSD 470 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + K L+ T R Y D +T +++ + Sbjct: 471 QYLGHQPIAIKPLLGSGKSAVT----------FDRVPIDQAVAYAAEDADITLRLWELFK 520 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 P + E+ L + + G VD ++ + L+ E+ + Sbjct: 521 PQLHRAHVTTVYETLERPLVPVLAQMEMAGIQVDRDTLSRMSNAFAQKMAGLEAEIHDMA 580 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + L + +T T VL +V + R Sbjct: 581 -GEKFNVGSPKQLGEILFDKMSLPGGEKGKTGAYATGADVLEDLATEHELPGRVLDWRQL 639 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ P R H Sbjct: 640 -------------------------------SKLKSTYTDALQDHINPETGRVHTSYSLT 668 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 ++DP+ I +R +A +G++LV D + IE R+LA +A Sbjct: 669 GAVTGRLASTDPNLQNIPVRSEEGRRIREAFVAPKGRRLVSLDYSQIELRILAHVADIPA 728 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF G+D++ T + FNV Q+T D R K + + Y +A + Sbjct: 729 LKQAFREGQDIHAMTASEMFNVPLDQMTPDIRRQAKAINFGVIYGISGF---GLARNLRI 785 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + + ++ A + F+ T R K + ++R Sbjct: 786 PRSAAQGFID------RYFERFPGIKGYMDDTVAFAKANGFVQTLFGR-KIHTPEINARG 838 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPL 548 +A G A +R V + Sbjct: 839 PGA-GFAKRAAINAPIQGTAADVIRRAMVRM 868 >gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020] Length = 877 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] Length = 893 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 122/689 (17%), Positives = 226/689 (32%), Gaps = 148/689 (21%) Query: 15 DLTKCGIC----KYAEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68 D+ K G+ + ED + A+ + + D + K+ E ++ Sbjct: 325 DIEKDGVFYFKSIFEEDNYIHSNAYKIAIKTSSSKTYIYNPDEKFVEKFKKYFEADNIKK 384 Query: 69 VAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 V+ + + + N+ +P + L + S+ + ++E + Sbjct: 385 VSFDIKEDIVLFDKLGINISLPYDDTMLMHYL--IDPSRSSYDLKTFSQAFLKYEVENEE 442 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SK 181 +L+ + ++++ L N + D + ++LE LS Sbjct: 443 DLLGKGKSKKSYKDLDSDNL----GKYLASIVNAIED--SLDILTQKLEELSMYDLYKDC 496 Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E +L + + G+ D + V +E L++ + L G + ++L Sbjct: 497 EIKLSKVLADMEITGFICDKNELEKIKDEVSLELGDLEKIIYELA-GSEFNINSPKQLSK 555 Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L + T+T +VL +K P ++ R + L +L E + Sbjct: 556 ILFEDLKLPIIKKTKTGYSTNAQVLEKLRKKHPIIEKIERYR-EMYKLKSTYLESLEECI 614 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + DGR+R T QN +T +++P+ Sbjct: 615 DEDGRIRSTF-----------------KQN--------------VTATGRLSSTEPNLQN 643 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + +R A +GK L+ AD + IE RVLA +A ++ +AF D++ T Sbjct: 644 LPIRTEEGRKIRKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIHTKTA 703 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F+ +VTK QR+ K + + Y S GL+ N + E Sbjct: 704 SEVFSTPIDEVTKLQRSEAKAVNFGIIYG---------ISDYGLSQNLNIPRKRAKEYIE 754 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + D + ++ + A ED ++ Sbjct: 755 NYLDTYPEIKKYMKDIVKKAKEDGYVN--------------------------------- 781 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 I +RR VP + + ++ R G R LNT Sbjct: 782 ----TIFNRRRYVPEI--------------NSKNFNVRSFGE-RVALNTP---------- 812 Query: 594 GGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD-EFNASM 646 +Q + DI+ M + K IVL +HDEI+ E D E + Sbjct: 813 --------IQGTAADIIKFAMINSYQNLQKAKIDAKIVLQIHDEIIIEASKKDLEKAKEI 864 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 L M L + + ES K Sbjct: 865 LKSSMQDAVDLKVPLLVDIDSGESMYESK 893 >gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1] Length = 927 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 95/613 (15%), Positives = 184/613 (30%), Gaps = 96/613 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-----VMPQV-----LKEALENT 64 D + + A ++ +F H+ +P L+ LE+ Sbjct: 356 DTETTSLDEMA--ARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEVLARLRPWLEDP 413 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALKAVGEALKLSSQ 121 + +++ VL N I + + T++ + P L+++ E Sbjct: 414 AAAKCGQHIKYDQHVLA---NHGILVQGYVHDTMLQSYVLEVHRPHNLESLAERH----- 465 Query: 122 KMEEGKELIAR--FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 G+ + C + P R Y D + + L P Sbjct: 466 ---LGRSAMRYEDLCGKGAAQI------PFARVPIERAAPYACEDAEQCLAVHQVLWPQL 516 Query: 180 SKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + L + + + G +D A +Q + ER + + G+ Sbjct: 517 QAQPALQRIYELEVAVSGVLWRMERHGVLIDAAELQRQSQALG-ERIRALEAEAHALAGM 575 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + +++ + L + T T T + VL + P +V +R Sbjct: 576 PFNLGSPKQIAEVFYDRLKLPVLKKTATGAPSTDEEVLEKLAEDYPLPARVLEHRSL--- 632 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + P P R H Q + Sbjct: 633 ----------------------------VKLKSTYTDKLPTMINPATGRVHTHFAQAVAV 664 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R+ IA G + AD + IE R++A ++ + L+ Sbjct: 665 TGRLASAEPNLQNIPIRTPEGRRIRAAFIAPPGHVIASADYSQIELRIMAHLSQDPALLR 724 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AFE G D++ T A F V+P VT +QR K + L Y +A G++ + Sbjct: 725 AFEQGLDVHRATAAEVFGVSPEHVTPEQRRYAKTINFGLIYGMSPY---GLAKALGIDAS 781 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E + + R E A ++ T R + + S Sbjct: 782 AAKSYI------ERYFERFAGVRAYMEQTRAQARARGYVETVFGR-RLVLPEIQSPNGPR 834 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 +A G A K V + + + + ++L LV+ + Sbjct: 835 RAAAERAAINAPMQGTAADLIKMSMVAVQRALDEQQRRTRMVLQVHDELVFEVPNEEVDW 894 Query: 580 LNTTTRQLTREYT 592 + T +L Sbjct: 895 VRTEVPRLMAAVA 907 >gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171] gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171] Length = 877 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + ++ E+ V V ++ + Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 461 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 866 >gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus] Length = 554 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 97/512 (18%), Positives = 164/512 (32%), Gaps = 79/512 (15%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + GL ++ A+ E L L L+A T E + Sbjct: 58 PEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 114 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E ++ +F L E+ L +L + Sbjct: 115 R----YGGEW---TEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 167 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 168 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHPFNLNSRDQLERVLFDELGLPAIG 226 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 227 KTENTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 255 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 256 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 315 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 316 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 375 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + + Y A + + + E + + R Sbjct: 376 VDPLMRRTAKTINYGVLYGMSAHHLSQ---ELAIPYEEAQAFI------ERYFQSFPKVR 426 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E E ++ T R ++ +RV + + G A K Sbjct: 427 AWIEKTLEEGRRRGYVETLFGR-RRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKL 485 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V L+ ++ ++L LV Sbjct: 486 AMVKLLPRLEEMGA-RMLLQVHDELVLEAPKE 516 >gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] Length = 894 Score = 246 bits (629), Expect = 8e-63, Method: Composition-based stats. Identities = 110/643 (17%), Positives = 195/643 (30%), Gaps = 150/643 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ + I+ H+ E + +I I ++ P+ + + L Sbjct: 373 LKDILEDEHIRIIGHDLKKEII---HFYPYEIHIANLYFDTMVGEYLLNPAKSSYLLKDL 429 Query: 117 KLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE--IFK 173 L G+E+I G+ L P + L V I + Sbjct: 430 ALEYL----GEEIIDEEKIVGKGKNQLSLWAAPENEVKALLCNHVK---VIAELAKYIQE 482 Query: 174 RLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 ++E E L + ++ G VD + L KL E+ SL Sbjct: 483 KIEDQGIHKLYYEVELPLVEVLASMEFLGIKVDRNMLLALEVEFKEIIDKLTSEIYSLA- 541 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284 G+ + ++L LF + GL T+T VL + ++ R Sbjct: 542 GISFNINSPKQLGEVLFEKLGLPPTKKTKTGYSTNADVLEKLQDQHEIIPKISEYRQ--- 598 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 ++ P +R H +Q +T Sbjct: 599 ----------------------------VTKLKTTYVDGLLSIINPVTNRIHSSFNQTVT 630 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I +R I+ EG + + AD + IE RVLA +A + + Sbjct: 631 ATGRISSTEPNLQNIPVRLEMGRRLRKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLI 690 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF +D++ T + F V +VT R K + + Y + + Sbjct: 691 DAFIKNQDIHTRTASEIFEVPMEEVTSLMRGDAKAVNFGIVYGISDFGLSQNLNI----- 745 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A+ + E +P Sbjct: 746 --------------PVSKAKKYIESYFEKYP----------------------------S 763 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRS 578 + +H E+ E G + RR LP +S + R Sbjct: 764 IKEYMHNIVEEGKEKGYVVTLLNRRRY---------------LPELKSSNFNIRSFGERI 808 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEI 632 +NT +Q + DI+ M + A ++L VHDE+ Sbjct: 809 AMNTP------------------IQGSAADIIKIAMIAVYNRLKAENYDAKLILQVHDEL 850 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GYESKRY 673 + E P+ + E + +L M + +PLK + Y + Y Sbjct: 851 IIECPENEIEEVSKILKESMENAIEMV--VPLKVDLSYANNWY 891 >gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459] gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] Length = 875 Score = 246 bits (629), Expect = 8e-63, Method: Composition-based stats. Identities = 94/622 (15%), Positives = 187/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 +D T V +++ + + + I ++LA PS A++ Sbjct: 363 SDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAIRHDYT 419 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEENEQLALMED 475 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 476 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864 >gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255] Length = 882 Score = 246 bits (629), Expect = 8e-63, Method: Composition-based stats. Identities = 108/648 (16%), Positives = 210/648 (32%), Gaps = 150/648 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I D + D L N ++ +N + LK +I Sbjct: 337 IIYIFISVDGEKIYYVDSNEVSK----LDSIFSNNEIKKYGYNLKDDYISLKPY---NIN 389 Query: 90 IHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + +A ++ A+K S+K++ +EL+ + K + +E L + Sbjct: 390 LENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFED 449 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVD 200 + + E + L +S E L + + G VD Sbjct: 450 LAEYMGQIICTVKE----TVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVD 503 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 ++ L+ L++E+ L+ G + ++L LF + L + T+T Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELS-GEPFNINSPKQLGVILFEKLELPIIKKTKTGYS 562 Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 VL + P ++ R + + L+ +N Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQ-IVKLNSTYVEGLLNIIN------------------ 603 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372 P +R H +Q IT +++P+ I +R IA + Sbjct: 604 ------------PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADD 651 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 KLV AD + +E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R Sbjct: 652 NCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA 711 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y +A + + +++ Sbjct: 712 KAVNFGIIYGKSDF---GLADDLNIPVPKAKEYIES------------------------ 744 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551 + K+ ++ E + E+ E+G A+ I +RR +P + Sbjct: 745 -----------------YFAKYHKIKEF---MDTTVEKASEDGYAVTILNRRRYIPEI-- 782 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 K N + R +N +Q + DI+ Sbjct: 783 -KSSNFMERN------------RGKRFAMNAP------------------IQGSAADIIK 811 Query: 612 EGMMNATKAGYD------IVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 M+N K + ++L VHDE++ E D + ++ M Sbjct: 812 IAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEME 859 >gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2] gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2] Length = 890 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 108/675 (16%), Positives = 202/675 (29%), Gaps = 146/675 (21%) Query: 17 TKCGICKYA--EDV---CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71 T+ G+ A E+ V+ A D + L++ LE+ D Sbjct: 326 TEHGLYVEAIGENPHQAEVLGLAAAVGDTAYVVPVAALQQPFTAELRKWLEDADKPKNG- 384 Query: 72 NSYFERTVLKACFNLD-IPIHRWICTLVLARSNGLPSALKAVGEAL--KLSSQKMEEGKE 128 F+ ++ I H + LA P+ AL + + + Sbjct: 385 ---FDTHKIELALGWRGIEWHGAAFDVQLAAYLLDPTDTNLTLNALCDRYGQSSVPHDEA 441 Query: 129 LIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQEL 185 + + K R+ +A R + D+ E++ L EQ L Sbjct: 442 VYGKGAKFKVPDNETLHRHLSAKADAVRKLTSLMRADLEKRGMNELYFEL------EQPL 495 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + +G V+ A L ++ + + E+ L + + ++L LF Sbjct: 496 SVILAGMERQGIKVEKAELERLGSELETKLSAAVSEIYRLA-EMEFNIGSPKQLGEVLFE 554 Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + GL ++ T+T +KL P + +V + Sbjct: 555 KLGLPVQKKTKTGYSTDAEVLEKLAP-------------------YHEIVPLI------- 588 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 L + S+ + P + H Q I + P+ I Sbjct: 589 --LHYRTLSKLQSTYIEGLLKEVRPETGKIHTYYRQTIAATGRLSSQFPNLQNIPIRLEE 646 Query: 361 SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R + SE G ++ AD + IE RVLA ++G++ +AF D++ T F V Sbjct: 647 GRQIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDVFGV 706 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + QV + R K + + Y + + A + E++ + Sbjct: 707 SADQVDSNMRRSAKAVNFGIVYGISDFGLSQ---NLNITRKEAAKFI------EQYFEVF 757 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 R Q +G Sbjct: 758 QGVRKYM--------------------------------------DDIVMQARRDGFVTT 779 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLT 598 +RR LP ++ + R+ +NT Sbjct: 780 LLERRRY---------------LPDIKASNFNLRSFAERTAMNTP--------------- 809 Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP-DTDEFNASMLYHLM 651 +Q + DI+ M+ + ++L VHDE+V E P + E ++ M Sbjct: 810 ---IQGTAADIIKLAMVRMNETLRERGLKSRMLLQVHDELVFEVPEEELELMKELVPSTM 866 Query: 652 TSNPSWAKGLPLKAE 666 + +PLKA+ Sbjct: 867 AG--ALTLDVPLKAD 879 >gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187] gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187] Length = 877 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] Length = 874 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 103/523 (19%), Positives = 177/523 (33%), Gaps = 136/523 (26%) Query: 168 TREIFKRL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 T ++ KRL E + + E L + + G +D + V + ++ ++ Sbjct: 453 TDQLLKRLSGAHLVELMKTLELPLIPVLADMESAGVKLDAEALADFLEEVQKDLDRITED 512 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + G + R ++L LF L + T +T Q VL P + Sbjct: 513 VYREAQG-PFNIRSAQQLGDVLFNRLKLPVSGKTRGGQASTSQDVLEKLSGHHPVVDALL 571 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + L L M DGR+R T Sbjct: 572 EFR-KLEKLRSTYLEPLPRLMGGDGRIRTTF----------------------------- 601 Query: 338 ELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +Q+ T +S+P+ I + +R+C A EGKKL+ AD + IE RVLA + Sbjct: 602 --NQLATATGRLSSSNPNLQNIPVRGALGRRMRACFTAPEGKKLISADYSQIELRVLAHL 659 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ L AF G D++ T + F+ P+++T DQR K + L Y G QK+A Sbjct: 660 SRDETLLAAFREGADIHARTASLLFDAPPSEITPDQRRNAKTINFGLIYGMGP---QKLA 716 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + L+ + + + + EN E A E ++ Sbjct: 717 QELKIPLSEAKAFMA------RYFERLQGLKHFYENVEEMAREQGYV------------- 757 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 +A +RR +P + + + RSL R Sbjct: 758 ------------------------TTLAGRRRPLPDIQAESQQA---------RSLARRQ 784 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626 ++Q + DI+ M+ ++L Sbjct: 785 ------------------------AINTLIQGSAADIIKLAMLAVHGDETLRTLDAKLLL 820 Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAE 666 VHDE++ E P+ A + LM + +PLKA+ Sbjct: 821 QVHDELLLEVPEAAAQEAGERVAALMANVRPGGIVLDVPLKAD 863 >gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] Length = 889 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 100/551 (18%), Positives = 171/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 443 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 502 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + +V +L QE+ L G + ++L LF + GL LE Sbjct: 503 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 561 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + DG++ Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 614 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +A+ G++ + T Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKKAKAYIDTYF------------- 753 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 754 -------------------------------ERFPGIKNYMEEVVREARDKGYVETLFKR 782 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAI 869 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 870 Q--LSVPLIAD 878 >gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365] gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175] gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365] gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220] gi|332312007|gb|EGJ25102.1| DNA polymerase I [Listeria monocytogenes str. Scott A] Length = 875 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 94/622 (15%), Positives = 187/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 +D T V +++ + + + I ++LA PS A++ Sbjct: 363 SDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAIRHDYT 419 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEENEQLALMED 475 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 476 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864 >gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102] gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102] Length = 877 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] Length = 928 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 209/707 (29%), Gaps = 175/707 (24%) Query: 7 DFETRSP---------IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-- 55 D E S +D G+ A + ++ +F + D + Sbjct: 344 DIEELSKKLMPFKEIALDTETTGLE--AMEAEIVGISFSVKKNEAYYIPFPKDQEETKKR 401 Query: 56 --VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110 ++K LEN + N ++ +LK N I + + ++A P + Sbjct: 402 LNIIKPLLENKKSLKIGQNIKYDLLILK---NYGIEVVGKLFDTMIAHYVVQPELRHNMD 458 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + E + ++LI + R Y D +T + Sbjct: 459 YLAEIY--LNHITIPIEDLIG----PKGKNQKSMRELSPED-----VYIYACEDADITFQ 507 Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + +E + E L + + G +D +L++ +++ Sbjct: 508 LKNAIEKDLKENQAEELFYTIEMPLVPVLTDMEYTGVLLDKKALKSLSKDFTDRLITIEE 567 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQ 275 E+ L + +++ LF + + T+T T + VL S K P + Sbjct: 568 EIHKLADN-DFNVSSPKQVGEILFDKLKIDEKAKKTKTGQYVTSEEVLLSYKDKHPIVEK 626 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + + G + P + + Sbjct: 627 IL-------------------------------DYRGLKKLLSTYVDALPKLINKKTGKI 655 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H +Q +T +S+P+ I +R I + AD + IE R++A Sbjct: 656 HTSFNQTVTATGRLSSSNPNLQNIPIRDSDGKEIRKAFIPDQDSLFFSADYSQIELRIMA 715 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++AF G+D++ T A+ + +T DQR K + Y Sbjct: 716 HLSHDNNMMEAFLHGDDIHAATAAKVYKQDINTITSDQRRKAKTANFGIIYGISVF---G 772 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A + L++ E +P Sbjct: 773 LAERMQVERKEAKELIEG----------------YFETYP-------------------- 796 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ + Q+ + E G R+ LP S Sbjct: 797 --------QVKEYMDQSIVEAREKGYVETIFNRKRY---------------LPDINSRNA 833 Query: 571 RDVG-NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYD 623 G + R+ +N +Q + DI+ M+N K Sbjct: 834 VVRGFSERNAINAP------------------IQGSAADIIKVAMVNIHKRFKEEKLLSK 875 Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 ++L VHDE+ P E ++ M + ++ +PLKA+ G+ Sbjct: 876 MILQVHDELNFTVIPSEKEKVQQIVIQEMEN--AYKLSVPLKADFGW 920 >gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] Length = 945 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 111/680 (16%), Positives = 202/680 (29%), Gaps = 154/680 (22%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNS 73 D G+ ++ L F P + W V P + ++ LE + H+ Sbjct: 383 DTETTGLNPLMDN----LLGVSFCAEPHKAWYMPVSGPADLEAVRPLLEGPA-EKIGHHL 437 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132 F+ VL+A I + +LA + P A L + K++ A Sbjct: 438 KFDLEVLRA---NGIHVKGPFFDTLLAHALIAPGMKHGMDVLAENLLQYSTIKLKDIAAP 494 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------E 182 K R + G+Y D +T ++ L+ + E Sbjct: 495 GAK--------KRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKESGMEKLFRTVE 546 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + G V + V L + +E G + ++L + Sbjct: 547 LPLLPVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEE-AAGHPLNLNSPKQLGDF 605 Query: 243 LFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF E L T+T T + LS+ P + R Sbjct: 606 LFGELELVKKPKKTKTGQFVTDEDTLSALAPQHPIIADILAYRENM-------------- 651 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + P PR R H + Q++T + DP+ Sbjct: 652 -----------------KLKSTYLDALPKYICPRDGRIHTQFHQMLTATGRLASQDPNLQ 694 Query: 358 QII-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R+ + ASE ++ AD + IE R++A ++G+ AF G D++ Sbjct: 695 NIPVRTEQGRLIRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREGRDIHTE 754 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T AR + + QV R K + + Y A + G A L+ Sbjct: 755 TAARVYGIPRDQVDAVMRRAAKTVNFGIIYGISAFGLSQ---RLGCPRGEAATLI----- 806 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + + E+ A + + T R R+ + + +T Sbjct: 807 -ENYFTQFPVVKSFMEDLVHKAEQAGYAETLLGR-----RRMIPEI--------NSANKT 852 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 I++ R+ +NT Sbjct: 853 IKSAA---------------------------------------ERTAINTP-------- 865 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNASML 647 +Q + D++ M++ K ++L +HDE++ + + + Sbjct: 866 ----------IQGTAADMIKIAMIHVDKLLKGTRSRLILQIHDELLVDLHRDELDLIPKI 915 Query: 648 YHLMTSNPSWAKGLPLKAEG 667 M S G+P+ E Sbjct: 916 EEAMVSALPLPNGVPILVEA 935 >gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured Planctomycetales bacterium HF0500_02G17] Length = 987 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 109/648 (16%), Positives = 198/648 (30%), Gaps = 137/648 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDI-------PIHRWIC-TLVLARSN--GLP 106 L+ LE+ + HN ++ VL+ +++ W ++A Sbjct: 430 LRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIASYLVDASR 488 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETH-ECLYDRNKPNHREAWRLFGEYCKGDV 165 S+ A+ L ++ ELI K +T DR P Y D Sbjct: 489 SSHSMDALAMALLERRNIPISELIGTGKKQKTFDTVPLDRATP-----------YAAEDA 537 Query: 166 TVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 VT ++ +RL P + E L + + G VD ++ Sbjct: 538 DVTLQLCQRLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDRQRGRIEGRV 597 Query: 216 TKLDQELESLTYGL---VSSSRCLEKLKTWLFLE-------TGLHLEDLTETTCQRVLSS 265 L ++ G + ++L LF + GL + +T Sbjct: 598 KDLRNQIADEAMGAVGREFDADSPKQLAGVLFNKPDAADPGLGLRVIKRGKTGPSTDAEV 657 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 +KL+ A S + L L++ ++ Sbjct: 658 LEKLSQDA------------SVKTPIPDL------------ILEYRQLTKLVNTYLVNLV 693 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380 + PR R H +Q + +SDP+ I + +R +A G LV AD Sbjct: 694 EEIDPRTKRIHASFNQTVAATGRLSSSDPNLQNIPIRTELGREIRKAFVAEPGHLLVAAD 753 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA ++ + ++AF G+D++ A+ +V A+V+++QR K++ + Sbjct: 754 YSQIELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKMVNFGIV 813 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A +A G++ + ++ + F + + Sbjct: 814 YGVTAF---GLARRLGVSNSEAGEIID--GYKRRFAGITTFLEECIAQAHAQGYVETMMK 868 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 ++ SR + ++ G A K V L Sbjct: 869 R-----RRPIPDIDSRDQNRRALAERMAINSVVQGSAADLIKIAMVDL------------ 911 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R L R G Sbjct: 912 ----HRRLSPR------------AAAWREGA--GP----------------------EIE 931 Query: 621 GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 G ++L +HDE+V E P D E ++ M + A +PL A+ Sbjct: 932 GVRMLLQIHDELVFEAPKDRAEAVRDLIVARMEAAM--ALDVPLVADA 977 >gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150] Length = 880 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 114/677 (16%), Positives = 210/677 (31%), Gaps = 171/677 (25%) Query: 28 VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 ++ + + D V D + P+ + L + T A Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVSTSDLLQQPLFQEFLTKTALKTYDLKRA------ 379 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCK 135 VL + + +++P LA+ + +L Q + E+ + K Sbjct: 380 -KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK 436 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLD 189 R P+ + + + + + ++L L EQ L ++ Sbjct: 437 ---------RALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVL 487 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + + L QE+ L G + ++L T LF + GL Sbjct: 488 AKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGL 546 Query: 250 HLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 LE T+T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 547 PLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK- 604 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 H Q +T + DP+ I Sbjct: 605 ------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLE 634 Query: 361 -SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F Sbjct: 635 QGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFG 694 Query: 419 VAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + VT + R K + + Y +A+ G++ ++T Sbjct: 695 IEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF------- 744 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-K 536 R + N + + + G Sbjct: 745 -------------------------------------ERFPGIKNYMETIVREARDKGYV 767 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 I +RR +P + + R+ R+ R+ +N+ Sbjct: 768 ETIYHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799 Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649 +Q + DIL M+N +A ++L VHDEIV E P + L Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKE 854 Query: 650 LMTSNPSWAKGLPLKAE 666 M + A +PL A+ Sbjct: 855 TMEAAIKLA--VPLVAD 869 >gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 877 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 356 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 462 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 522 LA-GREFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563] gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563] Length = 926 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 105/668 (15%), Positives = 213/668 (31%), Gaps = 153/668 (22%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-----LKEALENTDVTI 68 +D G+ + + +I +F + D + + + E L D+ + Sbjct: 360 VDFETTGLDVFKD--TIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDMVFETLAKEDIKV 417 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + HN +E +++A ++ ++A P+ M++ Sbjct: 418 IGHNLKYEYKMMRA---INKSFGNMYFDTMVAAYLINPTR----------GRYNMDDLA- 463 Query: 129 LIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----- 181 IA N K + EY D +T ++ PL Sbjct: 464 -IAYLSYNTIKYSDITDNAKKTLLDVPLKDVVEYACEDADITFRFYECFAPLLKTHNLEE 522 Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + + G + L+ K +++ + G + + Sbjct: 523 LFFNIEMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIYAEA-GEEFNIQSP 581 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+ LF + G+ T+T +L S K+ Sbjct: 582 KQLEYILFDKMGIPPTKKTKTGFSTDEEVLTEL----------------SQKYKIAEY-- 623 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 L + ++ VFP + R H +Q +T +S+P+ Sbjct: 624 ----------MLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNL 673 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R+ IA +G L+ AD + IE R+LA + + ++AF+ +D++ Sbjct: 674 QNIPVRGEEGREIRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRK 733 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + ++V+ VT R I K++ ++ Y A ++ G+ Sbjct: 734 TAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAF---GLSKELGIKRK----------- 779 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 +AE+F + + + CE V + R + + +T Sbjct: 780 -----EAEDFIKGYFSTYSR-------VKPFCEEVVEEVRN-------------KGYVRT 814 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 M +L + S ++ + R LNT Sbjct: 815 -------------------MCGRIRDLSKTINSSNAMARNEA--ERMALNT--------- 844 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644 ++Q + D++ M+ K IV+ VHDE+V E + + A Sbjct: 845 ---------LIQGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEADKAM 895 Query: 645 SMLYHLMT 652 +++ +M Sbjct: 896 TIMKEIME 903 >gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676] gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676] Length = 891 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630] gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42] gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile] Length = 882 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 108/648 (16%), Positives = 210/648 (32%), Gaps = 150/648 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I D + D L N ++ +N + LK +I Sbjct: 337 IIYIFISVDGEKIYYVDSNEVSK----LDSIFSNNEIKKYGYNLKDDYISLKPY---NIN 389 Query: 90 IHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + +A ++ A+K S+K++ +EL+ + K + +E L + Sbjct: 390 LENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFED 449 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVD 200 + + E + L +S E L + + G VD Sbjct: 450 LAEYMGQIICTVKE----TVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVD 503 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 ++ L+ L++E+ L+ G + ++L LF + L + T+T Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELS-GEPFNINSPKQLGVILFEKLELPIIKKTKTGYS 562 Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 VL + P ++ R + + L+ +N Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQ-IVKLNSTYVEGLLNIIN------------------ 603 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372 P +R H +Q IT +++P+ I +R IA + Sbjct: 604 ------------PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADD 651 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 KLV AD + +E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R Sbjct: 652 NCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA 711 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y +A + + +++ Sbjct: 712 KAVNFGIIYGKSDF---GLADDLNIPVPKAKEYIES------------------------ 744 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551 + K+ ++ E + E+ E+G A+ I +RR +P + Sbjct: 745 -----------------YFAKYHKIKEF---MDTTVEKASEDGYAVTILNRRRYIPEI-- 782 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 K N + R +N +Q + DI+ Sbjct: 783 -KSSNFMERN------------RGKRFAMNAP------------------IQGSAADIIK 811 Query: 612 EGMMNATKAGYD------IVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 M+N K + ++L VHDE++ E D + ++ M Sbjct: 812 IAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEME 859 >gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] Length = 877 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 108/657 (16%), Positives = 205/657 (31%), Gaps = 152/657 (23%) Query: 29 CVILFAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 ++ FA+G + + + D + P+ + +N R +L + Sbjct: 343 QIVAFAWG-NAEKIYVSKNIDLLTKMKFPENTYDFKKN-------------RVLLSH-LD 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P+ +LA+ + + +L + E I F KG D Sbjct: 388 IELPL--VKFDAMLAKYLISTTEDNKISTIARLFNSGHLATDEEI--FGKGTKIALPDDA 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H K + ++ LS E L + + G V Sbjct: 444 VLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLE 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262 + + + L +E+ L G + ++L LF + L + T+T V Sbjct: 504 EIGAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDV 562 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L L+P ++ R ++ Sbjct: 563 LEDLAALSPVVAKILEYRQ-------------------------------INKVQSTYVK 591 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 PQ + + H Q +T + DP+ I +R + S+ L+ Sbjct: 592 GLIPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436 +D + IE RVLA ++G++ + AF+ G D++ +T R F + VT + R K + Sbjct: 651 SSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVN 710 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y +A G+ + ++T + + + EN A + Sbjct: 711 FGVVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDK 761 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 F+ T ++ +RR +P + Sbjct: 762 GFVET-------------------------------------MSHRRRKIPDI------- 777 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + R+ R R+ +N+ +Q + DIL M+N Sbjct: 778 -------NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMIN 811 Query: 617 ATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 KA ++L VHDEI+ + P + L M A +PLK + Sbjct: 812 LDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEAIELA--VPLKVD 866 >gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] Length = 886 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 98/629 (15%), Positives = 192/629 (30%), Gaps = 137/629 (21%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAV 112 ++ L + V ++ + R L ++ + A + + + Sbjct: 366 EVRAWLADEQVPKRGYDLH--RADLVLFWHGVAFAGAEHDVQLAAYLLDPTESDQTISGL 423 Query: 113 GEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 +L ++ E+ + K + R+ +A + D+ E+ Sbjct: 424 AAKYQLPQVPGDD--EVYGKGAKFKVPEPDVLSRHLARKADALLRILPLQREDL-AKYEM 480 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 K L E L + + +G V+ L + + KL + + G Sbjct: 481 EKLFYEL---EMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVARIYEIA-GQEF 536 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L LF + GL + T+T +KL P Sbjct: 537 NINSTKQLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAP-------------------Y 577 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + + ++ L++ ++ + P+ + H Q I + Sbjct: 578 HEI---------VQFILEYRQLAKLQSTYVEGLLKEISPKTGKVHTYFRQTIAATGRLSS 628 Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 P+ I +R + SE G ++ AD + IE RVLA ++G+ +AF Sbjct: 629 QYPNLQNIPIRLEEGRKIRKVFVPSEEGWFILSADYSQIELRVLAHISGDPGLQEAFLHD 688 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T F V P QV + R K + + Y + + A Sbjct: 689 MDIHTKTAMDVFGVGPDQVDANMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAARF 745 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + E++ +A R + + A D Sbjct: 746 I------EQYFNAFQGVRRYMDEIVKAAKRDG---------------------------- 771 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTT 584 K ++ R+R LP + + R+ +NT Sbjct: 772 --------YVKTLLERRRY-----------------LPEINASNFNLRSFAERTAMNTP- 805 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPD 638 +Q + DI+ M+ + + ++L VHDE+V E P Sbjct: 806 -----------------IQGTAADIIKLAMVRMDEELHKHGLKSRMLLQVHDELVFEVPP 848 Query: 639 TD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + EF + ++ M +PLKAE Sbjct: 849 EELEFMSKLVPETMGKALE--LSVPLKAE 875 >gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405] Length = 880 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 118/677 (17%), Positives = 219/677 (32%), Gaps = 171/677 (25%) Query: 28 VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75 ++ + + D V D + P+ + L K AL+ D+ Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQEFLTKTALKTYDLKRT------ 379 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134 VL + + +++P LA+ + +L Q + E+ + Sbjct: 380 --KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188 K R P + + + + + ++L L EQ L ++ Sbjct: 436 K---------RALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFV 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V+ + + L QE+ L G + ++L T LF + G Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545 Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L LE T+T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK 604 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 H Q +T + DP+ I Sbjct: 605 -------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRL 633 Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVF 693 Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + VT + R K + + Y +A+ G++ ++T E + Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +N+ E + + R + + +TI Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 +RR +P + + R+ R+ R+ +N+ Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799 Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649 +Q + DIL M+N +A ++L VHDEIV E P+ + L Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854 Query: 650 LMTSNPSWAKGLPLKAE 666 M + A +PL A+ Sbjct: 855 TMEAAIELA--VPLVAD 869 >gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045] Length = 876 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 105/664 (15%), Positives = 202/664 (30%), Gaps = 147/664 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F + + D + L + LE+ + T + +++ + V Sbjct: 328 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++I ++LA P ++ V + L Q K+ I F KG+ H Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 439 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + H VT T E + ++E L E L + + + G Sbjct: 440 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 D+ + + + L + + G + ++L LF L + T+T Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554 Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 VL + P + R A + Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 583 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 + + R H +Q + + DP+ I +R Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 642 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 S+ ++ AD + IE RVLA + ++ AF G D++ T + FNV QV R Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + + G+ + ++ + + + Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 753 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A ++ T +RR +P + Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + RS R+ +NT +Q + DI Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662 + M+ TK ++L VHDE++ E P ++ E + + +M +P Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861 Query: 663 LKAE 666 LK + Sbjct: 862 LKVD 865 >gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003] gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003] Length = 913 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 113/693 (16%), Positives = 203/693 (29%), Gaps = 160/693 (23%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-----VMPQV--- 56 D ET S +T ++ +F + H +P+ Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPREEVL 388 Query: 57 --LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ V + ++ VL I TL+ + Sbjct: 389 AKLKPWLESAQQKKVGQHLKYDEQVLANYGIEMRGIE--HDTLLQSYVLESHRPHDMDNL 446 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ K + +++ + + + + + +T + + Sbjct: 447 ALRHLGVKTIKYEDVAGKGAQQIGFDEVALEKAAEYAAEDA----------DITLRLHQT 496 Query: 175 LEPLSSKE--QELWYLDQT---------INDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + P + E E Y D + G +D + + +L+ + Sbjct: 497 MYPQLAAEKTLENVYRDIEVPTSRVLRKMERTGVLIDAEKLRQQSNEIATRLIELESKAY 556 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ F + L + +T + VL + P + + Sbjct: 557 ELAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R G S+ P R H Sbjct: 616 R-------------------------------GLSKLKSTYTDKLPRMVNASTGRVHTNY 644 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q + ++DP+ I +R IA G KLV AD + IE R++A ++G Sbjct: 645 AQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISG 704 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ L+AF GED++ T A F+V P +V+ DQR + KV+ L Y + +AS Sbjct: 705 DESLLRAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSF---GLASN 761 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + + R+M E A ++ T R + + + Sbjct: 762 LGITRDAAKLYID-----RYFARYPGVARYMDETRL-SAKAKGYVETVFGR-RLWLPEIN 814 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 +A G A K + Sbjct: 815 GGNGPRRQAAERAAINAPMQGTAADLIKLSMI---------------------------- 846 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 ++ E G ++ I+Q VHDE++ Sbjct: 847 --------AVQKWIEESNIGTRM---IMQ------------------------VHDELIL 871 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 E PD + L LM A +PL AE Sbjct: 872 EVPDEELPEVRKRLPELMCGVA--ALKVPLVAE 902 >gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus] Length = 878 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 87/612 (14%), Positives = 185/612 (30%), Gaps = 133/612 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 LE+ + LK +++ L++A PS + + V K Sbjct: 363 LEDETKKKSVFDGKRAIVALK-WKGIEL--RGIEFDLLIASYLLNPSQSTEDVASVAKTK 419 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + E + + KG ++ H + + + ++ + Sbjct: 420 QYMAVQSDEAV--YGKGAKQTVPEEKALAEHLVRKAAAIRALEKEFIHDLQENEQYALFT 477 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VDV + + + + ++QE+ L G + ++L Sbjct: 478 DLELPLSSILAEMEFTGVKVDVERLKEMGEELTEQLRAVEQEIYELA-GQEFNINSPKQL 536 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL ++ + R + + L++ Sbjct: 537 GVILFEKLQLPVLKKTKTGYSTSADVLEKLAPQHEIVEKILHYRQL-GKLQSTYIEGLLK 595 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ D + H +Q +T +++P+ Sbjct: 596 VVHCD------------------------------THKVHTIFNQALTQTGRLSSTEPNL 625 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + S + AD + IE RVLA +A ++ + AF D++ Sbjct: 626 QNIPIRLEEGRKIRQAFVPSKPDWVIFSADYSQIELRVLAHIANDENLIDAFRHDLDIHT 685 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+V +VT + R K + + Y + + A + Sbjct: 686 KTAMDIFHVTADEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLNIPRKEAAEFI---- 738 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + + EN + A + ++ Sbjct: 739 --RRYFEIFPGVKQYMENIVQEAKQKGYV------------------------------- 765 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + +RR +P + + + RS R+ +NT Sbjct: 766 ------TTLLHRRRYLPDITSRNF---------NLRSFA------ERTAMNTP------- 797 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ + M++ K ++L VHDE++ E P + Sbjct: 798 -----------IQGSAADIIKKAMIDLADRLKQEKLQARMLLQVHDELILEAPKEEVKRL 846 Query: 645 SMLY-HLMTSNP 655 + +M + Sbjct: 847 QQIVPEVMENAI 858 >gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56] Length = 877 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 108/657 (16%), Positives = 205/657 (31%), Gaps = 152/657 (23%) Query: 29 CVILFAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 ++ FA+G + + + D + P+ + +N R +L + Sbjct: 343 QIVAFAWG-NAEKIYVSKNIDLLTKMKFPENTYDFKKN-------------RVLLSH-LD 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +++P+ +LA+ + + +L + E I F KG D Sbjct: 388 IELPL--VKFDAMLAKYLISTTEDNKISTIARLFNSGHLATDEEI--FGKGTKIALPDDA 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 H K + ++ LS E L + + G V Sbjct: 444 VLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLE 503 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262 + + + L +E+ L G + ++L LF + L + T+T V Sbjct: 504 EIGAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDV 562 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L L+P ++ R ++ Sbjct: 563 LEDLAALSPVVAKILEYRQ-------------------------------INKVQSTYVK 591 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 PQ + + H Q +T + DP+ I +R + S+ L+ Sbjct: 592 GLIPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLL 650 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436 +D + IE RVLA ++G++ + AF+ G D++ +T R F + VT + R K + Sbjct: 651 SSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVN 710 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y +A G+ + ++T + + + EN A + Sbjct: 711 FGVVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDK 761 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 F+ T ++ +RR +P + Sbjct: 762 GFVET-------------------------------------MSHRRRKIPDI------- 777 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + R+ R R+ +N+ +Q + DIL M+N Sbjct: 778 -------NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMIN 811 Query: 617 ATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 KA ++L VHDEI+ + P + L M A +PLK + Sbjct: 812 LDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEAIELA--VPLKVD 866 >gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000] Length = 877 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 107/655 (16%), Positives = 202/655 (30%), Gaps = 152/655 (23%) Query: 32 LFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + AF + + D + + P+ + +N R +L N++ Sbjct: 344 IVAFAWGNSEKIYVSKNLDLLTEMKFPENTYDFKKN-------------RVLLSH-LNIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 +P+ +LA+ + + +L E I F KG D Sbjct: 390 LPL--VKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI--FGKGTKLALPDDEIL 445 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +H K + ++ LS E L + + G V + Sbjct: 446 FDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEI 505 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLS 264 + + L +E+ L G + ++L LF + L + T+T VL Sbjct: 506 GAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLE 564 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 L+P ++ R ++ Sbjct: 565 DLAALSPVVAKILEYRQ-------------------------------INKVQSTYVKGL 593 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379 PQ + + H Q +T + DP+ I +R + S+ L+ + Sbjct: 594 IPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSS 652 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438 D + IE RVLA ++ ++ + AF+ G D++ +T R F + VT + R K + Sbjct: 653 DYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y +A G+ + ++T + + + EN A + F Sbjct: 713 VVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDKGF 763 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + T ++ +RR +P + Sbjct: 764 VET-------------------------------------MSHRRRKIPDI--------- 777 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R+ R R+ +N+ +Q + DIL M+N Sbjct: 778 -----NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMINLD 813 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 KA ++L VHDEI+ + P + + L M A +PLK + Sbjct: 814 KALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA--VPLKVD 866 >gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] Length = 876 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 104/664 (15%), Positives = 200/664 (30%), Gaps = 147/664 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F + + D + L LE+ + T + +++ + V Sbjct: 328 YLKDA-ILKFGFYTNHQ--HVVINADDVKNYKNLVRWLEDKNTTKIVYDAK-KTYVSAHR 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++I ++LA P ++ V + L Q K+ I F KG+ H Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVGLYGQ--NYVKDNITVFGKGKKHHIP 439 Query: 143 YDRNKPNHREAWRLFGEYCKGDVT----VTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + H VT E + ++E L E L + + + G Sbjct: 440 EESILNEH----IASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 D+ + + + L + + G + ++L LF L + T+T Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554 Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 VL + P + R S+ Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQL-------------------------------SK 583 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 + + R H +Q + + DP+ I +R Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKP 642 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 S+ ++ AD + IE RVLA + ++ AF G D++ T + FNV QV R Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + + G+ + ++ + + + Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKKAKAFID------DYLASFPGVKQYMSDI 753 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A ++ T +RR +P + Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + RS R+ +NT +Q + DI Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662 + M+ TK ++L VHDE++ E P ++ E + + +M +P Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861 Query: 663 LKAE 666 LK + Sbjct: 862 LKVD 865 >gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816] Length = 694 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 94/622 (15%), Positives = 187/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 +D T V +++ + + + I ++LA PS A++ Sbjct: 182 SDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAIRHDYT 238 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 239 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEENEQLALMED 294 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 295 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 353 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 354 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 398 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 399 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 442 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 443 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 502 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 503 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 559 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 560 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 596 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 597 ----------------------------------RNFNVRGF-AERTAMNTP-------- 613 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 614 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 663 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 664 EIVPDVMENAVE--LSVPLKVD 683 >gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] Length = 889 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 443 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 502 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + +V +L QE+ L G + ++L LF + GL LE Sbjct: 503 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 561 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + DG++ Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 614 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 753 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKALVKQTMEEAI 869 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 870 Q--LSVPLIAD 878 >gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238] gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238] Length = 928 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 100/642 (15%), Positives = 179/642 (27%), Gaps = 158/642 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 +LK LE+ + + N ++ + K I + T++++ + Sbjct: 405 ILKPMLEDDSILKIGQNMKYDAKIFKRV---GITVDPIDDTMLMSYAMNA---------- 451 Query: 116 LKLSSQKMEEGKELIARFC-KGETHECLYDRNK---PNHREAWRLFGEYCKGDVTVTREI 171 L+ M+ E + L K R +Y D +T + Sbjct: 452 -GLNRHSMDVLSE--QYLGHTPIPIKPLLGAGKSAITFDRVPVEEAVKYAAEDADITLRL 508 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ L+P + E+ L + + G VD ++ + L+ E Sbjct: 509 WQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGIKVDRDTLSRMSNAFAQKMAGLEDE 568 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 L L G + ++ LF + GL + T +L V Sbjct: 569 LYELAGG-KFNVGSPAQVGEILFDQMGLEGGKKGKTGKYATGADILEDLATEHGFPGLVL 627 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + R S+ R H Sbjct: 628 DWRQL-------------------------------SKLKSTYTDALQTHINSETGRVHT 656 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 + ++DP+ I +R IA EGK LV D + IE R+LA + Sbjct: 657 SYSITGANTGRLSSTDPNLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHV 716 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 A +AF G D++ T + FNV ++T D R K + + Y + Sbjct: 717 ANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNL 776 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 +A+ F E P I T + + Sbjct: 777 RI-------------------PRAEAQGFIDRYFERFP--GIRTYMDDTVA------FAK 809 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 +H+RV L+ + P + Sbjct: 810 EHNRVETLFGR-----------------------------------KIHTPEINAKGPGA 834 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTV 628 R+ +N +Q + D++ M+ A ++L V Sbjct: 835 GFAKRAAINAP------------------IQGTAADVIRRAMIRMDAAIAHLPAKMLLQV 876 Query: 629 HDEIVCETPDTDEFNASMLY-HLM--TSNPSWAKGLPLKAEG 667 HDE+V E + +M +NP +PL + Sbjct: 877 HDELVFEVDKDAAHDLIAAAREVMENAANPVVKFDVPLVVDA 918 >gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3] gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3] Length = 891 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 98/638 (15%), Positives = 202/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKYTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLEKLMDRHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + + + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMSDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M +PLK + Sbjct: 845 DELIFEAPKEEIGKLEKLVPEVMEHAIELV--VPLKVD 880 >gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] Length = 880 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 99/623 (15%), Positives = 199/623 (31%), Gaps = 137/623 (21%) Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLS 119 E+ + ++ + L +I + I +LA P+ A + S Sbjct: 366 EDPQKHKIVFDAKRTKVAL---LRNNINMQGIIFDSLLASYLLNPAENNHDIPAIANRKS 422 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 ++ +E+ F KG + H ++ ++ E L Sbjct: 423 RSDVQFDEEV---FGKGAKQKVPEADVLNEHVVRKTQLLFDLYPEMEEELGNNEQYELLK 479 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VD+ + + + + L+QE+ L G + ++L Sbjct: 480 ELEMPLALILAEVEHYGVQVDIDKLKDMGEDLKERLSTLEQEVYELA-GETFNLNSPKQL 538 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + GL + T+T T VL + ++ R + + L++ Sbjct: 539 GPILFEKLGLPVIKKTKTGYSTAADVLEQLENEHDIIPKLLMYRQL-GKLQSTYIEGLLK 597 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + D SR H +Q +T + +P+ Sbjct: 598 VVRKD------------------------------TSRIHTRYNQALTQTGRLSSIEPNL 627 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + S + + AD + IE RVLA +AG++ +KAF+ D++ Sbjct: 628 QNIPIRLEEGRKIRQAFVPSKDNWIMFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHT 687 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+V +VT + R K + + Y + G+ + Sbjct: 688 QTAMDVFHVESDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKKFI---- 740 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + ++ + + + A F+ T Sbjct: 741 --ERYFNSYPGVKTYMDEIVQEAKHKGFVST----------------------------- 769 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 I ++RR +P + + + RS R+ +NT Sbjct: 770 --------IMKRRRYLPDITSRNF---------NMRSFA------ERTAMNTP------- 799 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ + M++ +++L VHDE++ E P+ + Sbjct: 800 -----------IQGSAADIIKKAMIDLDHRLKEENLQANVLLQVHDELILEAPENEIDKL 848 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 849 KEIVPDVMENTVE--LDVPLKVD 869 >gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo] gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo] Length = 889 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 106/693 (15%), Positives = 217/693 (31%), Gaps = 166/693 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57 + ID ET S + Y +I + F + + ++ Sbjct: 322 KYISIDTETSS--------LDIY--TARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 371 Query: 58 KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 ++ L ++ I+ N F+ +LK IP + T++ A S + A Sbjct: 372 QKFNNLFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 429 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF--- 172 K K + +++I +N + + Y D +T +F Sbjct: 430 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIF 476 Query: 173 -KRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 K+L+ + E + + + G +D + + E ++ E+ Sbjct: 477 TKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEIIK- 535 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G+ + +++ LF + L L + + T +VL S + +R A Sbjct: 536 SIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHRQIA 595 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L+E +N + +R H Q Sbjct: 596 KLKSTYT-DNLIELINH------------------------------KTNRLHTSFIQTK 624 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T + +P+ I +R G + AD + IE +LA ++ ++ Sbjct: 625 TATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 684 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +KAFE +D++ T ++ F + ++T D R I K + + Y+ ++A G+ Sbjct: 685 IKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDF---RLAKELGIT 741 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 E+A+ F +++ ++ Sbjct: 742 ----------------KEEAKGFINSYFDSY-------------------------PKIK 760 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + ++ S L R + Sbjct: 761 EF------------------------ITNQINFVRNTGY------SETILKRRRYIKEIN 790 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 N R +I+Q + DI+ M+ K I+L VHDE+ Sbjct: 791 SNNYLERSAAERIA-----INSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEM 845 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + E+P ++ + +M ++ LPL+A Sbjct: 846 LIESPIKEKNEVEKILKIMMET-AYTLNLPLRA 877 >gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium] Length = 942 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 91/557 (16%), Positives = 181/557 (32%), Gaps = 77/557 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115 + E+ T++ N ++ VLK N I I + ++A +P A Sbjct: 418 FRSLFEDDTKTLIGQNIKYDFQVLK---NYGIEIKNKLFDTMVAHFLIMPEMRHNMDILA 474 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + LI + K +T EY D VT ++ Sbjct: 475 QTYLNYSPVSIETLIGKKGKEQTS---------MRDVEIEKIKEYAAEDADVTFQLKTAF 525 Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P + E L + I G +DV + + + +++E++ Sbjct: 526 APKLIENEVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEIQDF 585 Query: 226 TYGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 G + +++ LF + T+T T + VLS + P ++ Sbjct: 586 A-GTKFNVSSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENAHPIVSKIL--- 641 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + P + R H + Sbjct: 642 ----------------------------DYRELVKLKNTYVDTLPELVNEKTKRIHTSFN 673 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q++ + +P+ I +R I + L+ AD + IE R++A ++G Sbjct: 674 QVVAVTGRLSSDNPNLQNIPIRTERGRQIRKAFIPRDSDHVLLSADYSQIELRIVASISG 733 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ +AF+ G+D++ T A+ F VA A VTK+ R K + + Y GA ++ Sbjct: 734 DKNMCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVNFGIIYGQGAF---GLSEN 790 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 ++ L+ + + + A E+ ++ T R K+ R Sbjct: 791 LNISRTEAKELIDN------YFKEYGAIKSYMDRTINFARENGYVKTLLGR-KRWLRDIT 843 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDV 573 S + + + + G A K + + + +N ++L LV+ Sbjct: 844 SANATVRSYAERNAINAPIQGSAADMIKVAMINIYNELEKQNFKTKMLLQVHDELVFDVY 903 Query: 574 GNNRSYLNTTTRQLTRE 590 + +L RE Sbjct: 904 KPELEKVKPIIEKLMRE 920 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 24/98 (24%) Query: 585 RQLTREYT--------YGGK-LTENIVQAVSRDILAEGMMNATKAGYD------IVLTVH 629 ++ R+ T Y + +Q + D++ M+N ++L VH Sbjct: 836 KRWLRDITSANATVRSYAERNAINAPIQGSAADMIKVAMINIYNELEKQNFKTKMLLQVH 895 Query: 630 DEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 DE+V + P+ ++ ++ LM LPL Sbjct: 896 DELVFDVYKPELEKVK-PIIEKLMREA------LPLDV 926 >gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44] gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44] Length = 884 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 100/647 (15%), Positives = 202/647 (31%), Gaps = 156/647 (24%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D + + L + D+ ++ R ++ + D+ I L++A Sbjct: 357 DVALGS---EAFTKWLADEDMRKYTFDAK--RAIVALKW-KDVEIKGIDFDLLIAAYLLD 410 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 P+ A+ KM+E + ++ E +Y + + E+ V Sbjct: 411 PADTDKDFRAVA----KMKETHAV-------KSDEEVYGKGAKRAVPEQGVVAEHVARKV 459 Query: 166 TV----------TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 V E ++ E + E L + + +G VD + + Sbjct: 460 HVLFDVQKTFVEELEKNEQYELFTELEMPLARVLAEMEVKGVKVDTERLRNMGDELAGRL 519 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQ 272 +++Q++ L G + ++L LF L + T+T VL Sbjct: 520 KEMEQKIYELA-GTEFNINSPKQLGVVLFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI 578 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + + R + + L++ ++ D Sbjct: 579 IPNILHYRQL-GKLNSTYIEGLLKVVHED------------------------------S 607 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEA 386 S+ H +Q++T ++DP+ I +R I S EG + AD + IE Sbjct: 608 SKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSTEGWVMYAADYSQIEL 667 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA +A ++ ++AF+ D++ T F V +VT + R K + + Y Sbjct: 668 RVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFGIVYGISDY 727 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + G+ + E++ + + + + A + ++ T R Sbjct: 728 GLSQ---NLGITRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR- 777 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 R+ ++ R Sbjct: 778 ----RRYIPEITS----------------------------------------------R 787 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG- 621 + R R+ +NT +Q + DI+ + M+ + G Sbjct: 788 NFNLRSF-AERTAMNTP------------------IQGSAADIIKKAMIIMANRLEEEGL 828 Query: 622 -YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + L +M A +PLK + Sbjct: 829 QARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVD 873 >gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] Length = 880 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 117/666 (17%), Positives = 218/666 (32%), Gaps = 161/666 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A+G D + + D + P+ + L + T A VL + + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRA-------KVLLSHYGI 388 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145 ++P LA+ + +L Q + E+ + K R Sbjct: 389 ELPA--ATFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK---------R 437 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCV 199 P + + + + + ++L L EQ L ++ + G V Sbjct: 438 ALPEQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLAKMEIAGIKV 497 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET 257 + + + L QE+ L G + ++L T LF + GL LE T+T Sbjct: 498 ERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTKT 556 Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 VL + P ++ R S+ + L EA+ +DG+ Sbjct: 557 GYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK----------- 604 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369 H Q +T + DP+ I +R + Sbjct: 605 --------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV 644 Query: 370 ASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKD 427 L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT + Sbjct: 645 PEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPN 704 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y +A+ G++ ++T E + +N+ Sbjct: 705 DRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM----- 754 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 E + + R + + +TI +RR +P Sbjct: 755 ----------------ETIVREAR-------------DKGYVETI-------YHRRRSLP 778 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + R+ R+ R+ +N+ +Q + Sbjct: 779 DI--------------NSRNFNIRNF-AERTAINSP------------------IQGSAA 805 Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660 DIL M+N +A ++L VHDEIV E P+ + L M + A Sbjct: 806 DILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA-- 863 Query: 661 LPLKAE 666 +PL A+ Sbjct: 864 VPLVAD 869 >gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] Length = 878 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 94/578 (16%), Positives = 172/578 (29%), Gaps = 133/578 (23%) Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L K+ Q + + L + L D ++ N E + Sbjct: 403 LYKCCLCRKVKVQGIVDDVALAGYVADPGHSSYSLEDLSRRNLPGVLATPCENLLQLASK 462 Query: 168 TREI---FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 R + ++L+ E L + + G D L LN+ + KL+ + Sbjct: 463 LRSLLAEQQQLKLYEEFELPLAPVLAQMEFAGITPDKELLLQLNEDMGHRIAKLEALAQE 522 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281 G + + ++L LF L + T+T +VL + + P + +R Sbjct: 523 QA-GEEFNLKSPKQLGVILFERLQLPVIKKTKTGYSTDAKVLEALEGKHPLIATILEHRK 581 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A + P P+ R H Q Sbjct: 582 LA-------------------------------KLQSTYLEGLQPLINPKTGRIHTHFQQ 610 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGE 395 +T ++DP+ I S +R + G L+ D + +E R+LA +A + Sbjct: 611 TVTVTGRLSSTDPNLQNIPARTEESRQIRRIFVPGAGYDLLMSCDYSQVELRILACIAQD 670 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF G+D++ T A F V +VT R+ K + + Y +A Sbjct: 671 ELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRSRAKAVNFGIVYGISDF---GLAKQL 727 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + A + + Sbjct: 728 DVGRKEAAGYIASYF--------------------------------------------E 743 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVG 574 R + + + + E G RR LP RS + Sbjct: 744 RYTGVKKYMEDIVAEAREQGYVSTLMGRRRY---------------LPEIRSSNFNLRSF 788 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 R+ +NT +Q + DI+ + M+ + I+L V Sbjct: 789 AERTAINTP------------------IQGTAADIMKKAMIAVQRELDKAQCKSRILLQV 830 Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E + ++ + L + + +PL A+ Sbjct: 831 HDELVLEVTEDEKEQVAQLVRTAMEGAA-SLDIPLLAD 867 >gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066] gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066] Length = 879 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 110/670 (16%), Positives = 212/670 (31%), Gaps = 157/670 (23%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + +++ ++ +A + V I F+R+ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 VL + +D+P LA+ + +L + E E++ Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192 + R P + K + ++L L E L + + Sbjct: 430 YGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKM 489 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + KL Q++ + G + ++L LF + GL LE Sbjct: 490 EMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548 Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T + ++L P A V L++ Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 ++ L + H Q +T + DP+ I +R Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + S + L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T + + + Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 +N A ++ T +R Sbjct: 751 AYMDNVVREAKNKGYVSTLF-------------------------------------HRR 773 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R++P + + R+ R+ R+ +N+ +Q Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800 Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656 + DIL M+N KA GY ++L VHDEI+ E P + L M + Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEAAVE 860 Query: 657 WAKGLPLKAE 666 A +PL A+ Sbjct: 861 LA--VPLIAD 868 >gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] Length = 933 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 82/562 (14%), Positives = 155/562 (27%), Gaps = 83/562 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LE+ + + N ++ + PI + +G Sbjct: 409 DLLKPMLEDPAILKIGQNMKYDAKIFARYGVAVAPIDDTMLLSY--AMHGGLHGHGMDTL 466 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + S K L+ T + + A Y D +T +++ Sbjct: 467 SERYLSHTPIPIKPLLGSGKSAITFDKV----------AIDEATAYAAEDADITLRLWQL 516 Query: 175 LEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +P + E+ L + + G VD + ++ + L+ E+ Sbjct: 517 FKPQLHRAQVTTVYETLERPLVPVLAEMEMHGVKVDREVLSRMSNAFAQKMAGLEAEIHE 576 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 L G + ++ LF + L + +T VL ++ + R Sbjct: 577 LA-GEPFNVGSPAQVGEILFDKMSLEGGKKGKTGKYSTPADVLEDLATEHELPARILDWR 635 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ P R H Sbjct: 636 QL-------------------------------SKLKSTYTDALQTHINPDTGRVHTSYS 664 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + ++DP+ I +R +A G L+ D + IE R+LA +A Sbjct: 665 ITGANTGRLASTDPNLQNIPVRTEEGRRIREAFVAEPGNVLLSLDYSQIELRILAHIADI 724 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G D++ T + F+V Q+T + R K + + Y +A Sbjct: 725 PALKQAFADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINFGVIYGISGF---GLARNL 781 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + E + + EH G + + H+ Sbjct: 782 RIPRAEAQEFID--RYFERFPGIRTYMDDTIAFAKEHGFVQTLFGRRIHTPEINAKGPHA 839 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + +A G A +R V + +D LP+ L D Sbjct: 840 GFA------RRAAINAPIQGTAADVIRRAMVRMPDAIRD-------LPAKMLLQVHDELL 886 Query: 576 NRSYLNT--TTRQLTREYTYGG 595 T R+ G Sbjct: 887 FEVAEEAVEDTIAAARDIMEGA 908 >gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319] gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319] Length = 875 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 94/623 (15%), Positives = 187/623 (30%), Gaps = 135/623 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 LE+ V N RT++ + I +++A P+ A + KL Sbjct: 360 LEDGRVKKTVFNGK--RTIVSLKWA-GHEIKGIEHDVMIASYILNPAEANDDLATIAKLK 416 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + E + + KG H Y K + ++ E Sbjct: 417 GYHQVQSDEAV--YGKGAKRSIAEADQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFE 474 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + +G +D A + + + + K++ ++ G + ++L Sbjct: 475 KLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYA-GQEFNINSPKQL 533 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL ++ R + + L + Sbjct: 534 GVVLFEKMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQL-GKLQSTYIEGLKK 592 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ + H +Q +T + DP+ Sbjct: 593 VIHESD------------------------------GKVHTRFNQTLTQTGRLSSVDPNL 622 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + S G + AD + IE RVLA +A ++ + AF+ D++ Sbjct: 623 QNIPIRLEEGKKIRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHT 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+V +VT + R K + + Y + + G+ A + Sbjct: 683 KTAMDVFHVEREEVTANMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKAAATFI---- 735 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + + + + A E ++ T R R+ ++ Sbjct: 736 --ERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHR-----RRYLPEITS----------- 777 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 R+ R R+ +NT Sbjct: 778 -----------------------------------RNFNLRSF-AERTAMNTP------- 794 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 795 -----------IQGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKIL 843 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 844 EKIVPEVMENALE--LEVPLKVD 864 >gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] Length = 875 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 ++ T V +++ + + + I ++LA PS A++ Sbjct: 363 SEQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVAD----LEENEQLALMED 475 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 476 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864 >gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis] Length = 932 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 81/504 (16%), Positives = 156/504 (30%), Gaps = 131/504 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G V+ + + ++ + KL E+ L G + ++ Sbjct: 526 DVELPLAPILGSMEWIGIKVNPKVLQDMAGELNSDIQKLQAEIHELA-GETFNINSTQQF 584 Query: 240 KTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + GL + T+T VL P +V R Sbjct: 585 GKILFEKLGLPVIKRTKTGYSTDVEVLEELSDRHPIVPKVLEFRQLM------------- 631 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + P R H +Q +T +++P+ Sbjct: 632 ------------------KLKSTYVEGLLPLIDGPEGRIHTSFNQSVTATGRLSSTEPNL 673 Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R IA E G L+ AD + IE R+LA ++ + AF +D++ Sbjct: 674 QNIPVRLEQGRHIRKAFIAPEPGWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHT 733 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F+V VT++ R K + + Y ++ G+ ++ Sbjct: 734 RTASEVFDVPMGNVTREMRRRAKAVNFGIVYGISDF---GLSRDLGVTRGEAKEYIEGY- 789 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +R+ H + + + + Sbjct: 790 ---------------------------------------FRRYH----GVRGYIDRIIAE 806 Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + G + +RR +P +++K R R+ +NT Sbjct: 807 ARQQGFVTTLLGRRRRLPDLFVKNK---------------IRQNFGERTAMNTP------ 845 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+ KA D ++L VHDE++ E P+ + Sbjct: 846 ------------IQGTAADIIKAAMVKIPKALKDHGLKTRMLLQVHDELIFEVPEEELTV 893 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 A ++ +M +PL + Sbjct: 894 VAPLIKRIMEKTIE--ISVPLTVD 915 >gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] Length = 908 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 106/693 (15%), Positives = 217/693 (31%), Gaps = 166/693 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57 + ID ET S + Y +I + F + + ++ Sbjct: 341 KYISIDTETSS--------LDIY--TARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 390 Query: 58 KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 ++ L ++ I+ N F+ +LK IP + T++ A S + A Sbjct: 391 QKFNNLFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF--- 172 K K + +++I +N + + Y D +T +F Sbjct: 449 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIF 495 Query: 173 -KRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 K+L+ + E + + + G +D + + E ++ E+ Sbjct: 496 TKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEIIK- 554 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G+ + +++ LF + L L + + T +VL S + +R A Sbjct: 555 SIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHRQIA 614 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L+E +N + +R H Q Sbjct: 615 KLKSTYT-DNLIELINH------------------------------KTNRLHTSFIQTK 643 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T + +P+ I +R G + AD + IE +LA ++ ++ Sbjct: 644 TATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +KAFE +D++ T ++ F + ++T D R I K + + Y+ ++A G+ Sbjct: 704 IKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDF---RLAKELGIT 760 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 E+A+ F +++ ++ Sbjct: 761 ----------------KEEAKGFINSYFDSY-------------------------PKIK 779 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + ++ S L R + Sbjct: 780 EF------------------------ITNQINFVRNTGY------SETILKRRRYIKEIN 809 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 N R +I+Q + DI+ M+ K I+L VHDE+ Sbjct: 810 SNNYLERSAAERIA-----INSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEM 864 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + E+P ++ + +M ++ LPL+A Sbjct: 865 LIESPIKEKNEVEKILKIMMET-AYTLNLPLRA 896 >gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63] gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] Length = 882 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 107/648 (16%), Positives = 210/648 (32%), Gaps = 150/648 (23%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +I D + D L N ++ +N + LK +I Sbjct: 337 IIYIFISVDGEKIYYVDSNEVSK----LDSIFSNNEIKKYGYNLKDDYISLKPY---NIN 389 Query: 90 IHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 + + ++ ++ A+K S+K++ +EL+ + K + +E L + Sbjct: 390 LENMYFDITISEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFED 449 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVD 200 + + E + L +S E L + + G VD Sbjct: 450 LAEYMGQIICTVKE----TVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVD 503 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 ++ L+ L++E+ L+ G + ++L LF + L + T+T Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELS-GEPFNINSPKQLGVILFEKLELPIIKKTKTGYS 562 Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 VL + P ++ R + + L+ +N Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQ-IVKLNSTYVEGLLNIIN------------------ 603 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE 372 P +R H +Q IT +++P+ I +R IA + Sbjct: 604 ------------PESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADD 651 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 KLV AD + +E RVLA M+ ++ ++AF+ ED++ T ++ FNV VT + R Sbjct: 652 NCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA 711 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y +A + + +++ Sbjct: 712 KAVNFGIIYGKSDF---GLADDLNIPVPKAKEYIES------------------------ 744 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551 + K+ ++ E + E+ E+G A+ I +RR +P + Sbjct: 745 -----------------YFAKYHKIKEF---MDTTVEKASEDGYAVTILNRRRYIPEI-- 782 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 K N + R +N +Q + DI+ Sbjct: 783 -KSSNFMERN------------RGKRFAMNAP------------------IQGSAADIIK 811 Query: 612 EGMMNATKAGYD------IVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 M+N K + ++L VHDE++ E D + ++ M Sbjct: 812 IAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEME 859 >gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] Length = 882 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 105/662 (15%), Positives = 193/662 (29%), Gaps = 155/662 (23%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKAC 83 AE+ + F + + M + L EAL + V A F+ Sbjct: 345 AENAEIGGIGISFGKEKIYCIPAGNGYSM-EELLEALVH--VAKHAGRFVVFDLKSSLPY 401 Query: 84 F-NLDIPIHRWICTLVLARSNGLPS----ALKAVG-EALKLSSQKMEEGKELIARFCKGE 137 L+ ++A P + V E L L E ++++ Sbjct: 402 LKGLEGAAEEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLMIDPKTELEKMVCYEAYAA 461 Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197 K E W+LF E E L + + G Sbjct: 462 FASSEVLEEKLKKEEMWKLFTEI---------------------EMPLVFTLFHMEQNGV 500 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 V+ + + + + +L++E+ L G + ++L LF L T+T Sbjct: 501 RVEAEELKSYGEQLGGKIVQLEKEIYELA-GEEFNINSPKQLGVVLFEHLSLPNGKKTKT 559 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 KL P V L++ ++ Sbjct: 560 GYSTAADVLDKLAPDYPIVAK----------------------------ILEYRQLAKLK 591 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE 372 R H + +Q +T +++P+ I + +R + E Sbjct: 592 STYADGLAVFIHEDDHRIHGKFNQTVTATGRISSTEPNLQNIPARVELGRLIRKVFVPEE 651 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G V AD + IE RVLA +G+ ++A+ +D++ T ++ F+ +VT QR Sbjct: 652 GYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTDLQRRNA 711 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + + + A + Sbjct: 712 KAVNFGIVYGISSFGLSQ---DLSITRKEAAEYIDRYF---------------------- 746 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYM 551 + + + + L A E G + + +RR VP + Sbjct: 747 -------------------ETYPGIKKF---LDDAVAHAKEQGYVVTLFGRRRPVPEL-- 782 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 S + + R G R +N+ +Q + DI+ Sbjct: 783 ------------SSSNFMQRQFGE-RVAMNSP------------------IQGTAADIMK 811 Query: 612 EGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664 M+ K +VL VHDE++ ET +E +L M +PL+ Sbjct: 812 IAMIAVDKELRMRNMKSRLVLQVHDELLIETWKEEEEEVREILKEGMMHAAD--LSVPLE 869 Query: 665 AE 666 + Sbjct: 870 ID 871 >gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 866 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 92/534 (17%), Positives = 160/534 (29%), Gaps = 133/534 (24%) Query: 153 AWRLFGEYCKGDVTVTR-EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 AW V R E + L + E L + + G VD H ++ + Sbjct: 435 AWCAVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREI 494 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC------QRVLSS 265 + L E+ L G + ++L LF L T+ T VL + Sbjct: 495 SAQIAHLTAEIYDLAKG-EFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEA 553 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P ++ + R ++ Sbjct: 554 MRFDHPILEKILSYRF-------------------------------WTKLQSTYLDSME 582 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVA 379 PR R H +Q +T +S+P+ I +R+ S+G L+ A Sbjct: 583 GLISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPSDGYDALMSA 642 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++ ++ L+AF G+D++ T + F V VT D R K + + Sbjct: 643 DYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGI 702 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y ++ ++ A + + A + + + E A +D F+ Sbjct: 703 VYGISDY---GLSKDLHISRQEAADYIASYFAKC------SGIKRFIDGVVEKAHKDGFV 753 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T R Sbjct: 754 TTIFGR-----------------------------------------------------R 760 Query: 560 LMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 LP+ +S Y R +NT +Q + DI+ M+ Sbjct: 761 RDLPAIKSSNYNQRTLAERMAMNTP------------------IQGSAADIIKLAMIKTH 802 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 +A I+L VHDE+V E ++ + L N +PL + Sbjct: 803 RALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVRDAMENIV-QLSVPLSVD 855 >gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 867 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 92/534 (17%), Positives = 160/534 (29%), Gaps = 133/534 (24%) Query: 153 AWRLFGEYCKGDVTVTR-EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 AW V R E + L + E L + + G VD H ++ + Sbjct: 436 AWCAVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREI 495 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC------QRVLSS 265 + L E+ L G + ++L LF L T+ T VL + Sbjct: 496 SAQIAHLTAEIYDLAKG-EFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEA 554 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P ++ + R ++ Sbjct: 555 MRFDHPILEKILSYRF-------------------------------WTKLQSTYLDSME 583 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVA 379 PR R H +Q +T +S+P+ I +R+ S+G L+ A Sbjct: 584 GLISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPSDGYDALMSA 643 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE R+LA ++ ++ L+AF G+D++ T + F V VT D R K + + Sbjct: 644 DYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGI 703 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y ++ ++ A + + A + + + E A +D F+ Sbjct: 704 VYGISDY---GLSKDLHISRQEAADYIASYFAKC------SGIKRFIDGVVEKAHKDGFV 754 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T R Sbjct: 755 TTIFGR-----------------------------------------------------R 761 Query: 560 LMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 LP+ +S Y R +NT +Q + DI+ M+ Sbjct: 762 RDLPAIKSSNYNQRTLAERMAMNTP------------------IQGSAADIIKLAMIKTH 803 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 +A I+L VHDE+V E ++ + L N +PL + Sbjct: 804 RALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVRDAMENIV-QLSVPLSVD 856 >gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1] Length = 832 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 95/512 (18%), Positives = 166/512 (32%), Gaps = 79/512 (15%) Query: 90 IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG--ETHECLYD 144 + L + G ++ A+ E L L L+A T E + Sbjct: 336 PEPYKALRDLKEARGFLAKDLSVLALREGLGLPPGDDPM---LLAYLLDPSNTTPEGVAR 392 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-----------DQTIN 193 R + W E T++ +F L E+ L +L + Sbjct: 393 R----YGGEW---TEEAGERATLSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHME 445 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +DVA L+ V E +L+ E+ L G + ++L+ LF E GL Sbjct: 446 ATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHSFNLNSRDQLERVLFDELGLPAIG 504 Query: 254 LTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 TE T +R VL + ++ P ++ Sbjct: 505 KTEKTGKRSTSAAVLEALREAHPIVEKIL------------------------------- 533 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDC 363 Q+ ++ P PR R H +Q T +SDP+ I + Sbjct: 534 QYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQR 593 Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 +R IA EG LV D + IE RVLA ++G++ ++ F+ G D++ T + F V Sbjct: 594 IRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREA 653 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V R K + + Y A +++ + + + + R Sbjct: 654 VDPLMRRAAKTINFGVLYGMSA---HRLSQELAIPYEEAQAFI------GRYFQSFPKVR 704 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 E E ++ T R ++ +RV + + G A K Sbjct: 705 AWIEKTLEEGRRRGYVETLFGR-RRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKL 763 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V ++ + ++ ++L LV Sbjct: 764 AMVK-LFPRLEEMGARMLLQVHDELVLEAPKE 794 >gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] Length = 880 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 117/668 (17%), Positives = 214/668 (32%), Gaps = 165/668 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85 ++ A+G D + + D + P+ + L K AL+ D+ VL + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLAKTALKTYDLKRT--------KVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144 +++P LA+ + +L Q + E+ + K Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436 Query: 145 RNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYC 198 R P + + + + +L+ L EQ L ++ + G Sbjct: 437 RALPEQEQLFEHLARKVQVLLETEEPMKDQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIK 496 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256 V+ + + L QE+ L G + ++L T LF + GL LE T+ Sbjct: 497 VERETLQGMQVENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLSLEYTKKTK 555 Query: 257 TTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 556 TGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 H Q +T + DP+ I +R Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643 Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTP 703 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A+ G++ ++T Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF---------------- 744 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRD 545 R + N + + + G I +RR Sbjct: 745 ----------------------------ERFPGIKNYMETIVREARDKGYVETIYHRRRS 776 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 +P + + R+ R+ R+ +N+ +Q Sbjct: 777 LPDI--------------NSRNFNIRNF-AERTAINSP------------------IQGS 803 Query: 606 SRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA 658 + DIL M+N +A ++L VHDEIV E P+ + L M + A Sbjct: 804 AADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA 863 Query: 659 KGLPLKAE 666 +PL A+ Sbjct: 864 --VPLVAD 869 >gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] Length = 884 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 113/679 (16%), Positives = 207/679 (30%), Gaps = 146/679 (21%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 G + D+ ++FA D + ++ L + + H+ + Sbjct: 327 ETHGDNPHHADIVGLIFA-ATGQQFFMTLDVLQSDAATP-IRAWLADPERKKRGHDLH-- 382 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIAR 132 RT L ++ I + LA P L + LSS + +E Sbjct: 383 RTDLALHWH-GIEFAGAEFDVQLAGYLLDPTDANQTLSGLAAKYGLSSIRPDE-----EV 436 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCK--GDVTVTR-EIFKRLEPLSSKEQELWYLD 189 F KG ++ +H E + + E+ K L E L + Sbjct: 437 FGKGAKYKVPDVDVLSDHVARKAAVIEALVPVQQAELEKTEMHKLFHEL---EMPLSRIL 493 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + +G V+V L + + + L E+ S+ G+ + ++L LF + GL Sbjct: 494 ADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSIA-GVEFNLNSPKQLGEILFDKLGL 552 Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 + T+T +KL P ++ LQ Sbjct: 553 PVIKKTKTGYSTDAEVLEKLAPY----------------------------HDIVQNILQ 584 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364 + ++ + + + H Q + + P+ I + Sbjct: 585 YRTIAKLQSTYVEGLLKEISGKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRKI 644 Query: 365 RSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 R + SE G ++ AD + IE RVLA ++ ++ +AF D++ T + F VA Sbjct: 645 RKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVFGVAAED 704 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 V + R K + + Y + + A + ++ D R Sbjct: 705 VDSNMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAARFID------QYFDVFQGVR 755 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 ++ + A D ++ K ++ R+R Sbjct: 756 RYMDDIVKDAKRDGYV------------------------------------KTLLERRR 779 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 LP + + R+ +NT + Sbjct: 780 Y-----------------LPEINASNFNLRSFAERTAMNTP------------------I 804 Query: 603 QAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 Q + DI+ M+ K ++L VHDE+V E P + L M + Sbjct: 805 QGTAADIIKLAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAAL 864 Query: 656 SWAKGLPLKAE-GYESKRY 673 A +PLKAE Y S Y Sbjct: 865 ELA--VPLKAEVSYGSNWY 881 >gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803] gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803] Length = 891 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L N ++ ++ R ++ +N I I L++A P+ Sbjct: 370 DAFKEWLANGEMRKHTFDAK--RAIVALKWN-GIDIQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FIEELEKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D + H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SCKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311] gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG 18311] Length = 879 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 110/670 (16%), Positives = 212/670 (31%), Gaps = 157/670 (23%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + +++ ++ +A + V I F+R+ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 VL + +D+P LA+ + +L + E E++ Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192 + R P + K + ++L L E L + + Sbjct: 430 YGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKM 489 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + KL Q++ + G + ++L LF + GL LE Sbjct: 490 EMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548 Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T + ++L P A V L++ Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 ++ L + H Q +T + DP+ I +R Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + S + L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T + + + Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 +N A + ++ T +R Sbjct: 751 AYMDNVVREAKDKGYVSTLF-------------------------------------HRR 773 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R++P + + R+ R+ R+ +N+ +Q Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800 Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656 + DIL M+N KA GY ++L VHDEI+ E P + L M Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEDAVE 860 Query: 657 WAKGLPLKAE 666 A +PL A+ Sbjct: 861 LA--VPLIAD 868 >gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23] gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23] Length = 875 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 ++ T V +++ + + + I ++LA PS A++ Sbjct: 363 SEQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVAD----LEENEQLALMED 475 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 476 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEAFNINSPKQLG 534 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864 >gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] Length = 877 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 431 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 490 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + +V +L QE+ L G + ++L LF + GL LE Sbjct: 491 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + DG++ Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 602 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 698 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 798 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAI 857 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 858 Q--LSVPLIAD 866 >gi|332364956|gb|EGJ42724.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK355] Length = 880 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 116/677 (17%), Positives = 218/677 (32%), Gaps = 171/677 (25%) Query: 28 VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYF 75 ++ + + + D V D + P+ + L K AL+ D+ Sbjct: 326 FEILGDNYHKEEIVSLAWGDSRQIYVGTSDLLQQPLFQEFLTKTALKTYDLKRT------ 379 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFC 134 VL + + +++P LA+ + +L Q + E+ + Sbjct: 380 --KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGA 435 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYL 188 K R P + + + +L L EQ L ++ Sbjct: 436 K---------RALPEQERLFEHLARKVQVLLETEEPMLEQLRAHDQLNLLLEMEQPLAFV 486 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V+ + + L QE+ L G + ++L T LF + G Sbjct: 487 LAKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMG 545 Query: 249 LHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 L LE T+T VL + P ++ R S+ + L EA+ +D + Sbjct: 546 LPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADSK 604 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 + H Q +T + DP+ I Sbjct: 605 I-------------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRL 633 Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F Sbjct: 634 EQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVF 693 Query: 418 NVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 + VT + R K + + Y +A+ G++ ++T E + Sbjct: 694 GIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFP 748 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +N+ E + + R + + +TI Sbjct: 749 GIKNYM---------------------ETIVREAR-------------DKGYVETI---- 770 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 +RR +P + + R+ R+ R+ +N+ Sbjct: 771 ---YHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799 Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYH 649 +Q + DIL M+N +A ++L VHDEIV E P+ + ++ Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKA 854 Query: 650 LMTSNPSWAKGLPLKAE 666 M + A +PL A+ Sbjct: 855 TMEAAIELA--VPLVAD 869 >gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03] Length = 879 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 112/670 (16%), Positives = 213/670 (31%), Gaps = 157/670 (23%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + +++ ++ +A + V I F+R+ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 VL + +D+P LA+ + +L + E E++ Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192 + R P + K + ++L L E L + + Sbjct: 430 YGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKM 489 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + KL Q++ + G + ++L LF + GL LE Sbjct: 490 EMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548 Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T + ++L P A V L++ Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 ++ L + H Q +T + DP+ I +R Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + S + L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T + + + Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 +N A + ++ T +R Sbjct: 751 AYMDNVVREAKDKGYVSTLF-------------------------------------HRR 773 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R++P + + R+ R+ R+ +N+ +Q Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800 Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656 + DIL M+N KA GY ++L VHDEIV E P + L M S Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPSDELLAMKALVKETMESAVE 860 Query: 657 WAKGLPLKAE 666 A +PL A+ Sbjct: 861 LA--VPLIAD 868 >gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99] Length = 885 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 ++ T V +++ + + + I ++LA PS A++ Sbjct: 373 SEQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 429 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 430 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVAD----LEENEQLALMED 485 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 486 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEAFNINSPKQLG 544 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 545 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 589 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 590 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 633 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 634 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 693 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 694 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 750 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 751 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 787 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 788 ----------------------------------RNFNVRGF-AERTAMNTP-------- 804 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 805 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 854 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 855 EIVPDVMENAVE--LSVPLKVD 874 >gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] Length = 889 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 120/664 (18%), Positives = 204/664 (30%), Gaps = 164/664 (24%) Query: 33 FAFGFDDH--PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIP 89 FA+ D + + + DP +LKE LE T + + + +L NL P Sbjct: 349 FAWSCGDKLYATDKLELLQDP----ILKEFLEKTSLKVYDFKKA--KVLLNRLGLNLQAP 402 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC-LYDRNKP 148 LA+ + L Q ET + P Sbjct: 403 ----AFDSRLAKYLLSTVENNEISTIANLYGQT---------YLADDETFYGKGVKKAIP 449 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + V + ++L L EQ L ++ + G V Sbjct: 450 EREKFLEHLARKVAVLVETEPVLLEKLGEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKE 509 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQ 260 + ++ KL QE+ L G + ++L LF + GL LE T+T Sbjct: 510 TLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTGYS 568 Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 VL + P ++ + R A + + L + + DG++ Sbjct: 569 TAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VVGLQDWILDDGKI------------- 614 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS- 371 H Q +T + DP+ I +R + Sbjct: 615 ------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEW 656 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y +++ G++ + T Sbjct: 717 NAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF-------------------- 753 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 R + N + + + + G KRR Sbjct: 754 ------------------------ERFPGIKNYMDEVVREARDKGYVETLFKRR------ 783 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 LP S + G R+ +N+ +Q + DI Sbjct: 784 ---------RELPDINSRNFNIRGFAERTAINSP------------------IQGSAADI 816 Query: 610 LAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLP 662 L M+ KA GY ++L VHDEIV E P ++ +L M +P Sbjct: 817 LKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEAIQ--LSVP 874 Query: 663 LKAE 666 L A+ Sbjct: 875 LIAD 878 >gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] Length = 876 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 105/664 (15%), Positives = 202/664 (30%), Gaps = 147/664 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F + + D + L + LE+ + T + +++ + V Sbjct: 328 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++I ++LA P ++ V + L Q K+ I F KG+ H Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 439 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + H VT T E + ++E L E L + + + G Sbjct: 440 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 D+ + + + L + + G + ++L LF L + T+T Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554 Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 VL + P + R A + Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 583 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 + + R H +Q + + DP+ I +R Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 642 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 S+ ++ AD + IE RVLA + ++ AF G D++ T + FNV QV R Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + + G+ + ++ + + + Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 753 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A ++ T +RR +P + Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R++ R R+ +NT +Q + DI Sbjct: 777 TS--------------RNVNLRSF-AERTAMNTP------------------IQGSAADI 803 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662 + M+ TK ++L VHDE++ E P ++ E + + +M +P Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861 Query: 663 LKAE 666 LK + Sbjct: 862 LKVD 865 >gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000] gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000] Length = 982 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 95/567 (16%), Positives = 176/567 (31%), Gaps = 80/567 (14%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 + E + F D + L D + LK LE+ V VA N+ ++ VL Sbjct: 430 HCEKADGLAFEAPADIEQIPLADVIA------TLKPLLEDPAVLKVAQNAKYDIAVLARH 483 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 PI + + + + + E K K++ KG+ Sbjct: 484 GIQVAPIEDTMLISYVLEAGLHGHGMDELSELH--LGHKPIPFKQVAGSG-KGQIS---- 536 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIN 193 A Y D VT ++ L+P ++ E+ + + + Sbjct: 537 -----FKHVALPEATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMME 591 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 + G VD L+ + + + + L G + +++ LF E + Sbjct: 592 NNGVRVDPEALRLLSNEFSLRMAQFEARAQEL-VGRPFNLGSPKQIGDVLFGEMQMKGGK 650 Query: 254 LTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T T T VL S + +V + + S+ L+ A+ Sbjct: 651 KTATGQWSTDSDVLESLALEH-ELPRVLLDWRQLSKLKGTYTENLIAAIA---------- 699 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364 P R H T +SDP+ I + Sbjct: 700 --------------------PSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKI 739 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R +A+ G L+ AD + IE R+LA + KAF+ G D++ T + F+ + Sbjct: 740 RKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGM 799 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 R K + + Y A +A+ G++ +KT E + + + Sbjct: 800 DPMIRRRAKAINFGIVYGISAF---GLANQLGISQGEAGAYIKT--YFERFPGIQAYMDA 854 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + EH G K ++ + +A G A +R Sbjct: 855 TKAFVREHGYVTTIFGR-----KINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRA 909 Query: 545 DVPLVYMKKDKN-NLILMLPSGRSLVY 570 + + + + ++L LV+ Sbjct: 910 MIRMPVALEAAGLSTRMLLQVHDELVF 936 >gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437] Length = 881 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 106/638 (16%), Positives = 190/638 (29%), Gaps = 165/638 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA----- 115 L + D T V ++ LK L+ W L N S + Sbjct: 366 LRDPDRTKVCYDVKATEVALKHQ-GLETDGFAWDILLSSYLINASESGHELSEIVDRKWG 424 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L GK R +P +E R I RL Sbjct: 425 GGLPDDDAVYGK--------------GVKRRRPEGKELAEHLARKA-------RAIH-RL 462 Query: 176 EPLSSKEQ--------------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +PL +E L + + +G VD +L + + +L ++ Sbjct: 463 QPLLEEELKENGLDSLYLDLELPLARVLAKMEWQGVQVDRDRLQSLGEELKGRLEELTEK 522 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + L G + ++L LF + GL + T+T +KL PQ V Sbjct: 523 IFELA-GTEFNINSPKQLGEILFDKLGLPVLKKTKTGYSTSADVLEKLAPQHEIVEE--- 578 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 L + + + + H +Q Sbjct: 579 -------------------------ILHYRQVGKLISTYVEGLLKEIDGETGKIHTRFNQ 613 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGE 395 I ++DP+ I +R + SE ++ AD + IE RVLA ++G+ Sbjct: 614 AIAATGRLSSTDPNLQNIPIRLEEGRRIRQVFVPSEEEWLMLSADYSQIELRVLAHLSGD 673 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V+ +VT R K + + Y + Sbjct: 674 ENLIEAFQKELDVHTKTAMDVFGVSADEVTPWMRRHAKAVNFGIVYGISDYGLSQ---NL 730 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + A ++ + D+ + E+ A D ++ T Sbjct: 731 NIPRKEAAEFIQ------RYFDSYPGVKRYMEDIVRQAKADGYVTTML------------ 772 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +RR++P + + R+ R Sbjct: 773 -------------------------HRRRELPEI--------------NSRNFNRRSF-A 792 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629 R+ +NT +Q + DI+ + M+ ++L VH Sbjct: 793 ERTAMNTP------------------IQGTAADIIKKAMVEMDSVLEKEGLRARLLLQVH 834 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ ETP + L +M S A +PL+ + Sbjct: 835 DELIFETPAEEMEALDNLVRRVMESAVELA--VPLQVD 870 >gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] Length = 871 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 89/545 (16%), Positives = 163/545 (29%), Gaps = 72/545 (13%) Query: 35 FGFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 F + V +++ DP + L+ LEN ++ + HN F VLK Sbjct: 341 FVANGEDVYVFEMEQDPRAALEKLRAFLENEEIGKLVHNGKFIEVVLKRY--------GL 392 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 V + L L LS E++ + E Sbjct: 393 KFDGVRGDTLLLSYVLDPGFSGETLSEHLFHYLGEVVDEKMDPGLAVRGLKKLHQVLEEK 452 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 V E L + + G VD + ++Q + + Sbjct: 453 LGSQDLVNLYKVV---------------ELPLSPVLADMEFTGIKVDPRILAEISQELAL 497 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 + + + G + +L LF + GL T+T ++L Sbjct: 498 RIAEDQARIYQVA-GQEFNINSTRQLGKVLFEDLGLPPVKKTKTGYSTSAEVLEELY--- 553 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 S + +++ ++ FP P Sbjct: 554 -------------------------GSHEIIEHIVEYRTLAKLKSTYVDTFPGYIHPETG 588 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387 R H Q +T + +P+ I +R + E L+ D + I+ R Sbjct: 589 RVHTVFKQAVTATGRLSSVEPNLQNIPIRMEEGRRIRKAFVPGDENHILLSCDYSQIDLR 648 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 LA M+G++ ++ F G D++ T + F V QVT D R K + + Y Sbjct: 649 SLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNFGIVYGISDF- 707 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 +A TG+ + E + D+ R + E ++ T R + Sbjct: 708 --GLARGTGVTREEAKAYI------ERYLDSYPGVRRYMQEVVAMGREKGYVSTVLGR-R 758 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSG 565 + S + + + G + K + VY + + NL ++L Sbjct: 759 RYLPDLLSSNRTVRSMAERMALNAPIQGTSADIIKLAMLS-VYRELKRRNLRSRMLLQVH 817 Query: 566 RSLVY 570 LV+ Sbjct: 818 DDLVF 822 >gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] Length = 937 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 114/686 (16%), Positives = 218/686 (31%), Gaps = 164/686 (23%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVA 70 D G+ +++ +F ++ D + Q L + N+++ +A Sbjct: 371 DTETDGLNP--LTASIVVASFAPEEGEAYYLPLPQDFDEACAILQPLDALMRNSEILKMA 428 Query: 71 HNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 N+ F++ +L + P+ + L L + E G Sbjct: 429 QNAKFDQKLLARYGVSSATPLFDTLVAHYLIAP-DQRHNLDTLAEQY--------LGYRT 479 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL---W 186 IA E R+ L +Y D V R ++ L +EQ+ W Sbjct: 480 IAYSDLSEKKNFDLRRDVAE-----ELLVDYAAEDADVVRRLYPLLREKLEQEQQEKLFW 534 Query: 187 YLD-------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 ++ + + G +DV H +++ + + + + + G + +++ Sbjct: 535 EVEMPLVGVLERMEREGVQLDVQRLHEVSEKLTNDLRETEDAIFHWA-GHSFNVSSPKQV 593 Query: 240 KTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 LF E GLH + T+T T + VLS P ++ Sbjct: 594 GVVLFEELGLHAKGKKTKTNTYSTSEEVLSKCVDQHPIVQKIL----------------- 636 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + G + P P R +Q +T +SDP Sbjct: 637 --------------DYRGLKKLIGTYTEALPELVYP-DGRLRTSYNQAVTVTGRLSSSDP 681 Query: 355 DPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +RS + + + AD + IE R++A + ++ +KAF GED+ Sbjct: 682 NLQNIPIRSAMGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLIKAFVEGEDV 741 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +T AR +NVAP +VT QR+ K + Y A + ++ + + L+ + Sbjct: 742 HRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYGISAYGLSQ---RLNIDPSEASSLISS 798 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 EN+P + + + Sbjct: 799 ----------------YFENYP----------------------------AVRAYMDECV 814 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 ++ + G RR Y N+RS T RQ Sbjct: 815 QKARKLGYTETLLGRRR------------------------YLPDINSRSA---TVRQFA 847 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET--PDTD 640 +Q + D++ M+ +++ VHDE+ + P+ D Sbjct: 848 ERNA-----VNAPIQGTAADLIKVAMIRIDAKMRERNMKSRMIMQVHDELNFDAYLPEVD 902 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666 E A +++ M +PL+ E Sbjct: 903 ELRA-LVHQEMCQAIP-NLRVPLEVE 926 >gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] Length = 891 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 100/638 (15%), Positives = 205/638 (32%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + ++ ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + ++ E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQT 475 Query: 175 L----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLCNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + E+ + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058] Length = 880 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 117/667 (17%), Positives = 223/667 (33%), Gaps = 163/667 (24%) Query: 29 CVILFAFGFDDHPVELW--DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERTVLKACFN 85 ++ A+G D + + D + P+ + L K AL+ D+ VL + + Sbjct: 337 EIVGLAWG-DSRQIYVGSSDLLQQPLFQEFLTKTALKTYDLKRT--------KVLLSHYG 387 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYD 144 +++P LA+ + +L Q + E+ + K Sbjct: 388 IELPAAS--FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK--------- 436 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYC 198 R P + + + + + ++L L EQ L ++ + G Sbjct: 437 RALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIK 496 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE 256 V+ + + L QE+ L G + ++L T LF + GL LE T+ Sbjct: 497 VERETLQGMQAENEKTLESLTQEIYDLA-GQEFNINSPKQLGTILFEDMGLPLEYTKKTK 555 Query: 257 TTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T + ++L P ++ R S+ + L EA+ +DG+ Sbjct: 556 TGYSTAVDVLERLAPIASIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK---------- 604 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 H Q +T + DP+ I +R Sbjct: 605 ---------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 643 Query: 369 IASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F + VT Sbjct: 644 VPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTP 703 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A+ G++ ++T E + +N+ Sbjct: 704 NDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIQT--YFERFPGIKNYM---- 754 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 E + + R + + +TI +RR + Sbjct: 755 -----------------ETIVREAR-------------DKGYVETI-------YHRRRSL 777 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 P + + R+ R+ R+ +N+ +Q + Sbjct: 778 PDI--------------NSRNFNIRNF-AERTAINSP------------------IQGSA 804 Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAK 659 DIL M+N +A ++L VHDEIV E P+ + ++ M + A Sbjct: 805 ADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMEAAIELA- 863 Query: 660 GLPLKAE 666 +PL A+ Sbjct: 864 -VPLVAD 869 >gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15] gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15] Length = 967 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 95/567 (16%), Positives = 176/567 (31%), Gaps = 80/567 (14%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 + E + F D + L D + LK LE+ V VA N+ ++ VL Sbjct: 415 HCEKADGLAFEAPADIEQIPLADVIA------TLKPLLEDPAVLKVAQNAKYDIAVLARH 468 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 PI + + + + + E K K++ KG+ Sbjct: 469 GIQVAPIEDTMLISYVLEAGLHGHGMDELSELH--LGHKPIPFKQVAGSG-KGQIS---- 521 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIN 193 A Y D VT ++ L+P ++ E+ + + + Sbjct: 522 -----FKHVALPEATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMME 576 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 + G VD L+ + + + + L G + +++ LF E + Sbjct: 577 NNGVRVDPEALRLLSNEFSLRMAQFEARAQEL-VGRPFNLGSPKQIGDVLFGEMQMKGGK 635 Query: 254 LTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T T T VL S + +V + + S+ L+ A+ Sbjct: 636 KTATGQWSTDSDVLESLALEH-ELPRVLLDWRQLSKLKGTYTENLIAAIA---------- 684 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364 P R H T +SDP+ I + Sbjct: 685 --------------------PSTGRVHTSYALAATTTGRLSSSDPNLQNIPVRTEEGRKI 724 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R +A+ G L+ AD + IE R+LA + KAF+ G D++ T + F+ + Sbjct: 725 RKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGM 784 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 R K + + Y A +A+ G++ +KT E + + + Sbjct: 785 DPMIRRRAKAINFGIVYGISAF---GLANQLGISQGEAGAYIKT--YFERFPGIQAYMDA 839 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 + EH G K ++ + +A G A +R Sbjct: 840 TKAFVREHGYVTTIFGR-----KINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRRA 894 Query: 545 DVPLVYMKKDKN-NLILMLPSGRSLVY 570 + + + + ++L LV+ Sbjct: 895 MIRMPVALEAAGLSTRMLLQVHDELVF 921 >gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271] gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271] Length = 891 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 99/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L + + ++ R ++ +N I + L++A P+ Sbjct: 370 DAFKEWLADGAMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + + E+ V V Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + ++ E + E L + + +G VD + + + +++QE+ Sbjct: 476 FVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLEKLMDRHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 KGLVDAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T +R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLKR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPQEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363] Length = 877 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 106/655 (16%), Positives = 201/655 (30%), Gaps = 152/655 (23%) Query: 32 LFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + AF + + D + + P+ + +N R +L N++ Sbjct: 344 IVAFAWGNSEKIYVSKNLDLLTEMKFPENTYDFKKN-------------RVLLSH-LNIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 +P+ +LA+ + + +L E I F KG D Sbjct: 390 LPL--VKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI--FGKGTKLALPDDEIL 445 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +H K + ++ LS E L + + G V + Sbjct: 446 FDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEI 505 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLS 264 + + L +E+ L G + ++L LF + L + T+T VL Sbjct: 506 GAENEEKLASLTREIYDLA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLE 564 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 L+P ++ R + G + Sbjct: 565 DLAALSPVVAKILEYRQINKEQSTY-----------------------------VKGLIP 595 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379 + + H Q +T + DP+ I +R + S+ L+ + Sbjct: 596 Q---IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSS 652 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438 D + IE RVLA ++ ++ + AF+ G D++ +T R F + VT + R K + Sbjct: 653 DYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y +A G+ + ++T + + + EN A + F Sbjct: 713 VVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDKGF 763 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + T ++ +RR +P + Sbjct: 764 VET-------------------------------------MSHRRRKIPDI--------- 777 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R+ R R+ +N+ +Q + DIL M+N Sbjct: 778 -----NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMINLD 813 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 KA ++L VHDEI+ + P + + L M A +PLK + Sbjct: 814 KALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA--VPLKVD 866 >gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] Length = 875 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 102/660 (15%), Positives = 207/660 (31%), Gaps = 139/660 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F +D + P+++ LE+ H++ +K Sbjct: 327 YLKD-ELLKFGL-YDGEQYVVIPFDKVNEYPELVAW-LEDETTQKWVHDAKKTYIAMKRS 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 DI I + +LA P ++ V + Q ++ ++ + KG++ Sbjct: 384 ---DIAIENVVFDTMLASYIIDPSRTIEDVHSVMTHFDQTF--VQDDVSVYGKGKSFHIP 438 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 D H + + + E ++ LS E L + + G D+ Sbjct: 439 EDGVLDKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDID 498 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261 + ++ E +L +++ G + ++L LF + L + T+T Sbjct: 499 TLKEMETVIQTELDQLIEQIHEQA-GEKFNINSPKQLGVILFEKLELPVIKKTKTGYSTA 557 Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + P + R S+ + L + + DG Sbjct: 558 VDVLEKLQNAHPIIDNILTYRTL-SKLQSTYVEGLQKVIWDDG----------------- 599 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EG 373 R H +Q + + DP+ I +R ++ E Sbjct: 600 --------------RIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKSTHED 645 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 ++ AD + IE RVLA + G+ +AF ED++ TT + FNVA +VT R K Sbjct: 646 YVILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAK 705 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + + G+ + ++ + + +N + A Sbjct: 706 AVNFGIVYGISDYGLSQ---SLGITRKEAQRFID------DYLNHFPGVKDYMDNIVQDA 756 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + ++ T ++RR +P + + Sbjct: 757 KQQGYVETLL-------------------------------------KRRRYIPDITSRN 779 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R R+ +N+ +Q + DI+ Sbjct: 780 F---------NLRGFA------ERTAMNSP------------------IQGSAADIIKLA 806 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666 M+ + ++L VHDE++ E P + + +M +PL E Sbjct: 807 MVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVE 864 >gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14] gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14] Length = 1014 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 104/632 (16%), Positives = 189/632 (29%), Gaps = 132/632 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 +LK LE+ V N F +L I + +++ + A Sbjct: 486 DLLKPLLESGGHLKVGFNVKFTAVLLAQH---GIVMQNNDDVELISYALDAGRGAHDLEA 542 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + ELI ++ + Y +T +++ Sbjct: 543 LAQRWLDHTALNYGELIG---------SGRNK-LAFDQVTIDRATTYAAEYAALTLRLWQ 592 Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P E+ + + RG +D + L+ +L+ E++ Sbjct: 593 VLKPRLVAERMNSVYETLERPMIATLARMERRGITIDRQVLSRLSGEFAQTAARLEAEIQ 652 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 L G + +++ +F + GL T+T + + F Sbjct: 653 KLA-GEPINVGSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDDLAEQGHDFP----- 706 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R L + S+ P P+ SR H Sbjct: 707 ---------------------RKILDWRQVSKLKSTYTDALPEYVNPQTSRVHTTYALAA 745 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +++P+ I +R IA+ G KLV AD + IE R+LA +A Sbjct: 746 TTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVL 805 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF G D++ T + F V + + R K + + Y A +A+ G+ Sbjct: 806 KQAFRDGLDIHAMTASEMFGVPVTGMPGEIRRRAKAINFGIIYGISAF---GLANQLGIP 862 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +K E + + ++ EH + G Sbjct: 863 REEAGTYIK--KYFERFPGIRAYMDATRDFCREHGYVETLFG------------------ 902 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 ++ P + PS R+ R N R Sbjct: 903 -----------------------RKCHYPDIKSPN---------PSHRAFNERAAINARL 930 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 G + I +A+ R + + A K ++L VHDE++ E PD Sbjct: 931 ---------------QGTAADIIRRAMVR---MDDALAAKKLSARMLLQVHDELIFEVPD 972 Query: 639 TD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 + ++ H+M P A +PL+ + Sbjct: 973 DEVAATLPVVQHVMQDAPFPAMLLSVPLQVDA 1004 >gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143] gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143] Length = 877 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 431 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 490 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + +V +L QE+ L G + ++L LF + GL LE Sbjct: 491 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 698 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P + +L M Sbjct: 798 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKAELAAVKVLVKQTMEEAI 857 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 858 Q--LSVPLIAD 866 >gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10] gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10] Length = 886 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 97/630 (15%), Positives = 192/630 (30%), Gaps = 137/630 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALK 110 + ++ L ++++ ++ + R L + I + LA P L Sbjct: 365 EPVRAWLADSEIPKRGYDLH--RIDLALHWQ-GIAFAGAAFDVHLAAYLLDPTESNQTLS 421 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L+ + +E F KG ++ H L Sbjct: 422 GLASKYGLAYLQADE-----DVFGKGAKYKVPDVEKLSEHMARKCLAVSELVPIQEKELA 476 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + L E L + + +G V+ L + + + KL QE+ + G Sbjct: 477 ANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIA-GTE 535 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF++ L + T+T +KL P Sbjct: 536 FNLNSPKQLGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPY------------------ 577 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +R LQ+ ++ + + H Q I Sbjct: 578 ----------HDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTYYRQTIAATGRLS 627 Query: 351 TSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + P+ I +R + SE G ++ AD + IE RVLA ++ ++ +AF Sbjct: 628 SQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVH 687 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 D++ T F V +V + R K + + Y + + A Sbjct: 688 DMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAAA 744 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + ++ + R + + A +D ++ Sbjct: 745 FID------QYFEVFQGVRRYMDVIVKQAKQDGYV------------------------- 773 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTT 583 K ++ R+R LP + + R+ +NT Sbjct: 774 -----------KTLLERRRY-----------------LPEINASNFNLRSFAERTAMNTP 805 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETP 637 +Q + DI+ M++ KA + ++L VHDE+V E P Sbjct: 806 ------------------IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVP 847 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + + E ++ +M+ +PLK+E Sbjct: 848 EDELEVMKELVPDVMSQALK--LSVPLKSE 875 >gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067] Length = 566 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 188/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQ 121 +D + V +++ + L + ++LA PS A++ Sbjct: 54 SDASKVVYDAKKTMVAMHR---LGYAVSGITFDIMLASYLLNPSDSIADFTSVAIRHDYT 110 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + + D E ++L + Sbjct: 111 EVETDEAVYGKGAKRSTPEESVVAPHLARKAVAIAVLEKRLLDD----LEKNEQLSLMED 166 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 167 LELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 225 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 226 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 270 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 271 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 314 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 315 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 374 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 375 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFV 431 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 432 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 468 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 469 ----------------------------------RNFNVRGF-AERTAMNTP-------- 485 Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M + + K ++L VHDE++ E P+ + Sbjct: 486 ----------IQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLE 535 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 536 EIVPDVMENAVE--LSVPLKVD 555 >gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] Length = 1023 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 105/635 (16%), Positives = 197/635 (31%), Gaps = 138/635 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 L+ LE++ + + + F +L I + +++ + Sbjct: 495 DALRPVLESSGILKIGFDVKFTAVMLAQH---GITLRNTDDAQLISYVLDAGRGSHGLES 551 Query: 114 EALKLSSQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A + M +EG+ L + K + D+ P E + + V R + Sbjct: 552 LAERWFGHAMLKEGELLGSGKGKITFDQVPIDKAAPLSAEGADMALRVWR--VLKPRLVA 609 Query: 173 KRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + + + E+ L + + RG +D + L+ +++ E++ + G Sbjct: 610 EHMTTVYETLERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQEIA-GEPV 668 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRASRS 286 + +++ LF + L T+T T +VL + ++ R Sbjct: 669 NVGSPKQIGDILFGKMSLPGGTKTKTGAWSTTAQVLDELAEQGHDLPKKILEWRQ----- 723 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 S+ P P+ R H T Sbjct: 724 --------------------------VSKLKSTYTDALPEYVNPQTHRVHTTYALAATTT 757 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R IA+ G KLV AD + IE R+LA +A +A Sbjct: 758 GRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQA 817 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T + F V + + R K + + Y A +A+ G+ Sbjct: 818 FRDGLDIHAMTASEMFGVPIKGMPSEIRRRAKAINFGIIYGISAF---GLANQLGIAREE 874 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + +K + +E +M + + RQ H V+ L+ Sbjct: 875 ASAYIK-----KYFERFPGIRAYM------------------DETRDFCRQ-HGYVTTLF 910 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 GR Y D+ N Sbjct: 911 -------------------------------------------GRKCHYPDIK----ASN 923 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635 + R +L Q + DI+ M A ++L VHDE++ E Sbjct: 924 ASVRAFNERAAINARL-----QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFE 978 Query: 636 TPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 PD + E ++ H+M P A +PL + Sbjct: 979 VPDAEVEATLPVVQHVMQDAPFPAVLLSVPLHVDA 1013 >gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii] Length = 876 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 85/534 (15%), Positives = 172/534 (32%), Gaps = 66/534 (12%) Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALK 117 E+ ++ L+ I + L+LA PS V + Sbjct: 362 EDETKKKTVFDAKRTVIALRRH---GIELKGIEFDLLLASYLINPSESPSDFADVAKLHG 418 Query: 118 LSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + +E + + K +Y+ + E C DV +L Sbjct: 419 FNEVQSDE--AVYGKGAKLKLPDREIYEEHIARKAVGLTKLAETC-RDVLKE---NDQLS 472 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + + G VDV + + ++++E+ L G + Sbjct: 473 LFYDLEMPLALILADMEWTGVKVDVDRLTEMGDELHNRLQEIEKEIYELA-GQEFNINSP 531 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL + T+T VL + + R + ++ Sbjct: 532 KQLGHILFEKMGLPVIKKTKTGYSTSADVLEKLESSHEIVRYILEYRQL-GKLQSTYIDG 590 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ ++ QN + H +Q +T ++D Sbjct: 591 LLKVVH---------------------------QN---THKVHTRFNQALTQTGRLSSAD 620 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + SE + AD + IE RVLA ++G+Q ++AF D Sbjct: 621 PNLQNIPIRLEEGRKIRQAFVPSEKDWVIFSADYSQIELRVLAHISGDQKLIEAFREDMD 680 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T F+V +VT + R K + + Y + G+ ++ Sbjct: 681 IHTKTAMDVFHVQKEEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAGQFIE 737 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + +M E E A ++ T R ++ + SR + + + Sbjct: 738 -----RYFASYPDVKEYMDEIVRE-AKRKGYVTTLLHR-RRYLPEITSRNFNVRSFAERT 790 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580 T G A K+ + + K + ++L L++ + + Sbjct: 791 AMNTPIQGSAADIIKKAMIDMAERLKKEQLKSRMLLQVHDELIFEVPPDEIETM 844 >gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756] gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756] Length = 966 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 94/537 (17%), Positives = 167/537 (31%), Gaps = 80/537 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V VA N+ ++ VL PI + + + Sbjct: 441 LKPLLEDPAVLKVAQNAKYDIAVLARHGIQVSPIEDTMLISYVLEA-------------- 486 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKP---NHREAWRLFGEYCKGDVTVTREIFK 173 L M+E EL K + + K A Y D VT +++ Sbjct: 487 GLHGHGMDELSELW-LGHKPIPFKQVAGTGKAQISFKHVALSEATAYAAEDADVTLRLYE 545 Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P ++E + + + + + G VD L+ + + + Sbjct: 546 TLKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALRRLSNEFSLRMAEFEARAT 605 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + +++ LF E + T T T VL S + +V + Sbjct: 606 EL-VGRPFNLGSPKQIGDVLFGEMQIKGGKKTATGQWSTDSDVLESLALEH-ELPRVLLD 663 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + S+ LV A+ R R H Sbjct: 664 WRQLSKLKGTYTENLVAAIAE------------------------------RTGRVHTSY 693 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T +SDP+ I +R IA +GK L+ AD + IE R+LA + Sbjct: 694 ALAATTTGRLSSSDPNLQNIPVRTEEGRKIRKAFIAPQGKVLISADYSQIELRLLAHIGD 753 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF+ G D++ T + F+ + R K + + Y A +A+ Sbjct: 754 IPQLKRAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAF---GLANQ 810 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ +KT E + + + + EH G K + Sbjct: 811 LGIPQGEAGAYIKT--YFERFPGIQAYMDATKAFVREHGYVTTIFGR-----KINIPEIQ 863 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVY 570 ++ +A G A +R + + + + ++L LV+ Sbjct: 864 AKSVGQRQFAERAAINAPIQGAAADVMRRAMIRMPEALQAAGLSARMLLQVHDELVF 920 >gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58] gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58] Length = 878 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 105/580 (18%), Positives = 197/580 (33%), Gaps = 70/580 (12%) Query: 38 DDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 D + V + + ++L + D++ +N + L+ N I I+ C Sbjct: 344 DGNRVVYVELKQRPEELLEILCKFFSREDLSFYGYNIKRDLHALR---NAGIVIYNVSCD 400 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWR 155 L LA L G S + G + AR+ K H L P + E + Sbjct: 401 LALAEH------LIHGGARTSFQSLLVSHGWAAVAARYVKEWGHHALPLVQLPENPEKY- 453 Query: 156 LFGEYCKGDVTVTREIFKRLEP--LSSK----EQELWYLDQTINDRGYCVDVALAHTLNQ 209 FGE + + + L+ L+ E L ++ ++ G +D +L Sbjct: 454 -FGELVALLPQIKESLLEELQKKQLTDVFFNLEMPLEHVLFSMERNGMPLDSKKLVSLEH 512 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 ++ + L +E+ +L G + + ++L L+ + G+ D ++T VL + ++ Sbjct: 513 SLEQDLAILTEEIYTLA-GEPFNIKSPKQLANILYNKLGITPLDKAKSTRAEVLEALREE 571 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 ++ F + P Q Sbjct: 572 HKIIEKLL-------------------------------MFRALEKLLSTYVKALPRQVA 600 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR------SCVIASEGKKLVVADLAG 383 P+ R H +Q+ T DP+ I R + ++ E + AD + Sbjct: 601 PQTQRIHATFEQMGTATGRLACRDPNLQNIPKRSSRGLSLREAFLVPCETVSFLAADYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA ++ ++ L AF GED++ T ++ F+V QVTK QR K + + Y Sbjct: 661 IELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKTVNFGIIYGQ 720 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A ++ + L+ L++ E + F +G Sbjct: 721 QAY---GLSKILKIPLSEAQELIQA--YFERYSGVARFVEETIAAASHDLKVTTMLGR-- 773 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILML 562 ERV W + H + L T G A K + + +D+ ++L Sbjct: 774 ERVIDNWDE-HPGIRASSGRL---AVNTRIQGSAAELIKCAMLEISKEIQDRKLQSRMLL 829 Query: 563 PSGRSLVYRDVGNNRSYLNTTTR-QLTREYTYGGKLTENI 601 L++ + + ++ T L NI Sbjct: 830 QIHDELIFEVPDGEMQEMCALVQEKMEAAMTLTVPLVVNI 869 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 21/84 (25%) Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-----EFNAS 645 +Q + +++ M+ K ++L +HDE++ E PD + Sbjct: 794 AVNTRIQGSAAELIKCAMLEISKEIQDRKLQSRMLLQIHDELIFEVPDGEMQEMCALVQE 853 Query: 646 MLYHLMTSNPS----------WAK 659 + MT WA+ Sbjct: 854 KMEAAMTLTVPLVVNILIGKNWAE 877 >gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] Length = 964 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 90/528 (17%), Positives = 159/528 (30%), Gaps = 79/528 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ V V N ++ V+ PI + L+ Sbjct: 439 LKDLLEDPSVLKVGQNIKYDLAVMARRGVRVAPIDDVMLISY---------VLEG----- 484 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA---WRLFGEYCKGDVTVTREIFK 173 L M+E L + + + K + Y D VT + + Sbjct: 485 GLHGHGMDELARL-HLGHEPIPFKSVAGTGKSQKSFKHVELKSAVCYAAEDADVTLRLHR 543 Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P + E + + + + G VD +L+ +L++E Sbjct: 544 LLKPRLAAEGLSNVYETLERGMPAVLADMERAGVRVDPDRLRSLSSTFGQRMAELEEEAH 603 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279 L G + ++ LF E L T + T VL + P + + Sbjct: 604 KLA-GRPFNVGSPRQIGEILFGEMNLPGGKKTASGQWGTDASVLEDLAQSHPLPRTILDW 662 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R S+ P+ +R H Sbjct: 663 RQL-------------------------------SKLKGTYTDALVAAMDPQTNRVHTSY 691 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +SDP+ I +R IAS G L+ AD + IE R+LA + Sbjct: 692 QLAAATTGRLASSDPNLQNIPIRTETGRQIRQAFIASPGHVLISADYSQIELRLLAHIGD 751 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF++G D++ T + F V + + R K + + Y A +A+ Sbjct: 752 IPELKRAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIIYGISAF---GLAAQ 808 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ +KT E + ++ + E F+ T R + H Sbjct: 809 LGIDQGEAGAYIKT--YFERFPGIRDYMDRTKALVKEQG----FVTTVFGR-RIHIPAIH 861 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 S+ +A G A +R + + + ML Sbjct: 862 SKSGAERQFGERAAINAPIQGAAADIIRRAMIRMPGALAEAGLQTRML 909 >gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 889 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 443 GVKKAIPEREKFLEHLARKVAVLVETEPVLIEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 502 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + +V +L QE+ L + ++L LF + GL LE Sbjct: 503 GIKVKKETLLEMQAENEVVIEQLTQEIYELAD-EEFNINSPKQLGVLLFEKLGLPLEYTK 561 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + +L + + DG++ Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VVSLQDWILDDGKI------ 614 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +A+ G++ + T Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKKAKAYIDTYF------------- 753 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 754 -------------------------------ERFPGIKNYMEEVVREARDKGYVETLFKR 782 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ +L M Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEAI 869 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 870 Q--LSVPLIAD 878 >gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] Length = 950 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 114/679 (16%), Positives = 195/679 (28%), Gaps = 181/679 (26%) Query: 13 PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV------MPQVLKEALENTDV 66 +D + + L F P E + LK LEN ++ Sbjct: 380 SVDTETTSL----DTFEAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLKPLLENPEI 435 Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123 N ++ VLK N + + +LA P + L + AL LS Q + Sbjct: 436 GKTGQNLKYDILVLK---NYGVELQPVEFDTMLASYVLDPESRHNLDDMA-ALHLSRQTV 491 Query: 124 EE------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----EIFK 173 + GK I F + +Y D +T E+ Sbjct: 492 KYDELVGTGKSAIGIF-----------------EVEPQKLSDYACQDADITLKLRGELAA 534 Query: 174 RLEPLSSK-------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 +LE E L + + +G +D L V+ E L + + Sbjct: 535 KLEATPELLEVCRTLEFPLVRVLADMEHQGVSIDTEHLAKLAVKVNEELVGLTERIHE-A 593 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF L + T+T +VL L P A +V R Sbjct: 594 AGETFNIDSPKQLGHILFDVLKLPTKKATKTGYSTNVQVLEELALLNPIAAEVLEYRSL- 652 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + P R H +Q I Sbjct: 653 ------------------------------QKLKGTYIEALPKLLHAATGRLHTSFNQSI 682 Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397 T +S+P+ I + +R I S + L+ AD + IE RV A ++G+ Sbjct: 683 TATGRLSSSNPNLQNIPIRTDLGKEIRRAFIPSNPENLLLSADYSQIELRVAAELSGDPM 742 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF ED++ T F+ +VT D R K + + Y + G+ Sbjct: 743 LIEAFRNHEDIHAATARVIFDT--DEVTSDMRRKAKEVNFGVLYGIQPFGLSQ---RLGI 797 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + K+ Sbjct: 798 PQKEAKE-----------------------------------------IIDTYMAKYP-- 814 Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 +++ L E+ + G + +RR VP + Sbjct: 815 -GMFSALQTTVEEARKLGYVTTLMGRRRYVPDLNSP------------------------ 849 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHD 630 N R+ T +Q + DI+ M + + ++L VHD Sbjct: 850 ----NGNIRKAAERVT-----MNTPIQGTAADIIKYAMCTISRRLKEERLNSVMLLQVHD 900 Query: 631 EIVCETPDTDEFNASMLYH 649 E++ ETP ++ + L Sbjct: 901 ELLFETPADEQSRLTELVE 919 >gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] Length = 881 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 111/639 (17%), Positives = 201/639 (31%), Gaps = 160/639 (25%) Query: 57 LKEALENTDVTIVAHNSYFER--TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L NT + + F+R +L L I + + LA+ + Sbjct: 363 FKEFLGNTALKVY----DFKRSKVLLSR---LGIELSQPSFDSRLAKYLLSTVDNNEIAT 415 Query: 115 ALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----- 168 L ++ E + + + K R P V Sbjct: 416 IANLYGKTRLVEDEVVYGKGAK---------RALPEKAILLSHLARKVTVLVETEKPMTD 466 Query: 169 -REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 +L L EQ L ++ + G V+ T+ + +L QE+ L Sbjct: 467 LLRQHDQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQTENEEVLARLTQEIYDLA- 525 Query: 228 GLVSSSRCLEKLKTWLFLETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + GL T+T VL + P ++ + R Sbjct: 526 GEEFNINSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQI 585 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L + + +DG++ H Q Sbjct: 586 AKIQSTY-VMGLQDWILADGKI-------------------------------HTRYLQD 613 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396 +T + DP+ I +R + + L+ +D + IE RVLA ++G++ Sbjct: 614 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDE 673 Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF G D++ +T R F + P VT + R K + + Y +A+ Sbjct: 674 HLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGVVYGISDF---GLANNL 730 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + T Sbjct: 731 GISRKEAKSYIDTYF--------------------------------------------E 746 Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + N + + + G + +RR++P + + R+ R Sbjct: 747 RYPGIKNYMENVVREARDKGYVETLFHRRREIPDI--------------NSRNFNVRGF- 791 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628 R+ +N+ +Q + DIL M+ +A D ++L V Sbjct: 792 AERTAINSP------------------IQGSAADILKIAMIRLDQALTDGNFKTRMLLQV 833 Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 HDEIV E P+ + L +M S +PLKA+ Sbjct: 834 HDEIVLEVPENELTAIKTLVKDIMESAIELV--VPLKAD 870 >gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 891 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 99/632 (15%), Positives = 202/632 (31%), Gaps = 153/632 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L N ++ ++ R ++ +N I + L++A P+ + Sbjct: 376 LANGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR----TV 428 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175 KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 429 AKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFVEELK 481 Query: 176 -----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E + E L + + +G VD + + + +++QE+ L G Sbjct: 482 KNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEIYKLA-GTE 540 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF L + T+T VL + + R + Sbjct: 541 FNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQL-GKLN 599 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ ++ D S+ H +Q++T Sbjct: 600 STYIEGLLKVVHED------------------------------SSKIHTRFNQVLTQTG 629 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++DP+ I +R + SE G + AD + IE RVLA +A ++ ++A Sbjct: 630 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ D++ T F V +VT + R K + + Y + G+ Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKA 746 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + E++ ++ + E+ + A + ++ T R R+ ++ Sbjct: 747 AAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIPEITS-- 793 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 R+ R R+ +N Sbjct: 794 --------------------------------------------RNFNLRSF-AERTAMN 808 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCE 635 T +Q + DI+ + M+ + G ++L VHDE++ E Sbjct: 809 TP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFE 850 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 P + L +M A +PLK + Sbjct: 851 APKEEIEKLEQLVPEVMEHAIELA--VPLKVD 880 >gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 875 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 188/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQ 121 +D + V +++ + L + ++LA PS A++ Sbjct: 363 SDASKVVYDAKKTMVAMHR---LGYAVSGITFDIMLASYLLNPSDSIADFTSVAIRHDYT 419 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + + D E ++L + Sbjct: 420 EVETDEAVYGKGAKRSTPEERVVAPHLARKAVAIAVLEKRLLDD----LEKNEQLALMED 475 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 476 LELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 624 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFV 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794 Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M + + K ++L VHDE++ E P+ + Sbjct: 795 ----------IQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864 >gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus] Length = 834 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 78/432 (18%), Positives = 147/432 (34%), Gaps = 64/432 (14%) Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHT 206 E ++ + + L E++L +L + G +DVA Sbjct: 401 TEDAAHRALLSERLHQNLLKRLQGEEKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQA 460 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR----- 261 L+ + E +L++E+ L G + ++L+ LF E L T+ T +R Sbjct: 461 LSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDELRLPALGKTQKTGKRSTSAA 519 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + ++ P ++ +R ++ Sbjct: 520 VLEALREAHPIVEKILQHREL-------------------------------TKLKNTYV 548 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376 P PR R H +Q T +SDP+ I + +R +A G L Sbjct: 549 DPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWAL 608 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V D + IE RVLA ++G++ ++ F+ G+D++ T + F V P V R K + Sbjct: 609 VALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVN 668 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A +++ + + + E + + R E E + Sbjct: 669 FGVLYGMSA---HRLSQELSIPYEEASAFI------ERYFQSFPKVRAWIEKTLEEGRKR 719 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R ++ ++RV + + G A K V L + Sbjct: 720 GYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRQMG 778 Query: 557 NLILMLPSGRSL 568 ++L L Sbjct: 779 A-RMLLQVHDEL 789 Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 11/128 (8%) Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604 K + + L GR Y + G R + R + RE VQ Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 + D++ M + G ++L VHDE++ E P + L M A Sbjct: 758 TAADLMKLAMVKLFPRLRQMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816 Query: 660 GLPLKAEG 667 +PL+ E Sbjct: 817 -VPLEVEA 823 >gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] Length = 887 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 85/513 (16%), Positives = 167/513 (32%), Gaps = 129/513 (25%) Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 +++++ E L + ++ G+ +D L+ + L +++ Sbjct: 481 MTALYQKI------ELPLIPVLASMESIGFKIDQEQLKNLSAHFEARIETLTRQIYEEA- 533 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G + ++L LF E GL T+T + ++L P Sbjct: 534 GQRFNINSTKQLGMILFEEMGLPPIKKTKTGYSTSVEVLEQLRP---------------- 577 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 NT+V+ + L++ ++ G P + + +Q +T Sbjct: 578 ---YNTIVDDI---------LEYRTVTKLDSTYGRGLIKLVDPETEKIYSHFNQTVTATG 625 Query: 348 TSITSDPDPLQI-----ISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I + +R + S LV AD + IE RVLA + ++ L+A Sbjct: 626 RISSSDPNLQNIPVRTDLGREIRRVFVPSSPMCVLVDADYSQIELRVLAHLTQDENLLEA 685 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +D++ T + F V VT++QR+ K + L Y A + G+ N Sbjct: 686 FAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIYGKQAFSL---GKELGIGRNQ 742 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + ++E Sbjct: 743 AQDYIDM--YFSRYPKVYAYMKAIREEAKTKGYV-------------------------- 774 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + +RR +P + + +++ SG R LN Sbjct: 775 ---------------TTLYGRRRYIPEIQSRNR-----MIVQSG----------ERMALN 804 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635 T +Q + DI+ M+ ++L +HDE++ E Sbjct: 805 TP------------------IQGSAADIMKIAMVKVYHRLAKESFRSHLLLQIHDELIIE 846 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 P+T+ E +L M + S +PL + Sbjct: 847 APETESEKILRLLTEEMENAVS--LSVPLVVDA 877 >gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] Length = 1009 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 99/645 (15%), Positives = 197/645 (30%), Gaps = 133/645 (20%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 + +P+ LK LE+ V + N ++ +++ ++ + + T+++A + Sbjct: 464 LPMESALPR-LKALLEDDSVLKIGQNIKYDALIMRRHGDIRVAPYD--DTMLMAYACDQG 520 Query: 107 -SALKAVGEALKLSSQKMEE----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 L G +LS + + ++ + T +C+ A EY Sbjct: 521 RGGLAGFGMD-ELSKRHLGHTPIAFTDVAGKGKAQSTFDCI----------AVDKATEYA 569 Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 D VT ++ + E + + + + G VD + L+ Sbjct: 570 AEDADVTLRLWHLFRARIAAEGMAAVYATLERPMPAVLGQMEFNGIEVDRTVLSRLSGDF 629 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLT 270 +L+ E+ L G + +++ LF + GL T T + L Sbjct: 630 AQSLARLEDEIYELA-GQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAKVLEDLV 688 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + R ++ L++ ++ P Sbjct: 689 SSEDLTEDQRRLPAKL---------------------LEWRQLAKLKSTYTDSLPQHIDA 727 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385 R H T +++P+ I +RS IA+ GKKL+ AD + IE Sbjct: 728 DTGRIHTCYSLASTSTGRLSSTEPNLQNIPIRTREGRMIRSAFIAAPGKKLISADYSQIE 787 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RVLA MA AF G D++ T + F V + + R K + Sbjct: 788 LRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAIN--------- 838 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 G++ + + ++A ++ E P Sbjct: 839 -----FGIIYGISAFGLSQQLGIPR-----QEAGDYIAKYFERFP--------------- 873 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + + E+G G Sbjct: 874 -------------GIRAYMDAMRSKVHEDGHVETLF-----------------------G 897 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625 R + + ++ + + + G + I +A+ R + ++ Sbjct: 898 RKIHFPEIKTPKWNMRQFFERAAINAPIQGTAADIIRRAMVR---VPAALEQAGVRARML 954 Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667 L VHDE+V E D++ E + +M P+ A +PLK + Sbjct: 955 LQVHDELVFEADDSEVEATIKAVTRVMERAAEPAVAFSVPLKVDA 999 >gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A] gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A] Length = 1020 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 101/632 (15%), Positives = 190/632 (30%), Gaps = 132/632 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 ++LK LE+ + N F +L I + +++ + + Sbjct: 492 ELLKPILESGGHLKIGLNIKFSAVLLAQH---GIVMQNHDDVELISYTLDAGRGSHDLAS 548 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + EL +R + A Y +T +++ Sbjct: 549 LAKRWLGHTTLSHGELTG---------SGRNR-LAVDQVAIDRATAYAAEYADMTLRLWQ 598 Query: 174 RLEPLSSKEQELWYLD----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P E+ + + RG +D + L+ + +L+ E++ Sbjct: 599 VLKPRLVAERMNAVYETLERPMTATLARMERRGITIDRQVLSRLSGELAQTAARLEAEIQ 658 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 L G + +++ +F + GL T+T + + F Sbjct: 659 QLA-GEPINVGSPKQIGDIMFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHDFP----- 712 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R L + S+ P P+ R H Sbjct: 713 ---------------------RKILDWRQVSKLKSTYTDALPEYVNPQTRRVHTTYALAA 751 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +++P+ I +R IA+ G +LV AD + IE R+LA +A Sbjct: 752 TTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVL 811 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF G D++ T + F V + + R K + + Y A +A+ G+ Sbjct: 812 KQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAF---GLANQLGIP 868 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A +K E + + ++ EH Sbjct: 869 REEAAAYIK--KYFERFPGIRAYMDATRDFCREHGYV----------------------- 903 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ P + PS R+ R N R Sbjct: 904 ------------------TTLFGRKCHYPDIKAPN---------PSHRAFNERAAINARL 936 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 G + I +A+ R + + A K ++L VHDE++ E PD Sbjct: 937 ---------------QGSAADIIRRAMVR---MDDALAAKKLSARMLLQVHDELIFEVPD 978 Query: 639 TD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 + ++ H+M P A +PL+ + Sbjct: 979 EEVAATLPVVQHVMQDAPFPAVLLSVPLQVDA 1010 >gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909] Length = 876 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 104/664 (15%), Positives = 201/664 (30%), Gaps = 147/664 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F + + D + L + LE+ + T + +++ + V Sbjct: 328 YLKDA-ILKFGFYTNHQ--HVVINADDVKDYKNLVQWLEDKNTTKIVYDAK-KTYVSAHR 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++I ++LA P ++ V + L Q K+ I F KG+ H Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITVFGKGKKHHIP 439 Query: 143 YDRNKPNHREAWRLFGEYCKGDVT----VTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + H VT E + ++E L E L + + + G Sbjct: 440 EESILNEH----IASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 D+ + + + L + + G + ++L LF L + T+T Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554 Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 VL + P + R S+ Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQL-------------------------------SK 583 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 + + R H +Q + + DP+ I +R Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKP 642 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 S+ ++ AD + IE RVLA + ++ AF G D++ T + FNV QV R Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + + G+ + ++ + + + Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKKAKAFID------DYLASFPGVKQYMSDI 753 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A ++ T +RR +P + Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + RS R+ +NT +Q + DI Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662 + M+ TK ++L VHDE++ E P ++ E + + +M +P Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861 Query: 663 LKAE 666 LK + Sbjct: 862 LKVD 865 >gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium pseudotuberculosis I19] Length = 886 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 107/643 (16%), Positives = 188/643 (29%), Gaps = 141/643 (21%) Query: 42 VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 V D + ++ H + +L ++ +A Sbjct: 355 VIAVDLSDIDPQDEKALAQWLRSETPKYLHEAKATFHMLS---GRGFELNGVAHDTAIAA 411 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-- 159 P + K + L + ET L + P+ E Sbjct: 412 YLLRPG--------QRTYDLKDVYQRHLQRQLSGDETQGQLSLLDAPDSEELIDSVIAIL 463 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++T E E E L + + G VDV ++ + + Sbjct: 464 ELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQLKVFIERVQEHE 523 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 ++ + ++L+ LF GL T+T + L + F + Sbjct: 524 AAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTAAKEIEALAVKHPDPFLD 583 Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + A R L L++A+ SDGR+ T Sbjct: 584 HLLAHRENQKLKTTLEGLIKAVGSDGRIHTT----------------------------- 614 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLA 390 +Q + +++P+ I +RS + EG L+ AD + IE RV+A Sbjct: 615 --FNQTVASTGRLSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMA 672 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++A+ GEDL+ +R F V QVT + R K M L Y A Sbjct: 673 HLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAF---G 729 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + + K+ Sbjct: 730 LGQQLNIPAGEA--------------------------------------------KQIM 745 Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R + L EQ ++G + + +RR +P L S + Sbjct: 746 TSYFERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLP-------------ELGSDNRVA 792 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG--YD 623 + R+ LN +Q + DI+ M+ KAG Sbjct: 793 RENA--ERAALNAP------------------IQGTAADIIKVAMIRVDQELKKAGVVSR 832 Query: 624 IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 ++L VHDE+V E P+ E ++ M + S L + A Sbjct: 833 VLLQVHDELVVEIAPNELEQVREIVEKEMDAAISLRVPLEVSA 875 >gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814] gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814] Length = 956 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 91/563 (16%), Positives = 169/563 (30%), Gaps = 77/563 (13%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP-SALK 110 +LK LE+ + V N ++ V + I + T++L+ + Sbjct: 423 ILKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAALEAGQHNHG 482 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + K KE+ K T + + +Y D VT Sbjct: 483 MDVLSELHFDHKPIPFKEVAGTGKKQITFDKVPVP----------EATKYAAEDADVTLR 532 Query: 171 IFKRLEPLSSKE--QELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++ L+P S E L+ + + G V+ L+ + + Sbjct: 533 LWALLKPRLSAEGMATLYETIERPMVPVVAQMERAGIFVERETLSRLSGDFAQRMAQYEA 592 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276 E L G + ++L LF E L T+T T L + ++ Sbjct: 593 EAYELA-GREFNMGSPKQLGEILFGEMELPGGKKTKTGAWATGADALEDLAAEGHELPKI 651 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 S+ + L E +N++ R H Sbjct: 652 LLGWRSLSKLKSTYTDALGECINAE------------------------------TGRVH 681 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + + +SDP+ I +R+ +A EG L+ AD + IE R+LA Sbjct: 682 TSFNLVGAQTGRLSSSDPNLQNIPIRTEEGRKIRAAFVAQEGNVLIAADYSQIELRLLAH 741 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 + AF D++ T + F V + R K + + Y A + Sbjct: 742 IGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAINFGIIYGISAF---GL 798 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A G+ + +K +A ++M E A E ++ TA R + W Sbjct: 799 ARQLGIPRGEASEYIKAYNA-----KFPGILKYMDE-MKAFAREKGYVETAFGR--RIWM 850 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570 + + + G A KR V + + ++L L++ Sbjct: 851 KGINGKGPERGFAERQAINAPLQGSAADIIKRAMVKMPAALEKSGLQAKMLLQVHDELIF 910 Query: 571 RDVGNNRSYLNTTTRQLTREYTY 593 +++ T+ Sbjct: 911 EAPKAEAEKTIKLVKKIMETATF 933 >gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551] gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551] Length = 875 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 93/623 (14%), Positives = 186/623 (29%), Gaps = 135/623 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 LE+ V N RT++ + I +++A P+ A + KL Sbjct: 360 LEDGRVKKTVFNGK--RTIVSLKWA-GHEIKGIEHDVMIASYILNPAEANDDLATIAKLK 416 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + E + + KG H Y K + ++ E Sbjct: 417 GYHQVQSDEAV--YGKGAKRSIAEAAQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFE 474 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + +G +D A + + + + K++ ++ G + ++L Sbjct: 475 KLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYA-GQEFNINSPKQL 533 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL ++ R + + L + Sbjct: 534 GVVLFEKMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQL-GKLQSTYIEGLKK 592 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ + H +Q +T + DP+ Sbjct: 593 VIHESD------------------------------GKVHTRFNQTLTQTGRLSSVDPNL 622 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + S + AD + IE RVLA +A ++ + AF+ D++ Sbjct: 623 QNIPIRLEEGKKIRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHT 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+V +VT + R K + + Y + + G+ A + Sbjct: 683 KTAMDVFHVEREEVTSNMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKAAATFI---- 735 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + + + + A E ++ T R R+ ++ Sbjct: 736 --ERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHR-----RRYLPEITS----------- 777 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 R+ R R+ +NT Sbjct: 778 -----------------------------------RNFNLRSF-AERTAMNTP------- 794 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 795 -----------IQGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKIL 843 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 844 EKIVPEVMENALE--LEVPLKVD 864 >gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1] gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1] Length = 504 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 75/482 (15%), Positives = 152/482 (31%), Gaps = 66/482 (13%) Query: 120 SQKMEEGKELIARFCKGETHE--CLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLE 176 M+ E+ + E +N+ N R+ + Y D +T ++ LE Sbjct: 30 RHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVLE 89 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E L + I G +D + + ++++E+ L Sbjct: 90 KELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA 149 Query: 227 YGLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281 G + +++ LF + + T+T T + VL S + P ++ +R Sbjct: 150 -GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR- 207 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 G + P PR R H +Q Sbjct: 208 ------------------------------GLKKLLGTYIDALPLLINPRTGRVHTSFNQ 237 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +S+P+ I +R I EG AD + IE R++A ++ ++ Sbjct: 238 TVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDK 297 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF + D++ T A+ + + V D R K + Y +A Sbjct: 298 NMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVF---GLAERMN 354 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ L+ + + + + + A E ++ T R K+ +SR Sbjct: 355 VDRKEAKELIDG------YFETYPGVKAYMDKSIQVAQEKGYVETIFHR-KRFLPDINSR 407 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVYRDVGN 575 + + + G A K + + + ++L L + N Sbjct: 408 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVN 467 Query: 576 NR 577 + Sbjct: 468 EK 469 >gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23] gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23] Length = 888 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 103/631 (16%), Positives = 204/631 (32%), Gaps = 141/631 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAV 112 LK+ L++ V N+ + L L IP+ L+LA + L V Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR---LGIPLENINFDLLLASYLLNTNDNSNDLGQV 422 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + +E E+ + K + D +H E + D+ + Sbjct: 423 AQEHGYDDVRTDE--EVYGKGAKRTVPD--DDETFFSHLATKARAIEQLRKDLFAKLDEN 478 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 K+ + E L + + G VD + + ++++ ++ G + Sbjct: 479 KQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEA-GEEFN 537 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T VL +P Q+ R A + Sbjct: 538 INSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQIAKLQSTY 597 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ ++S+ + H Q +T Sbjct: 598 -IAGLLKVIHSND------------------------------QKIHTRYLQTLTQTGRL 626 Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R + S EG ++ +D + +E RVLA + G++ + F+ Sbjct: 627 SSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFK 686 Query: 404 TGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ +T R F++AP ++ ++ R K + + Y +A ++ Sbjct: 687 NGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDY---GLAQRIHVSRAEA 743 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++ + E+ + + E+ + Sbjct: 744 HEFIQ--NYFHEFPGVKKYINDTIAFAKENGYVE-------------------------- 775 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 I +RR +P ++ K S RS R+ +NT Sbjct: 776 ---------------TITHRRRYLPDIHAKSF---------SKRSFA------ERTAMNT 805 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636 +Q + DI+ M+ ++L +HDE+V E Sbjct: 806 P------------------IQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEA 847 Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 P + S L +M S +PLK + Sbjct: 848 PKEEIPVLSELVPKVMDSAVK--LDVPLKVD 876 >gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297] gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297] Length = 933 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 91/622 (14%), Positives = 181/622 (29%), Gaps = 148/622 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI-CTLVLARSNGLPSALKAVGE 114 L E+ + + + FN L+I R + V+A + Sbjct: 398 LIPLFEDHAIVKTGY----DIKADYHWFNALNISPSRLLNDVQVMAFVYDSTLKRD---K 450 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLY-----DRNKPNHREAWRLFGEYCKGDVTVTR 169 +L + +I K Y R G++ Sbjct: 451 SLSAHFSHLSIDNLVIQYLQKSPKTVEDYLGKAGKRQLSPSAVKADDIGQWWAERADFVL 510 Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + LE E+ L I + G +DV H L+ + ++ Sbjct: 511 RLGQWLEQGLASRQLSRVYQEIERPLSKTLAAIEENGVKLDVEFVHELSTRFKRDLEDIE 570 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275 ++ L G+ + ++L LF GL ++ T +T + VL+ Sbjct: 571 RQAHDLA-GVEFNLDSPKQLADVLFERMGLPVKSKTASGAPSTNEEVLTELAAEHELPRL 629 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + +R ++ DG R Sbjct: 630 ILQSRRLRKLVGTYTDPLPTMTIDHDG-----------------------------DQRL 660 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H +Q ++DP+ I +R +A +G ++V AD + IE R++ Sbjct: 661 HTTYNQTGAQTGRLNSNDPNLQNIPVRSEEGRSIRKAFVAPQGYRIVAADYSQIELRIMT 720 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++AF G+D++ T A + QV+ +QR K + L Y A Sbjct: 721 HLSQDANLIQAFREGKDIHRATAAEVMGIEEEQVSAEQRRSAKAINFGLIYGMSAF---G 777 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A G++ A+ + E +P V++ Sbjct: 778 LARQLGISRTE----------------AKTYVDAYFERYP--------------GVRRYM 807 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + + +T+ GR L Sbjct: 808 DETRAE------AAESGYVETVF-------------------------------GRRLYL 830 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDI 624 + ++ Q+ R+ +Q + DI+ M++ + Sbjct: 831 PGI--------QSSNQIARKAAER-TAINAPMQGTAADIIKMAMVDVDNWLSNSSLRARM 881 Query: 625 VLTVHDEIVCETPDTDEFNASM 646 ++ VHDE+V E + D + Sbjct: 882 IMQVHDELVFEVHEDDVAALTE 903 >gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537] Length = 896 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 112/629 (17%), Positives = 204/629 (32%), Gaps = 136/629 (21%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKA 111 +K +E+ V +N +R + K LDI + +LA + L Sbjct: 375 EIKAIIESPTVEKRVYNVKAQRVLFKR---LDIELRNATFDFLLAAYLLDTTDNNAELAT 431 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + + + Q E+ A+F T E + + + E V V + Sbjct: 432 LAQKYDIYLQLDEDIYGKGAKFSVP-TDEGRVLMHIAHKADTLNQLIEP----VMVQLKE 486 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 ++L E L + + G VD + + +D + +++ + G Sbjct: 487 HEQLALYQDIELPLASVLADMEYTGIRVDQNQLQEMGESLDAQIVDVEKAIYEEA-GEEF 545 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L LF + GL + T+T + +KL QA V Sbjct: 546 NINSPKQLGILLFEKMGLPVIKRTKTGYSTAVEVLEKLADQAPIVA-------------- 591 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 LQ+ ++ + S+ H Q +T + Sbjct: 592 --------------YILQYRQLAKLKSTYIDGLLAVVYRQDSKIHTRYLQTLTQTGRLSS 637 Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 DP+ I +R + SE ++ AD + IE RVLA M G++ +AF Sbjct: 638 VDPNLQNIPMRTEAGRQIRKAFVPSEPNWQIFGADYSQIELRVLAHMTGDKNLQRAFLND 697 Query: 406 EDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 ED++ T F + +T QR K + + Y +++ G++ Sbjct: 698 EDIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYGISDF---GLSNNLGISRAEAKR 754 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + T +E WM EN A E ++ T Sbjct: 755 FIDT-----YFEKFPQVHEWM-ENAKTLAHEQGYVET----------------------- 785 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A++RR +P ++ K RS R+ +NT Sbjct: 786 --------------LAKRRRYLPDIHAKNFNR---------RSFA------ERTAMNTP- 815 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPD 638 +Q + DI+ M+ + + ++L VHDE++ E P Sbjct: 816 -----------------IQGSAADIIKIAMIKMNQVLHEHHLQARMLLQVHDELIFEAPT 858 Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++ + +M S A +PLK E Sbjct: 859 SEIPELEEIVPQVMDSAV--ALDVPLKVE 885 >gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63] Length = 854 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 114/689 (16%), Positives = 222/689 (32%), Gaps = 187/689 (27%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61 L+++FET E+ + FA FD +++ + + + + Sbjct: 319 KKLYLNFET---------------ENKELKSFAVLFDG---KVYISTDEELF----VKFI 356 Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL----- 116 ++++ N T+ +I + + + LA PS+ + L Sbjct: 357 ADSELEKYTRNIK---TLYAYADEKNIDVENIVFDIELAAYLIEPSSKDYSDKNLCASYE 413 Query: 117 -KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L E+ ++ A C E E L D+ K + +E Sbjct: 414 IALPVCTDEQNEKYEAFACYAELCEKLGDKIKAHGQEKL--------------------- 452 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 LS E L + + + G CVD + +++ + +L+ + + G + Sbjct: 453 --LSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIKELETAIYE-SAGCEFNINS 509 Query: 236 LEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF GL + T++ VL S + P V R S+ Sbjct: 510 PKQLGVVLFENLGLPCKKKTKSGYSTNAEVLESLRYEHPVVEMVLRYRTL-SKLNSTYCE 568 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L++ + DG R H +Q T ++ Sbjct: 569 GLLKVIADDG-------------------------------RIHSNFNQTETRTGRISST 597 Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I + +R A +G LV AD + IE RVLA ++G++ +KAF+ ED Sbjct: 598 EPNLQNIPVRTELGREMRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNED 657 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T ++ FN+ VT R+ K + G+ + A + Sbjct: 658 IHAITASQVFNMPLDMVTPIMRSRAKAVN--------------FGIVYGIGAFSLAKDI- 702 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 G + + K + S + + + Sbjct: 703 --------------------------------GVSNKEAKHYIESYLAHYSGVDSYMKNV 730 Query: 528 FEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 E+ +G + +RR++P + K Sbjct: 731 VEKANADGYVETMFGRRRNLPELTSSKHM------------------------------- 759 Query: 587 LTREYTYGGKLTENI-VQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 +G ++ N+ +Q + DI+ M+ +VL VHDE++ E P Sbjct: 760 ---IRAFGERVARNMPIQGTAADIIKIAMIKVDERMKAENLRARLVLQVHDELIVEAPQD 816 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 + +++ M + +PL A+ Sbjct: 817 ESMRVALIVQEEMENAVK--MSVPLTADA 843 >gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100] Length = 864 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 106/628 (16%), Positives = 186/628 (29%), Gaps = 166/628 (26%) Query: 46 DCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 D DP + +K L + H++ A + + +A Sbjct: 351 DLADLDPKDEKAIKTWLADPASPKWFHDAK---RAFHALAPQGLELDGVEHDASIAAYLL 407 Query: 105 LPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 P + +G+ L + R P + + + Sbjct: 408 RPDVRISGLGDIL-----------------------QSQAGRELPANADGFDRAQ--AVR 442 Query: 164 DVTVTREIFKRLEPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVER 215 D+ + ++L ++K++EL+Y + + G VD L+ + Sbjct: 443 DLVK--VLTEKLA--AAKQEELYYDLEVPLCLILARMEHEGIAVDGEHLQELSNDYAAKI 498 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 + L + ++L+ LF + L T+T + +KLT Q Sbjct: 499 DEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTGYSTAAAELEKLTAQTNH 558 Query: 276 VFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 F + A R ++ L+EA+ DGR+ T Sbjct: 559 PFLAHLMAHREYQKMKTTIDGLIEAIGDDGRIHTT------------------------- 593 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 +Q +SDP+ I +R+ A G+ L+ AD + IE R Sbjct: 594 ------FNQKGAATGRLSSSDPNLQNIPVRTDAGRRIRAAFHAGWGETLLTADYSQIEMR 647 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 V+A ++ ++ ++A+++GEDL+ +R F+V QVT + R K + L Y A Sbjct: 648 VMAHLSQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVKALSYGLVYGLSAFG 707 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + G++ K Sbjct: 708 LSQ---QLGISAGEA--------------------------------------------K 720 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 +R + L + Q E G RR LP S Sbjct: 721 VIMENYFTRFGGVKRYLDEVVHQAKETGYTETLYGRRRY---------------LPELNS 765 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621 RE L I Q + DI+ M+ +A Sbjct: 766 SNRV----------------ARENAERAALNAPI-QGTAADIIKLAMLRVDRAIREQNLK 808 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH 649 ++L VHDE+V E + S L Sbjct: 809 SRVLLQVHDELVVEVAKGELDKVSELVQ 836 >gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] Length = 886 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 97/630 (15%), Positives = 192/630 (30%), Gaps = 137/630 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALK 110 + ++ L ++++ ++ + R L + I + LA P L Sbjct: 365 EPVRAWLADSEIPKRGYDLH--RIDLALHWQ-GIAFAGAAFDVHLAAYLLDPTESNQTLS 421 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L+ + +E F KG ++ H L Sbjct: 422 GLASKYGLAYLQADE-----DVFGKGAKYKVPDVDKLSEHMARKCLAVSELVPIQEKELA 476 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + L E L + + +G V+ L + + + KL QE+ + G Sbjct: 477 ANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIA-GTE 535 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF++ L + T+T +KL P Sbjct: 536 FNLNSPKQLGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPY------------------ 577 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 +R LQ+ ++ + + H Q I Sbjct: 578 ----------HDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTYYRQTIAATGRLS 627 Query: 351 TSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + P+ I +R + SE G ++ AD + IE RVLA ++ ++ +AF Sbjct: 628 SQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVH 687 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 D++ T F V +V + R K + + Y + + A Sbjct: 688 DMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQ---NLNITRKEAAA 744 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + ++ + R + + A +D ++ Sbjct: 745 FID------QYFEVFQGVRRYMDVIVKQAKQDGYV------------------------- 773 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTT 583 K ++ R+R LP + + R+ +NT Sbjct: 774 -----------KTLLERRRY-----------------LPEINASNFNLRSFAERTAMNTP 805 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETP 637 +Q + DI+ M++ KA + ++L VHDE+V E P Sbjct: 806 ------------------IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVP 847 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + + E ++ +M+ +PLK+E Sbjct: 848 EDELEVMKELVPDVMSQALK--LSVPLKSE 875 >gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231] gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002] Length = 886 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 107/643 (16%), Positives = 188/643 (29%), Gaps = 141/643 (21%) Query: 42 VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 V D + ++ H + +L ++ +A Sbjct: 355 VIAVDLSDIDPQDEKALAQWLRSETPKYLHEAKATFHMLS---GRGFELNGVAHDTAIAA 411 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-- 159 P + K + L + ET L + P+ E Sbjct: 412 YLLRPG--------QRTYDLKDVYQRHLQRQLSGDETQGQLSLLDAPDSEELIDSVIAIL 463 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++T E E E L + + G VDV ++ + + Sbjct: 464 ELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQLKVFIERVQEHE 523 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 ++ + ++L+ LF GL T+T + L + F + Sbjct: 524 AAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTAAKEIEALAVKHPDPFLD 583 Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + A R L L++A+ SDGR+ T Sbjct: 584 HLLAHRENQKLKTTLEGLIKAVGSDGRIHTT----------------------------- 614 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLA 390 +Q + +++P+ I +RS + EG L+ AD + IE RV+A Sbjct: 615 --FNQTVASTGRLSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMA 672 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++A+ GEDL+ +R F V QVT + R K M L Y A Sbjct: 673 HLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAF---G 729 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 + + K+ Sbjct: 730 LGQQLNIPAGEA--------------------------------------------KQIM 745 Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 R + L EQ ++G + + +RR +P L S + Sbjct: 746 TSYFERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLP-------------ELGSDNRVA 792 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG--YD 623 + R+ LN +Q + DI+ M+ KAG Sbjct: 793 RENA--ERAALNAP------------------IQGTAADIIKVAMIRVDQELKKAGVVSR 832 Query: 624 IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 ++L VHDE+V E P+ E ++ M + S L + A Sbjct: 833 VLLQVHDELVVEIAPNELEQVREIVEKEMDAAISLRVPLEVSA 875 >gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 877 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 99/632 (15%), Positives = 202/632 (31%), Gaps = 153/632 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L N ++ ++ R ++ +N I + L++A P+ + Sbjct: 362 LANGEMRKHTFDAK--RAIVALKWN-GIDMQGIDFDLLIAAYLLDPADTDKDFR----TV 414 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175 KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 415 AKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFVEELK 467 Query: 176 -----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E + E L + + +G VD + + + +++QE+ L G Sbjct: 468 KNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEIYKLA-GTE 526 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF L + T+T VL + + R + Sbjct: 527 FNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQL-GKLN 585 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ ++ D S+ H +Q++T Sbjct: 586 STYIEGLLKVVHED------------------------------SSKIHTRFNQVLTQTG 615 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++DP+ I +R + SE G + AD + IE RVLA +A ++ ++A Sbjct: 616 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ D++ T F V +VT + R K + + Y + G+ Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKA 732 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + E++ ++ + E+ + A + ++ T R R+ ++ Sbjct: 733 AAEFI------EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNR-----RRYIPEITS-- 779 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 R+ R R+ +N Sbjct: 780 --------------------------------------------RNFNLRSF-AERTAMN 794 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCE 635 T +Q + DI+ + M+ + G ++L VHDE++ E Sbjct: 795 TP------------------IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFE 836 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 P + L +M A +PLK + Sbjct: 837 APKEEIEKLEQLVPEVMEHAIELA--VPLKVD 866 >gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300] gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300] Length = 889 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 443 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 502 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + ++ KL QE+ L G + ++L LF + GL LE Sbjct: 503 GIKVKKETLLEMQAENELIIEKLTQEIYELA-GEKFNINSPKQLGVLLFEKLGLPLEYTK 561 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + DG++ Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 614 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 753 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ +L M Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKVLVKQTMEEAI 869 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 870 Q--LSVPLIAD 878 >gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] Length = 877 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 106/616 (17%), Positives = 208/616 (33%), Gaps = 134/616 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV 112 LK E+ + ++ + E +L LDI + L+L PS + Sbjct: 355 SELKNIFEDKTINKISFDIKEEMVLLDK---LDIDLIGPYDDLMLMHYLIDPSRSSYDLK 411 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + +++ + LI + K + + + + + E + V + Sbjct: 412 LLSQSYLTYELDSDESLIGKGAKTKKYAEVDQDDLAKLLASQVNAIEDSRDKVFKNLAEY 471 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + ++ + E+ L + ++ G+ D + L ++ + + E+ L G + Sbjct: 472 EMVDLYENIEKRLARVLASMEIIGFGTDRKILEGLKADLEKQIEAITSEIYDLA-GSEFN 530 Query: 233 SRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T T +VL + P ++ R + Sbjct: 531 INSTKQLGEVLFKDLDLPVVKKTKTGFSTDAKVLEKLRDKHPIIEKIERYR-EIYKLRST 589 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L A++ DGR+R T + QN+ Sbjct: 590 YIEGLENAIDEDGRIRSTFR-----------------QNI--------------ASTGRL 618 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + +P+ + +R A EGK L+ AD + IE R+LA +A ++ AF Sbjct: 619 SSQEPNLQNLPIKTDEGRAIRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFNR 678 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T + F+ +VTK QR+ K + + Y S GL+ N Sbjct: 679 GIDIHTQTASEVFHTPLDEVTKLQRSEAKAVNFGIIYG---------ISDYGLSQN---- 725 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 A+ + ++++P ++ + Sbjct: 726 ------LNIPRPRAKEYIDKYKKSYP----------------------------QIKEYM 751 Query: 525 HQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + G + ++RR +P + S R+ R G R LNT Sbjct: 752 DDVVQLARSQGYIETLFKRRRYIPEI--------------SSRNFNVRSFGE-RIALNTP 796 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETP 637 +Q + DI+ M + I+L +HDEI+ E+ Sbjct: 797 ------------------IQGTAADIIKIAMIDTYNKLKEEGLDAKIILQIHDEIIIESS 838 Query: 638 DTDEFNA-SMLYHLMT 652 + D+ A +L M Sbjct: 839 EKDKEKARDILKKCME 854 >gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 894 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 99/673 (14%), Positives = 198/673 (29%), Gaps = 137/673 (20%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75 + K G+ E+ +I D + A +DV VA N Sbjct: 326 IEKIGLSIVREN-ELIAVGITLSDTEIYYIPVSG---FVTESYLADRLSDVVSVASNRNI 381 Query: 76 ERTVLKACF---------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME-- 124 +K + + +A PS E+L + Sbjct: 382 ASANIKDYLDIFEKDKINGYPLVSEKAFIDTAIAAYLLHPSNESYDYESLGREFLSLTYP 441 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQ 183 EL+ + + D + Y D + + + L + E Sbjct: 442 SKTELLGKLSINKAVNEAED--NLIKYACLSSYAYYKCADKITEQLKSENMYELFETIEM 499 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L ++ + +G VD ++++ + + L++E+ G + ++L L Sbjct: 500 PLIFVLFEMQQQGISVDKQALVDYSKVLGTKISVLEKEIYE-AAGEEFNINSPKQLGVIL 558 Query: 244 FLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 F G+ T++ T VL P ++ R A Sbjct: 559 FERLGMPNGKKTKSGYSTAADVLEKLAPDYPVVSKILEYRQLA----------------- 601 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 + Q + R H +Q IT +++P+ I Sbjct: 602 --------------KLKSTYADGL-TQYISEDGRIHGTFNQTITATGRISSTEPNLQNIP 646 Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R + +G + AD + IE R+LA M+G++ ++A+ + D++ T A+ Sbjct: 647 IRMEMGKAIRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADIHRATAAQ 706 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT +QR K + + Y + + ++ ++ A + Sbjct: 707 VFGVPLEEVTDEQRRNAKAVNFGIIYGMSSFGLSQ---DLSISRKEAKEYIERYFAS--Y 761 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + F + + E Sbjct: 762 PTIKTFIDGLVSDAKEKGYS---------------------------------------- 781 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + +RR++P + K N + R +N + G Sbjct: 782 -LTMYNRRREIPEI---KSSNFMQRSF------------GERVAMNAPIQ---------G 816 Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655 + I A+ I + ++L VHDE++ ET + + + +M Sbjct: 817 TAADIIKLAM---INVYNALKEHNLRSRLILQVHDELLVETAEDE---VDTVKQIMLDGM 870 Query: 656 SWAKGL--PLKAE 666 A L PL+ + Sbjct: 871 KNAVSLKVPLEVD 883 >gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7] gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7] Length = 856 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 89/531 (16%), Positives = 169/531 (31%), Gaps = 134/531 (25%) Query: 149 NHREAWRLFGEYCKGDVTVT-----REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 +R F + C E + L+ + E L + ++ G D Sbjct: 421 TYRSDMGDFADVCSLLPLAENLKLQLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTNG 480 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---Q 260 + + + L +++ L G + ++L L+ + GL + T++ Sbjct: 481 IREFGKWLKKDIEALTKQIYDLAGG-EFNIASPKQLGEVLYEKLGLPAKKKTKSGYSTNA 539 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL P V R + + ++ L++ + SDGR+ Sbjct: 540 EVLEELADKHPIVRLVLEYRTLT-KLSSTYVDGLLKEVESDGRV---------------- 582 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKK 375 H Q T +++P+ I I +R +A EG Sbjct: 583 ---------------HSVFKQTETRTGRISSTEPNMQNIPVRKEIGRNMRKFFVAGEGCT 627 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE RVLA + G++ K FE G D++ T ++ F + V + R+ K + Sbjct: 628 LLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHAMTASQVFGIPADMVLPEMRSAAKAV 687 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y GA + G+++ +K Sbjct: 688 NFGIIYGIGAFSLS---KDIGVSVAEAKQYIK---------------------------- 716 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKD 554 + +VS+ + + E I+NG I +RR +P + Sbjct: 717 -------------NYLDNFPKVSQF---MDKTVEDGIKNGYVTTIFGRRRYIPELSATNK 760 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 R+ +N +Q + DI+ M Sbjct: 761 ---------------VMQAFGKRAAMNAP------------------IQGAAADIIKIAM 787 Query: 615 MNA------TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWA 658 + K ++L VHDE++ E P+ + +++L M + A Sbjct: 788 VKVYQRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVLKEEMENAVKLA 838 >gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171] Length = 567 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 190/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQ 121 +D + V +++ + L + ++LA PS A++ Sbjct: 55 SDASKVVYDAKKTMVAMHR---LGYTVSGITFDIMLASYLLNPSDSIADFTSVAIRHDYT 111 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + + D E ++L + Sbjct: 112 EVETDEAVYGKGAKRSTPEESIVAPHLARKAVAIAVLEKRLLDD----LEKNEQLALMED 167 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 168 LELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 226 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 227 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 271 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 272 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 315 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 316 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 375 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 376 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFV 432 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + + + + E + Sbjct: 433 S--YPAVKEYMQDIVRFAKEKGYXE----------------------------------- 455 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 I +RR +P + R+ R R+ +NT Sbjct: 456 ------TILHRRRYIPEI--------------VSRNFNVRGF-AERTAMNTP-------- 486 Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M + + K ++L VHDE++ E P+ + Sbjct: 487 ----------IQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLE 536 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 537 EIVPDVMENAVE--LSVPLKVD 556 >gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277] gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277] Length = 863 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 106/683 (15%), Positives = 199/683 (29%), Gaps = 171/683 (25%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---------PVMPQ 55 ID +T D + ++ ++ F+F F+D H+ Sbjct: 296 NIDADTLVAFDTETTDVD--TQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFAA 353 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 + V N ++ V+K L+ P + T++LA S++ A Sbjct: 354 WAISQIYKGCVI--GQNLKYDFKVVKRNLGLE-PPVNFKDTMILAWLMDPGSSVGMDALA 410 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +L + ++++ R + A +Y D +T + +K Sbjct: 411 KRLYDYDTIKFEDVVK-------------RGETFASVALENAAKYAAEDAWITLKFYKSF 457 Query: 176 EPLSSKE-------QELWYLDQ--TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 L E E ++ + G ++ L D + L E+ LT Sbjct: 458 LNLLDPELLALADTHEFAFILTLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYELT 517 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283 G + +++L + LF L ++ T+T VL+ P ++ R Sbjct: 518 -GENFNINSVKQLGSVLFEHLKLPVKKKTKTGYSTDEAVLAELIDEHPVIEKLLEYRELY 576 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR---PSRSHEELD 340 + P NL + SR + Sbjct: 577 KLQSTY---------------------------------CEPLLNLAKKDANSRIYTNFI 603 Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q T + +P+ I + VR C A V D + IE R+LA + + Sbjct: 604 QTGTSTGRLSSKNPNLQNIPARGALAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRD 663 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + L+AF ED++ T F A Q RA+ K + L Y G+ K+A+ Sbjct: 664 EALLRAFANDEDIHARTAISIFGSAEGQN----RAVAKSINFGLIYGMGSS---KLANQV 716 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + ++ + + Sbjct: 717 SITRAEAKEYIE-----------------------------------------RYFKAFP 735 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + A + + + +L R + Sbjct: 736 TIKGFLEGIKTAAKN------------------------EGFVRTLLGRKRLFDF----- 766 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG---YDIVLTVHDEI 632 TT + Y + I Q + DI+ M+ ++L +HDE+ Sbjct: 767 -------TTATPMQTAMYEREAVNTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDEL 819 Query: 633 VCETPDT--DEFNASMLYHLMTS 653 + E D +EF A+ +M Sbjct: 820 IFEVQDGYAEEFGAAA-QKIMQE 841 >gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] Length = 898 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 108/622 (17%), Positives = 203/622 (32%), Gaps = 98/622 (15%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDP--VMP-QV 56 + +D ET S + ++ + D+ H +P + Sbjct: 325 KKIALDLETTS------------LDPFEGKIVGISIAVDEGKAFYIPIAHVGAKNIPIES 372 Query: 57 LKEALEN---TDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAV 112 +K+ L + + T+ HN F+ + IP + L N L + Sbjct: 373 VKKFLRDLFNSGKTVGGHNIKFDLKFISRLGIEPQIPSFDSMIEAYLLNPNEKKFNLDEL 432 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 LKL KM ++L+ + + +Y D ++ I Sbjct: 433 S--LKLLGHKMISYEDLVK--------DTIPLFAGDFSYIPVDTAVKYSCEDADMSLRIH 482 Query: 173 KRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 L PL E + + + G D+ + L+Q +D + L + Sbjct: 483 NLLHPLIYSNEMNELYEKIELPMILVLANLELNGVYFDIQYLNNLSQEMDKKLLALSNRI 542 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 +T G + ++L LF + L T T T VL A + Sbjct: 543 FEIT-GEAFNLNSPKQLGYILFEKLKLPSVKSTSTGAYSTDVEVLEYLANEYEIAKLILE 601 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + P R H Sbjct: 602 -------------------------------YRKIQKLKSTYVDAIPNMVNKNTKRVHAS 630 Query: 339 LDQIITHLPTSITSDPDPLQIISDC-----VRSCVIAS-EGKKLVVADLAGIEARVLAWM 392 +Q T +SDP+ + +R V +G ++ AD + IE RVLA + Sbjct: 631 FNQTGTATGRLSSSDPNLQNLPGRSDEGKEIRMAVKPQKDGWYILGADYSQIELRVLAHI 690 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + AF+ +D+++ T + F V+ +T++ R IGK++ A+ Y +A Sbjct: 691 TEDPNLINAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFAIVYGVSPY---GLA 747 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 TGL++ +++ + D + N E A ++ ++ T R K+ Q Sbjct: 748 KRTGLDVKDTKKMIEA------YLDYYKNVQEYMANIKEFAKKNGYVRTMFGR-KRDIPQ 800 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYR 571 +S+ + E + T G A K + + KD+ +++L LV+ Sbjct: 801 INSKDQNIRAEGERIAINTPIQGSAADIMKIAMIRIYERLKDEKLQSMMILQVHDELVFE 860 Query: 572 DVGNNRSYLNTTTRQLTREYTY 593 N Y ++L +E Sbjct: 861 VPENEVEY----VKKLVKEEME 878 >gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 873 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 67/417 (16%), Positives = 135/417 (32%), Gaps = 58/417 (13%) Query: 162 KGDVTVTREIFKRL-------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 DV + + L E E L + + G +D + + + + + Sbjct: 448 AQDVEALMPVLEGLMAERGLTELYRDIELPLTKVLANMEVNGITLDKGMLDEVTKSMTKQ 507 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271 L+Q+ + G + ++L LF + GL + T++ VL + P Sbjct: 508 VADLEQKAKEEA-GEDFNVNSPKQLGVILFEKLGLPIIKKTKSGYSTDVSVLEQLQGEHP 566 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + +++ S+ P P Sbjct: 567 I-------------------------------IETIMEYRTLSKLLSTYLVALHPLINPN 595 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIE 385 R H +Q+ T ++DP+ I +R + +G L+ D + +E Sbjct: 596 TGRIHTHFNQMATVTGRLSSTDPNLQNIPTRTEVGKQMRRMFVPGKGYDLLMSCDYSQVE 655 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A +AG++ + AF G+D++ T + F V VT R+ K + + Y Sbjct: 656 LRVMASIAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGIIYGISD 715 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + G+ + A + + A + E + A E ++ T R Sbjct: 716 F---GLGRQLGVPRSEAAQYIDSYFARYT------GVKEYMEGEKKKAREMGYVETLFGR 766 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 ++ H++ + + T G A K + + K+ +L Sbjct: 767 -RRYLPDIHAKNFNRRSFAERTAINTPIQGTAADIIKIAMLHVAKELKEAGVKSRVL 822 >gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] Length = 926 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 96/618 (15%), Positives = 196/618 (31%), Gaps = 99/618 (16%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKEA 60 D ET S L A V + L A + D + +L+ Sbjct: 357 SFDTETDSKDALR-------ANIVAITLCA---ESGRAFFIPLPEDEEIGKRRLDLLRPL 406 Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119 +T + V N ++ VL I + + ++A P A L Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY---GIEVRGQLFDTMIAHYLLFPDLRHNMDEMAETLL 463 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 + +L+ G + ++ R P + +Y D +T ++++RL + Sbjct: 464 GYRTIHYSDLV-----GSDKQEVHIRQVP-----LQNLADYAMEDADITWQLYERLNAML 513 Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 S+ E L + + G +D + + E +++ E+ L G Sbjct: 514 SEAGMTSLFESIEMPLVPVLVDMERSGVKLDTEVLRRTASRLGEEMQRIEDEIYRLA-GH 572 Query: 230 VSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++ T LF E + T++ T + +L ++ P Sbjct: 573 SFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIV----------- 621 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R L + G + P P + H +Q + Sbjct: 622 --------------------RLILDYRGIKKLLSTYVEALPEMRYP-DGKLHTSFNQTVA 660 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 +S+P+ I +R+ + + AD + IE R++A ++ ++ Sbjct: 661 TTGRLSSSNPNLQNIPIRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESL 720 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF GED++ T ++ + + +VT D R K + Y A ++ ++ Sbjct: 721 IQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAF---GLSERLNIS 777 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L++ A + + A ++ T R K+ R +S + Sbjct: 778 RTEAKALIEGYFASYP------GVKAYMDRSIAEAKRQGYVTTLFGR-KRFLRDINSANA 830 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNN 576 + + G A K + ++ + + L ++L L + N Sbjct: 831 VVRGYAERNAINAPIQGSAADLIKLAMIR-IHEEITERKLRSRMILQVHDELNF----NV 885 Query: 577 RSYLNTTTRQLTREYTYG 594 R+L R G Sbjct: 886 LRPEAAEVRELVRSCMEG 903 >gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99] Length = 875 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 102/660 (15%), Positives = 207/660 (31%), Gaps = 139/660 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F +D + P+++ LE+ H++ +K Sbjct: 327 YLKD-ELLKFGL-YDGEQYVVIPFDKVNEYPELVAW-LEDETTQKWVHDAKKTYIAMKRS 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 DI I + +LA P ++ V + Q ++ ++ + KG++ Sbjct: 384 ---DIAIENVVFDTMLASYIIDPSRTIEDVQSVMTHFDQTF--VQDDVSVYGKGKSFHIP 438 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 D H + + + E ++ LS E L + + G D+ Sbjct: 439 EDDILDKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDID 498 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261 + ++ E +L +++ G + ++L LF + L + T+T Sbjct: 499 TLKEMETVIQTELDQLIEQIHEQA-GEKFNINSPKQLGVILFEKLELPVIKKTKTGYSTA 557 Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + P + R S+ + L + + DG Sbjct: 558 VDVLEKLQNAHPIIDNILTYRTL-SKLQSTYVEGLQKVIWDDG----------------- 599 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EG 373 R H +Q + + DP+ I +R ++ E Sbjct: 600 --------------RIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKSTHED 645 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 ++ AD + IE RVLA + G+ +AF ED++ TT + FNVA +VT R K Sbjct: 646 YVILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAK 705 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + + G+ + ++ + + +N + A Sbjct: 706 AVNFGIVYGISDYGLSQ---SLGITRKEAQRFID------DYLNHFPGVKDYMDNIVQDA 756 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + ++ T ++RR +P + + Sbjct: 757 KQQGYVETLL-------------------------------------KRRRYIPDITSRN 779 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R R+ +N+ +Q + DI+ Sbjct: 780 F---------NLRGFA------ERTAMNSP------------------IQGSAADIIKLA 806 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666 M+ + ++L VHDE++ E P + + +M +PL E Sbjct: 807 MVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVE 864 >gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048] gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048] Length = 891 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 102/638 (15%), Positives = 202/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L N ++ ++ R ++ + + I L++A P+ Sbjct: 370 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475 Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE L EQ L + + +G VD + + + +++QE+ Sbjct: 476 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF D++ T F V +VT + R K + + Y + Sbjct: 684 PGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + + + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] Length = 879 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 113/670 (16%), Positives = 214/670 (31%), Gaps = 157/670 (23%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + +++ ++ +A + V I F+R+ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 VL + +D+P LA+ + +L + E E++ Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192 + R P + K + ++L L E L + + Sbjct: 430 YGKGAKRAVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKM 489 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G V + + V KL QE+ + G + ++L LF + GL LE Sbjct: 490 EIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548 Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T + ++L P A V L++ Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 ++ L + H Q +T + DP+ I +R Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + S E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T + + + Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 +N A + ++ T +R Sbjct: 751 AYMDNVVREAKDKGYVETLF-------------------------------------HRR 773 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R++P + + R+ R+ R+ +N+ +Q Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800 Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656 + DIL M+N KA GY ++L VHDEIV E P+ + L M + Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMEALVKETMEAAVE 860 Query: 657 WAKGLPLKAE 666 A +PL A+ Sbjct: 861 LA--VPLIAD 868 >gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1] gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1] Length = 929 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 102/639 (15%), Positives = 180/639 (28%), Gaps = 150/639 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++L+ LE+ V VA N+ ++ VL PI + A GL G Sbjct: 405 EILQPMLEDRSVMKVAQNAKYDVKVLANYGVEVAPIDDTMLLSY-ALHAGL-HNHGMDGL 462 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + K LI + +DR Y D +T K Sbjct: 463 AERYLGHTPLPIKSLIGSG----KSQITFDR------VPIADAAPYAAEDADITLRFHKL 512 Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +P E+ L + + G VD + ++ + L+ E+ Sbjct: 513 FKPKLHQVGVTKVYERLERPLVPVLARMERSGIKVDKDVLSRMSNAFAQKMAGLEAEIHE 572 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280 L G + +L LF + GL + +T +L +V + R Sbjct: 573 LA-GESFNVGSPAQLGEILFDKMGLQGGKKGKTGKYSTGADILEDLATEHDLPGRVLDWR 631 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ R H Sbjct: 632 QL-------------------------------SKLKSTYTDALQDHINADTGRVHTSYS 660 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + ++DP+ I +R +A GK LV D + IE R+LA +AG Sbjct: 661 IAGANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKVLVALDYSQIELRILAHIAGI 720 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 AF+ G+D++ T + FNV ++T D R K + Sbjct: 721 DALKDAFKDGQDIHAATASEMFNVPLEEMTPDVRRQAKAIN--------------FGVIY 766 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A ++ A +A+ F E + Sbjct: 767 GISGFGLARNLRIPRA-----EAQGFIDRYFE-------------------------RFP 796 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + ++ + ++ NL + GR + ++ Sbjct: 797 GIRTYMDDTKKFAKE--------------------------NLYVQTLFGRKIHTPEINA 830 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631 R +Q + DI+ M+ A ++L VHDE Sbjct: 831 KGPGAGFAGR----------AAINAPIQGTAADIIRRAMIRMEDAIEGIPAKMLLQVHDE 880 Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEG 667 +V E + + +M A +P+ + Sbjct: 881 LVFEVDEDATDTLIARAREVMEGAADPAVHLSVPITVDA 919 >gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S] Length = 875 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 185/622 (29%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 +D T V +++ + + + I ++LA PS A++ Sbjct: 363 SDQTKVVYDAKKTIVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEKNEQLALMED 475 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L+ + SL G + ++L Sbjct: 476 LELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLA-GEEFNINSPKQLG 534 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + L T+T T VL S ++ R Sbjct: 535 VILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864 >gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988] gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561] gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161] gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818] gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818] Length = 875 Score = 243 bits (620), Expect = 6e-62, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 185/622 (29%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 +D T V +++ + + + I ++LA PS A++ Sbjct: 363 SDQTKVVYDAKKTIVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDD----LEKNEQLALMED 475 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L+ + SL G + ++L Sbjct: 476 LELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLA-GEEFNINSPKQLG 534 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + L T+T T VL S ++ R Sbjct: 535 VILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 795 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864 >gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] Length = 889 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 96/551 (17%), Positives = 169/551 (30%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P V + ++L L EQ L + + Sbjct: 443 GVKKAIPERETFLEHLVRKVAVLVETEPVLLEKLSENGQLDLLYDMEQPLALVLAKMEIA 502 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + ++ KL QE+ L G + ++L LF + GL +E Sbjct: 503 GIKVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGELLFEKLGLPIEYTK 561 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 614 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 753 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809 Query: 603 QAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA ++L VHDEIV E P ++ + L M Sbjct: 810 QGSAADILKIAMIQLDKALVAGRYQTKMLLQVHDEIVLEVPKSELASIKKLVKQTMEEAI 869 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 870 Q--LSVPLIAD 878 >gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1] gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1] Length = 941 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 106/636 (16%), Positives = 198/636 (31%), Gaps = 149/636 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE + + N ++ VL + + + T++L+ L + L G Sbjct: 418 LKPLLEAAHILKIGQNIKYDMVVLAKY---GVDVAPYDDTMLLSY--DLDAGLGGHGMD- 471 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +L+ + ++ G C + +D+ + EY D VT +++ L+ Sbjct: 472 ELAQRHLDHGCIEFKTVCGTGKSQISFDK------VTLDVATEYAAEDADVTLRLWQLLK 525 Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E + L + + G VD L+ E T+L+ + + Sbjct: 526 GRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLSAEFSGEATRLEAAIHAEA 585 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF + GL +T ++ ++L + + Sbjct: 586 -GTPFTVGSPKQLGDILFDKMGLKGGRKGKTGVYSTDVTELERLAGDGVAI--------- 635 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 R L + ++ Q P R H + Sbjct: 636 ------------------ARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSMAVAQ 677 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++DP+ I +R +A GK ++ AD + IE R+ A MA Sbjct: 678 TGRLSSTDPNLQNIPIRSDHGRRIRDAFVAEPGKLILSADYSQIELRLAAHMADVPALKD 737 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF G+D++ T F +V +D RA K + ++ Y G A+ +A ++ Sbjct: 738 AFARGDDIHALTAQEVFG----EVNRDTRARAKTINFSILY--GISAW-GLAGRLEVSR- 789 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 E+A+ P + ++ Sbjct: 790 ---------------EEAQGMIDRYFSRFP---------------------GINHYIAAT 813 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ + RK LP RS Sbjct: 814 LGQVRDQ-----GYVSTLFGRKTH-----------------LPWIRSA------------ 839 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEIV 633 +Q R+ + I Q S DI+ M+ A ++L VHDE+V Sbjct: 840 ----KQGERQSAERQAINAPI-QGTSADIIKRAMVRMNPALAAAGLGDVKMLLQVHDELV 894 Query: 634 CE-TPDTDEFNASMLYHLMTSNPSWA--KGLPLKAE 666 E P+ E ++++ +M +PL E Sbjct: 895 FELAPEQVEPASAVIRAVMAGAAEPIVRLSVPLGVE 930 >gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478] Length = 900 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 91/527 (17%), Positives = 161/527 (30%), Gaps = 129/527 (24%) Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 + L+ E + + + G VD+ L L Q + Sbjct: 474 ARAVADLAEALDAELARIDSTALLADMELPVQRVLADMERAGIAVDLRLLAEL-QSQFAD 532 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 + + E G + ++L+ LF E G+ T+T + + L + Sbjct: 533 QIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAVQGLFEKTG 592 Query: 275 QVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 F + A R + ++ L+ ++ +DGR+ T Sbjct: 593 HPFLQHLLAHRDVTRLKVTVDGLLNSVAADGRIHTT------------------------ 628 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIE 385 +Q I +++P+ I +R + G +L+ AD + IE Sbjct: 629 -------FNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVGAGYSELMTADYSQIE 681 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++G++ ++AF TGEDL+ +R+F V +VT + R K M L Y A Sbjct: 682 MRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSA 741 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + E Sbjct: 742 YGLSTQLKIS-----------------------------------------------TEE 754 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 K Q +R + + L EQ ++G RR LP Sbjct: 755 AKVQMDQYFARFGGVRDYLMAVVEQARKDGYTSTVLGRRRY---------------LPEL 799 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 S + + RE L I Q + DI+ M+ KA Sbjct: 800 DS----------------SNRQVREAAERAALNAPI-QGSAADIIKVAMIEVDKALTEAG 842 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 ++L VHDE++ E + L M ++ +PL+ Sbjct: 843 LASRMLLQVHDELLFEIAPGERERVEALVREKMGG--AYPLDVPLEV 887 >gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] Length = 909 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 99/626 (15%), Positives = 197/626 (31%), Gaps = 144/626 (23%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC------FNLDIPIHRWICTLVLARSNG 104 MP+ + + +E+ D+ + N + L+ DI I +I + Sbjct: 381 ESMPKEIVDLIEDEDIEKIGCNIKSDYINLRPYGIRLGKIGFDISIAEYIIDSKTST--- 437 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + A K +KM ++L+ + K + +E + + Sbjct: 438 ---SYDFDVIASKYIYKKMTSEEDLLGKGAKAKKYEDIEKEDLDKFAIGIMNTLSGV--- 491 Query: 165 VTVTREIFKR--LEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 V R+I K +E L E L + + G VD L + + L+ + Sbjct: 492 VPKMRQIIKDDDMEKLLYDVEIPLIEVLGDMEYIGIHVDKKTLDELGVLFNDRIKYLETK 551 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFN 278 + ++ G + ++L LF + L + T+T VL + P Sbjct: 552 IYDIS-GEKFNINSPKQLGLILFEKLELPVIKKTKTGYSTNAEVLEKLRDKHPI------ 604 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 + + + P R H Sbjct: 605 -------------------------IDMITDYRTVVKLKSTYVEGINNLINPLDGRIHSS 639 Query: 339 LDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q I ++DP+ I + +R +A +G KLV AD + +E RVLA M+ Sbjct: 640 FNQAIATTGRISSTDPNMQNIPVRTDLGRQLRRVFVAGQGSKLVDADYSQVELRVLADMS 699 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ ++AF+ G D++ T ++ F V +V+ + R+ K + + Y +A Sbjct: 700 GDEDMIEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGIIYGKSDF---GLAK 756 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 +++ ++ A Sbjct: 757 DLDISIAKAKEYIENYFAR----------------------------------------- 775 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ + + E+ + I +RR +P + K N + Sbjct: 776 FPKIKGFMDHIVSDAEE--KGYSTTIFGRRRYIPEI---KSSNFV------------EKN 818 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLT 627 R+ +N +Q + DI+ M+N + ++L Sbjct: 819 RGIRAAMNAP------------------IQGSAADIIKIAMVNVHNRLEEEGLKSNLILQ 860 Query: 628 VHDEIVCETPDTDEFNASM-LYHLMT 652 VHDE++ E+P + + L M Sbjct: 861 VHDELIVESPIEEVERVRVLLKEEME 886 >gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] Length = 882 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 113/640 (17%), Positives = 190/640 (29%), Gaps = 147/640 (22%) Query: 42 VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 VEL + D +VL + LE+ H + I + LA Sbjct: 361 VELGELSADEE--KVLVQWLESPA-PKYFHAAK---AAFHMLAGRGIELDGLAHDTALAA 414 Query: 102 SNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 P + + + + E ++ L D Sbjct: 415 YILRPGQRTYELSDVYQRHLQKSLGAATEQMSLL----DSSSLVD---------QAAAIM 461 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +T + E + E L + + G VDV + T + + + Sbjct: 462 ELAEKLTAELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 521 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + L + ++L+ LF + T+T ++L + F + Sbjct: 522 RSARELAGDEKLNLNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLD 581 Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + A R L L++ + DGR+ H Sbjct: 582 HLLAHREYQKMKTTLEGLIKTVQPDGRI-------------------------------H 610 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390 +Q +T +++P+ I +RS I EG ++L+ AD + IE RV+A Sbjct: 611 TTFNQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMA 670 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++A++ GEDL+ +R F+V QVT + R K M L Y A + Sbjct: 671 HLSADPGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQ 730 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +G K Sbjct: 731 Q-----------------------------------------------LGIPAGEAKSIM 743 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + L EQ ++G RR LP Sbjct: 744 ESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRY---------------LPE------ 782 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI----VL 626 LN+ R L RE L I Q + DI+ M+ +A D+ +L Sbjct: 783 ---------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALRDMKSRVLL 831 Query: 627 TVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 VHDE+V E P + +L M S +PL+ Sbjct: 832 QVHDELVVEVAPGEADQVREILEREMDSAIE--LNVPLEV 869 >gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B] gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B] Length = 892 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 115/710 (16%), Positives = 205/710 (28%), Gaps = 172/710 (24%) Query: 1 MATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVH------ 49 + L + E T S ID + L + H Sbjct: 307 LKKLAEEIEKYKTFS-IDTETTSLDP----FEAKLVGISISTMEGKAYYIPVSHFGAKNI 361 Query: 50 -DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS- 107 ++ + LK+ L+ D IV N F+ + K ++ + ++A P Sbjct: 362 SKSLIDKFLKQILQEKDYNIVGQNLKFDYEIFK---SMGFSPNVPHFDTMIAAYLLNPDE 418 Query: 108 -ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 +LK KM EL+ N EY D Sbjct: 419 KRFNLEELSLKYLGYKMISFDELVNE-------NVPLFGND-FSYVPLERAVEYSCEDAD 470 Query: 167 VTREIFKRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 VT IF++L + E L + + G D L++ + Sbjct: 471 VTYRIFRKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEEYLKELSKKYQEKMD 530 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272 + +++ + G + ++ LF + + T T T VL K Sbjct: 531 GIKEKVFEIA-GETFNLNSSTQVAYILFEKLNIAPYKKTATGKFSTNAEVLEELSKEHEI 589 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 A + + + P + Sbjct: 590 AKLLLE-------------------------------YRKYQKLKSTYIDSIPLSINRKT 618 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEA 386 +R H Q T +S+P+ + +R V ++ AD + IE Sbjct: 619 NRVHTTFHQTGTSTGRLSSSNPNLQNLPTRSEEGKEIRKAVRPQRQDWWILGADYSQIEL 678 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RVLA ++ ++ LKAF+ D++ T A+ F V+ V++ R +GK++ A+ Y Sbjct: 679 RVLAHVSKDENLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFAIIYGVSPY 738 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 K IG + Sbjct: 739 GLSK-----------------------------------------------RIGLSVSET 751 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 KK ++ L + ++ + G + +RR +P + Sbjct: 752 KKIIDNYFRYYKGVFEYLKRMKDEARKKGYVTTLFGRRRYIPQL---------------- 795 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619 RS ++ R +Q + DI+ M+N Sbjct: 796 -----------RSKNGNRVQEGERI------AVNTPIQGTAADIIKIAMINIHNRLKKEN 838 Query: 620 AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGY 668 ++L VHDE+V E PD + EF ++ M + +PLK + Y Sbjct: 839 LSSKMILQVHDELVFEVPDNELEFVKDIVKDEMENAVK--LDVPLKVDVY 886 >gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614] gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614] Length = 889 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 101/624 (16%), Positives = 186/624 (29%), Gaps = 140/624 (22%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L + V H++ L A +P+ L+ P + ++ Sbjct: 374 LADPKRPKVLHDAKGPMLALAAW---GLPLAGLDRDTALSAYLARPDQRSYDLADLTVRY 430 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 +++++G + + L DRN + E L Sbjct: 431 LKRELKQGGADDGQLS----LDGLDDRNAGEIEMLHARAVLDLAAALDDELEERGGTRLL 486 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L L + G VD L E ++ + G + ++ Sbjct: 487 NDIELPLVDLLAKMEQTGIAVDTDHLEALESHFAAEVRDAAEQAFGVI-GKEINLGSPKQ 545 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLV 295 L+ LF E G+ T+T + + L + F + R + L+ Sbjct: 546 LQAVLFDELGMPKTKRTKTGYTTDADALQALYVKTEHPFLLHLLRHRDVSRLRQTIEGLL 605 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + + DGR+ T +Q I +++P+ Sbjct: 606 KTVAGDGRIHTT-------------------------------FNQTIAATGRLSSTEPN 634 Query: 356 PLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +R + G + L+ AD + IE R++A ++ + ++AF++G D + Sbjct: 635 LQNIPIRTEEGRRIREGFVVGPGYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFH 694 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T AR F+V VT + RA K M L Y A + G+ + L Sbjct: 695 SITAARVFDVPADDVTVEMRAKIKAMNYGLAYGLSAF---GLGQQLGIEPSEARGL---- 747 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + L E Sbjct: 748 ----------------------------------------MDEYFQTFGGIRDYLGGVVE 767 Query: 530 QTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + + G I +RR +P + T+ + Sbjct: 768 EARKAGFTETIWGRRRYLPDL--------------------------------TSDNRQR 795 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642 RE L I Q + D++ M+N +A ++L VHDE+V E ++ Sbjct: 796 REMAERMALNAPI-QGSAADLIKIAMLNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQE 854 Query: 643 NASMLY-HLMTSNPSWAKGLPLKA 665 +L M + A +PL Sbjct: 855 PLEVLVREQMGAAADLA--VPLDV 876 >gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8] gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth polymerase 1 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8] Length = 834 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 83/452 (18%), Positives = 152/452 (33%), Gaps = 68/452 (15%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191 L D + R +G D + +RL E++L +L Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLS 440 Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + G +DVA L+ + E +L++E+ L G + ++L+ LF E Sbjct: 441 RVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499 Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L T+ T +R VL + ++ P ++ +R Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359 ++ P PR R H +Q T +SDP+ I Sbjct: 541 ------------TKLKNTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588 Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +R +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V P V R K + + Y A +++ + + E + Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + R E E + ++ T R ++ ++RV + + G Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A K V L ++ ++L L Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%) Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604 K + + L GR Y + G R + R + RE VQ Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 + D++ M + G ++L VHDE++ E P + L M A Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816 Query: 660 GLPLKAE 666 +PL+ E Sbjct: 817 -VPLEVE 822 >gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27] gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27] Length = 834 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 83/452 (18%), Positives = 152/452 (33%), Gaps = 68/452 (15%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191 L D + R +G D + +RL E++L +L Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLS 440 Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + G +DVA L+ + E +L++E+ L G + ++L+ LF E Sbjct: 441 RVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499 Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L T+ T +R VL + ++ P ++ +R Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359 ++ P PR R H +Q T +SDP+ I Sbjct: 541 ------------TKLKNTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588 Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +R +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V P V R K + + Y A +++ + + E + Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + R E E + ++ T R ++ ++RV + + G Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A K V L ++ ++L L Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%) Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604 K + + L GR Y + G R + R + RE VQ Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 + D++ M + G ++L VHDE++ E P + L M A Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816 Query: 660 GLPLKAE 666 +PL+ E Sbjct: 817 -VPLEVE 822 >gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus] Length = 889 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 108/640 (16%), Positives = 183/640 (28%), Gaps = 147/640 (22%) Query: 42 VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 VEL D + +D H + I + LA Sbjct: 368 VELGDLSAED---DKALAQWLASDTPKYFHEAK---AAFHMLAGRGIELAGIAHDTALAA 421 Query: 102 SNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 P + + + E ++ + L D Sbjct: 422 YLLRPGQRTYALADVYQRHLQKTLSAATEQLSLL----DNSSLVD---------QAAAIM 468 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +T + E + E L + + G VDV + T + + + Sbjct: 469 ELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 528 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + L + ++L+T LF L T+T ++L + F + Sbjct: 529 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 588 Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + A R L L++ + DGR+ T Sbjct: 589 HLLAHRKYQKMKTTLEGLIKTVQPDGRIHTT----------------------------- 619 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390 +Q + +++P+ I +RS I +G +L+ AD + IE RV+A Sbjct: 620 --FNQTVASTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMA 677 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++A++ GEDL+ +R F+V QVT + R K M L Y A + Sbjct: 678 HLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQ 737 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +G K Sbjct: 738 Q-----------------------------------------------LGIPAGEAKSIM 750 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + L + Q ++G RR LP Sbjct: 751 ESYFERFGGVKKYLDEVVAQARKDGYTATLFGRRRY---------------LPE------ 789 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVL 626 LN+ R L RE L I Q + DI+ M+ +A ++L Sbjct: 790 ---------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALQGMKSRVLL 838 Query: 627 TVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 VHDE+V E P + +L M S +PL+ Sbjct: 839 QVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEV 876 >gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028] Length = 876 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 105/664 (15%), Positives = 201/664 (30%), Gaps = 147/664 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F + + D + L + LE+ + T + +++ + V Sbjct: 328 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++I ++LA P ++ V + L Q K+ I F KG+ H Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 439 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + H VT T E + + E L E L + + + G Sbjct: 440 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQNELLKDLELPLARILSEMEEIGIY 495 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 D+ + + + L + + G + ++L LF L + T+T Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554 Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 VL + P + R A + Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 583 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 + + R H +Q + + DP+ I +R Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 642 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 S+ ++ AD + IE RVLA + ++ AF G D++ T + FNV QV R Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMR 702 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + + G+ + ++ + + + Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 753 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A ++ T +RR +P + Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + RS R+ +NT +Q + DI Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662 + M+ TK ++L VHDE++ E P ++ E + + +M +P Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861 Query: 663 LKAE 666 LK + Sbjct: 862 LKVD 865 >gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] Length = 524 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 100/551 (18%), Positives = 171/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 78 GVKKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIA 137 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + +V +L QE+ L G + ++L LF + GL LE Sbjct: 138 GIKVKKETLLEMQAENEVVIEQLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 196 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + DG++ Sbjct: 197 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILDDGKI------ 249 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 250 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 284 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 285 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 344 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +A+ G++ + T Sbjct: 345 VTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKKAKAYIDTYF------------- 388 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 389 -------------------------------ERFPGIKNYMEEVVREARDKGYVETLFKR 417 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 418 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 444 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 445 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAI 504 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 505 Q--LSVPLIAD 513 >gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] Length = 953 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 111/632 (17%), Positives = 198/632 (31%), Gaps = 123/632 (19%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L+ + +VAHN F+ + L LD+P + T + A G +LK + A Sbjct: 408 LQPLFSDPQKAVVAHNGKFDMSALS-LIGLDVPHLSF-DTAIAAALLGKRQSLKDLAFAE 465 Query: 117 KLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + M + LI K T + + A Y DV +T + Sbjct: 466 LRDADDRPIEMTRIETLIGTGKKQITMDQV----------AIEQVTPYASADVDMTARLL 515 Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 P E L + + G +D A Q++ +++Q Sbjct: 516 ALFMPQLGAIPAVREVFEQIEMPLSPVLMRMEACGIGLDRAQLVQQGQVLGQSLREIEQH 575 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 + G + L LF+ L + L T V++ Sbjct: 576 IADF-VGEPLNINSRFDLNDLLFIRLKLPTAN---------LKRLAGTTRSGGAVYSVNA 625 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ + G + L++ S+ + R H + Q Sbjct: 626 ETLED--------LQTHDQSGIVAMILRYRRLSKLKSTYVDALIELINQQTGRVHTQYRQ 677 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 I + P+ I +R +A G L+ AD + IE RVLA + + Sbjct: 678 IGAETGRLSSDSPNLQNIPVRSEEGREIRRAFVARPGHVLMTADYSQIELRVLAHITADP 737 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++ F+TG+D++ T AR F++ +V+K+QR I K+ + Y + +A+ T Sbjct: 738 ALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIYGISSF---GLAARTA 794 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 L+ ++ N ++ +++ E Sbjct: 795 LSRTEAQQMI--NGLFAQYPGLKSYIERTLER---------------------------- 824 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + + + R+R L G R Sbjct: 825 ------------VKAVGYVETLFGRRR--------------YFRELQDGGVTGPRRSAFE 858 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 R N + G + I A+ R E + A ++L VHDE+V E Sbjct: 859 REATNAGIQ---------GTAADLIKLAMIR---LEQALIAGGYQAKMLLQVHDELVLEV 906 Query: 637 PDTDEFNASML-YHLMTSN-PSWAKGLPLKAE 666 P+ + + L MT P A L + E Sbjct: 907 PEDERDAVAQLVCDTMTQVYPDLAVPLEVNVE 938 >gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] Length = 888 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 103/643 (16%), Positives = 206/643 (32%), Gaps = 145/643 (22%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103 D + + LK+ L++ V N+ + L L IP+ L+LA Sbjct: 358 VDLLKEEP----LKDLLQSDSVKKNVFNAKAQIVGLHR---LGIPLENINFDLLLASYLL 410 Query: 104 ---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + L V + + +E E+ + K D +H E Sbjct: 411 NTNDNSNDLGQVAQEHGYDDVRTDE--EVYGKGAK--RAVPDDDETFFSHLATKARAIEQ 466 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + D+ + K+ + E L + + G VD + + ++++ Sbjct: 467 LRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIES 526 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277 ++ G + ++L LF + L + T+T VL +P Q+ Sbjct: 527 QIYQEA-GEEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQIL 585 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R A + + L++ ++S+ + H Sbjct: 586 EYRQIAKLQSTY-ITGLLKVIHSND------------------------------QKIHT 614 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391 Q +T + DP+ I +R + S EG ++ +D + +E RVLA Sbjct: 615 RYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAH 674 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQK 450 + G++ + F+ GED++ +T R F++AP ++ ++ R K + + Y Sbjct: 675 ITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDY---G 731 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A ++ ++ + E+ + + E+ + Sbjct: 732 LAQRIHVSRAEAHEFIQ--NYFHEFPGVKKYINDTIAFAKENGYVE-------------- 775 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 I +RR +P ++ K + RS Sbjct: 776 ---------------------------TITHRRRYLPDIHAKSF---------NKRSFA- 798 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDI 624 R+ +NT +Q + DI+ M+ + Sbjct: 799 -----ERTAMNTP------------------IQGSAADIIKIAMIRMQDELEKRHLKAKM 835 Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 +L +HDE+V E P + S L +M S +PLK + Sbjct: 836 ILQIHDELVFEAPKEEIPVLSELVPKVMDSAVK--LDVPLKVD 876 >gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] Length = 907 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 114/684 (16%), Positives = 210/684 (30%), Gaps = 171/684 (25%) Query: 20 GICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAH 71 G Y E D V+ A+ + + D ++ L +A L + VT V Sbjct: 347 GYAIYLENLSKNYHDSEVVAVAW-TNGSEIFTGDA---RLLQADLFKAWLSDDQVTKVVF 402 Query: 72 NSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 ++ + +L +D + + L + + L V + + + + Sbjct: 403 DAKRTKVMLD-YLGIDFAGVVDDVLIGSYLLHARDNSNDLAEVAR--EFDMDDLSYDEAI 459 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------- 181 + K R P E E+ V + + + + P Sbjct: 460 YGKGAK---------RGVPEEAETM---YEHIARKVHIIARLQETIRPQLEANQMDDLYQ 507 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VD T+ L+ ++ G + ++L Sbjct: 508 KIELPLALVLANLEILGISVDKQQLVTMQAEFKEIIAGLEADIWKEA-GHEFNVNSPKQL 566 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF E GL + T+T T Q VL P + N R + + L E Sbjct: 567 GVILFEEMGLPVIKKTKTGYSTAQDVLEKLAGQAPIIDLILNYRQLNKLQSTY-VEGLQE 625 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ D + H Q +T ++DP+ Sbjct: 626 FIHED-------------------------------GKIHSRFQQTLTSTGRLSSADPNL 654 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + S E + +D + IE RVLA ++G++ +AF ED++ Sbjct: 655 QNIPIRSEEGRSIRKAFVPSHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHT 714 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 +T + +NV +VT + R K + + Y + + + Sbjct: 715 STAMKVYNVPKEEVTSNMRRNAKAVNFGIVYGISDYGLSQNLNISR-------------- 760 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +A+NF EN+P + + E+ Sbjct: 761 -----PEAKNFIDTYLENYP----------------------------GVQAYMKDVVEK 787 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTR 589 E+G RR LP ++ + R+ +NT Sbjct: 788 AKEDGYVETLFNRRRY---------------LPDLKAKNFNVRSFAERNAMNTP------ 826 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+ +A +++L +HDE+V E P + Sbjct: 827 ------------IQGTAADIIKIAMVKMDEALKEHKLKANLLLQIHDELVFEVPKDEIET 874 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAE 666 L +M S +PL+ E Sbjct: 875 LEKLVTEIMGSAAQ--LDVPLEIE 896 >gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] Length = 891 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 104/654 (15%), Positives = 197/654 (30%), Gaps = 138/654 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ F DD + D L E LE+ +++ LDI Sbjct: 348 ILKFGLYTDD--THIVINAEDIKQHSDLIEWLEDAQTVKTVYDAKKTYVAAHR---LDIN 402 Query: 90 IHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 I ++LA P A+ V + L Q K+ ++ + KG+ H D Sbjct: 403 IQNVQFDVMLASYIIDPSRAIDDVKSVVSLYGQ--NYVKDNVSIYGKGKKHHIPEDNILN 460 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 H + K + + + ++E L+ E L + + + G DV + Sbjct: 461 EHVASITEAIASAKPLMEEQLKEYNQVELLADLELPLAKILSEMEEIGIYTDVNDLKHME 520 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265 + + L + + G + ++L LF L + T+T VL Sbjct: 521 NEIQEKLDVLIKNIHE-AAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQ 579 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K P + R S+ Sbjct: 580 LKGEHPIIEHILEYRQL-------------------------------SKLQSTYVEGLQ 608 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVA 379 + + +R H +Q + + DP+ I +R SE ++ A Sbjct: 609 K-VISKDNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPTSEDSVILSA 667 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA + ++ +AF G D++ T + FNV V R K + + Sbjct: 668 DYSQIELRVLAHITQDESLKEAFIHGHDIHTATAMKVFNVEANDVDSLMRRQAKAVNFGI 727 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + + G+ + ++ + + + + A ++ Sbjct: 728 VYGISDYGLSQ---SLGITRKKAKAFID------DYLASFPGVKQYMSDIVKDAKAQGYV 778 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T +RR +P + + Sbjct: 779 ETLL-------------------------------------HRRRYIPDITSRNF----- 796 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617 + RS R+ +NT +Q + DI+ M+ Sbjct: 797 ----NLRSFA------ERTAMNTP------------------IQGSAADIIKLAMVKFNE 828 Query: 618 ----TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 T ++L VHDE++ E P ++ E + + +M + +PLK + Sbjct: 829 KVKNTNYHAKLLLQVHDELIFELPKSEVEDFSEFVEEIMENALD--LDVPLKVD 880 >gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] Length = 878 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 97/556 (17%), Positives = 166/556 (29%), Gaps = 148/556 (26%) Query: 143 YDRNKPNHREAWRLFGEYCKGDVT--VTREIFKRLEPLSSK--------------EQELW 186 DR P + + C D + R ++ L PL + E L Sbjct: 424 LDRILPEEPKK-KKGEAVCNRDFSCAAVRTLYD-LYPLLDEKLKEASLDHLYEDLELPLA 481 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 Y + G VD+ + L+QE+ SL G + ++L LF + Sbjct: 482 YTLARMERTGVAVDLQALDAMKTEFRERIGALEQEIYSLA-GEEFNLNSPKQLGQILFDK 540 Query: 247 TGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 GL T+T +VL ++ R + L L + +N Sbjct: 541 LGLPALKKTKTGYSTDAKVLEELAPHHEVVAKILKYRTLI-KILTTYLEGLSKLVNE--- 596 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 + R H +Q +T +++P+ I Sbjct: 597 ---------------------------QTGRIHTHFNQTVTATGRLSSTEPNLQNIPIRL 629 Query: 361 --SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 VR + + G L+ AD + IE R+LA ++ + + +F ED++ T A F Sbjct: 630 EEGRRVRRAFVPGKKGNLLLSADYSQIELRILAHVSKDPVLIDSFRKEEDIHRRTAAEVF 689 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 V P VT + R K + + Y + ++ Sbjct: 690 GVLPEDVTPELRDRAKAVNFGIVYGISDYGLSQQLKI-------------------PRQE 730 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 A+ + E P + + +H E +NG Sbjct: 731 AKEYISRYFERLP----------------------------GVRDFIHNVVEDAKKNGYV 762 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGK 596 RR LP + + R+ +NT Sbjct: 763 TTLLNRRRY---------------LPDINAKNFNQRSFAERTAMNTP------------- 794 Query: 597 LTENIVQAVSRDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDEFNASML-YHL 650 +Q + DI+ M+ +A +VL VHD++V E + N + L Sbjct: 795 -----IQGTAADIIKLAMLRVEEALAGMDDVQMVLQVHDDLVFEVKEESLINVARLVKKQ 849 Query: 651 MTSNPSWAKGLPLKAE 666 M S A +PL + Sbjct: 850 MESALELA--VPLTVD 863 >gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] Length = 908 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 104/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + ++ S L R + N Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129] gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae] Length = 899 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 87/486 (17%), Positives = 151/486 (31%), Gaps = 127/486 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G CVDVA I + + + L + ++L Sbjct: 497 EMELPLVGVLARMEATGICVDVATLREQRDIFVEQVKEEESAARELAGDETLNLSSPKQL 556 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR---SAVLKLNTLVE 296 + LF GL T+T + L + F + + A R L+ L++ Sbjct: 557 QVVLFDTLGLPKTKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHREFQKMKTTLDGLIK 616 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A+ DGR+ T +Q + +++P+ Sbjct: 617 AVGDDGRIHTT-------------------------------FNQTVASTGRLSSTEPNL 645 Query: 357 LQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +RS + +G K L+ AD + IE RV+A ++ + ++A++TGEDL+ Sbjct: 646 QNIPVRTPAGRKIRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTGEDLHN 705 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 ++ F+V QVT + R K M L Y A + Sbjct: 706 FVGSKVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQ------------------- 746 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + K R + L Q EQ Sbjct: 747 ----------------------------LNIPAGEAKVIMESYFERFGGVKRYLDQVVEQ 778 Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 ++G + + +RR +P L S + + R+ LN Sbjct: 779 ARKDGFTSTLFGRRRYLP-------------ELSSDNRVARENA--ERAALNAP------ 817 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+ ++L VHDE+V E ++ Sbjct: 818 ------------IQGTAADIIKIAMLRVDARLTAENCQSRVLLQVHDELVLEVASGEQEK 865 Query: 644 ASMLYH 649 L Sbjct: 866 VQQLVE 871 >gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621] gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621] Length = 891 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 102/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L N ++ ++ R ++ + + I L++A P+ Sbjct: 370 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 475 Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE L EQ L + + +G VD + + + +++QE+ Sbjct: 476 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 PGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + + + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a] Length = 908 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 104/690 (15%), Positives = 214/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498 Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + ++ S L R + N Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245] gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245] Length = 943 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 104/603 (17%), Positives = 187/603 (31%), Gaps = 102/603 (16%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-------WDCVHDPVMPQVLK 58 ID ET S + L F P E + + LK Sbjct: 373 IDTETTS------------LDTFQAELAGISFSLKPKEARFIYFGKGGLDIGNTL-ERLK 419 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALK 117 LEN D+ N ++ VLK N I + +LA P A + Sbjct: 420 PVLENPDIRKTGQNLKYDLLVLK---NYGISLTPVAFDTMLASYVLDPEEKHNLDDLAAR 476 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 S + EL A K TH +Y D + + + E Sbjct: 477 HLSIRTTTFDELTAGEGKKRTH---------ILDVPSAQLSDYGCQDADIALRLQEVFEA 527 Query: 178 LSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++Q L +L +TI +G +D A +V+ + L +++ + Sbjct: 528 KLLEDQRLLHLCRTIEFPLVEVLAGMEYQGISIDTAHLEKTADLVNAQIGDLSRKIHA-A 586 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF GL + T+T VL L P + Sbjct: 587 AGTPFNLDSPKQLSGILFNTLGLPTKKTTKTGFSTNVEVLEELAPLHPIIGDLLE----- 641 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + P P R H +Q + Sbjct: 642 --------------------------YRSLQKLKTTYIDALPKMINPGTGRLHTSFNQHV 675 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 T +S+P+ I +R I S ++ AD + IE R+ A ++G++ Sbjct: 676 TATGRLSSSNPNLQNIPVRTTAGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDEK 735 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF ED++ T F+ ++T D R K + + Y ++ + Sbjct: 736 LIEAFRNREDIHRATAKVIFST--DEITSDMRRKAKEVNFGVLYGIQPY---GLSKRLNI 790 Query: 458 NLNTFAHLVKTN--SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + +++T P + E ++ T R ++ +S Sbjct: 791 PQSEAKAIIETYTTKYPGLFHALLEII--------EEGKRKGYVTTLLGR-RRYIPDLNS 841 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRR-DVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + +A T G A K ++ +KK+ N +++L L++ Sbjct: 842 RNGNIQKAAGRAAMNTPIQGTAADIIKCAMNLCDRQIKKNNMNSVMLLQVHDELLFETTA 901 Query: 575 NNR 577 + Sbjct: 902 EEK 904 >gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] Length = 896 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 107/608 (17%), Positives = 204/608 (33%), Gaps = 88/608 (14%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVL 57 ID ET S + + ++ + D+ H+ + + L Sbjct: 327 IDLETSS--------LDPHC--AKIVGVSISIDEGSGYYIPIAHESDGWQADRDYVLKNL 376 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEA 115 K+ LE+ I+ N F+ +VL + +LA P A A Sbjct: 377 KKLLEDRSTKIIGQNLKFDYSVLAVNGIHPVVPD---FDTMLAAYLLSPDAKRFNLDELA 433 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 +K K + ++L+ ++ D K EA R E + ++ + K++ Sbjct: 434 MKFLGYKTIKFEDLMK------KNQLGDDFTKVPLEEAARYSVEDADISLRLSSVLRKKI 487 Query: 176 EPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + + G DV L++ K+ +EL LT G Sbjct: 488 YEQELEEIFRKVELALIPVLADLELNGVYFDVPSLKNLSEKYGKILDKILEELFDLT-GE 546 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++ LF GL T+ +T L P ++ Sbjct: 547 QFNPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSADALEEIADEHPAVQKLL-------- 598 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + P R H Q T Sbjct: 599 -----------------------DYRKYQKLKSTYLDSLPELVNKVTGRIHTSYHQTGTG 635 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ + +R CVI + G K+V AD + IE R+LA ++ ++ L Sbjct: 636 TGRLSSSNPNMQNLPIRDEEGKEIRKCVIPQKKGWKIVSADYSQIELRILAHLSQDKQLL 695 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ +D++ T + + + ++V+++QR IGK++ ++ Y + +AS + Sbjct: 696 DAFKNDKDVHSLTASNLYGIKESEVSEEQRRIGKMINFSIIYGISSY---GLASRLRIPT 752 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 N ++ ++ + + + F R A E F+ T R K+ Q ++ Sbjct: 753 NVAEEMI--SNYFKAFPEVRAFIRDTIS----EAKEKCFVRTMFGR-KREIPQFKTKNRN 805 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRS 578 + E + T G A K + + + K+K +L +VY Sbjct: 806 VIQEGERIAINTPIQGTAADIMKMAMIKIYNLLKEKEMESFAILQVHDEMVYEAPEKEIE 865 Query: 579 YLNTTTRQ 586 L ++ Sbjct: 866 KLKEILKE 873 >gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] Length = 877 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 102/638 (15%), Positives = 204/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L N ++ ++ R ++ + + I L++A P+ Sbjct: 356 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPGLEVVAEHVARKVHVLYDVKQT 461 Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE L EQ L + + +G VD + + + +++QE+ Sbjct: 462 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF + L + T+T VL + + R Sbjct: 522 LA-GTEFNINSPKQLGVILFEDLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 PGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + + + A + ++ T R R+ Sbjct: 727 GITRKAAAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIP 775 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 776 EITS----------------------------------------------RNFNLRSF-A 788 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 789 ERTAMNTP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVH 830 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 831 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 866 >gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126] gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126] Length = 879 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 112/670 (16%), Positives = 217/670 (32%), Gaps = 157/670 (23%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + +++ ++ +A + V I F+R+ Sbjct: 325 FEILGDNYHTEPIIGFAWGNDK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSK 379 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 VL + +D+P LA+ + +L + E E++ Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192 + R P + K + + ++L L E L + + Sbjct: 430 YGKGAKRAVPEKEVLLSHLAKKVKVLQVAKQVMLEKLAEHGQSELLFDMELPLANVLAKM 489 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G V + + V KL QE+ + G + ++L LF + GL LE Sbjct: 490 EIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMA-GEEFNINSPKQLGVILFEKMGLPLE 548 Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T + ++L P A V L++ Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 ++ L + H Q +T + DP+ I +R Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + S E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T + + + Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYIDT------YFERYPGIK 750 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 +N A + ++ T +R Sbjct: 751 AYMDNVVREAKDKGYVETLF-------------------------------------HRR 773 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R++P + + R+ R+ R+ +N+ +Q Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800 Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656 + DIL M+N KA GY ++L VHDEIV E P+ + +++ M + Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMKALVKETMEAAVE 860 Query: 657 WAKGLPLKAE 666 A +PL A+ Sbjct: 861 LA--VPLIAD 868 >gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] Length = 875 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 105/632 (16%), Positives = 200/632 (31%), Gaps = 140/632 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113 + AL+N D +++ + + LDI I C ++ + + V Sbjct: 353 ESFINALQNEDTKKYVYDAKETKVLFSR---LDIDIKGIEHCVMLASYLLDPALKIIDVA 409 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172 ++ ++ E E+I F KG N H E + E+ Sbjct: 410 QSAQMQGIYYVESDEMI--FGKGAKMHIPERTNLFKHIASEVNAIHEVSALQIRKLNELK 467 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + LE L++ E L + + +G V+ + Q + +L + G + Sbjct: 468 Q-LELLTALELPLSLVLADMEMQGIKVNRQTLQEMQQEIQSRLDELITRIHEHA-GSTFN 525 Query: 233 SRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L LF + L +T T VL S P + R S+ Sbjct: 526 INSPKQLGVVLFEDLKLDSPKKKKTKTGYSTAVDVLESLAGKHPIIEDILLYRTL-SKLQ 584 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L + + D ++ H +Q+I Sbjct: 585 STYVEGLQKLIGDDDKI-------------------------------HTRFNQVIAQTG 613 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R + SE + AD + IE RVLA + G++ L+A Sbjct: 614 RLSSIDPNLQNIPVRLDEGRKIRKAFVPSEPNSVIFAADYSQIELRVLAHITGDKGMLEA 673 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F G D++ T + FNV +VT D R K + + Y + + G+ Sbjct: 674 FNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKD 730 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + ++ + + + A + ++ T Sbjct: 731 AQAFIDN------YLESFPDVKAYMHDIIQEAKQQGYVTTLLN----------------- 767 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +RR +P + + + R R+ +N Sbjct: 768 --------------------RRRYIPDITSRNF---------NLRGFA------ERTAMN 792 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 T +Q + DI+ M++ T ++L VHDE++ E Sbjct: 793 TP------------------IQGSAADIIKLAMVHYNEQVKETDFKAKLLLQVHDELIFE 834 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 P + E + + H+M + +PL+ E Sbjct: 835 VPKDELEAFSLFVKHVMENALE--LKVPLEVE 864 >gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208] gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3] Length = 879 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 91/622 (14%), Positives = 189/622 (30%), Gaps = 135/622 (21%) Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120 E+ +S L +++ +LA P + V K Sbjct: 365 EDESKKKWVFDSKRSVVAL-RWQGIEL--KGTEFDALLAAYIINPGNSYDDVASVAK--E 419 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + + A + KG H ++ +H + + + +LE Sbjct: 420 YGLNIVSKDEAVYGKGAKHAVPAEKELADHLARKAAAVNSLRDKLLHALKENNQLELYED 479 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + + G VDV + + + + + ++++ + G + ++L Sbjct: 480 LELPLALILGEMESMGVKVDVERLKRMGEELRAKLKEYEEKIHDIA-GEPFNINSPKQLG 538 Query: 241 TWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL + T+T VL + R + + L++ Sbjct: 539 VILFDKLGLPVVKKTKTGYSTSADVLEKLADKHDIVAYILQYRQ-IGKLQSTYIEGLLKV 597 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 D + H +Q +T ++DP+ Sbjct: 598 TRKD------------------------------SHKVHTRFNQALTQTGRLSSTDPNLQ 627 Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + SE + AD + IE RVLA ++ ++ ++AF D++ Sbjct: 628 NIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTK 687 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V+ +VT+ R K + + Y + G+ + Sbjct: 688 TAMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAGAFID---- 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ + E + A + ++ T Sbjct: 741 --RYLESFPGVKAYMEESVQEAKQKGYVTT------------------------------ 768 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + ++RR +P + + + RS R+ +NT Sbjct: 769 -------LMQRRRYIPELTSRNF---------NLRSFA------ERTAMNTP-------- 798 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M++ ++L VHDE++ E P + Sbjct: 799 ----------IQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKILE 848 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 L +M +PLKA+ Sbjct: 849 KLVPEVMEHALD--LDVPLKAD 868 >gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] Length = 889 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 98/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EPLSSKEQELWYLDQTINDR 195 + P V + ++L + L EQ L ++ + Sbjct: 443 GVKKAIPERETFLEHLARKVAVLVETEPVLLEKLCENGQLDLLYEMEQPLAFVLAKMEIA 502 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + ++ KL QE+ L G + ++L LF + GL +E Sbjct: 503 GIKVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGELLFEKLGLPIEYTK 561 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 614 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 615 -------------------------HTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 710 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKDAKAYIDTYF------------- 753 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 810 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKKLVKQTMEEAI 869 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 870 Q--LSVPLIAD 878 >gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1] gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1] Length = 908 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 101/684 (14%), Positives = 212/684 (30%), Gaps = 158/684 (23%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----LKEA--LENT 64 + ID + Y +I + F + + +++ L + Sbjct: 342 YTSIDTETSSLDTY--TAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNNLFES 399 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 + I+ N F+ +LK IP + T++ A S + A K K Sbjct: 400 NPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKYLMHKNI 457 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--------- 175 + +++I +N + + Y D +T +F Sbjct: 458 KYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKKLKEDKL 504 Query: 176 -EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + + E + + + G +D + + E ++ E+ + G+ + Sbjct: 505 DKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK-SIGIDFNLN 563 Query: 235 CLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +++ LF + L L + + T +VL S ++ + R A + + Sbjct: 564 SPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLKSTYT-D 622 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L+E +N + +R H Q T + Sbjct: 623 NLIELINY------------------------------KTNRLHTSFIQTKTATGRITSI 652 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I +R G + AD + IE +LA ++ ++ +KAFE +D Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKD 712 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 713 IHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--------- 760 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 E+A+ F +++ ++ E Sbjct: 761 -------KEEAKGFINSYFDSY-------------------------PKIKEF------- 781 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + ++ S L R + N R Sbjct: 782 -----------------IINQINFVRNAGY------SETILKRRRYIKEINSNNYLERSA 818 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDE 641 +I+Q + DI+ M+ K I+L VHDE++ E+P +E Sbjct: 819 AERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEE 873 Query: 642 FNASMLYHLMTSNPSWAKGLPLKA 665 + +M ++ LPL+A Sbjct: 874 NEVKKILKIMMET-AYTLNLPLRA 896 >gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 972 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 100/560 (17%), Positives = 176/560 (31%), Gaps = 83/560 (14%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSNGL 105 P K +L V HN+ F+ VL F L I I TL+ A Sbjct: 446 SGSKQPDSAKRSL-------VFHNAKFDLHVLARTFGLTQKQIDSANIIDTLIAAWMLSP 498 Query: 106 PS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 L + ++L +M + LI R K T ++ EY D Sbjct: 499 GQTGLGLDNQVMQLLQHEMIPIENLIGRGKKQITFNRTPIKD----------ATEYGAED 548 Query: 165 VTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 T ++ L K E L + + G VD + L ++ Sbjct: 549 AVYTLRLWAPLRAKLQKYDYEKYFFSQEMPLLKVLYQMEGVGAFVDTKILKKLQTDLEHR 608 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN--KKLTPQ 272 KL++E+ + G + ++L LF GL E +T VL + P Sbjct: 609 IEKLEKEICDMA-GCEFNIGSPKQLGEVLFDTLGLP-EIKKRSTDAAVLEELSFRSAHPI 666 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + V P P Sbjct: 667 VFAVIEYREL-------------------------------KKMQSTYVSVLPTLVNPDT 695 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEA 386 R H Q T + DP+ I + +R+ + ++ D + IE Sbjct: 696 KRIHTSFIQWGTATGRLSSRDPNLQNIPVRSDLGKQIRAAFVPQNPNNVILAVDYSQIEL 755 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA ++G++ +++++ G D++ T A V+ VT D R KV+ + Y A Sbjct: 756 RMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTADMRRDAKVVNFGVLYGMTAF 815 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +++ + + + + + + ++ A D ++ T R Sbjct: 816 ---RLSRDLKIPMAQAKSFIDG------YFEMYQGVQKFIDDTKAAAHRDGYVETLSGR- 865 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSG 565 ++ S + T G A K + + D+N L +ML Sbjct: 866 RRYIAGIDSSDRMESQMAERMAVNTPVQGSAADLIKIAMIRIQKRINDENLPLRMMLQVH 925 Query: 566 RSLVYRDVGNNRSYLNTTTR 585 LV+ + L+ + Sbjct: 926 DELVFECPKDQVEALSAMVK 945 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 9/76 (11%) Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649 VQ + D++ M+ ++L VHDE+V E P E ++M+ Sbjct: 887 AVNTPVQGSAADLIKIAMIRIQKRINDENLPLRMMLQVHDELVFECPKDQVEALSAMVKS 946 Query: 650 LMTSNPSWAKGLPLKA 665 M +PL A Sbjct: 947 EMEGAME--LKVPLVA 960 >gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] Length = 880 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 98/505 (19%), Positives = 163/505 (32%), Gaps = 131/505 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + RG VDVA +N ++ +L+ E+++L G + ++L Sbjct: 480 DMEFPLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLA-GQAFNPNSPKQL 538 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF GL + T+T T VL K P + R A L L + Sbjct: 539 GEILFERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQLAKLQGTY-LAGLPK 597 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + +DG++ H Q +T ++DP+ Sbjct: 598 FIQADGKI-------------------------------HTRFVQTLTQTGRLSSADPNL 626 Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + SE G +L AD + IE RVLA ++G+ +AF G+D++ Sbjct: 627 QNIPIRMEEGRKIRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHA 686 Query: 411 TTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T R F +A + V D R K + + Y + + + Sbjct: 687 ATARRVFGLAEDEAVNSDMRRQAKAVNFGIVYGISDYGLSQ---NLDMPRKEAKAFID-- 741 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 E+ F + + + VS LW Sbjct: 742 RYLAEYPGISTFMQEIVAQAKKDG----------------------YVSTLW-------- 771 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +RR +P +Y + RS R+ +NT Sbjct: 772 -----------GRRRALPDIYSSNF---------NLRSFA------ERTAMNTP------ 799 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+ +A ++L VHDE++ E P + Sbjct: 800 ------------IQGTAADIIKVAMVALDQAIRQRDLQARLLLQVHDELILEAPQEEIAI 847 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEG 667 L +M S +PLK E Sbjct: 848 LEELVPEVMEGAVS--LSVPLKVEA 870 >gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 876 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 111/662 (16%), Positives = 206/662 (31%), Gaps = 143/662 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ FA +D + D P+ L LEN + +++ V Sbjct: 328 YLKD-DILKFAL-YDGSNHVVIDADKVHDYPE-LIAWLENDKTEKIVYDAKKSYIVAHR- 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 LDI I + ++LA P + V + Q KE I F KG+ Sbjct: 384 --LDIAIKHIVFDVMLASYIIDPSRTIDDVNSVVSYFDQH--YVKESIEVFGKGKKRHVP 439 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 D +H K + E + + L E L + + + G Sbjct: 440 EDEILDHHVGTIIEAINKTKPKMEAQLEEYNQTNLLDDLELPLARILSEMEETGIY---T 496 Query: 203 LAHTLNQIVDVERTKLDQELESL--TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 +A L ++ + KLD + ++ G + ++L LF L + T+T Sbjct: 497 VATDLQEMEKEIQAKLDVLINNIYNAAGESFNINSPKQLGVVLFETLELPVIKKTKTGYS 556 Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 VL + P + L++ S+ Sbjct: 557 TAVDVLEQLQGQHPI-------------------------------IDYILEYRTLSKLQ 585 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV-IAS 371 + +R H +Q + + DP+ I +R + Sbjct: 586 STYVEGLQK-VISEDNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRRIRKAFKSSD 644 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 + + AD + IE RVLA + ++ +AF ED++ T + FNV P +V R Sbjct: 645 DNNVIFSADYSQIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQ 704 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + + G+ + ++ D+ + E+ + Sbjct: 705 AKAVNFGIVYGISDYGLSQ---SLGITRKQAKQFID------DYLDSFPGVKQYMEDIVK 755 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 ++ T +RR +P + Sbjct: 756 DCKAQGYVETLL-------------------------------------HRRRYIPDITS 778 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + + R R+ +NT +Q + DI+ Sbjct: 779 RNF---------NLRGFA------ERTAMNTP------------------IQGSAADIIK 805 Query: 612 EGMMN------ATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLK 664 M+N T ++L VHDE++ E P + E + + +M + + A +PLK Sbjct: 806 LAMVNFVNEVKHTDFHAQLLLQVHDELIFELPKDEVEAFSEFIEEIMDN--ALALDVPLK 863 Query: 665 AE 666 E Sbjct: 864 VE 865 >gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8] gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8] Length = 857 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 85/498 (17%), Positives = 160/498 (32%), Gaps = 129/498 (25%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + L+ + E L + ++ G D + + + L ++ L G + Sbjct: 451 EMLKLFNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEALTSQIYDLAGG-EFN 509 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + GL + T++ VL P V R ++ Sbjct: 510 IASPKQLGEVLFEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVGLVLEYRTLTKLNSTY 569 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 +++L++ + +DGR+R + Q T Sbjct: 570 -VDSLLKEVEADGRVRSVFK-------------------------------QTETRTGRI 597 Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +++P+ I I +R +A +G + AD + IE RVLA + G++ K F Sbjct: 598 SSTEPNMQNIPVRKEIGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFAD 657 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T ++ F + V + R+ K + + Y GA + G+++ Sbjct: 658 GTDIHTMTASQVFGIPADAVLPEMRSAAKAVNFGIIYGIGAFSLS---KDIGVSVKEAKQ 714 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + K + +VSE + Sbjct: 715 YI-----------------------------------------KNYLDNFPKVSEF---M 730 Query: 525 HQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + E I+NG I +RR +P + R+ +N Sbjct: 731 DKTVEDGIKNGYVTTIFGRRRYIPELAATNK---------------VMQAFGKRAAMNAP 775 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET- 636 +Q + DI+ M + A K ++L VHDE++ E Sbjct: 776 ------------------IQGAAADIIKMAMVKVYKRLKAEKLDARLILQVHDELIIEVT 817 Query: 637 PDTDEFNASMLYHLMTSN 654 PD E ++L M Sbjct: 818 PDDKEKAKAILKEEMEKA 835 >gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1] Length = 908 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + K+ S L R + N Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896 >gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208] Length = 531 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 ++ T V +++ + + + I ++LA PS A++ Sbjct: 19 SEQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYT 75 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 76 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVAD----LEENEQLALMED 131 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 132 LELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 190 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 191 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 235 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 236 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 279 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 280 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 339 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 340 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 396 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 397 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 433 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 434 ----------------------------------RNFNVRGF-AERTAMNTP-------- 450 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M+ K ++L VHDE++ E P+ + Sbjct: 451 ----------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLE 500 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 501 EIVPDVMENAVE--LSVPLKVD 520 >gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144] Length = 876 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 104/664 (15%), Positives = 201/664 (30%), Gaps = 147/664 (22%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F + + D + L + LE+ + T + +++ + V Sbjct: 328 YLKD-TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAK-KTYVSAHR 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 ++I ++LA P ++ V + L Q K+ I F KG+ H Sbjct: 384 LGINI--ENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQ--NYVKDNITIFGKGKKHHIP 439 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYC 198 + H VT T E + ++E L E L + + + G Sbjct: 440 EEPILNEH----IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIY 495 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 D+ + + + L + + G + ++L LF L + T+T Sbjct: 496 TDINDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTG 554 Query: 259 CQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 VL + P + R A + Sbjct: 555 YSTAVDVLEKLQGEHPIIDDILEYRQLA-------------------------------K 583 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 + + R H +Q + + DP+ I +R Sbjct: 584 LQSTYVEGLQK-VISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKP 642 Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 S+ ++ AD + IE RVLA + ++ AF D++ T + FNV QV R Sbjct: 643 TSKDSVILSADYSQIELRVLAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMR 702 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y + + G+ + ++ + + + Sbjct: 703 RQAKAVNFGIVYGISDYGLSQ---SLGITRKQAKAFID------DYLASFPGVKQYMSDI 753 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A ++ T +RR +P + Sbjct: 754 VKDAKAQGYVETLL-------------------------------------HRRRYIPDI 776 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + + RS R+ +NT +Q + DI Sbjct: 777 TSRNF---------NLRSFA------ERTAMNTP------------------IQGSAADI 803 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP 662 + M+ TK ++L VHDE++ E P ++ E + + +M +P Sbjct: 804 IKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV--LDVP 861 Query: 663 LKAE 666 LK + Sbjct: 862 LKVD 865 >gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196] gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196] Length = 891 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 102/638 (15%), Positives = 203/638 (31%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 KE L N ++ ++ R ++ + + I L++A P+ Sbjct: 370 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 426 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 427 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPGLEVVAEHVARKVHVLYDVKQT 475 Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE L EQ L + + +G VD + + + +++QE+ Sbjct: 476 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYK 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 536 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHYRQ 594 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 595 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 623 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 624 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAKD 683 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 684 PGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 740 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + + + A + ++ T R R+ Sbjct: 741 GITRKAAAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIP 789 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 790 EITS----------------------------------------------RNFNLRSF-A 802 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 803 ERTAMNTP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVH 844 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P + L +M A +PLK + Sbjct: 845 DELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum] gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] Length = 856 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 86/500 (17%), Positives = 151/500 (30%), Gaps = 128/500 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + ++ G VD L+ KL++E+ L G + ++L Sbjct: 459 EIPLIPVLYSMEKWGIKVDKEYLKQLSDEFCERIKKLEEEIYELA-GTRFNLNSPKQLSE 517 Query: 242 WLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF L +T VL + P ++ Sbjct: 518 VLFERLKLPSGKKGKTGYSTSSSVLQNLINAHPIVRKIL--------------------- 556 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 Q+ + P P+ R H + + T +S+P+ Sbjct: 557 ----------QYRELYKLKSTYVDAIPNLVNPQTGRVHTKFNPTGTATGRISSSEPNLQN 606 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R ++ +G LV D + IE R++A ++ E + AF+ GED++ T Sbjct: 607 IPIKSEEGRKIRRAFVSEDGYFLVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTA 666 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V +V R+ K + + Y + + S T Sbjct: 667 SEIFGVPEEEVDDLLRSRAKAVNFGIIYGISSFGLSETVSITP----------------- 709 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 E+AE F +++P + ++ R+K Sbjct: 710 --EEAEKFIDSYFKHYPR-------VKLFIDKTIHEAREKL------------------- 741 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K + RKR + + K N R +N Sbjct: 742 YVKTLFGRKRYIPEIKSINKQVRNAY----------------ERIAINAP---------- 775 Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646 +Q + DI+ M+ K I+L +HDE++ E P+ + EF M Sbjct: 776 --------IQGTAADIIKLAMIEIYKEIENKNLKSRILLQIHDELILEVPEEEMEFTPLM 827 Query: 647 LYHLMTSNPSWAKGLPLKAE 666 M +PL E Sbjct: 828 AKEKMEKVVE--LSVPLVVE 845 >gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.] Length = 912 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 107/597 (17%), Positives = 194/597 (32%), Gaps = 88/597 (14%) Query: 2 ATLFIDFETRSPIDLTK--CGIC---KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56 +D ET S L GI K E + L A ++ P +L D M Sbjct: 334 NHFALDTETTSENPLKAKLVGISVSLKANEAFYIPL-AHKYEGVPKQL-DMNETLNM--- 388 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114 LK EN D+ + N ++ VLK I I ++A P A Sbjct: 389 LKGVFENPDIKKIGQNIKYDWIVLKRH---GIDIAGVYSDTMIASYLINPSKRAHNLDQI 445 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL K +E + + + Y D +T Sbjct: 446 ALDFLGHKKITFEETVGKKKPESGFSNV----------PLEKAVSYACEDADITLMAHDV 495 Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L P + E L + + +G CVD L++ + + L++ + S Sbjct: 496 LFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSELSKHFEQQIEDLEENIYS 555 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNN 279 + G+ + + ++L LF + L ++ +T VL+ + V + Sbjct: 556 VA-GMTFNIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVLTELAQNHELPALVLRH 614 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + + + L+E + P R H Sbjct: 615 RTLSKLKSTYT-DALLEIAD------------------------------PETERIHTSF 643 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q +T +S+P+ I +RS + +G KL+ AD + IE R+LA A Sbjct: 644 NQTVTATGRLSSSNPNLQNIPVKTDEGREIRSAFVPKKGWKLLSADYSQIELRLLAHCAE 703 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + AF ED++ T F + P +T + R K + ++ Y A + Sbjct: 704 DEILINAFLEDEDIHTRTAIEIFQIFPEFITPELRYQAKTINFSIMYGISAFSLS---KD 760 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + N+ +++ + F A + T R+ + Sbjct: 761 LGISQKMAQTYI--NNYFARYKEVKRFIDKTIS----DAHVNKKTSTLLGRI-RLLPDID 813 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVY 570 S + + T G A K + + + K ++L LV+ Sbjct: 814 SSNKIVIAAAERIAVNTPIQGTAADLIKIAMINIDKAFTEKKLKAAMLLSVHDELVF 870 >gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] Length = 873 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 97/612 (15%), Positives = 178/612 (29%), Gaps = 146/612 (23%) Query: 77 RTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKLSSQKMEEGK------EL 129 R + + VL + L+ V + L++ + + EL Sbjct: 370 RLAFSQLLEDSEVPKQVADSKVLYSLLLNEEIILRGVSLDIGLAAYLINPTRNKFEPLEL 429 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + + G + + E + L + E+ L + Sbjct: 430 VKEYIPGAGEFANLAEEASALAQVADSYKE-----TLEELGLSALLHEM---EEPLSPIL 481 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + +G VDV + + VE +L+QE+ + G + ++L LF + GL Sbjct: 482 AEMEKQGIAVDVQRLQEFGRELTVELQRLEQEIYADA-GETFNINSPQQLGHILFEKLGL 540 Query: 250 HLEDLTETTCQRV---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+T L + +V + R Sbjct: 541 PPMKKTKTGYSTDADTLEELRDQHSIVERVLDYRQL------------------------ 576 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361 S+ Q R H Q +T +++P+ I + Sbjct: 577 -------SKLMSTYVNGLLAQIH--EGRVHTTFQQTVTATGRLSSTEPNLQNIPIRLELG 627 Query: 362 DCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R EG L+ AD + IE R+LA + ++ ++F +D++ T + F + Sbjct: 628 RLLRKVFTPTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIP 687 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 A+VTKD R K + L Y + G+ ++T Sbjct: 688 MAEVTKDMRRKAKAVNFGLIYGLTDF---GLGRDLGVPRKEAKTYIETYFH--------- 735 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 R + L + + E G+ Sbjct: 736 -----------------------------------RYEGVKRYLEEIVVKAKEEGQVRTL 760 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTE 599 R + +P R R +NT Sbjct: 761 LNR---------------LRRIPELRHPNRVQRQFGERIAMNTP---------------- 789 Query: 600 NIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN 654 +Q + DI+ M+ +A +++L VHDE+V E P+ E A ++ M S Sbjct: 790 --IQGTAADIMKLAMLGVAEALKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA 847 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 848 FP--LSVPLIAD 857 >gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] Length = 908 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 209/701 (29%), Gaps = 182/701 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58 + ID ET S + Y L +P K Sbjct: 341 KYISIDTETSS--------LDTYTA----KLIGISISFKE------FEGCYIPIEAKGKI 382 Query: 59 -----------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 L ++ I+ N F+ +LK IP + T++ A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + A K K + +++I +N + + Y D + Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADI 487 Query: 168 TREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 T +F + E + + + G +D + + E Sbjct: 488 TFRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEL 547 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQ 275 ++ E+ + G+ + +++ LF + L L + + T +VL S ++ Sbjct: 548 IENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIEN 606 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + R A + + L+E +N + +R Sbjct: 607 LIKYRQIAKLKSTYT-DNLIELINY------------------------------KTNRL 635 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H Q T + +P+ I +R G + AD + IE +LA Sbjct: 636 HTSFIQTKTATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILA 695 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ ++ +KAFE +D++ T ++ F + ++T + R I K + + Y+ + Sbjct: 696 HLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---R 752 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A G+ E+A+ F +++ Sbjct: 753 LAKELGIT----------------KEEAKGFINSYFDSY--------------------- 775 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ E + + K+ S L Sbjct: 776 ----PKIKEF------------------------IINQINFVKNAGY------SETILKR 801 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624 R + N R +I+Q + DI+ M+ K I Sbjct: 802 RRYIKEINSNNYLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKI 856 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +L VHDE++ E+P +E + +M ++ LPL+A Sbjct: 857 LLQVHDEMLIESPIEEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 880 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 101/616 (16%), Positives = 173/616 (28%), Gaps = 140/616 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +D H + I + LA P + + Sbjct: 378 SDAPKYLHEAK---AAWHMLAGRGIELRGIAHDTALAAYLLRPG--------QRTYALTD 426 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L + D N + E +EI E + E Sbjct: 427 VSQRHLQKSLGAATEQLSILDENP--LVDQAGAIMELAAELTAQLQEI-DSFELYTDLEL 483 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G VD + T + + ++ L + ++L+ L Sbjct: 484 PLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVL 543 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNS 300 F + T+T ++L F + + A R L L++ + Sbjct: 544 FDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTLEGLIKTIQP 603 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DGR+ H +Q +T +++P+ I Sbjct: 604 DGRI-------------------------------HTTFNQTVTSTGRLSSTEPNLQNIP 632 Query: 361 -----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +RS + EG L+ AD + IE RV+A ++ + ++A+ GEDL+ + Sbjct: 633 VRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNYVGS 692 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F+V +VT + R K M L Y A + G+ + Sbjct: 693 KVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQ---QLGIPAREAKEI--------- 740 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 R + L + Q ++ Sbjct: 741 -----------------------------------MESYFERFGGVKRYLDEVVVQARKD 765 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G RR LP LN+ R + RE Sbjct: 766 GYTSTVFGRRRY---------------LPE---------------LNSDNR-VARENAER 794 Query: 595 GKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCET-PDTDEFNASMLYH 649 L I Q + DI+ M+ KA ++L VHDE+V E P E +L Sbjct: 795 AALNAPI-QGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILER 853 Query: 650 LMTSNPSWAKGLPLKA 665 M +PL+ Sbjct: 854 EMDKAIE--LTVPLEV 867 >gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1] Length = 845 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 93/495 (18%), Positives = 172/495 (34%), Gaps = 133/495 (26%) Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY---GLVS 231 E L E L + ++ D G C+D T++ +E + + Y G Sbjct: 441 TELLEKIELPLTEVLASMEDIGICIDKQGVEDFGT----YLTEMIEETQQMVYDDAGHSF 496 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L T LF E GL + T++ VL + P V R ++ Sbjct: 497 NIASPKQLGTVLFEEMGLPAKKKTKSGYSTNAEVLEELRNDAPIVDNVLKFRQYTKLNST 556 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L++ + DGR+ H Q T Sbjct: 557 Y-VVGLLDKIADDGRI-------------------------------HTWFRQTETRTGR 584 Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I + +R +A +G+KLV AD + IE RV+A + G++ ++AF Sbjct: 585 ISSTEPNMQNIPVRTELGAQMRKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAFN 644 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +GED++ +T A+ F++ VT + R+ K + + Y GA + A G ++ Sbjct: 645 SGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIGAFSL---AKDIGTSVAKAK 701 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + E +M E ++A +D ++ Sbjct: 702 KYIN-----DYLAKYEKVNEFM-ETTVDNAFKDGYV------------------------ 731 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + ++R +P L S ++ R +NT Sbjct: 732 -------------TTMFGRKRRIP-------------ELSSSNKMM--QAAGKRIAMNTP 763 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637 VQ + D++ M+N ++L VHDE++ E Sbjct: 764 ------------------VQGTAADLIKIAMINVYNRLKAEDIDAKLILQVHDELILEAS 805 Query: 638 DTD-EFNASMLYHLM 651 ++D E A +L M Sbjct: 806 ESDAEHAAQLLKEEM 820 >gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51] gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 873 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 97/612 (15%), Positives = 178/612 (29%), Gaps = 146/612 (23%) Query: 77 RTVLKACFNLDIPIHRWICTLVL-ARSNGLPSALKAVGEALKLSSQKMEEGK------EL 129 R + + VL + L+ V + L++ + + EL Sbjct: 370 RLAFSQLLEDSEVPKQVADSKVLYSLLLNEEIILRGVSLDIGLAAYLINPTRNKFEPLEL 429 Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189 + + G + + E + L + E+ L + Sbjct: 430 VKEYIPGAGEFANLAEEASALAQVADSYKE-----TLEELGLSALLHEM---EEPLSPIL 481 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + +G VDV + + VE +L+QE+ + G + ++L LF + GL Sbjct: 482 AEMEKQGIAVDVQRLQEFGRELTVELQRLEQEIYADA-GETFNINSPQQLGHILFEKLGL 540 Query: 250 HLEDLTETTCQRV---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+T L + +V + R Sbjct: 541 PPMKKTKTGYSTDADTLEELRDQHSIVERVLDYRQL------------------------ 576 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361 S+ Q R H Q +T +++P+ I + Sbjct: 577 -------SKLMSTYVNGLLAQIH--EGRVHTTFQQTVTATGRLSSTEPNLQNIPIRLELG 627 Query: 362 DCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R EG L+ AD + IE R+LA + ++ ++F +D++ T + F + Sbjct: 628 RLLRKVFTPTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIP 687 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 A+VTKD R K + L Y + G+ ++T Sbjct: 688 MAEVTKDMRRKAKAVNFGLIYGLTDF---GLGRDLGVPRKEAKTYIETYFH--------- 735 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 R + L + + E G+ Sbjct: 736 -----------------------------------RYEGVKRYLEEIVVKAKEEGQVRTL 760 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTE 599 R + +P R R +NT Sbjct: 761 LNR---------------LRRIPELRHPNRVQRQFGERIAMNTP---------------- 789 Query: 600 NIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN 654 +Q + DI+ M+ +A +++L VHDE+V E P+ E A ++ M S Sbjct: 790 --IQGTAADIMKLAMLGVAEALKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA 847 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 848 FP--LSVPLIAD 857 >gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] Length = 877 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 107/656 (16%), Positives = 204/656 (31%), Gaps = 154/656 (23%) Query: 32 LFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + AF + + D + + P+ + +N R +L N++ Sbjct: 344 IVAFAWGNAEKIYVSKNLDLLTEMKFPENTYDFKKN-------------RVLLSH-LNIE 389 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 +P+ +LA+ + + +L E I F KG D Sbjct: 390 LPL--VKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI--FGKGTKLALPDDEIL 445 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 +H K + ++ LS E L + + G V + Sbjct: 446 FDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEI 505 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLS 264 + + L +E+ L G + ++L LF + L + T+T VL Sbjct: 506 GAENEEKLALLTREIYELA-GEEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLE 564 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 L+P ++ R ++ Sbjct: 565 DLAALSPVVAKILEYRQ-------------------------------INKVQSTYVKGL 593 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVA 379 PQ + + H Q +T + DP+ I +R + S+ L+ + Sbjct: 594 IPQ-IADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSQDSLLLSS 652 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438 D + IE RVLA ++ ++ + AF+ G D++ +T R F + VT + R K + Sbjct: 653 DYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGIEKAEDVTANDRRNAKAVNFG 712 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y +A G+ + ++T + + + EN A + F Sbjct: 713 VVYGISDF---GLARNLGITRKDAKNYIET------YFERYPGIKTYMENIVREARDKGF 763 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + T ++ +RR +P + Sbjct: 764 VET-------------------------------------MSHRRRKIPDI--------- 777 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 + R+ R R+ +N+ +Q + DIL M+N Sbjct: 778 -----NARNFNVRGF-AERTAINSP------------------IQGSAADILKIAMINLD 813 Query: 619 KAG------YDIVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 KA ++L VHDEI+ + P + +E ++ M A +PLK + Sbjct: 814 KALTERQSKSKLLLQVHDEIILDVPLEELEEIQV-LVKETMEEAIELA--VPLKVD 866 >gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans] Length = 903 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 109/678 (16%), Positives = 196/678 (28%), Gaps = 169/678 (24%) Query: 44 LWDCVHDPVMPQVLKEALENTDVTIV----AHNSYFERTVLKACFNLDIPIHRWICTLVL 99 + + D ++ V A+ FER V P+ W+ Sbjct: 344 VVEVTGDNPHDGEVR------GVAWWDGHTAYFIPFERLVQSDMR----PLADWLADARR 393 Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-----HECLYDRNKPNHREAW 154 + + L+ + + A + P EA Sbjct: 394 PKRTHDSHRAEVALFWHGLAFRGTSFCTHIAAYLLDPTESRHTLADLSRRYGLPPVPEAE 453 Query: 155 RLFGEYCK-----GDVTV-----TREIFKRLEPLSSK--------------EQELWYLDQ 190 ++G+ K D + RL PL E L Sbjct: 454 DVYGKGAKFKVPDRDTLARYVGRKAALVARLVPLLEADLAACGMRSLFYDLELPLSSELA 513 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G VD A + + K+++E+ L G + ++L LF + GL Sbjct: 514 VMETVGVRVDAAALAAYGEELREAAAKVEREIYELA-GTTFNIGSTKQLGEILFDKLGLP 572 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 + T+T ++L P + +VE + L + Sbjct: 573 VVKKTKTGYSTDADVLEELAP-------------------YHPIVEKI---------LHY 604 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 ++ + P+ + H Q I + P+ I +R Sbjct: 605 RQLTKLQSTYIEGLLKEIRPQTGKIHTYYQQTIAATGRLSSQFPNLQNIPIRLEEGRKIR 664 Query: 366 SCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 + SE G ++ AD + IE RVLA ++G++ +AF TG D++ T F V+ +V Sbjct: 665 KAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSEDRV 724 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 R K + + Y +A ++ A + Sbjct: 725 DARMRRQAKAVNFGIIYGISDF---GLAQNLNISRKEAAEFI------------------ 763 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 RQ + S + + EQ +G RR Sbjct: 764 --------------------------RQYFAVFSGVKAYRERIVEQARRDGYVTTLLGRR 797 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYR-DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 LP + Y R+ +NT +Q Sbjct: 798 RY---------------LPDINASNYNLRSFAERTAMNTP------------------IQ 824 Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656 + DI+ M+ T+ ++L VHDE+V E P + + ++ +M S Sbjct: 825 GTAADIIKTAMVRLTRRMRDVGLKSRMLLQVHDELVFEVPPDELDAMRELVTDVMESAVP 884 Query: 657 WAKGLPLKAE-GYESKRY 673 +PLK + + + Y Sbjct: 885 --LDVPLKVDVSWGADWY 900 >gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1] gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1] Length = 908 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 110/650 (16%), Positives = 198/650 (30%), Gaps = 144/650 (22%) Query: 39 DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D DP + L L + V H + + + Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAKL---AIHDLQGRGWTLAGVTSDT 423 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 LA P + L + K + + L D + +A + Sbjct: 424 ALAAYLVRPGQ-----RSFALDDLSLRYLKRELRADNPEQQQLSLLDDSDGVDDQAVQTL 478 Query: 158 GEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 V + + + L L + E + + + G VD+ + L Q Sbjct: 479 LLRASAVVDLADALDEELSRIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGL-QSE 537 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 ++ + E G + ++L+ LF E + T+T + + L Sbjct: 538 FADQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLFD 597 Query: 272 QAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + F + A R A + ++ L+ A+ SDGR+ T Sbjct: 598 KTGHPFLQHLLAHRDATRLKVTVDGLLNAVASDGRIHTT--------------------- 636 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLA 382 +Q I +++P+ I +R + +G +L+ AD + Sbjct: 637 ----------FNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYGELMTADYS 686 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ ++ ++AF TGEDL+ +R+F+V +VT + R K M L Y Sbjct: 687 QIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAYG 746 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A + + Sbjct: 747 LSAYGLSQQLKIS----------------------------------------------- 759 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 E K+ Q +R + + L +Q ++G RR L Sbjct: 760 TEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRY---------------L 804 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 P S + + RE L I Q + DI+ M+N +A Sbjct: 805 PELDS----------------SNRQVREAAERAALNAPI-QGSAADIIKVAMINVDQAIK 847 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 +L VHDE++ E D + L M S ++A +PL+ Sbjct: 848 DAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGS--AYALDVPLEV 895 >gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] Length = 908 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFKSNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + K+ S L R + N Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896 >gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 894 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 102/626 (16%), Positives = 183/626 (29%), Gaps = 149/626 (23%) Query: 76 ERTVLKACFNLDIPIHRWICTL-VLARSNGLPSALKAVGEALKLSSQKMEEGKE------ 128 + L A L L + L++ + G+ Sbjct: 369 DERALSAWLADPAFPKAAHDVKGPLHAVRDRGWKLAGLSSDTALAAYLVRPGQRSFDLPD 428 Query: 129 -LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL-- 185 ++ + E D + + E V L E Sbjct: 429 LVVRYLQRELRAEQGEDDGQLSLLEDEEQTKAGAAASELVRARAVAELADTLDDELARID 488 Query: 186 ------------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + + G VD L + Q+ + G + Sbjct: 489 STRLLTELELPLLQVLSELEAAGIAVDADQLAGLGAHFAARVKQAAQDAYGVI-GKEINL 547 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LK 290 ++L+ LF E G+ T+T + + L + F M R A Sbjct: 548 GSPKQLQVVLFDELGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT 607 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ LV+++ DGR+ H L+Q I Sbjct: 608 VDGLVKSIADDGRI-------------------------------HTTLNQTIAATGRLS 636 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +++P+ I +R + EG +L+ AD + IE R++A ++G++ ++AF T Sbjct: 637 STEPNLQNIPIRTEEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRT 696 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ +R+F V +V + R K M L Y A + + Sbjct: 697 GEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRIS--------- 747 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 E ++ +R + + L Sbjct: 748 --------------------------------------TEDAREQMEAYFARFGSVRDYL 769 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +Q ++G RR LP LN+ Sbjct: 770 RDVVDQARKDGYTSTILGRRRY---------------LP---------------DLNSDN 799 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD 640 RQ R+ L I Q + DI+ M++ +A ++L VHDE++ E D + Sbjct: 800 RQ-RRDMAERMALNAPI-QGSAADIIKVAMLDVHEALRPLRSRMLLQVHDELIIEVADGE 857 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKA 665 L M + ++A +PL+ Sbjct: 858 REEVERLVRERMGA--AYALDVPLEV 881 >gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 895 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 102/626 (16%), Positives = 183/626 (29%), Gaps = 149/626 (23%) Query: 76 ERTVLKACFNLDIPIHRWICTL-VLARSNGLPSALKAVGEALKLSSQKMEEGKE------ 128 + L A L L + L++ + G+ Sbjct: 370 DERALSAWLADPAFPKAAHDVKGPLHAVRDRGWKLAGLSSDTALAAYLVRPGQRSFDLPD 429 Query: 129 -LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL-- 185 ++ + E D + + E V L E Sbjct: 430 LVVRYLQRELRAEQGEDDGQLSLLEDEEQTKAGAAASELVRARAVAELADTLDDELARID 489 Query: 186 ------------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + + G VD L + Q+ + G + Sbjct: 490 STRLLTELELPLLQVLSELEAAGIAVDADQLAGLGAHFAARVKQAAQDAYGVI-GKEINL 548 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LK 290 ++L+ LF E G+ T+T + + L + F M R A Sbjct: 549 GSPKQLQVVLFDELGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT 608 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ LV+++ DGR+ H L+Q I Sbjct: 609 VDGLVKSIADDGRI-------------------------------HTTLNQTIAATGRLS 637 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +++P+ I +R + EG +L+ AD + IE R++A ++G++ ++AF T Sbjct: 638 STEPNLQNIPIRTEEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRT 697 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ +R+F V +V + R K M L Y A + + Sbjct: 698 GEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRIS--------- 748 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 E ++ +R + + L Sbjct: 749 --------------------------------------TEDAREQMEAYFARFGSVRDYL 770 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +Q ++G RR LP LN+ Sbjct: 771 RDVVDQARKDGYTSTILGRRRY---------------LP---------------DLNSDN 800 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD 640 RQ R+ L I Q + DI+ M++ +A ++L VHDE++ E D + Sbjct: 801 RQ-RRDMAERMALNAPI-QGSAADIIKVAMLDVHEALRPLRSRMLLQVHDELIIEVADGE 858 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKA 665 L M + ++A +PL+ Sbjct: 859 REEVERLVRERMGA--AYALDVPLEV 882 >gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX] gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX] Length = 929 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 107/651 (16%), Positives = 184/651 (28%), Gaps = 141/651 (21%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFN 85 D +I A D + A L + V H L+A + Sbjct: 375 DGDIIRLALAVPSGRAVCLDPTQLDPADEAALTAWLADPAYPKVLHGVK---WALRALWA 431 Query: 86 LDIPIHRWICTLVLARSNGLPSA---------LKAVGEALKLSSQKMEEGKELIARFCKG 136 + +A P L+ +G L ++ EG +L Sbjct: 432 RGWTLDGVESDTAIAAYLLEPGRRNFELATLCLRYLGREL---TEHNAEGAQLTLDLEGT 488 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + R L + + L+ L + E L + + D G Sbjct: 489 GDDQDTARRELALRA----LATVELALALDAELTRREGLDLLHNLELPLAEVLARMEDAG 544 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 D+ L + E L G + ++L+ LF E GL + Sbjct: 545 IAADLTYLRDLEAEFAAAVRQAVDEAHRL-VGREFNLGSPKQLQQILFDELGLPKTKRIK 603 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 T + L Q + R +LR T++ G +T Sbjct: 604 TGYTTDADALAWLAAQTDNELPVILLRHRDQT--------------KLRTTVE--GLIKT 647 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 + R H Q +T +++P+ I +R + Sbjct: 648 ------------IAEDGRIHTTFHQTVTATGRLSSAEPNLQNIPVRTDAGRRIRRAFVVG 695 Query: 372 EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 EG + L+ AD + IE R++A ++ ++ ++AF +G D + +R F + QV + RA Sbjct: 696 EGYEQLLTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARA 755 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K M L Y +A G++ Sbjct: 756 RIKAMNYGLAYGLSDY---GLAQQLGISPKEA---------------------------- 784 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + + S ++ + L + G RR Sbjct: 785 ----------------RVLMEEYFSHFGKVRDYLEAVVVRARREGYTATILGRRRY---- 824 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 LP LN+ RQ RE L I Q + DI+ Sbjct: 825 -----------LP---------------DLNSDNRQ-RREMAERMALNAPI-QGSAADII 856 Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN 654 M+ +A ++L VHDE+V E P + ++ M+ Sbjct: 857 KLAMLRVDRALRENGLASRMLLQVHDELVLEVAPGELDTVRELVVEHMSQA 907 >gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS] gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS] Length = 920 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 110/675 (16%), Positives = 201/675 (29%), Gaps = 149/675 (22%) Query: 16 LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNS 73 L G Y D + D D DP L L + H + Sbjct: 357 LAVVGTHLAYDADATALAIVAADGDG--RYIDTTSLDPDDEAALASWLADPGPPKALHEA 414 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 + + LA P + L + + + Sbjct: 415 KL---AMHDLAGRGWKLAGVTSDTALAAYLVRPGQ-----RSFSLDDLSLRYLRRELRAD 466 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWY 187 + L D + +A + + + + + L + S E + Sbjct: 467 NPAQQQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQR 526 Query: 188 LDQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + G VD+ L ++ D+ R + + G + ++L+ LF E Sbjct: 527 VLAEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVI--GKQINLGSPKQLQAVLFDE 584 Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGR 303 + T+T + + L + F + A R A + ++ L+ ++ SDGR Sbjct: 585 LEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGR 644 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 + T +Q I +++P+ I Sbjct: 645 IHTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRT 673 Query: 361 --SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +R + +G ++ AD + IE R++A ++ + ++AF TGEDL+ +R+F Sbjct: 674 EAGRRIRDAFVVGDGYTEVMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAF 733 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 +V +VT D R K M L Y A +A+ ++ Sbjct: 734 DVPIDEVTPDLRRRVKAMSYGLAYGLSAY---GLAAQLKISTEEA--------------- 775 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 K Q +R + + L +Q ++G Sbjct: 776 -----------------------------KVQMDQYFARFGGIRDYLRDVVDQARKDGYT 806 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 RR LP S RE L Sbjct: 807 STVFGRRRY---------------LPELDSSNRN----------------VREAAERAAL 835 Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650 I Q + DI+ M++ +A ++L VHDE++ E D + L Sbjct: 836 NAPI-QGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDK 894 Query: 651 MTSNPSWAKGLPLKA 665 M S ++A +PL+ Sbjct: 895 MGS--AYALDVPLEV 907 >gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] Length = 908 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 104/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + ++ S L R + N Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516] gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516] Length = 933 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 99/637 (15%), Positives = 176/637 (27%), Gaps = 150/637 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L+ LE+ + VA ++ +L P+ S L + + Sbjct: 411 LRPMLEDDSIMKVAQDAKAAMKLLGRHGIALAPVDDTHLLSYALNSGLHGHTLDTLSD-- 468 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +L + E K ++ T R Y + + +++ L+ Sbjct: 469 RLLGHRPIELKSVVGTGKSART----------FDRVPVEAVTPYAAEEADIVLRLWQALK 518 Query: 177 PLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E+ L + + G VD ++ + L+ E+ L Sbjct: 519 QQLFRKQVTRVYETLERPLIPVLAGMERAGIRVDRDTLSRMSNAFSQKMAGLEAEVYELA 578 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF E GL +T T VL ++ + R Sbjct: 579 -GREFNLGSPKQLGEILFDELGLPGGKKGKTGAYGTGADVLEDLATEHDLPGRILDWRQ- 636 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 S+ P SR H Q Sbjct: 637 ------------------------------ISKLKSTYTDSLQGYIQPETSRVHTSYSQA 666 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +++P+ I +R +A GK LV D + IE R+LA +AG Sbjct: 667 GAATGRLASTEPNLQNIPVRTEEGRRIREAFVADLGKVLVSLDYSQIELRILAHVAGLDA 726 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF +G+D++ T + FNV ++T D R K + + Y + Sbjct: 727 LREAFRSGQDIHAATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLAR------- 779 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 S E+A+ F E P R Sbjct: 780 ------------SLRIPREEAQGFINRYFERFP------------------GIRDYMDET 809 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 F QT+ K P + R Sbjct: 810 VAF--AKEHGFVQTLFGRKIHTPEINAKGPGAGFAR-----------------------R 844 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIV 633 + +N +Q + D++ M+ ++L VHDE++ Sbjct: 845 AAINAP------------------IQGTAADVIRRAMVRMPAAIEGLPATMLLQVHDELL 886 Query: 634 CETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEG 667 E + E + +M + P +PL + Sbjct: 887 FEVEEGAVEALVAAAREVMEAAAMPVVQFTVPLVVDA 923 >gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 928 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 89/586 (15%), Positives = 201/586 (34%), Gaps = 84/586 (14%) Query: 27 DVCVILFAFGFDDHPVELWDCV--HDPVMP--QVLKEALENTDVTIVAHNSYFERTVLKA 82 ++ AF + ++P Q+ KE E+ + V N ++ VLK Sbjct: 371 SAELVGIAFTLQEGEAYFLPFFGRKRDIIPTVQLFKEIFESDTILKVGQNLKYDINVLKK 430 Query: 83 C-FNLDIPIHRWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHE 140 ++ PI +++A P L + A + ++ +ELI + Sbjct: 431 YGIRMNYPI----FDILIAHYLINPEYLHNLDFLAKTYLNYRIINTEELIG----SKKES 482 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQ 190 L R P L +Y + + ++ EP+ K E L ++ Sbjct: 483 QLSVRQVP-----LSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVFVLS 537 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL- 249 + + G +D++ + +++ +++ + ++ G + + + + LF + Sbjct: 538 DMEEFGVKLDISALKDYSVVLNRYLESIEKIIFQIS-GKIFNVNSPKMVGEILFDHLKII 596 Query: 250 ----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + T + +L + KK P ++ R ++ + ++TL ++ + Sbjct: 597 ENSKKTKSGQYATSEGILENLKKKHPIVGEILKYR-KSKKLLTTYIDTLPTLVSFIDK-- 653 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 + H +Q T ++ P+ I Sbjct: 654 ----------------------------KIHTTYNQATTATGRLSSNSPNLQNIPIRDKE 685 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I + + AD + IE R++A ++ ++ L+AF G+D++ + F V Sbjct: 686 GKEIRRVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVP 745 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 A++T D R K+ + Y +A ++ L+ N + D +N Sbjct: 746 LAEITCDMRRKAKITNFGIIYGISVF---GLAEQLQVSRFIAKELI--NKYFMIFPDIKN 800 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + A +D ++ T R K+ +SR S + + G A Sbjct: 801 YIDRSIAI----ARKDGYVETIFRR-KRFLPDINSRNSVVRKYAERNSINAPIQGSAADI 855 Query: 541 RKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYRDVGNNRSYLNTTT 584 K + ++ + N+L +++ L + + + Sbjct: 856 IK-VAMNRIHRRLIDNDLQSKMIIQVHDELNFNVFIDELDKVKQIV 900 >gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] Length = 972 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 90/497 (18%), Positives = 169/497 (34%), Gaps = 69/497 (13%) Query: 44 LWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 + + +P+ L+ + VAHN+ F+ VL+ +P+ + Sbjct: 421 VGHTTGEMQLPRDRVIAALRSFFADPARPKVAHNAKFDIEVLERA---GMPVAGLSFDTM 477 Query: 99 LAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 LA LK + ++ ++ +LI + T Sbjct: 478 LAAGLLDKRRNLKDLAFYELELAEPLDAIGDLIGKGKNQVT----------FAEVPIARA 527 Query: 158 GEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHT 206 Y D +T + LE E L + + G +DV Sbjct: 528 TRYAAADADMTLRLQPALEAKLRAAGSLADMFYRLEMPLVPVLVRMEQSGILLDVPYMRA 587 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L + + E +++Q++ ++ G + ++L LF +L T +R + Sbjct: 588 LGERMGRELAQIEQQIFAIA-GKPFNINSGDQLSEVLFG----PKINLPTTGLERTRTGR 642 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 LT QA++ +A ++ G + L+ S+ P Sbjct: 643 YSLTAQALEEL------------------QASDTTGIIELILRHRRLSKLKSTYVDELPA 684 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 P R H + +Q+ ++ P+ I VR IA+ G L+ AD Sbjct: 685 LVNPETGRVHTDYNQLGAATGRLSSNSPNLQNIPTRTEEGREVRRGFIAAPGHVLIAADY 744 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA + G+ ++ F G D++ T AR F V V K+QR I K + + Y Sbjct: 745 SQIELRVLAHITGDPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIY 804 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 +A G++ +L+ + + R + E + ++ + Sbjct: 805 GISPF---GLAQRLGISREQARNLIDS------LFNQFPRIRDYIDRTLETGRNEGYVQS 855 Query: 502 ACERVKKAW--RQKHSR 516 R + + R R Sbjct: 856 LFGRRRPMFDLRTSGPR 872 Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 17/141 (12%) Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTRQLTREYTYGGKL 597 AR D + ++ + L +GR+ Y G R + T R+ + Sbjct: 822 ARNLIDSLFNQFPRIRDYIDRTLETGRNEGYVQSLFGRRRPMFDLRTSGPRRQAAER-EA 880 Query: 598 TENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASMLYHL 650 + +Q+ + DI+ M+ ++L VHDE++ E P+ + + +++ Sbjct: 881 INHPIQSTAADIMKLAMIAVDAELRRRRLRTRMLLQVHDELIFEAPEAEVDEVVALVRER 940 Query: 651 MTSN-----PSWAKGLPLKAE 666 M P +A +PL+ E Sbjct: 941 MEGVLSDMHPPFA--VPLRVE 959 >gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] Length = 908 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 104/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + ++ S L R + N Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896 >gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273] gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272] gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272] gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273] Length = 891 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 98/632 (15%), Positives = 200/632 (31%), Gaps = 153/632 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L N ++ ++ R ++ + + I L++A P+ A+ Sbjct: 376 LANAEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFRAVA--- 429 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----- 175 KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 430 -KMKETHAV-------KSDEEVYGKGAKRAVPELDVVAEHVARKVHVLYDVKQTFIEELK 481 Query: 176 -----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E + E L + + +G VD + + + +++QE+ L G Sbjct: 482 KNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLA-GTE 540 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF L + T+T VL + + R + Sbjct: 541 FNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQL-GKLN 599 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ ++ D S+ H +Q++T Sbjct: 600 STYIEGLLKVVHED------------------------------SSKIHTRFNQVLTQTG 629 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++DP+ I +R + SE G + AD + IE RVLA +A + ++A Sbjct: 630 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEA 689 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ D++ T F V +VT + R K + + Y + G+ Sbjct: 690 FQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKA 746 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A + E++ ++ + + + A + ++ T R R+ ++ Sbjct: 747 AAEFI------EKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNR-----RRYIPEITS-- 793 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 R+ R R+ +N Sbjct: 794 --------------------------------------------RNFNLRSF-AERTAMN 808 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCE 635 T +Q + DI+ + M+ + G ++L VHDE++ E Sbjct: 809 TP------------------IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFE 850 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 P + L +M A +PLK + Sbjct: 851 APKEEIEKLEKLVPEVMEHAIELA--VPLKVD 880 >gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str. Chicago] Length = 1015 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 99/646 (15%), Positives = 189/646 (29%), Gaps = 155/646 (23%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D + + L+ + +T+V HN F+ V+ + T+V A Sbjct: 485 DPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDP 544 Query: 106 PSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 A + +E++A + + + Y D Sbjct: 545 DRGTYGMDVLAASFFQIRTITFEEVVA-------------KGQTFAHVPYECAVRYAAED 591 Query: 165 VTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 +T ++ L+ E L + + + G + + L + Sbjct: 592 ADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDL 651 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271 + + ++ SL G + ++L+T LF E L VL + P Sbjct: 652 IQQYEHDIFSLA-GHEFNIGSPKQLQTVLFQELHLPPGKKNTQGYSTDHSVLKKLARKHP 710 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A ++ R S+ +L + + GR+ Sbjct: 711 IAEKILLFR-DLSKLRSTYTESLAKLADQTGRV--------------------------- 742 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 H QI T + +P+ I +R A+ G +L+ AD IE Sbjct: 743 ----HTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIEL 798 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 VLA ++ ++ L AF D++ T A FNV+ V R I K + + Y A Sbjct: 799 VVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAF 858 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +++ ++ + Sbjct: 859 ---RLSDELKISQKEAQSFIY--------------------------------------- 876 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + + V ++ EQT + G +A +RR + + + Sbjct: 877 --RYFETYPGVYAFSTQV---AEQTRKTGYVTSLAGRRRYIRTIDSRNT----------- 920 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-- 623 R LNT +Q+ + DI+ M+ +A Sbjct: 921 ----LERARAERMALNTQ------------------IQSSAADIVKIAMIAIQRAFARRP 958 Query: 624 ----IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 ++L VHDE++ E P + + M +PL+ Sbjct: 959 LRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LSIPLR 1002 >gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251] gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251] Length = 902 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 111/686 (16%), Positives = 211/686 (30%), Gaps = 167/686 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV-LKEALENT-DVT 67 D G+ Y E+ ++ F+F F++ H + Q K A++ + Sbjct: 337 DTETTGLD-Y-ENDSLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQEDAKIAIKKIFNSR 394 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 +V HN F+ + + + +++LA SAL + KL KM K Sbjct: 395 VVGHNIKFDLHFVIRFLGEG-ELDIFADSMILAWLINPESALSLDKLSEKLLEHKMITFK 453 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179 E + + + A Y D +T ++ + Sbjct: 454 ESVK-------------KGETFASVALEEACNYAAEDAYITLRLYYLFLEMLKDQGAEHL 500 Query: 180 ---SKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 +KE E ++ + G ++ ++L +++ L L + Sbjct: 501 IEEAKEVEFPFIKTLLKMEMHGIELNSLFLEQFLAEAKDSLSELTKKIYELAS-LEFNIN 559 Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + GL T+T ++VL+S + R + + Sbjct: 560 STQQLGNVLFEQLGLPTSKKTKTGYSTDEKVLNSLLGEHEIIPYLLEYR-EVYKLYSTYI 618 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ D + SR H Q T + Sbjct: 619 EPLLKLSQQD-----------------------------KESRIHTSFVQTGTTTGRLSS 649 Query: 352 SDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +P+ I + +R +A EGKKL+ D + IE R+LA ++ ++AF + Sbjct: 650 KNPNLQNIPTRTALGTKIREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFMQDK 709 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D+++ T F + +R + K + L Y G+ + + Sbjct: 710 DIHMQTAIALFG---EEDAPLKRNVAKTVNFGLLY--------------GMGQKKLSETL 752 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 K +A +A+ + P VK +R Sbjct: 753 KITTA-----EAKEIIERYFSSFP--------------SVKSYFRSI------------- 780 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 V K+ + +L R Y + + Sbjct: 781 ----------------------VDFSKEAGYVETLL------------KRRRYFDYESAS 806 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640 Y + +I Q + DI+ M K ++L +HDE++ E ++ Sbjct: 807 PMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIEDEKLNAKMLLQIHDELIFEVDTSE 866 Query: 641 -EFNASMLYHLMTSNPSWAKGLPLKA 665 E ++M N +PLKA Sbjct: 867 AEILGEKFKNIM-QNIMP-LNIPLKA 890 >gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] Length = 997 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 99/646 (15%), Positives = 189/646 (29%), Gaps = 155/646 (23%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D + + L+ + +T+V HN F+ V+ + T+V A Sbjct: 467 DPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDP 526 Query: 106 PSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 A + +E++A + + + Y D Sbjct: 527 DRGTYGMDVLAASFFQIRTITFEEVVA-------------KGQTFAHVPYECAVRYAAED 573 Query: 165 VTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 +T ++ L+ E L + + + G + + L + Sbjct: 574 ADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDL 633 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271 + + ++ SL G + ++L+T LF E L VL + P Sbjct: 634 IQQYEHDIFSLA-GHEFNIGSPKQLQTVLFQELHLPPGKKNTQGYSTDHSVLKKLARKHP 692 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A ++ R S+ +L + + GR+ Sbjct: 693 IAEKILLFR-DLSKLRSTYTESLAKLADQTGRV--------------------------- 724 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 H QI T + +P+ I +R A+ G +L+ AD IE Sbjct: 725 ----HTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIEL 780 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 VLA ++ ++ L AF D++ T A FNV+ V R I K + + Y A Sbjct: 781 VVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAF 840 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +++ ++ + Sbjct: 841 ---RLSDELKISQKEAQSFIY--------------------------------------- 858 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + + V ++ EQT + G +A +RR + + + Sbjct: 859 --RYFETYPGVYAFSTQV---AEQTRKTGYVTSLAGRRRYIRTIDSRNT----------- 902 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-- 623 R LNT +Q+ + DI+ M+ +A Sbjct: 903 ----LERARAERMALNTQ------------------IQSSAADIVKIAMIAIQRAFARRP 940 Query: 624 ----IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 ++L VHDE++ E P + + M +PL+ Sbjct: 941 LRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LSIPLR 984 >gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 240 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 118/286 (41%), Gaps = 59/286 (20%) Query: 402 FETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLN 458 F+ GEDLY T + F V + V + R GK+ LA GY G A + M + GL+ Sbjct: 1 FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLS 60 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + AWR + + Sbjct: 61 KDELQ-----------------------------------------PIVDAWRAANPNIV 79 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576 +LW+++ A + I G + R + +K L + LPSGR L Y +G N Sbjct: 80 QLWHDVDNAATRAISTGSPVTLRN------LGFEKKSGMLFINLPSGRRLAYVKPGIGMN 133 Query: 577 RSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629 R + T R+ + TYGGKL ENIVQA +RD+L E + AG IV+ +H Sbjct: 134 RFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIH 193 Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 DE+V + P + + L+ P GLP+ A GYE Y+K Sbjct: 194 DEVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239 >gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] Length = 908 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 104/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + ++ S L R + N Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1] gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1] Length = 965 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 111/610 (18%), Positives = 201/610 (32%), Gaps = 87/610 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMPQV-----LKEALENT 64 D G +D L P V L + +P+ L+ + Sbjct: 383 DTETRGTNPLRDD----LVGIALATIPGSGWYVPLGHTTGEAQLPRERVIAALRPFFADP 438 Query: 65 DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA-LKLSSQK 122 + +AHN+ F+ VL+ IP+ +LA + LK + L L++ Sbjct: 439 ARSRIAHNAKFDIEVLERA---GIPVAGVAFDTMLAAALLDKRRNLKDLAFYELNLAAP- 494 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 +E + LI + T Y D +T + LE Sbjct: 495 LESIEALIGKGKNQVT----------FADVPIARATPYAAADADMTLRLKPALEAKLRAA 544 Query: 182 ----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 E L + + G +DV L + + E +++Q++ ++ G Sbjct: 545 GSVADVFYRLEMPLVPVLVRMEQAGILLDVPYMRALGERMGRELEQIEQQIYAIA-GQTF 603 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L LF +L T R + LT QA++ Sbjct: 604 NINSGDQLSEVLFG----PKINLPTTGLDRTRTGRYSLTAQALEEL-------------- 645 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +A ++ G + L+ S+ P P R H + +Q+ + Sbjct: 646 ----QASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAATGRLSS 701 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + P+ I VR IA+ G L+ AD + IE RVLA M G+ ++ F G Sbjct: 702 NSPNLQNIPTRTEEGREVRRGFIAAPGHLLIAADYSQIELRVLAHMTGDPNLIQTFIEGR 761 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T AR F V + V K+QR I K + + Y +A G++ L+ Sbjct: 762 DIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIYGISPF---GLAQRLGISREQARGLI 818 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW--RQKHSRVSELWNEL 524 + D R + + + ++ + R + + R R Sbjct: 819 DS------LFDQFPRIRDYIDRTLDIGRSEGYVQSLFGRRRPMFDLRVSGPRRQA---AE 869 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A I++ A I + +++ + ++L L++ Sbjct: 870 REAINHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIF----EAPEAEVDDV 925 Query: 585 RQLTREYTYG 594 L RE G Sbjct: 926 VALVRERMEG 935 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 17/141 (12%) Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTRQLTREYTYGGKL 597 AR D + ++ + L GRS Y G R + R+ + Sbjct: 814 ARGLIDSLFDQFPRIRDYIDRTLDIGRSEGYVQSLFGRRRPMFDLRVSGPRRQAAER-EA 872 Query: 598 TENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHL 650 + +Q+ + DI+ M+ ++L VHDE++ E P+ + + +++ Sbjct: 873 INHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIFEAPEAEVDDVVALVRER 932 Query: 651 MTSN-----PSWAKGLPLKAE 666 M P +A +PL+ E Sbjct: 933 MEGVLHGMEPPFA--VPLRVE 951 >gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40] Length = 908 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + K+ S L R + N Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] Length = 908 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + K+ S L R + N Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896 >gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] Length = 867 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 111/631 (17%), Positives = 200/631 (31%), Gaps = 141/631 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKA 111 + L++ ++ + ++I + + L LA P+ LK Sbjct: 350 ESFLAYLKDETKKKYGYDIK-SAVIGSRWNGVEI--NGYTFDLSLASYVLEPAIKEELKY 406 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 V + +E F KG D H + K VT + Sbjct: 407 VCTHFDYDGVQYDE-----EVFGKGAKKHIPDDALLAQHTVSKAKAIYELKDVVTKELKD 461 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 K+ E E + + + G +D+ + +++ D KL ++ ++ G Sbjct: 462 KKQYELYEDIELPVTRILGEMEFAGTEIDLDVLKEMDEAFDETIEKLSNDIYRIS-GTTF 520 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF + GL T+T Q VL P V RM Sbjct: 521 NISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQDVLEKIIDAHPVVPLVLEYRML------ 574 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 ++ Q P + H Q +TH Sbjct: 575 -------------------------TKLSSTYLKGLQEQVFPDN-KIHTIYKQTLTHTGR 608 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R ++ G LV D + IE R+LA MA + AF Sbjct: 609 LSSVDPNLQNIPVRSEEGKLIRKAFVSHNGY-LVSFDYSQIELRILAHMAHVTNLIDAFN 667 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T A F V +VT R+ K + + Y +++ G+++ Sbjct: 668 QGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNFGIIYGMSEF---RLSKDIGMSI---- 720 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 +A NF E +PE + T + V + ++ Sbjct: 721 ------------AEARNFINKYFETYPE-------VKTYMDEVVEVCKK----------- 750 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + + + ++R +P + DKN ++ R +NT Sbjct: 751 ---------QGYVSTLLNRKRYIPTI---NDKNFMVRQ------------QAQRYAMNTP 786 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637 +Q DIL M+ KA ++L VHDE++ + Sbjct: 787 ------------------IQGTGADILKLAMIEVDKALKVHHLKSQMILQVHDELIFDVF 828 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + E S++ M + +PL EG Sbjct: 829 EDELEEVMSLVKEKMENCIK--MDVPLIVEG 857 >gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN] gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN] Length = 913 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 97/520 (18%), Positives = 169/520 (32%), Gaps = 80/520 (15%) Query: 39 DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98 D PV+ D V+ LK LE+ + V + ++ VL I TL+ Sbjct: 377 DAPVQ---LPRDEVL-ARLKPWLESAEHKKVGQHLKYDEQVLANYGIEMRGIE--HDTLL 430 Query: 99 LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158 + AL+ K + +E+ + A Sbjct: 431 QSYVVESHRTHDMDSLALRHLGVKTIKYEEVAGKGAGQ----------IGFDEVALDKAA 480 Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTL 207 EY D +T + + L P + E+ L Y+ + I G +D Sbjct: 481 EYAAEDADITLRLHQALYPQVTAEKTLEYVYRAIELPTSRVLRKMERTGVLIDAEKLRLQ 540 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVL 263 + + +L+ E L G + +++ F + L + +T + VL Sbjct: 541 SSEIATRLIQLESEAYVLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVL 599 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + +R G S+ Sbjct: 600 QKLAEDYPLPKILLEHR-------------------------------GLSKLKSTYTDK 628 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVV 378 P R H Q + ++DP+ I +R IA G KLV Sbjct: 629 LPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVS 688 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ L+AF GED++ T A F+V P +V+ DQR + KV+ Sbjct: 689 ADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFG 748 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y + +A+ G+ + + + R+M E A + Sbjct: 749 LIYGMSSF---GLAANLGITRDAAKLYID-----RYFARYPGVARYMDETRV-SAKAKGY 799 Query: 499 IGTACERVKKAW-RQKHSRVSELWNELHQAFEQTIENGKA 537 + T R + W + + +A G A Sbjct: 800 VETVFGR--RLWLPEINGGNGPRRQAAERAAINAPMQGTA 837 >gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] Length = 908 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 105/690 (15%), Positives = 215/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNIFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + K+ S L R + N Sbjct: 782 -----------------------IINQINFVKNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRA 896 >gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302] gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302] Length = 680 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 96/551 (17%), Positives = 169/551 (30%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P V + ++L L EQ L ++ + Sbjct: 234 GVKKAIPERETFLEHLARKVAVLVETEPVLLEKLSENGQLNLLYDMEQPLAFVLAKMEIA 293 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + ++ KL QE+ L G + ++L LF G +E Sbjct: 294 GIKVKKETLLEMQAGNELVIEKLTQEIYELA-GEEFNINSPKQLGELLFENLGFPIEYTK 352 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 353 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 405 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 406 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 440 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 441 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 500 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 501 VTPNDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 544 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 545 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 573 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 574 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 600 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ + M Sbjct: 601 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAAIKKIVKQTMEEAI 660 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 661 Q--LSVPLIAD 669 >gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] Length = 875 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 91/619 (14%), Positives = 182/619 (29%), Gaps = 139/619 (22%) Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQKME 124 T V +++ + + I ++LA PS A++ ++E Sbjct: 366 TKVVYDAKKTMVAMNR---MGFAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVE 422 Query: 125 EGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + + + K E + + A + D E ++L + E Sbjct: 423 TDEAVYGKGAKRSTPEESIVAGHLARKAVAIAELEKRLVDD----LEKNEQLALMEDLEL 478 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L ++ + +G VD + + L+ + SL G + ++L L Sbjct: 479 PLTFVLAQMEMQGVSVDTERLENMKVELAGRLKTLETSIHSLA-GEEFNINSPKQLGVIL 537 Query: 244 FLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 F + L T+T T VL S ++ R Sbjct: 538 FEKLELPPVKKTKTGYSTAADVLESLSGKHDIIDEILLYRQL------------------ 579 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 G+++ T T + + H +Q +T + DP+ I Sbjct: 580 -GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQNIP 626 Query: 361 -----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ T Sbjct: 627 IRLEEGRKIRQVFVPSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAM 686 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F+V +V R K + + Y + G+ + Sbjct: 687 DVFHVEQEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFVSYP 743 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + A E ++ T R R+ + Sbjct: 744 ------AVKEYMHDIVRFAKEKGYVETILHR-----RRYIPEIVS--------------- 777 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 R+ R R+ +NT Sbjct: 778 -------------------------------RNFNVRGF-AERTAMNTP----------- 794 Query: 595 GKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648 +Q + DI+ + M + + + ++L VHDE++ E P+ + + Sbjct: 795 -------IQGSAADIIKKAMILMSERLESEQLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847 Query: 649 -HLMTSNPSWAKGLPLKAE 666 +M + +PLK + Sbjct: 848 PDVMENAVE--LSVPLKVD 864 >gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] Length = 908 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 110/650 (16%), Positives = 198/650 (30%), Gaps = 144/650 (22%) Query: 39 DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D DP + L L + V H + + + Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAKL---AIHDLQGRGWTLAGVTSDT 423 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 LA P + L + K + + L D + +A + Sbjct: 424 ALAAYLVRPGQ-----RSFALDDLSLRYLKRELRADNPEQQQLSLLDDSDGVDDQAVQTL 478 Query: 158 GEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 V + + + L L + E + + + G VD+ + L Q Sbjct: 479 LLRASAVVDLADALDEELARIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGL-QSE 537 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 ++ + E G + ++L+ LF E + T+T + + L Sbjct: 538 FADQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLFD 597 Query: 272 QAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + F + A R A + ++ L+ A+ SDGR+ T Sbjct: 598 KTGHPFLQHLLAHRDATRLKVTVDGLLNAVASDGRIHTT--------------------- 636 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLA 382 +Q I +++P+ I +R + +G +L+ AD + Sbjct: 637 ----------FNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYGELMTADYS 686 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ ++ ++AF TGEDL+ +R+F+V +VT + R K M L Y Sbjct: 687 QIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAYG 746 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A + + Sbjct: 747 LSAYGLSQQLKIS----------------------------------------------- 759 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 E K+ Q +R + + L +Q ++G RR L Sbjct: 760 TEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRY---------------L 804 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 P S + + RE L I Q + DI+ M+N +A Sbjct: 805 PELDS----------------SNRQVREAAERAALNAPI-QGSAADIIKVAMINVDQAIK 847 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 +L VHDE++ E D + L M S ++A +PL+ Sbjct: 848 DAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGS--AYALDVPLEV 895 >gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] Length = 884 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 111/662 (16%), Positives = 215/662 (32%), Gaps = 148/662 (22%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 VI AFG ++ V + D V +V K+ L + V ++ VL F D Sbjct: 337 AEVIAVAFG-NEKNVFVTDL-DTAVASEVFKKWLSDASVEKHLFDTK-AAKVLAHRFGFD 393 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + ++ +LA +K + + + + E + + KG + D+ Sbjct: 394 LKGAKY-DVSLLAYLVDTNDIVKEISDVARRVDVTILSSDEAV--YGKGVKIQIPEDKEV 450 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDV 201 N A ++F ++ KRLE E L + + +G VD Sbjct: 451 WNQHLAAKVFTI-----AKAPEKLLKRLEENEQTHLYWEMELPLSDILARMEIQGIRVDR 505 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + + +++QE+ L G + ++L LF + GL + T+T Sbjct: 506 ERLVEMGVEFEERLKEIEQEIYELA-GEEFNINSTKQLGVILFEKMGLPVIKKTKTGYST 564 Query: 262 ---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL P + R A ++ + L + D Sbjct: 565 AVDVLEKLAHQAPIVELILEYRQLAKLNST-YVEGLQAYIQED----------------- 606 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 + H Q +T + DP+ I +R + + Sbjct: 607 --------------GKIHTRFIQNLTQTGRLSSVDPNLQNIPIRTKEGRRIRYAFLPEHD 652 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 K++ +D + IE RVLA +AG++ ++AF+ D++ T R F ++ P VT + R Sbjct: 653 DWKILSSDYSQIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQ 712 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + ++ + + + + E+ + Sbjct: 713 AKAVNFGIVYGISDYGLSQ---NLNISRKRAKEFID------RYLEEFQGVKDFMESIVK 763 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 A E ++ T +RR +P ++ Sbjct: 764 EAREKDYVETLF-------------------------------------HRRRYLPDIHS 786 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 + RS R+ +N+ +Q + DIL Sbjct: 787 SNF---------NLRSFA------ERTAMNSP------------------IQGSAADILK 813 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLK 664 M+ + +++L VHDE++ E P + + L +M + S +PL+ Sbjct: 814 MAMIELDREMRERKFKANLLLQVHDELIFEVPQDELESLQSLVEGVMENAVS--LKVPLR 871 Query: 665 AE 666 A+ Sbjct: 872 AD 873 >gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 223 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 7/215 (3%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 LF D ET S I + CG +YAE+ ++LFA+ ++ PV++WD D MP+ LK L++ Sbjct: 10 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68 Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121 ++ V HN F+ +LK N+D+P+ R TLV A ++GLP AL ++ + ++S Sbjct: 69 PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128 Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 K +EGK LI FCK R H E W F Y D+ REI++ L + Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188 Query: 180 S--KEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 E LW LDQ IN RG C+DV LA + V+ Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELAKSALTAVE 223 >gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4] gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4] Length = 934 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 99/650 (15%), Positives = 200/650 (30%), Gaps = 141/650 (21%) Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ DD+ L D +++AL++ + H+ ++L + Sbjct: 402 TLMAGLAADDNTALLLDLNAPEA--TAIRDALKDPALPKTTHDLK---SLLHTAGQRGLE 456 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-KP 148 I ++L P S K+ + + + P Sbjct: 457 IANVAHDVMLYSYLINP----------THGSHKLADVAARMGQSITPLVKNQTPPATALP 506 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 A + + L+P + L + + G +D + ++ Sbjct: 507 EAASAIHRLAP--ALRIQAEEG--ELLKPYEEIDLPLVPVLLRMEQVGCRIDSQVLRDMS 562 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVL 263 + V+ L + + +++ G + ++L LF + L T Q VL Sbjct: 563 SKLAVDMDALAERIYAMS-GHRFNINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVL 621 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 V R A + Sbjct: 622 EELAAHHEAPALVLEYRQLAKLRSNYTEQL------------------------------ 651 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVV 378 PQ R R H +Q+ T +++P+ I + +R+ I +EG L+ Sbjct: 652 --PQLADREGRVHTTFNQVGTATGRLSSTNPNLQNIPTRTALGREIRAAFIPAEGNVLLS 709 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A + + L A+ TG+D++ T A F V P + K+ R K + Sbjct: 710 ADYSQIELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFG 769 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 + Y +A+ G+ ++ Sbjct: 770 IVYGISPF---GLAAQLGIPQGEAKLYIE------------------------------- 795 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK-AIIARKRRDVPLVYMKKDKNN 557 +R++++ V+ + + T GK + + + R +P + + Sbjct: 796 ----------RYRERYAGVTAF---IERTISDTRSTGKVSTLFGRTRPIPDIGSRN---- 838 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 P+ R R+ +NT + G + I A+ + + + Sbjct: 839 -----PNQRGFA------ERTAVNTPLQ---------GTAADMIKIAM---LKIDAALTE 875 Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 K + L VHDE++ + P + + L L M S +P+ AE Sbjct: 876 RKLATRMTLQVHDELLFDAPVGETEEVAALVKLEMEGVVS--LSIPIVAE 923 >gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 416 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 89/516 (17%), Positives = 174/516 (33%), Gaps = 130/516 (25%) Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E ++L+ + E+ L + + G VD T+ + ++L+QE+ + Sbjct: 3 ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEA- 61 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L LF + L + T+T VL + ++P + R A Sbjct: 62 GEEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 121 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L++ ++ + ++H Q +T Sbjct: 122 IQSTY-IEGLLKVVSK------------------------------KDGKAHTRYTQTLT 150 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 + DP+ I +R + S G ++ +D + IE RVLA ++ ++ Sbjct: 151 STGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNM 210 Query: 399 LKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF+ G D++ +T R FNV P +VT + R K + + Y + G+ Sbjct: 211 QEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NIGI 267 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + T + D + + E E A E+ ++ T Sbjct: 268 SRKQAKQFIDT------YLDTFSGVKDYMEKIVEFAKENGYVETIFN------------- 308 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +RR +P + + + RS R Sbjct: 309 ------------------------RRRYLPDIKSRNF---------NLRSFA------ER 329 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 + +N+ +Q + DI+ M+N ++L VHDE Sbjct: 330 TAMNSP------------------IQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDE 371 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ E P + M+ +M S +PLK E Sbjct: 372 LIFEAPTKEIPLLEDMVPKVMDSAVK--LDVPLKVE 405 >gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] Length = 931 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 96/639 (15%), Positives = 177/639 (27%), Gaps = 150/639 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +LK LE+ V + N ++ + + + + A++ G Sbjct: 407 DLLKPVLEDPAVLKIGQNMKYDAKIFARY-GVKVAPFDDTMLMSYAQNAG-KHNHSMDSL 464 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + + K L+ G + P +Y D VT +++ Sbjct: 465 SERYLGHSPISIKTLL-----GTGKSAITFDKVPVAD-----AVKYAAEDADVTLRLWQF 514 Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L PL E+ L + + G VD ++ + L+ E+ Sbjct: 515 LGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDTLSRMSNAFAQKMAGLEAEIHE 574 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280 G + ++L LF + L +T T +L V + R Sbjct: 575 KA-GQSFNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGADILEDLATEHELPALVLDWR 633 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ R H Sbjct: 634 QL-------------------------------SKLKSTYTDALQDHINAETGRVHTSYS 662 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + ++DP+ I +R +A EG L+ D + IE R+LA +A Sbjct: 663 IAGANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAKI 722 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF G D++ T ++ FNV + R K + + Y G F +A Sbjct: 723 DALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAINFGVIY--GISGF-GLARNL 779 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + +A+ F E P R Sbjct: 780 RIPR----------------AEAQAFINTYFERFP------------------GIRTYMD 805 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 E A++ V ++ +K + P + Sbjct: 806 ETVEF-------------------AKEHNFVQTLFGRK------IHTPDINAKGPGAGFA 840 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631 R+ +N +Q + D++ M+ A ++L VHDE Sbjct: 841 KRAAINAP------------------IQGTAADVIRRAMIRMPAAIKDLPAKMLLQVHDE 882 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 +V E + E + + +M + A +PL + Sbjct: 883 LVFEVAEDAVEDVTNAVRKVMENAAEPAIKLTVPLTVDA 921 >gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4] gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4] Length = 875 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 99/601 (16%), Positives = 190/601 (31%), Gaps = 138/601 (22%) Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR----FCKGETHEC 141 D+ + L++A PS + LS +G + I + KG + Sbjct: 382 KDVLLDGVDFDLLMASYLLDPSH-----SSHDLSDIATRKGAKSIQADEAVYGKGAKRKV 436 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 H K + + ++ E E L + + G VD+ Sbjct: 437 PETDVLAEHLVRKANVIYELKERMEEELKKNEQFELFKDLEMPLSVVLGRMETEGVKVDI 496 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + + + +L++ + G+ + ++L LF + GL + T+T Sbjct: 497 DQLKAMGEDLASRLAELEKHIHEHA-GVSFNINSPKQLGEVLFEKLGLPVIKKTKTGYST 555 Query: 262 ---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + + + R + + LV+ + Sbjct: 556 SADVLEKLAEDHEIIRHILHYRQL-GKLNSTYIEGLVKVTHKG----------------- 597 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE- 372 S+ H +Q +T ++DP+ I +R I SE Sbjct: 598 -------------TSKIHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFIPSEE 644 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G K++ AD + IE RVLA +A ++ + AF+ D++ T F+V+ VT R Sbjct: 645 GWKILAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEEDVTSMMRRSA 704 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + + G+ A ++ N +M E E Sbjct: 705 KAVNFGIVYGISDYGLSQ---SLGITRKEAAKFIE-----RYLASYPNVAEYM-ERIIEE 755 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 A E+ ++ + + +RR +P + + Sbjct: 756 ARENGYV-------------------------------------STLLNRRRYLPELTSR 778 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 RS R+ +NT +Q + DI+ + Sbjct: 779 NFNQ---------RSFA------ERTAMNTP------------------IQGTAADIIKK 805 Query: 613 GM----MNATKAGY--DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M + +A ++L VHDE++ E P + + +M + A +PLK Sbjct: 806 AMVEMALRLEEANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENAVELA--VPLKV 863 Query: 666 E 666 + Sbjct: 864 D 864 >gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334] gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334] Length = 889 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 443 GVKKALPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIA 502 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + ++ KL QE+ L G + ++L LF + GL LE Sbjct: 503 GITVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 561 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 614 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 615 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 649 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 650 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 709 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 710 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKSYIDTYF------------- 753 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 754 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 783 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 809 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 810 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 869 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 870 Q--LSVPLIAD 878 >gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] Length = 882 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 97/525 (18%), Positives = 162/525 (30%), Gaps = 126/525 (24%) Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 +T + E + E L + + G VDV + T + Sbjct: 457 AAAIMELAEKLTTELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQ 516 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 + ++ L + ++L+ LF + T+T ++L + Sbjct: 517 VAEQERSARELAGDDKLNLNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHP 576 Query: 275 QVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 F + + A R L L++ + DGR+ Sbjct: 577 HPFLDHLLAHREYQKMKTTLEGLIKTVQPDGRI--------------------------- 609 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIE 385 H +Q +T +++P+ I +RS I EG ++L+ AD + IE Sbjct: 610 ----HTTFNQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIE 665 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 RV+A ++ + ++A++ GEDL+ +R F+V QVT + R K M L Y A Sbjct: 666 MRVMAHLSADPGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSA 725 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + +G Sbjct: 726 FGLSQQ-----------------------------------------------LGIPAGE 738 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 K R + L EQ ++G RR LP Sbjct: 739 AKSIMESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRY---------------LPE- 782 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI- 624 LN+ R L RE L I Q + DI+ M+ +A D+ Sbjct: 783 --------------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALRDMK 826 Query: 625 ---VLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +L VHDE+V E P + +L M S +PL+ Sbjct: 827 SRVLLQVHDELVVEVAPGEADQVREILEREMDSAIE--LNVPLEV 869 >gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] Length = 885 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 113/687 (16%), Positives = 211/687 (30%), Gaps = 166/687 (24%) Query: 21 ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVAHNSYFE 76 + Y ED V + A+ ++ V P M L E + V H + Sbjct: 327 VYAYREDDRVWVAAY-IGG----VYYFVEKPAMVSAFFSGLGEIPEADSLQTVGH----D 377 Query: 77 RTVLKACFNLDIP-IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 L ++ I + + PS + L + M+ + I Sbjct: 378 LKNLTHIYHSQCSVIVNYTFDTYIGAYLLNPS-----DQRYDLQTVAMKYLGDTIQ---- 428 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------E 182 + E + R K R V I + +PL+ K E Sbjct: 429 --SEEDFFGRGKTLVRAEDMDSARLAAFMVKNCEVIHRLEKPLAEKIEADGMTGLFQNIE 486 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + ++ + G+ VD+ L+ + + L E+ L + ++L T Sbjct: 487 LPLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELAEEDDFNINSTKQLGTI 546 Query: 243 LFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + L + T+T VL P ++ + RM Sbjct: 547 LFDKLKLPVVKKTKTGYSTNAEVLDQLVLFHPIIQKIIDYRM------------------ 588 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 S+ G P+ + + +Q +T +SDP+ I Sbjct: 589 -------------ISKLDSTYGKGLIKLVDPKTHKIYSTFNQTVTATGRLSSSDPNLQNI 635 Query: 360 I-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R + S G + LV AD + IE RVLA ++G++ + F +D++ T Sbjct: 636 PVKTEMGREIRKVFVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTA 695 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + FNV V+++QR+ K + L Y A + G+ + Sbjct: 696 SEIFNVPMDAVSREQRSHAKAINFGLIYGKQAFSL---GKDLGITRGEAQSYID--LYFS 750 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + ++ E V+ +W Sbjct: 751 RYPKVLEYMENIKAEAKEKG----------------------YVTTIW------------ 776 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR + + + R+ + G R LNT Sbjct: 777 -------GRRRYITEI--------------NSRNRMLVQAGE-RMALNTP---------- 804 Query: 594 GGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEIVCETPDTDEFNA-SM 646 +Q + DI+ M+ + G ++L VHDE++ +T T++ + Sbjct: 805 --------IQGAAADIIKIAMIKVYDRLEREGLKSKLILQVHDELIIDTLKTEQETVMKL 856 Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673 L M + +PL + + + Sbjct: 857 LVEEMENAVD--LKVPLTVDAHAGDSW 881 >gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353] Length = 880 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 113/677 (16%), Positives = 210/677 (31%), Gaps = 171/677 (25%) Query: 28 VCVI--------LFAFGFDDHP---VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 ++ + + D V D + P+ L + T A Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVGTSDLLQQPLFQDFLSKTALKTYDLKRA------ 379 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCK 135 VL + + +++P LA+ + +L Q + E+ + K Sbjct: 380 -KVLLSHYGIELPA--AAFDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK 436 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLD 189 R P+ + + + + + ++L L EQ L ++ Sbjct: 437 ---------RALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVL 487 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + G V+ + + L QE+ +L G + ++L T LF + L Sbjct: 488 AKMEIAGIKVERETLQGMQAENEKTLESLTQEIYNLA-GQEFNINSPKQLGTILFEDMRL 546 Query: 250 HLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 LE T+T VL + P ++ R S+ + L EA+ +DG+ Sbjct: 547 PLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGK- 604 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 H Q +T + DP+ I Sbjct: 605 ------------------------------IHTRYVQDLTQTGRLSSVDPNLQNIPVRLE 634 Query: 361 -SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R + L+ +D + IE RVLA ++ ++ + AF+ GED++ T R F Sbjct: 635 QGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFG 694 Query: 419 VA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477 + VT + R K + + Y +A+ G++ ++T Sbjct: 695 IERAEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKDYIETYF------- 744 Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-K 536 R + N + + + G Sbjct: 745 -------------------------------------ERFPGIKNYMETIVREARDKGYV 767 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 I +RR +P + + R+ R+ R+ +N+ Sbjct: 768 ETIYHRRRSLPDI--------------NSRNFNIRNF-AERTAINSP------------- 799 Query: 597 LTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML-YH 649 +Q + DIL M+N +A ++L VHDEIV E P+ + L Sbjct: 800 -----IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKE 854 Query: 650 LMTSNPSWAKGLPLKAE 666 M + A +PL A+ Sbjct: 855 TMEAAIELA--VPLVAD 869 >gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] Length = 888 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 101/631 (16%), Positives = 204/631 (32%), Gaps = 141/631 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAV 112 LK+ L++ V N+ + L L IP+ L+LA + L V Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR---LGIPLENINFDLLLASYLLNTNDNSNDLGQV 422 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + +E E+ + K D +H E+ + D + Sbjct: 423 AQEHGYDDVRTDE--EVYGKGAK--RAVPDDDETFFSHLATKARAIEHLRKDFFAKLDEN 478 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 K+ + E L + + G VD + + ++++ ++ G + Sbjct: 479 KQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEA-GEEFN 537 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T VL +P Q+ R A + Sbjct: 538 INSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQIAKLQSTY 597 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ ++S+ + H Q +T Sbjct: 598 -ITGLLKVIHSND------------------------------QKIHTRYLQTLTQTGRL 626 Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R + S EG ++ +D + +E RVLA + G++ + F+ Sbjct: 627 SSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFK 686 Query: 404 TGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ +T R F++AP ++ ++ R K + + Y +A ++ Sbjct: 687 NGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDY---GLAQRIHVSRAEA 743 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++ + E+ + + E+ + Sbjct: 744 HEFIQ--NYFHEFPGVKKYINDTIAFAKENGYVE-------------------------- 775 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 I +RR +P ++ K S RS R+ +NT Sbjct: 776 ---------------TITHRRRYLPDIHAKSF---------SKRSFA------ERTAMNT 805 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636 +Q + DI+ M+ ++L +HDE+V E Sbjct: 806 P------------------IQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEA 847 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 P + + ++ +M S +PLK + Sbjct: 848 PKEEIPILSELVPKVMDSAVK--LDVPLKVD 876 >gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1] gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1] Length = 1022 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 99/621 (15%), Positives = 190/621 (30%), Gaps = 153/621 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113 LK LEN ++ + + ++ VL L++ W +LA +A Sbjct: 488 LKPILENPNIGKIGQHLKYDAHVLSKYGIELNMSPKNWEMDTMLASYVLNAAATRHSMDD 547 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K T + + A + +Y D +T ++F+ Sbjct: 548 LARHYLHTQTISFEDVAGKGAKQVTFDKV----------AINIASDYACEDADITYQLFE 597 Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 + L E + + + G + + + L++ D E L+++ Sbjct: 598 LFQDKLKDDAVNQRLLHELEIPVAQILCQMESEGIMIKRSFLNELSERFDEEIVALEKQA 657 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 + G + ++L LF + G+ T++ T + VLS + P A Sbjct: 658 Y-IEAGEAFNLGSPKQLGEMLFDKLGVIGGKKTKSGQYSTGEAVLSKIE--HPLAEIALE 714 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A ++A+ + R H Sbjct: 715 YRSLAKLKNT--YTDALDAVADND-----------------------------TDRVHTS 743 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R IA +G+ L+ AD + IE R++A + Sbjct: 744 YHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQAFIAPKGRVLLAADYSQIELRLMAHFS 803 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ +AF G D++ T A + VT +R K + L Y A K Sbjct: 804 GDDNLTRAFNEGLDIHSATAAEVLGKSVDDVTPTERRNAKAINFGLLYGMSAFGLAKQIQ 863 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 +A+++ +P +R + R Sbjct: 864 -------------------MGRSEAQDYINQYFARYP-----------GVQRYMQETRN- 892 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + + + +TI GR L D+ Sbjct: 893 --------SAVDNGYIETIL-------------------------------GRKLYTPDI 913 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629 + Q+ R +Q + D++ M+ K ++L VH Sbjct: 914 --------QHSNQMVRRGAERA-AINAPLQGSAADLIKLAMIAVDNVLPKQNAKMLLQVH 964 Query: 630 DEIVCETPDTDEFNASMLYHL 650 DE+V E + L Sbjct: 965 DELVFEVDAD---KVDHIAKL 982 >gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] Length = 897 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 90/638 (14%), Positives = 190/638 (29%), Gaps = 135/638 (21%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 + + + K E+ ++ H+ LK I ++ ++ P Sbjct: 366 LTENEFL-EGFKSIFEDGEIKKYGHDLKNFIVYLKQ---NGIELNGVAFDTMIGAYIINP 421 Query: 107 SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 S L + ++ +E+ + + N + Sbjct: 422 SRETYTISELAADFLNTNVKPIEEMAGKGKSFLPFGSMDVEELKNVVGLYPEIIYKAMKK 481 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + +L E L + + G+ +++ +++ +D + +L ++ Sbjct: 482 IDDKLNENDQLNLYYKIELPLVRVLADMEFYGFKININELTVISRQLDEKINQLTLKIYE 541 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF + L + T+T VL + + R Sbjct: 542 LA-GEEFNINSPKQLGVVLFEKLELPIIKKTKTGYSTDAEVLEELAEKHEIVSNILEYRQ 600 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + A+ P + H +Q Sbjct: 601 LVKLKST--YIEGLMAV-----------------------------INPHTGKIHSSFNQ 629 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGE 395 +T +++P+ I +R + +G KLV AD + IE RVLA + + Sbjct: 630 TVTVTGRISSTEPNLQNIPIKLEMGRNIRKAFVPCDGNYKLVDADYSQIELRVLAHITDD 689 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF ED++ +T ++ F V +VT R+ K + + Y G + Sbjct: 690 ENMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAVNFGIVYGIGDFSLS---KDL 746 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + + D R + E F+ Sbjct: 747 GITRKEARNYIDG------YLDKYANVRKYMHDIVAQGKEFGFV---------------- 784 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + +RR +P + + R G Sbjct: 785 ---------------------TTMFNRRRYLPELKAS--------------NFNVRSFGE 809 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVH 629 R +NT +Q + DI+ M +N + ++L VH Sbjct: 810 -RIAMNTP------------------IQGSAADIIKIAMVMVHSELNRRQLKSRLILQVH 850 Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 DE++ E +++ +M+ M + A +PL + Sbjct: 851 DELIIEAHESELEEVTMILKESMENAT--ALKVPLSVD 886 >gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 876 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 87/547 (15%), Positives = 161/547 (29%), Gaps = 135/547 (24%) Query: 142 LYDRNKPNHREAWRLFGEYCK---------GDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 R P+ D + R RL L+ EQ L + + Sbjct: 432 GAKRTVPDEPTLAEHLARKAAAIWALEEPLMD-ELRRNEQDRL--LTELEQPLAGILANM 488 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + + +++ + L G + ++L T LF + L + Sbjct: 489 EFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA-GQEFNINSPKQLGTVLFDKLQLPVL 547 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T+T +KL P V L + Sbjct: 548 KKTKTGYSTSADVLEKLAPHHEIVE----------------------------HILHYRQ 579 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 + P + H +Q +T + +P+ I +R Sbjct: 580 LGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQA 639 Query: 368 VIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + SE + AD + IE RVLA +A + ++AF G D++ T F+V+ VT Sbjct: 640 FVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTA 699 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A + A + E + + + Sbjct: 700 NMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEFI------ERYFASFPGVKQYM 750 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +N + A + ++ T R R+ ++ Sbjct: 751 DNIVQEAKQKGYVTTLLHR-----RRYLPDITS--------------------------- 778 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 R+ R R+ +NT +Q + Sbjct: 779 -------------------RNFNVRSF-AERTAMNTP------------------IQGSA 800 Query: 607 RDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 DI+ + M++ + ++L VHDE++ E P + L +M A Sbjct: 801 ADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAV--AL 858 Query: 660 GLPLKAE 666 +PLK + Sbjct: 859 RVPLKVD 865 >gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] Length = 876 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A F+ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278] gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278] Length = 1034 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 107/630 (16%), Positives = 201/630 (31%), Gaps = 132/630 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115 LK LE+T + + +N F +L I + L+++ + + K A Sbjct: 508 LKPVLESTGLLKIGYNIKFLAVLLAQH---GITLQNVDDILLMSYALDAGRGSHKLDSLA 564 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + + ELI + A + V +++ L Sbjct: 565 EHVLAHAIISEGELI----------GSGKNKLTFEQVAIDRATAHAAEAADVIHRVWRVL 614 Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +P + E+ L + + RG +D + L+ +++ EL+ L Sbjct: 615 KPRLTAERMTAVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAELQEL 674 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + +++ LF + GL T+T +S + Sbjct: 675 A-GEPINVGSPKQIGDILFGKMGLSGGTRTKTGAWSTSASILDDLAE------------- 720 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + R L++ S+ P P+ R H T Sbjct: 721 -------------QGNDFARKILEWRQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATT 767 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R IA+ G KLV AD + IE R+LA +A + Sbjct: 768 TGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQ 827 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ G D++ T + F V + + R K + + Y A +A+ G+ Sbjct: 828 AFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAF---GLANQLGIAR- 883 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 E+A + + E P I + ++ R+ + V L Sbjct: 884 ---------------EEASAYIKRYFERFP-------GIRAYMDETREFCRK-NGYVVTL 920 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + ++ P + S R+ R N R Sbjct: 921 F-------------------GRKCHYPEIKASNA---------SVRAFNERAAINARL-- 950 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640 G + I +A++R E + K ++L VHDE++ E P+ + Sbjct: 951 -------------QGTAADIIRRAMTR---VEEALAQKKLSAQMLLQVHDELIFEVPEDE 994 Query: 641 -EFNASMLYHLMTSNPSWA--KGLPLKAEG 667 ++ H+M P A +PL + Sbjct: 995 VAATLPVVQHVMQDAPFPAVLLSVPLHVDA 1024 >gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20] gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20] Length = 881 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 92/633 (14%), Positives = 184/633 (29%), Gaps = 154/633 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ + +++ L ++LA L ++ Sbjct: 365 LKDEERKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYL-----LDTNDTNNDIAG 416 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV----------TRE 170 G + I + + P E F + V Sbjct: 417 VAAHYGYDAIQ--SDEAIYGKGAKKGLPADEED---FFAHLARKVAAITNLTPKLTEELA 471 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E L + + G VD + H + ++++++ + G Sbjct: 472 AKNQTALFEEMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEA-GET 530 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + GL + T+T VL K+ P + R A + Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQIAKIQS 590 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ + DG++ H Q +T Sbjct: 591 TY-VEGLLKVIQGDGKV-------------------------------HTRYVQTLTQTG 618 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R + E + +D + IE RVLA ++ + +A Sbjct: 619 RLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEA 678 Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F G+D++ +T R F + VT + R K + + Y + G+ Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 735 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T + + + E+ A + ++ Sbjct: 736 AAQQYIDT------YFEKYPGVKTYMEDVVREAKDKGYVE-------------------- 769 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +RR +P + + R+ R R+ + Sbjct: 770 -----------------TLYHRRRYLPDI--------------NSRNFNIRTF-AERTAI 797 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 NT +Q + DIL M++ K ++L VHDE+V Sbjct: 798 NTP------------------IQGSAADILKIAMIDLVKRLKEEKLAATMLLQVHDELVF 839 Query: 635 ETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 E P+++ L +M A +PL + Sbjct: 840 EVPESELPRLDALVKEVMEQAV--ALHVPLLTD 870 >gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20] gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20] Length = 894 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 102/660 (15%), Positives = 192/660 (29%), Gaps = 154/660 (23%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVE--LW--DCVH---DPVMPQVLKEALENTDVTI 68 + K G L A PVE W D + + + K+ LE+ ++ Sbjct: 332 IDKTG------SFSQKLAAIAI--SPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKK 383 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 H+ L N I + ++ PS L K Sbjct: 384 YGHDLKNFIVYLN---NRGIDFNGLAFDTMIGAYIINPSKETYTISELA-QEYLNLSVKA 439 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------E 182 + KG++ D + ++ V+R+I L+ + + E Sbjct: 440 VEKLAGKGKSFTLFKDMQPDVLSKTVGVYPHVIS---KVSRKIDSLLKENNQERLYYDIE 496 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + G+ V+V ++ + + + +E+ +L G + ++L Sbjct: 497 LPLVRTLADMEYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLA-GEEFNINSPKQLGVI 555 Query: 243 LFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + GL + T+T VL ++ R Sbjct: 556 LFEKLGLPIIKKTKTGYSTDAEVLEELSDRHEIVEKILEYRQL----------------- 598 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 + P + H +Q +T +++P+ I Sbjct: 599 --------------VKLKSTYAEGLLAVINPYTGKIHSSFNQTVTATGRISSTEPNLQNI 644 Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 S +R I E L+ AD + IE RVLA + ++ + AF ED++ +T Sbjct: 645 PIKLEMSRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTA 704 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F + +VT R+ K + + Y G + A ++ + + Sbjct: 705 ASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSL---AKDLKISRKEARAYID--GYLD 759 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + E E F+ T R R+ + Sbjct: 760 RYPNVKK----YMHDIVEEGKEKGFVTTMFMR-----RRYLPELKS-------------- 796 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 R+ R G R +NT Sbjct: 797 --------------------------------RNFNIRSFGE-RVAMNTP---------- 813 Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M+ K ++L VHDE++ ET ++ + Sbjct: 814 --------IQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKI 865 >gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1] Length = 959 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 104/594 (17%), Positives = 189/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A G Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIG 800 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906 >gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7] Length = 956 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 104/594 (17%), Positives = 189/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 373 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 425 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 426 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 482 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 483 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 532 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 533 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 593 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 651 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 652 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 680 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 681 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 740 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A G Sbjct: 741 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIG 797 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 798 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 850 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 851 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 903 >gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC polymerase 1 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus] Length = 834 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 82/452 (18%), Positives = 151/452 (33%), Gaps = 68/452 (15%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191 L D + R +G D + +RL E++L +L Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLQGEEKLLWLYHEVEKPLS 440 Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + G +DVA L+ + E +L++E+ L G + ++L+ LF E Sbjct: 441 RVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499 Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L T+ T +R VL + ++ P ++ +R Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359 ++ P P R H +Q T +SDP+ I Sbjct: 541 ------------TKLKNTYVDPLPSLVHPNTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588 Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +R +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V P V R K + + Y A +++ + + E + Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + R E E + ++ T R ++ ++RV + + G Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A K V L ++ ++L L Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789 Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%) Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604 K + + L GR Y + G R + R + RE VQ Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 + D++ M + G ++L VHDE++ E P + L M A Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQAGAEEVAALAKEAMEKAYPLA- 816 Query: 660 GLPLKAE 666 +PL+ E Sbjct: 817 -VPLEVE 822 >gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] Length = 881 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 92/633 (14%), Positives = 183/633 (28%), Gaps = 154/633 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ +++ L ++LA L ++ Sbjct: 365 LKDEKRKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYL-----LDTNDTNNDIAG 416 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV----------TRE 170 G + I + + P E F + V Sbjct: 417 VAAHYGYDAIQ--SDEAIYGKGAKKGLPADEED---FFAHLARKVAAITNLTPKLTEELA 471 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E L + + G VD + H + ++++++ + G Sbjct: 472 AKNQTALFEEMELPLSMILAEMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEA-GET 530 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + GL + T+T VL K+ P + R A + Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQIAKIQS 590 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ + DG++ H Q +T Sbjct: 591 TY-VEGLLKVIQGDGKV-------------------------------HTRYVQTLTQTG 618 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R + E + +D + IE RVLA ++ + +A Sbjct: 619 RLSSVDPNLQNIPIRLEEGRKIREAFVPRETDWVIYSSDYSQIELRVLAHISDDTHLKEA 678 Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F G+D++ +T R F + VT + R K + + Y + G+ Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 735 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T + + + E+ A + ++ Sbjct: 736 AAQQYIDT------YFEKYPGVKTYMEDVVREAKDKGYVE-------------------- 769 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +RR +P + + R+ R R+ + Sbjct: 770 -----------------TLYHRRRYLPDI--------------NSRNFNIRTF-AERTAI 797 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 NT +Q + DIL M++ K ++L VHDE+V Sbjct: 798 NTP------------------IQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDELVF 839 Query: 635 ETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 E P+++ L +M A +PL + Sbjct: 840 EVPESELPRLDALVKEVMEQAV--ALHVPLLTD 870 >gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2] gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2] Length = 879 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 94/638 (14%), Positives = 199/638 (31%), Gaps = 142/638 (22%) Query: 53 MPQV-------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 +P+ KE E+ ++ L +++ ++LA Sbjct: 349 IPEETAVQSDCFKEWAEDESKKKWVFDAKRAAVAL-RWRGIEL--KGAEFDVLLAAYIIN 405 Query: 106 PS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 P + V K + E + + KG ++ +H + Sbjct: 406 PGHSYDDVASVAKEHQLHIVSADEAV--YGKGAKQAVPDEKELADHLARKAKAISLLREK 463 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + E ++LE + E L ++ + G VDV + + + + + ++++ Sbjct: 464 LLDELEENEQLELFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHE 523 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 + G + ++L LF + GL + T+T VL + + + R Sbjct: 524 -SAGETFNINSPKQLGVILFEKLGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQ 582 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ + D + H +Q Sbjct: 583 -IGKLQSTYVEGLLKVIKKD------------------------------SHKVHTRFNQ 611 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 +T ++DP+ I +R + S +G + AD + IE RVLA ++ + Sbjct: 612 ALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKD 671 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF D++ T F+V+ +VT R K + + Y + Sbjct: 672 KNLIEAFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQ---NL 728 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E + + + E + A + ++ T Sbjct: 729 GITRKEAAAFI------ERYFHSFQGVKEYMEETVQEAKQRGYVTTLLS----------- 771 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +RR +P + + + RS Sbjct: 772 --------------------------RRRYIPELTSRNF---------NLRSFA------ 790 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629 R+ +NT +Q + DI+ + M++ ++L VH Sbjct: 791 ERTAMNTP------------------IQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVH 832 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P+ + L +M +PLK + Sbjct: 833 DELIFEAPEDEIKVLEKLVPEVMEHALE--LDVPLKVD 868 >gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00] Length = 876 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A F+ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12] gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12] gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] Length = 881 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 92/621 (14%), Positives = 181/621 (29%), Gaps = 152/621 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + + +++ L ++L L ++ + Sbjct: 365 ITDPNRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYL-----LDTNEKSTDIEG 416 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLS 179 G I + + P E LF + V + +L L+ Sbjct: 417 IAAHYGYNDIQ--SDETVYGKGAKKGLPEEEE---LFFAHLARKVAAINALTPKLSQELA 471 Query: 180 SK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K E L + + G VD + +++Q++ G Sbjct: 472 DKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-GEE 530 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + GL + T+T VL ++ P + R A + Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQS 590 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ + SDG++ H Q +T Sbjct: 591 TY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQTG 618 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R + E + +D + IE RVLA ++ ++ A Sbjct: 619 RLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAA 678 Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 679 FLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGISRK 735 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T + + + E A + ++ Sbjct: 736 AAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE-------------------- 769 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +RR +P + + N + RS R+ + Sbjct: 770 -----------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERTAI 797 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634 NT +Q + DIL M+ K ++L VHDE+V Sbjct: 798 NTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVF 839 Query: 635 ETPDTDEFNASML-YHLMTSN 654 E P+ + + L +M Sbjct: 840 EVPEKELESLDKLVKEVMEQA 860 >gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596] gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596] Length = 875 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 92/622 (14%), Positives = 187/622 (30%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 +D + V +++ + L + ++LA PS A++ Sbjct: 363 SDASKVVYDAKKAMIAMHR---LGYAVSGITFDIMLASYLLNPSDSIDDFTSVAIRHDYT 419 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + + D E ++L + Sbjct: 420 EVETDEAVYGKGAKRSTPEESVVAPHLARKAVAIAILEKRLLDD----LEKNEQLALMED 475 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL + ++L Sbjct: 476 LELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLA-EEEFNINSPKQLG 534 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T T VL S ++ R Sbjct: 535 VILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 624 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKDAKDFIDRYFV 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794 Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M + + K ++L VHDE++ E P+ + Sbjct: 795 ----------IQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLE 844 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864 >gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10] gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10] Length = 881 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 92/633 (14%), Positives = 184/633 (29%), Gaps = 154/633 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L++ + +++ L ++LA L ++ Sbjct: 365 LKDEERKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYL-----LDTNDTNNDIAG 416 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV----------TRE 170 G + I + + P E F + V Sbjct: 417 VAAHYGYDAIQ--SDEAIYGKGAKKGLPADEED---FFAHLARKVAAITNLTPKLTEELA 471 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E L + + G VD + H + ++++++ + G Sbjct: 472 AKNQTALFEEMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEA-GET 530 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + GL + T+T VL K+ P + R A + Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQIAKIQS 590 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ + DG++ H Q +T Sbjct: 591 TY-VEGLLKVIQGDGKV-------------------------------HTRYVQTLTQTG 618 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R + E + +D + IE RVLA ++ + +A Sbjct: 619 RLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEA 678 Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F G+D++ +T R F + VT + R K + + Y + G+ Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 735 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T + + + E+ A + ++ Sbjct: 736 AAQQYIDT------YFEKYPGVKTYMEDVVREAKDKGYVE-------------------- 769 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +RR +P + + R+ R R+ + Sbjct: 770 -----------------TLYHRRRYLPDI--------------NSRNFNIRTF-AERTAI 797 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 NT +Q + DIL M++ K ++L VHDE+V Sbjct: 798 NTP------------------IQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDELVF 839 Query: 635 ETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 E P+++ L +M A +PL + Sbjct: 840 EVPESELPRLDALVKEVMEQAV--ALHVPLLTD 870 >gi|1097211|prf||2113329A DNA polymerase Length = 834 Score = 240 bits (612), Expect = 5e-61, Method: Composition-based stats. Identities = 83/452 (18%), Positives = 151/452 (33%), Gaps = 68/452 (15%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191 L D + R +G D + +RL E++L +L Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLS 440 Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + G DVA L+ + E +L++E+ L G + ++L+ LF E Sbjct: 441 RVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499 Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L T+ T +R VL + ++ P ++ +R Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359 ++ P PR R H +Q T +SDP+ I Sbjct: 541 ------------TKLKNTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588 Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +R +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V P V R K + + Y A +++ + + E + Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + R E E + ++ T R ++ ++RV + + G Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A K V L ++ ++L L Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%) Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604 K + + L GR Y + G R + R + RE VQ Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 + D++ M + G ++L VHDE++ E P + L M A Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816 Query: 660 GLPLKAE 666 +PL+ E Sbjct: 817 -VPLEVE 822 >gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] Length = 889 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 460 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 519 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 520 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 578 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 579 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 614 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 615 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 666 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 667 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 726 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 727 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 753 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 754 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 784 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 785 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 826 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 827 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 878 >gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 835 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 101/616 (16%), Positives = 173/616 (28%), Gaps = 140/616 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123 +D H + I + LA P + + Sbjct: 333 SDAPKYLHEAK---AAWHMLAGRGIELRGIAHDTALAAYLLRPG--------QRTYALTD 381 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + L + D N + E +EI E + E Sbjct: 382 VSQRHLQKSLGAATEQLSILDENP--LVDQAGAIMELAAELTAQLQEI-DSFELYTDLEL 438 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G VD + T + + ++ L + ++L+ L Sbjct: 439 PLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVL 498 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNS 300 F + T+T ++L F + + A R L L++ + Sbjct: 499 FDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTLEGLIKTIQP 558 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DGR+ H +Q +T +++P+ I Sbjct: 559 DGRI-------------------------------HTTFNQTVTSTGRLSSTEPNLQNIP 587 Query: 361 -----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +RS + EG L+ AD + IE RV+A ++ + ++A+ GEDL+ + Sbjct: 588 VRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNYVGS 647 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F+V +VT + R K M L Y A + G+ + Sbjct: 648 KVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQ---QLGIPAREAKEI--------- 695 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 R + L + Q ++ Sbjct: 696 -----------------------------------MESYFERFGGVKRYLDEVVVQARKD 720 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G RR LP LN+ R + RE Sbjct: 721 GYTSTVFGRRRY---------------LPE---------------LNSDNR-VARENAER 749 Query: 595 GKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCET-PDTDEFNASMLYH 649 L I Q + DI+ M+ KA ++L VHDE+V E P E +L Sbjct: 750 AALNAPI-QGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILER 808 Query: 650 LMTSNPSWAKGLPLKA 665 M +PL+ Sbjct: 809 EMDKAIE--LTVPLEV 822 >gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233] gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233] Length = 902 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 105/636 (16%), Positives = 184/636 (28%), Gaps = 158/636 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118 + T V H+ T + A P+ C LA LP + Sbjct: 381 FADPTPTKVGHDLK---TAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGDLVQRY 437 Query: 119 ------SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 G++L + + N+ E + + + + Sbjct: 438 LHRTLDPEHSTNAGQQL----------SLIPEENEGAQTEQDSRDMVRARAIIDLAEALE 487 Query: 173 KRLEPLSSK------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + L+ L K E + + + G VDV L E T + + Sbjct: 488 QHLDSLGQKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEI 547 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G + ++L+ LF E G+ T+T + L Q F + R Sbjct: 548 -GREVNLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHRD 606 Query: 287 AV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L +++ DGR+ T Q + Sbjct: 607 VTRLKVTVEGLRKSVGDDGRIHTT-------------------------------FQQTV 635 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQW 397 +++P+ I +R + L+ AD + IE R++A ++ ++ Sbjct: 636 AATGRLSSTEPNLQNIPIRTDEGRLIRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEG 695 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF +GEDL+ ++F + QVT + R K M L Y A + Sbjct: 696 LIEAFRSGEDLHTFVAMKAFGLPAEQVTPELRRRIKAMSYGLAYGLSAYGLSGQLKIS-- 753 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + K+ SR Sbjct: 754 ---------------------------------------------VDEAKEQMEAYFSRF 768 Query: 518 SELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + L + ++G I +RR VP Sbjct: 769 GGVRDYLRDTVARARKDGYTETIFGRRRYVPD---------------------------- 800 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 LN+ RQ R L I Q + D++ M+N + ++L VHD Sbjct: 801 ---LNSDNRQ-KRAMAERIALNAPI-QGSAADVIKVAMVNVQRRIRAEGLRSRMLLQVHD 855 Query: 631 EIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 E+VCE D +L M A +PL+ Sbjct: 856 ELVCEVVADELAVMTELLKQEMGGAYPLA--VPLEV 889 >gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 893 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 94/521 (18%), Positives = 160/521 (30%), Gaps = 133/521 (25%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + K + E L + + G V+ A + +++Q++ + Sbjct: 476 TSAALADAKLTKLYGEIELPLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYA 535 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNN 279 L G + ++L LF GL + +T T VL + P +V Sbjct: 536 LA-GTEFNISSPKQLGEVLFDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTY 594 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 RM S+ P R H Sbjct: 595 RM-------------------------------WSKIRSTYLEGIGALIRPDTGRVHTSF 623 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMA 393 +Q +T +SDP+ I VR+ EG L+ AD + IE R+LA M+ Sbjct: 624 NQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFEPGEGYDALLSADYSQIELRILAHMS 683 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G++ + AF G+D++ T + F V A+VT QR K + + Y + Sbjct: 684 GDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQ--- 740 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ A + E + + + R + A + F+ T Sbjct: 741 DLGIPRKEAAGYI------ERYFERYHGVRAFLDRVVADAHTNGFVTT------------ 782 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + R+R LP+ S + Sbjct: 783 ------------------------LYGRRRA-----------------LPAINSRNFMQR 801 Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVL 626 N R +NT +Q + D++ M+ A A I+L Sbjct: 802 SNAERMAMNTP------------------IQGTAADLIKIAMIRADAALRAAGVKSRILL 843 Query: 627 TVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 VHDE+V E + + + L M+ A +PL + Sbjct: 844 QVHDELVLEVVNDEIAQVTELLTAAMSGAAQLA--VPLAVD 882 >gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580] Length = 879 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 94/638 (14%), Positives = 199/638 (31%), Gaps = 142/638 (22%) Query: 53 MPQV-------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 +P+ KE E+ ++ L +++ ++LA Sbjct: 349 IPEETAVQSDCFKEWAEDESKKKWVFDAKRAAVAL-RWRGIEL--KGAEFDVLLAAYIIN 405 Query: 106 PS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 P + V K + E + + KG ++ +H + Sbjct: 406 PGHSYDDVASVAKEHQLHIVSADEAV--YGKGAKQAVPDEKELADHLARKAKAISLLREK 463 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + E ++LE + E L ++ + G VDV + + + + + ++++ Sbjct: 464 LLDELEENEQLELFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHE 523 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 + G + ++L LF + GL + T+T VL + + + R Sbjct: 524 -SAGETFNINSPKQLGVILFDKLGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQ 582 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ + D + H +Q Sbjct: 583 -IGKLQSTYVEGLLKVIKKD------------------------------SHKVHTRFNQ 611 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 +T ++DP+ I +R + S +G + AD + IE RVLA ++ + Sbjct: 612 ALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKD 671 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF D++ T F+V+ +VT R K + + Y + Sbjct: 672 KNLIEAFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQ---NL 728 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E + + + E + A + ++ T Sbjct: 729 GITRKEAAAFI------ERYFHSFQGVKEYMEETVQEAKQRGYVTTLLS----------- 771 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +RR +P + + + RS Sbjct: 772 --------------------------RRRYIPELTSRNF---------NLRSFA------ 790 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629 R+ +NT +Q + DI+ + M++ ++L VH Sbjct: 791 ERTAMNTP------------------IQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVH 832 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P+ + L +M +PLK + Sbjct: 833 DELIFEAPEDEIKVLEKLVPEVMEHALE--LDVPLKVD 868 >gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus] gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB] Length = 834 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 83/452 (18%), Positives = 151/452 (33%), Gaps = 68/452 (15%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQT------ 191 L D + R +G D + +RL E++L +L Sbjct: 381 LLDPSNTTPEGVARRYGGEWTEDAAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLS 440 Query: 192 -----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + G DVA L+ + E +L++E+ L G + ++L+ LF E Sbjct: 441 RVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLA-GHPFNLNSRDQLERVLFDE 499 Query: 247 TGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 L T+ T +R VL + ++ P ++ +R Sbjct: 500 LRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHREL------------------- 540 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359 ++ P PR R H +Q T +SDP+ I Sbjct: 541 ------------TKLKNTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPV 588 Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +R +A G LV D + IE RVLA ++G++ ++ F+ G+D++ T + Sbjct: 589 RTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWM 648 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V P V R K + + Y A +++ + + E + Sbjct: 649 FGVPPEAVDPLMRRAAKTVNFGVLYGMSA---HRLSQELAIPYEEAVAFI------ERYF 699 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 + R E E + ++ T R ++ ++RV + + G Sbjct: 700 QSFPKVRAWIEKTLEEGRKRGYVETLFGR-RRYVPDLNARVKSVREAAERMAFNMPVQGT 758 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 A K V L ++ ++L L Sbjct: 759 AADLMKLAMVKLFPRLREMGA-RMLLQVHDEL 789 Score = 57.8 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%) Query: 548 LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTR-QLTREYTYGGKLTENIVQA 604 K + + L GR Y + G R + R + RE VQ Sbjct: 699 FQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAF-NMPVQG 757 Query: 605 VSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 + D++ M + G ++L VHDE++ E P + L M A Sbjct: 758 TAADLMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA- 816 Query: 660 GLPLKAE 666 +PL+ E Sbjct: 817 -VPLEVE 822 >gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118] gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118] Length = 892 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 89/516 (17%), Positives = 174/516 (33%), Gaps = 130/516 (25%) Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E ++L+ + E+ L + + G VD T+ + ++L+QE+ + Sbjct: 479 ELEENQQLDLYTKIERPLSIILANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEA- 537 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L LF + L + T+T VL + ++P + R A Sbjct: 538 GEEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 597 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L++ ++ + ++H Q +T Sbjct: 598 IQSTY-IEGLLKVVSK------------------------------KDGKAHTRYTQTLT 626 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 + DP+ I +R + S G ++ +D + IE RVLA ++ ++ Sbjct: 627 STGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNM 686 Query: 399 LKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF+ G D++ +T R FNV P +VT + R K + + Y + G+ Sbjct: 687 QEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NIGI 743 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + T + D + + E E A E+ ++ T Sbjct: 744 SRKQAKQFIDT------YLDTFSGVKDYMEKIVEFAKENGYVETIFN------------- 784 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +RR +P + + + RS R Sbjct: 785 ------------------------RRRYLPDIKSRNF---------NLRSFA------ER 805 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 + +N+ +Q + DI+ M+N ++L VHDE Sbjct: 806 TAMNSP------------------IQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDE 847 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ E P + M+ +M S +PLK E Sbjct: 848 LIFEAPTEEIPLLEDMVPKVMDSAVK--LDVPLKVE 881 >gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] Length = 897 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 90/490 (18%), Positives = 153/490 (31%), Gaps = 122/490 (24%) Query: 173 KRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +RL PL E+ L + + G VD ++ L+ + + G Sbjct: 490 ERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHA-AAGHPF 548 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + +L LF+E L + +T +KL Q Sbjct: 549 NVASTRELAQVLFVELELPVVKRLKTGPSTDQDVLEKLAEQHALP--------------- 593 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 R L+ S+ P P R H Q + Sbjct: 594 -------------RLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSS 640 Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I +S +R +A G +L+ AD + IE R+LA + + L+AF E Sbjct: 641 SDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRE 700 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A +F V P QVT DQR I KV+ + Y A + L + ++ Sbjct: 701 DVHTRTAAETFGVPPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQ---RLDLPPSEAQGII 757 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 R + + + Sbjct: 758 DRYFT--------------------------------------------RYAGVRRYIEW 773 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A E+ G++ + + R +P + + P+ R+ R+ +NT Sbjct: 774 AVEEARAKGESRTLFGRARTMPEIGARN---------PALRNAA------ERTAINTP-- 816 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ + ++L VHDE+V E P+ Sbjct: 817 ----------------IQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPER 860 Query: 640 DEFNASMLYH 649 + L Sbjct: 861 ELAPVEALVR 870 >gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] Length = 871 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 80/540 (14%), Positives = 166/540 (30%), Gaps = 137/540 (25%) Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202 + + W + ++ ++L+ E L + + G ++ Sbjct: 436 DKADEWTKSCYEAYTAYAASEKLMEKLKEEQMDRLFLEIEMPLVFTLFDMEQAGVRIEAE 495 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259 + + + +L+ E+ + G + ++L LF + + T+T T Sbjct: 496 ELKKYGEQLGEQIVQLESEIYEMA-GENFNINSPKQLGVILFEKLQMPHAKKTKTGYSTA 554 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL P ++ R + + L + DG Sbjct: 555 ADVLEKLAPEFPIVDKILEYRQLTKLKSTYA-DGLANYIGPDG----------------- 596 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGK 374 R H +Q IT +++P+ I + +R + EG Sbjct: 597 --------------RIHGTFNQTITATGRISSTEPNLQNIPVRMELGRLIRKVFVPQEGY 642 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 + AD + IE R+LA +G+ ++A+ +D++ T ++ F +VT QR K Sbjct: 643 VFIDADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTDLQRRNAKA 702 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + + + + +++ Sbjct: 703 VNFGIVYGISSFGLSQ---DLSITRKEASQYIESYF------------------------ 735 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYMKK 553 + + + + L + E G A+ + +RR +P + K Sbjct: 736 -----------------ETYPGIKKF---LDDSVTHAKEEGYAVTLFGRRRPIPEL---K 772 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 N + R +N +Q + DI+ Sbjct: 773 SSNFMQRNF------------GERVAMNAP------------------IQGTAADIMKIA 802 Query: 614 MMNA------TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 M+ + ++L VHDE++ ET PD E +L M + S +PL A+ Sbjct: 803 MIGVNRELKEKRMKSRMILQVHDELLIETHPDEIETVKEILKRQMETAAS--LDVPLIAD 860 >gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713] Length = 892 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 89/516 (17%), Positives = 174/516 (33%), Gaps = 130/516 (25%) Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E ++L+ + E+ L + + G VD T+ + ++L+QE+ + Sbjct: 479 ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEA- 537 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L LF + L + T+T VL + ++P + R A Sbjct: 538 GEEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 597 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L++ ++ + ++H Q +T Sbjct: 598 IQSTY-IEGLLKVVSK------------------------------KDGKAHTRYTQTLT 626 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 + DP+ I +R + S G ++ +D + IE RVLA ++ ++ Sbjct: 627 STGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNM 686 Query: 399 LKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF+ G D++ +T R FNV P +VT + R K + + Y + G+ Sbjct: 687 QEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NIGI 743 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + T + D + + E E A E+ ++ T Sbjct: 744 SRKQAKQFIDT------YLDTFSGVKDYMEKIVEFAKENGYVETIFN------------- 784 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +RR +P + + + RS R Sbjct: 785 ------------------------RRRYLPDIKSRNF---------NLRSFA------ER 805 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 + +N+ +Q + DI+ M+N ++L VHDE Sbjct: 806 TAMNSP------------------IQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDE 847 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ E P + M+ +M S +PLK E Sbjct: 848 LIFEAPTKEIPLLEDMVPKVMDSAVK--LDVPLKVE 881 >gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133] Length = 876 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 872 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 95/503 (18%), Positives = 162/503 (32%), Gaps = 130/503 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + G VD+ + V E +L +++ G + R ++L Sbjct: 471 EMPLIPVLADMEAAGIAVDLDAFAAFLREVQGELDRLTRDVYKAAGG-EFNIRSSQQLAE 529 Query: 242 WLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF GL T+ +T Q VL P + R + + L L Sbjct: 530 LLFGTLGLPTGGKTKGGQTSTAQDVLEKLSGRHPVVDAILEFR-KLEKLRSTYLEPLPRL 588 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++ GR+ T +Q+ T +S+P+ Sbjct: 589 VDGAGRIHTT-------------------------------FNQLATATGRLSSSNPNLQ 617 Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I + +R+C A+ G +LV AD + +E RVLA M+ + L AF G D++ T Sbjct: 618 NIPVRGDLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRT 677 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + ++VA QV+ DQR K + L Y G QK+A + L + Sbjct: 678 ASLLYDVAQDQVSTDQRRNAKTINFGLIYGMGP---QKLAQELRIPLTEAKAFI------ 728 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 E + R + A E ++ Sbjct: 729 ERYFSKLQKLREFYDEAETTARELGYV--------------------------------- 755 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 +A +RR +P ++ NT + R Sbjct: 756 ----TTMAGRRRLLPEIHS----------------------------ENTQLKSQARR-- 781 Query: 593 YGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETP-DTDEFNAS 645 + ++Q + DI+ M+ ++L VHDE++ E P D Sbjct: 782 ---QAINTLIQGSAADIIKLAMLAAHADPELRALNARLILQVHDELLLEVPADNAPAAGE 838 Query: 646 MLYHLMT--SNPSWAKGLPLKAE 666 L +M+ A +PL + Sbjct: 839 RLAAIMSGVRPGGVALDVPLAVD 861 >gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 877 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 99/628 (15%), Positives = 193/628 (30%), Gaps = 146/628 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ R V+ + I + L+LA P+ + K+ Sbjct: 363 LADETKKKSMFDAK--RAVVALKW-KGIDVRGVAFDLLLAAYLLNPAQDAGDIAAVAKMK 419 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNH-----REAWRLFGEYCKGDVTVTREIFKR 174 + E + + KG ++ H W L + D E + Sbjct: 420 QYEAVRSDEAV--YGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF--MDDLRNNEQDQL 475 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L L EQ L + + G VD + + + ++Q + G + Sbjct: 476 LTKL---EQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIEQRIYEHA-GQEFNIN 531 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + T+T VL + + R + + Sbjct: 532 SPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQSTYI 590 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ + D + H +Q +T + Sbjct: 591 EGLLKVVRPD------------------------------TGKVHTMFNQTLTQTGRLSS 620 Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++P+ I +R + SE + AD + IE RVLA +A + ++AF+ Sbjct: 621 AEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRD 680 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T F+V+ +VT + R K + + Y +A + A Sbjct: 681 LDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEF 737 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + E + + R EN + A + ++ T Sbjct: 738 I------ERYFASFPGVRRYMENIVQEAKQKGYVTTLL---------------------- 769 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 +RR +P + R+ R R+ +NT Sbjct: 770 ---------------HRRRYLPDITS--------------RNFNVRSF-AERTAMNTP-- 797 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 798 ----------------IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKE 841 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ +M S +PLK + Sbjct: 842 EIERLCELVPEVMEQAVS---SVPLKVD 866 >gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781] gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763] gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719] gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299] gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115] gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300] gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224] gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937] gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117] gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819] gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796] gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781] gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763] gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719] gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299] gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115] gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300] gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224] gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937] gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117] gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981] gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819] gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796] gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03] gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21172] Length = 876 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501] gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501] Length = 881 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 92/621 (14%), Positives = 180/621 (28%), Gaps = 152/621 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + +++ L ++L L ++ + Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYL-----LDTNEKSTDIEG 416 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLS 179 G I + + P E LF + V + +L L+ Sbjct: 417 IAAHYGYNDIQ--SDETVYGKGAKKGLPEEEE---LFFAHLARKVAAINALTPKLSQELA 471 Query: 180 SK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K E L + + G VD + +++Q++ G Sbjct: 472 DKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-GEE 530 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + GL + T+T VL ++ P + R A + Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQS 590 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ + SDG++ H Q +T Sbjct: 591 TY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQTG 618 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R + E + +D + IE RVLA ++ ++ A Sbjct: 619 RLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAA 678 Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 679 FLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGISRK 735 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T + + + E A + ++ Sbjct: 736 AAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE-------------------- 769 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +RR +P + + N + RS R+ + Sbjct: 770 -----------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERTAI 797 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634 NT +Q + DIL M+ K ++L VHDE+V Sbjct: 798 NTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVF 839 Query: 635 ETPDTDEFNASML-YHLMTSN 654 E P+ + + L +M Sbjct: 840 EVPEKELESLDKLVKEVMEQA 860 >gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11] gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46] Length = 876 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102] gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102] Length = 876 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] Length = 855 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 89/500 (17%), Positives = 153/500 (30%), Gaps = 128/500 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + ++ G VD +L+ KL++E+ L G+ + ++L Sbjct: 458 ETPLIPVLYSMEKWGIKVDKEYLKSLSDEFCERIKKLEEEIYELA-GMKFNLNSPKQLSE 516 Query: 242 WLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF L +T VL + P I++ Sbjct: 517 VLFERLKLPSGKKGKTGYSTSSLVLQNLLNAHPIVIKIL--------------------- 555 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 Q+ + P + R H + + T +S+P+ Sbjct: 556 ----------QYRELYKLKSTYIDAIPNLINSQTGRVHTKFNPTGTATGRISSSEPNLQN 605 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R IA +G V D + IE R++A ++ E + AF+ GED++ T Sbjct: 606 IPIKSEEGRKIRRAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTA 665 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F V +V R+ K + + Y + + AS T Sbjct: 666 AEIFGVPEDEVDDLLRSRAKAVNFGIIYGISSFGLSETASITP----------------- 708 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 E+AE F +++P + ++ R+K Sbjct: 709 --EEAEKFIDSYFKHYPR-------VKLFIDKTIYEAREKL------------------- 740 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 K + RKR + + K N R +N Sbjct: 741 YVKTLFGRKRYIPEIRSINKQVRNAY----------------ERIAINAP---------- 774 Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646 +Q + DI+ M+ K I+L +HDE++ E P+ + EF M Sbjct: 775 --------IQGTAADIIKLAMIEIYKEIEEKNLKSRILLQIHDELILEVPEEEMEFTPLM 826 Query: 647 LYHLMTSNPSWAKGLPLKAE 666 M +PL E Sbjct: 827 AKEKMEKVVE--LSVPLVVE 844 >gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] Length = 887 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] Length = 876 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNSKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] Length = 939 Score = 240 bits (611), Expect = 7e-61, Method: Composition-based stats. Identities = 103/622 (16%), Positives = 183/622 (29%), Gaps = 144/622 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGE 114 L E L + V +H+ VL A + LA P + Sbjct: 416 LGEWLADPAVPKASHDVK---AVLHALRGRGWTLAGLTSDTALAAYLAKPGQRSFDLADL 472 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLY---DRNKPNHREAWRLFGEYCKGDVTV---T 168 AL+ +EL + L + H +A + Sbjct: 473 ALRYLR------RELAMEGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELADALGAE 526 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++ L EQ L ++ + G VD A +L + + Q+ ++ G Sbjct: 527 LAEKEQNGLLLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVI-G 585 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L+ LF E G+ T+T + L Q F + R A Sbjct: 586 KEINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHRDAT 645 Query: 289 ---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + ++ L++++ +DGR+ T Q I Sbjct: 646 RLKVTVDGLLKSIAADGRIHTT-------------------------------YSQTIAA 674 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ + +R+ + +G +L+ AD + IE R++A ++ + + Sbjct: 675 TGRLSSTEPNLQNVPIRTAAGRRIRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALI 734 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF + D + T ++ F V A V+ +QRA K M L Y A + Sbjct: 735 EAFRSQRDFHSETASKVFGVDAADVSPEQRAKIKAMNYGLAYGLSAFGLSGQLRIS---- 790 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 E + Sbjct: 791 -------------------------------------------TEEARGLMDDYFETFGG 807 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + L + ++G RR LP Sbjct: 808 VRDYLRSIVDVARKDGYTATMLGRRRY---------------LP---------------D 837 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633 L + RQ RE L I Q + DI+ M+ A ++L VHDE+V Sbjct: 838 LTSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLRVHAALQAEGLRSRMLLQVHDELV 895 Query: 634 CETPDTDEFNASMLYHL-MTSN 654 E D + L M + Sbjct: 896 LEVADGERDAVDALVRREMAAA 917 >gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] Length = 889 Score = 240 bits (611), Expect = 7e-61, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 460 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 519 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 520 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 578 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 579 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 614 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 615 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 666 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 667 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 726 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 727 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 753 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 754 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 784 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 785 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 826 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 827 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 878 >gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] Length = 908 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 103/690 (14%), Positives = 214/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A + Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELRIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + ++ S L R + N Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104] gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104] Length = 913 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 113/673 (16%), Positives = 195/673 (28%), Gaps = 145/673 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSY 74 L G A D A D D DP L L + H + Sbjct: 350 LAVAGTHL-AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK 408 Query: 75 FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + + LA P + L + + + Sbjct: 409 L---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLDDLALRYLRRELRAEN 460 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188 + L D +A + + + + + L LS E + + Sbjct: 461 PQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRV 520 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G VD+ L L Q + + E G + ++L+ LF E Sbjct: 521 LAGMEKAGIAVDLDLLSEL-QSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQ 579 Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLR 305 + T+T + + L + F + A R A + ++ L+ ++ SDGR+ Sbjct: 580 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRIH 639 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 T +Q I +++P+ I Sbjct: 640 TT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTEA 668 Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R + +G +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F V Sbjct: 669 GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGV 728 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT + R K M L Y A + + Sbjct: 729 PIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIS------------------------ 764 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 E K+ +R + + LH EQ ++G Sbjct: 765 -----------------------TEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTST 801 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 RR LP S + + RE L Sbjct: 802 VLGRRRY---------------LPELDS----------------SNRQVREAAERAALNA 830 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT 652 I Q + DI+ M+ KA I+L VHDE++ E + L M Sbjct: 831 PI-QGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMG 889 Query: 653 SNPSWAKGLPLKA 665 ++ +PL+ Sbjct: 890 G--AYPLDVPLEV 900 >gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] Length = 907 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 98/556 (17%), Positives = 185/556 (33%), Gaps = 89/556 (16%) Query: 9 ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVLKEALE 62 ET D G+ Y + ++ F+F F+D H D V V K+A+ Sbjct: 336 ETIVAFDTETTGLD-YI-NNKLVGFSFSFNDEEAYYVPFGHFYLGVADQVSKDVAKQAMR 393 Query: 63 NT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 + +V HN F+ + + +++LA SAL + KL Sbjct: 394 RIFNSKVVGHNIKFDLHFVTRFLEEKDLPV-YCDSMILAWLINPESALSLDKLSDKLLGH 452 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR------------ 169 +M K+ + KGE + Y D +TR Sbjct: 453 EMVHFKDTVK---KGENFSTV----------ELDDACVYAAEDAFITRKLYKLFLKKLEL 499 Query: 170 -EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + +E + E + + + G VD V L + + L G Sbjct: 500 QDATHLIEEAKTVEIPFMHTLLKMEEEGIEVDTGFLEKFLVEVKETLEYLTKSIYELA-G 558 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T ++VLSS K P ++ R + Sbjct: 559 SEFNINSTQQLGNILFEKLGLPVGKKTKTGYSTNEKVLSSLKDKHPIIPKLLEYR-EVHK 617 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ L++ N D R H Q T Sbjct: 618 LYSTYIDPLLKLANED-----------------------------EQHRIHTSFVQTGTA 648 Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 + +P+ I + +R +A EGKK + D + +E R+LA + + + Sbjct: 649 TGRLSSKNPNLQNIPTRTPLGAKIRRGFVAGEGKKFIGIDYSQMELRLLAHFSQDPVLVN 708 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +D+++ T F + +R I K + L Y G +K++ T G+ Sbjct: 709 AFMHDKDIHLQTAIVLFG---EEEAAHKRNIAKTVNFGLLYGMGP---KKLSDTLGITTK 762 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++ E++ ++ + + + E + E ++ T R + + + Sbjct: 763 EAKEII------EKYFESFHTVKAYFRSIVESSKEKGYVETLLGR--RRYFDYENATPMY 814 Query: 521 WNELHQAFEQTIENGK 536 + ++ G Sbjct: 815 RAAYERESVNSVFQGS 830 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 6/69 (8%) Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 R Y + Y + ++ Q D++ M K ++L +HD Sbjct: 802 RRYFDYENATPMYRAAYERESVNSVFQGSVSDVIKLSMNKIHTIINEEKLQAKMLLQIHD 861 Query: 631 EIVCETPDT 639 E++ E + Sbjct: 862 ELIFEVDEK 870 >gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] Length = 892 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 89/516 (17%), Positives = 174/516 (33%), Gaps = 130/516 (25%) Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 E ++L+ + E+ L + + G VD T+ + ++L+QE+ + Sbjct: 479 ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEA- 537 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L LF + L + T+T VL + ++P + R A Sbjct: 538 GEEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 597 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L++ ++ + ++H Q +T Sbjct: 598 IQSTY-IEGLLKVVSK------------------------------KDGKAHTRYTQTLT 626 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 + DP+ I +R + S G ++ +D + IE RVLA ++ ++ Sbjct: 627 STGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNM 686 Query: 399 LKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF+ G D++ +T R FNV P +VT + R K + + Y + G+ Sbjct: 687 QEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQ---NIGI 743 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + T + D + + E E A E+ ++ T Sbjct: 744 SRKQAKQFIDT------YLDTFSGVKDYMEKIVEFAKENGYVETIFN------------- 784 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +RR +P + + + RS R Sbjct: 785 ------------------------RRRYLPDIKSRNF---------NLRSFA------ER 805 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 + +N+ +Q + DI+ M+N ++L VHDE Sbjct: 806 TAMNSP------------------IQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDE 847 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ E P + M+ +M S +PLK E Sbjct: 848 LIFEAPTEEIPLLEDMVPKVMDSAVK--LDVPLKVE 881 >gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 919 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 113/673 (16%), Positives = 196/673 (29%), Gaps = 145/673 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSY 74 L G A D A D D DP L L + H + Sbjct: 356 LAVAGTHL-AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK 414 Query: 75 FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + + LA P + L + + + Sbjct: 415 L---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLDDLALRYLRRELRAEN 466 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188 + L D +A + + + + + L LS E + + Sbjct: 467 PQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRV 526 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + + G VD+ L L Q + + E G + ++L+ LF E Sbjct: 527 LAGMENAGIAVDLDLLSEL-QSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQ 585 Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLR 305 + T+T + + L + F + A R A + ++ L+ ++ SDGR+ Sbjct: 586 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRIH 645 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 T +Q I +++P+ I Sbjct: 646 TT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTEA 674 Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R + +G +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F V Sbjct: 675 GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGV 734 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT + R K M L Y A + + Sbjct: 735 PIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIS------------------------ 770 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 E K+ +R + + LH EQ ++G Sbjct: 771 -----------------------TEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTST 807 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 RR LP S + + RE L Sbjct: 808 VLGRRRY---------------LPELDS----------------SNRQVREAAERAALNA 836 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT 652 I Q + DI+ M+ KA I+L VHDE++ E + L M Sbjct: 837 PI-QGSAADIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALARDKMG 895 Query: 653 SNPSWAKGLPLKA 665 ++ +PL+ Sbjct: 896 G--AYPLDVPLEV 906 >gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 939 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 74/504 (14%), Positives = 144/504 (28%), Gaps = 131/504 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G V+ A+ + + + +L ++ L G + ++ Sbjct: 536 DVELPLAPILGAMEWTGIKVNPAVLQEMAGELGADIRRLQADIYDLA-GESFNINSTQQF 594 Query: 240 KTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + GL + T+T VL P +V Sbjct: 595 GKILFEKLGLPVIKRTKTGYSTDVEVLEELADRHPIVPKVLE------------------ 636 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + + P R H +Q +T +++P+ Sbjct: 637 -------------YRQLMKLKSTYVEGLLPLIDGEDGRIHTSFNQAVTATGRLSSTEPNL 683 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R A + L+ AD + IE R+LA ++G+ AF +D++ Sbjct: 684 QNIPVRLEQGRRIRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHT 743 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V VT + R K + + Y ++ G+ + Sbjct: 744 RTASEVFGVPMENVTSEMRRRAKAVNFGIVYGISDF---GLSRDLGVLRAEARQYIDGYF 800 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 R S + + + + Sbjct: 801 --------------------------------------------DRYSGVKGYIDEIIAE 816 Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 G + +RR +P +++K R R+ +NT Sbjct: 817 ARRQGYVTTLLGRRRRLPDLFVKNK---------------IRQNFGERAAMNTP------ 855 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+ ++L VHDE++ E P + Sbjct: 856 ------------IQGTAADIIKAAMVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSE 903 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 A+++ M +PL + Sbjct: 904 AAALIRETMEQTI--RLDVPLTVD 925 >gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987] gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A] gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85] gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210] gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148] Length = 904 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 86/516 (16%), Positives = 158/516 (30%), Gaps = 129/516 (25%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E + + + G VD+ + L + + + Sbjct: 489 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 548 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L+ LF E G+ T+T + + L + F + A R Sbjct: 549 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 607 Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L++A+ +DGR+ H +Q Sbjct: 608 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 636 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396 I +++P+ I +R + +G +L+ AD + IE R++A ++G++ Sbjct: 637 IAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 696 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF TGEDL+ +R+F V +VT + R K M L Y A + + Sbjct: 697 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIST 756 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 N +R Sbjct: 757 EEANE-----------------------------------------------QMDAYFAR 769 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + L E+ ++G RR LP S Sbjct: 770 FGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS--------- 805 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + + RE L I Q + DI+ M+ KA ++L VHD Sbjct: 806 -------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVHD 857 Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 E++ E + L M ++ +PL+ Sbjct: 858 ELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 891 >gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii] gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii] Length = 881 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 113/627 (18%), Positives = 197/627 (31%), Gaps = 126/627 (20%) Query: 54 PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAV 112 PQ L E L + + L ++ P + L N L+A+ Sbjct: 355 PQPLVECLRDGSKLKAVQDLKPLLLALHRQGIDMPGPYFDTMVADYLLNPNRRAHTLEAI 414 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A+ L S ++ G+ E R GE V + Sbjct: 415 --AMDLLSYQLGAGER--------EDTSKGPQSLFDVDEALVRRTGEAAAVTAKVAPMLR 464 Query: 173 KRLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 +RL+ E L + I G+ +DVA L++ ++ E ++ + L Sbjct: 465 ERLKEQGSLSLFQDVEMPLVPVLAEIERNGFLLDVAGLQALSKELEHELEQMVGSIYRL- 523 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G + ++L T LF GL T+T + +L Q Sbjct: 524 GGGEFNIGSPKQLATVLFETLGLKPLRKTKTGYSTDEDTLTQLASQHELPAQ-------- 575 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L + ++ P P R H L+Q + Sbjct: 576 --------------------ILNYRTLTKLKSTYVDALPQLVNPETKRLHTSLNQTVAAT 615 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++DP+ I +R IA G +L+ AD + +E R+LA ++ + L+ Sbjct: 616 GRLSSTDPNLQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQVEPRILAHLSQDPRLLQV 675 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE GED+++ T FN+ +VT+D R K + + Y +AS G+ Sbjct: 676 FEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVFGIVYGISPF---GLASNIGVPQAD 732 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 ++T + + R + + + + + T R Sbjct: 733 AKKYIET------FFEKFAAVRALMDRNIDDGKTKGYTTTILGR---------------- 770 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 RR +P + + PS R + R +N Sbjct: 771 ---------------------RRPIPEL----QGGD-----PSQRGV------GERMAVN 794 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641 + + G + I A+ I + ++L VHDE++ E P+ + Sbjct: 795 SPIQ---------GSAADLIKVAM---IKVHQRLQNELPRCKMILQVHDELIFEVPEQEL 842 Query: 642 FNASMLYHLMTSNPSWAKGL--PLKAE 666 A L A GL PLK + Sbjct: 843 EQAKQLVKAEMEATGAALGLSVPLKVD 869 >gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3] gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3] Length = 948 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 119/707 (16%), Positives = 217/707 (30%), Gaps = 186/707 (26%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70 D G+ A ++ + D+ + LKE +++ V VA Sbjct: 362 DTETDGLD--ALCAGIVGMSLCADEKQAYFIPLPESAEEATHILSPLKELMQDERVLKVA 419 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGK 127 HN+ F+ VL +P R + +LA +L + A L K Sbjct: 420 HNAKFDLEVLTRY---GLPEARPLYDTMLAHYLIDADQGHSLDEL--AGGLLRYDTIRYK 474 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------L 178 +L L P +L +Y D VT +++ L L Sbjct: 475 DLS-----PLEIFALRTDVDP------KLLCDYASEDAYVTLRLYQALHKQLSPTEQRLL 523 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLE 237 + E L Y+ + RG +D+ Q + +L++E++S + GL + Sbjct: 524 TEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPK 583 Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF E + T+T T + L + L P + Sbjct: 584 QIGELLFDELQIMEKPRKTKTGSYVTNEETLLPLRSLHPVVALIL--------------- 628 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + A + P P + H +Q +T +S Sbjct: 629 ----------------DYREARKLLNTYIDPLPKMCYP-DGKLHTSYNQAVTATGRLSSS 671 Query: 353 DPDPLQI-----ISDCVRSCVIASE--------------------GKKLVVADLAGIEAR 387 +P+ I + +R +A G L+ AD + +E R Sbjct: 672 NPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACAPVDHTHEKPIGAVLLSADYSQVELR 731 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 V+A ++ + + +F +G+D++ T A+ F VAP +VT R+ K + Sbjct: 732 VMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI-------- 783 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G+ + + +G A E +K Sbjct: 784 ------NYGITPYGLSQRLNIP-----------------------------VGEAAELIK 808 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + + + +++A E G A RR L + R+ Sbjct: 809 EYF-ATFTHIQAF---MNEAIALATERGYTETAFGRR---------------RQLRNLRT 849 Query: 568 LVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--- 623 GN R+ +N +Q + DI+ M+ + Sbjct: 850 ARGAQRGNAERNAINAP------------------IQGTAADIIKIAMIRVEEELTKQQL 891 Query: 624 ---IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAK-GLPLKAE 666 +VL VHDE+V + + L +W + +PL E Sbjct: 892 RSYLVLQVHDELVLNVYLDELERVTALVREAMEC-AWPECSVPLVVE 937 >gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948] gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765] gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus 132] gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754] gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus] gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948] gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20] gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765] gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754] gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus CGS01] gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131] gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 876 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNSKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4] gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4] Length = 1015 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 94/491 (19%), Positives = 159/491 (32%), Gaps = 128/491 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + + G VD V E ++ QE+ G + R ++L Sbjct: 614 ELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQ-FNIRSAQQLGE 672 Query: 242 WLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF GL T TT Q L P + + R + + L L + Sbjct: 673 LLFGTLGLPTVGKTRGGQATTSQDALEKLSGRHPVVDLILDFR-KLEKLRSTYLEPLPKL 731 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++ GR+ T +Q+ T +S+P+ Sbjct: 732 VDDAGRIHST-------------------------------FNQLATATGRLSSSNPNLQ 760 Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I + +RSC A+EG LV AD + IE RVLA M+ + L AF G D++ T Sbjct: 761 NIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRT 820 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 ++ AP VT DQR K + L Y G QK+ + +N Sbjct: 821 AGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGP---QKLGQELRITVNEA---------- 867 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 ++ + + + + ++ + A + Sbjct: 868 -------------------------------KQFIERYFSRLQHLRNFYDNVEAAARE-- 894 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + +A +RR +P ++ NT R R Sbjct: 895 QGHVTTLAGRRRLLPEMHS----------------------------ENTQLRSQARR-- 924 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPD-TDEFNAS 645 + ++Q + DI+ M+ A ++L VHDE++ E P+ + Sbjct: 925 ---QAINTLIQGSAADIIKLAMLAAHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGE 981 Query: 646 MLYHLMTSNPS 656 L LM+ Sbjct: 982 RLALLMSEVRP 992 >gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313] Length = 894 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 194/660 (29%), Gaps = 154/660 (23%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVE--LW--DCVH---DPVMPQVLKEALENTDVTI 68 + K G L A PVE W D + + + K+ LE+ ++ Sbjct: 332 IDKTG------SFSQKLAAIAI--SPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKK 383 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 H+ L N I + ++ PS K +L+ + + + Sbjct: 384 YGHDLKNFIVYLN---NRGIDFNGLAFDTMIGAYIINPS--KETYTISELAQEYLNLSVK 438 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------E 182 + L+ +P+ + V+R+I L+ + + E Sbjct: 439 AVEELAGKGKSFTLFKDMQPDVLSKTVGVYPHVIS--KVSRKIDSLLKENNQERLYYDIE 496 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + G+ V+V ++ + + + +E+ +L G + ++L Sbjct: 497 LPLVRTLADMEYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLA-GEEFNINSPKQLGVI 555 Query: 243 LFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + GL + T+T VL ++ R Sbjct: 556 LFEKLGLPIIKKTKTGYSTDAEVLEELSDRHEIVEKILEYRQL----------------- 598 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 + P + H +Q +T +++P+ I Sbjct: 599 --------------VKLKSTYAEGLLAVINPYTGKIHSSFNQTVTATGRISSTEPNLQNI 644 Query: 360 I-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R I E L+ AD + IE RVLA + ++ + AF ED++ +T Sbjct: 645 PIKLEMGRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTA 704 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F + +VT R+ K + + Y G + A ++ + + Sbjct: 705 ASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSL---AKDLKISRKEARAYID--GYLD 759 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + E E F+ T R R+ + Sbjct: 760 RYPNVKK----YMHDIVEEGKEKGFVTTMFMR-----RRYLPELKS-------------- 796 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 R+ R G R +NT Sbjct: 797 --------------------------------RNFNIRSFGE-RVAMNTP---------- 813 Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M+ K ++L VHDE++ ET ++ + Sbjct: 814 --------IQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKI 865 >gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005] Length = 876 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 95/627 (15%), Positives = 181/627 (28%), Gaps = 143/627 (22%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ LK +++ L+LA P+ V K+ Sbjct: 361 LADETKKKSMFDAKRAAVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 417 Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177 + + + + K R+ P+ + R L Sbjct: 418 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 468 Query: 178 -----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L EQ L + + G VD + + + ++Q + L G + Sbjct: 469 EQDGLLIKLEQPLATILAEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYELA-GQEFN 527 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + L + T+T +KL P V N Sbjct: 528 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEN-------------- 573 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L + + P + H +Q +T ++ Sbjct: 574 --------------ILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALTQTGRLSSA 619 Query: 353 DPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +P+ I +R + SE + AD + IE RVLA +A + ++AF Sbjct: 620 EPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDL 679 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T F+V+ +VT R K + + Y +A + A + Sbjct: 680 DIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEFI 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 E + + + E + A + ++ T R R+ ++ Sbjct: 737 ------ERYFASFPGVKRYMETIVQEAKQKGYVTTLLHR-----RRYLPDITS------- 778 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 R+ R R+ +NT Sbjct: 779 ---------------------------------------RNFNVRSF-AERTAMNTP--- 795 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640 +Q + DI+ + M++ + ++L VHDE++ E P + Sbjct: 796 ---------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEE 840 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAE 666 L +M A +PLK + Sbjct: 841 MERLCQLVPEVMEQAV--ALRVPLKVD 865 >gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378] Length = 552 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 92/622 (14%), Positives = 185/622 (29%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 +D T V +++ + + I ++LA PS A++ Sbjct: 40 SDETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHDYT 96 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 97 EVETDEAIYGKGAKRSTPEENIVAAHLARKAVAIAELEKRLVDD----LEKNEQLALMED 152 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 153 LELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 211 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + L T+T T VL S ++ R Sbjct: 212 VILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 256 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 257 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 300 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 301 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 360 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 361 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 417 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 418 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 454 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 455 ----------------------------------RNFNVRGF-AERTAMNTP-------- 471 Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M + + ++L VHDE++ E P+ + Sbjct: 472 ----------IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLE 521 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 522 EIVPDVMENAVE--LSVPLKVD 541 >gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262] gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262] Length = 875 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 92/622 (14%), Positives = 185/622 (29%), Gaps = 139/622 (22%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 +D T V +++ + + I ++LA PS A++ Sbjct: 363 SDETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHDYT 419 Query: 122 KMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++E + + + K E + + A + D E ++L + Sbjct: 420 EVETDEAIYGKGAKRSTPEENIVAAHLARKAVAIAELEKRLVDD----LEENEQLALMED 475 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L ++ + +G VD + + L++ + SL G + ++L Sbjct: 476 LELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLA-GEEFNINSPKQLG 534 Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + L T+T T VL S ++ R Sbjct: 535 VILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL--------------- 579 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 G+++ T T + + H +Q +T + DP+ Sbjct: 580 ----GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + S G K+ AD + +E RVLA ++ ++ + AF+ D++ Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+V +V R K + + Y + G+ + Sbjct: 684 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFIDRYFV 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + ++ A E ++ T R R+ + Sbjct: 741 SYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------------ 777 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 R+ R R+ +NT Sbjct: 778 ----------------------------------RNFNVRGF-AERTAMNTP-------- 794 Query: 592 TYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M + + ++L VHDE++ E P+ + Sbjct: 795 ----------IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLE 844 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 845 EIVPDVMENAVE--LSVPLKVD 864 >gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 876 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNSKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIFTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] Length = 876 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A F+ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V + Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKFAHK-------------------------------- 814 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +E TY KL +L VHDE++ E P ++ + Sbjct: 815 ----MKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] Length = 879 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 95/520 (18%), Positives = 160/520 (30%), Gaps = 126/520 (24%) Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +T + E + E L + + G VDV + T + + + Sbjct: 459 ELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 518 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + L + ++L+T LF L T+T ++L + F + Sbjct: 519 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 578 Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + A R L L++ + DGR+ H Sbjct: 579 HLLAHREYQKMKTTLEGLIKTVQPDGRI-------------------------------H 607 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390 +Q + +++P+ I +RS I +G +L+ AD + IE RV+A Sbjct: 608 TTFNQTVASTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMA 667 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++A++ GEDL+ +R F+V QVT + R K M L Y A + Sbjct: 668 HLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQ 727 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +G K Sbjct: 728 Q-----------------------------------------------LGIPAGEAKSIM 740 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + L + Q ++G RR LP Sbjct: 741 ESYFERFGGVKKYLDEVVVQARKDGYTATLFGRRRY---------------LPE------ 779 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVL 626 LN+ R L RE L I Q + DI+ M+ +A ++L Sbjct: 780 ---------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALQGMKSRVLL 828 Query: 627 TVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 VHDE+V E P + +L M S +PL+ Sbjct: 829 QVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEV 866 >gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039] gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039] Length = 881 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 93/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 + + +++ L ++L + G A Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177 ++ + + + K + P E LF + V + +L Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469 Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 L+ K E L + + G VD + +++Q++ G Sbjct: 470 LADKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T VL ++ P + R A Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + SDG++ H Q +T Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I +R + E + +D + IE RVLA ++ ++ Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676 Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + T + + + E A ++ T Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKNQGYVET----------------- 770 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + +RR +P + + N + RS R+ Sbjct: 771 --------------------LYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 +NT +Q + DIL M+ K ++L VHDE+ Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKEAGLQATMLLQVHDEL 837 Query: 633 VCETPDTDEFNASML-YHLMTSN 654 V E P+ + + L +M Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860 >gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] Length = 1020 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 109/623 (17%), Positives = 206/623 (33%), Gaps = 118/623 (18%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVG 113 LK LE+ + + N F +L I + +++ + +++ Sbjct: 494 LKPVLESAGILKIGFNIKFVAVLLAQH---GITLANVDDIQLMSYALDAGRGSQKFESLA 550 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E L+ + EG+ + + K + DR + EA + + V R + + Sbjct: 551 E-HVLAHAVLGEGELVGSGKNKLTFEQVAIDRATAHAAEAADVIHRLWR--VLKPRLVAE 607 Query: 174 RLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 R+ + E+ L + + RG +D + L+ +++ EL+ L G + Sbjct: 608 RMTAVYETLERPLVTVLAQMERRGIAIDRQVLSRLSGDFAQTAGRVEAELQELA-GEPIN 666 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +++ LF + GL T+T +S + Sbjct: 667 VGSPKQIGDILFGKMGLPGGTKTKTGAWSTSASILDDLAE-------------------- 706 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + R L++ S+ P P+ R H T ++ Sbjct: 707 ------QGNDFARKILEWRQVSKLKSTYTDALPTYVNPQSQRVHTTYALAATTTGRLSSN 760 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I +R IA+ G KLV AD + IE R+LA +A +AF+ G D Sbjct: 761 EPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLD 820 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T + F V + + R K + + Y A +A+ G+ + +K Sbjct: 821 IHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAF---GLANQLGIAREEASAYIK 877 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 +E +M E + + +KH V+ L+ Sbjct: 878 -----RYFERFPGIRAYMDET-------------------REFCRKHGYVTTLF------ 907 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 ++ P + S R+ R N R Sbjct: 908 -------------GRKCHYPEIKASNA---------SVRAFNERAAINARL--------- 936 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASM 646 G + I +A++R E + K ++L VHDE++ E PD + + Sbjct: 937 ------QGTAADIIRRAMTR---VEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPV 987 Query: 647 LYHLMTSNPSWA--KGLPLKAEG 667 + H+M P A +PL + Sbjct: 988 VQHVMQDAPFPAVLLSVPLHVDA 1010 >gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] Length = 876 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92] gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054] gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] Length = 904 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 87/516 (16%), Positives = 159/516 (30%), Gaps = 129/516 (25%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E + + + G VD+ + L + + + Sbjct: 489 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 548 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L+ LF E G+ T+T + + L + F + A R Sbjct: 549 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 607 Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L++A+ +DGR+ H +Q Sbjct: 608 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 636 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396 I +++P+ I S +R + +G +L+ AD + IE R++A ++G++ Sbjct: 637 IAATGRLSSTEPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 696 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF TGEDL+ +R+F V +VT + R K M L Y A + + Sbjct: 697 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIST 756 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 N +R Sbjct: 757 EEANE-----------------------------------------------QMDAYFAR 769 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + L E+ ++G RR LP S Sbjct: 770 FGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS--------- 805 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + + RE L I Q + DI+ M+ KA ++L VHD Sbjct: 806 -------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVHD 857 Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 E++ E + L M ++ +PL+ Sbjct: 858 ELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 891 >gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97] gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11] gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503] gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A] gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85] gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207] gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506] gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475] gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv] gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97] gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11] gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A] gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207] gi|740010|prf||2004291B DNA polymerase I Length = 904 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 86/516 (16%), Positives = 158/516 (30%), Gaps = 129/516 (25%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E + + + G VD+ + L + + + Sbjct: 489 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 548 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L+ LF E G+ T+T + + L + F + A R Sbjct: 549 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 607 Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L++A+ +DGR+ H +Q Sbjct: 608 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 636 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396 I +++P+ I +R + +G +L+ AD + IE R++A ++G++ Sbjct: 637 IAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 696 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF TGEDL+ +R+F V +VT + R K M L Y A + + Sbjct: 697 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIST 756 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 N +R Sbjct: 757 EEANE-----------------------------------------------QMDAYFAR 769 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + L E+ ++G RR LP S Sbjct: 770 FGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS--------- 805 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + + RE L I Q + DI+ M+ KA ++L VHD Sbjct: 806 -------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVHD 857 Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 E++ E + L M ++ +PL+ Sbjct: 858 ELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 891 >gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema pallidum] Length = 997 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 98/646 (15%), Positives = 188/646 (29%), Gaps = 155/646 (23%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D + + L+ + +T+V HN F+ V+ + T+V A Sbjct: 467 DPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDP 526 Query: 106 PSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 A + +E++A + + + Y D Sbjct: 527 DRGTYGMDVLAASFFQIRTITFEEVVA-------------KGQTFAHVPYECAVRYAAED 573 Query: 165 VTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 +T ++ L+ E L + + + G + + L + Sbjct: 574 ADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDL 633 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271 + + ++ SL G + ++L+T LF E L VL + P Sbjct: 634 IQQYEHDIFSLA-GHEFNIGSPKQLQTVLFQELHLPPGKKNTQGYSTDHSVLKKLARKHP 692 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A ++ R S+ +L + + GR+ Sbjct: 693 IAEKILLFR-DLSKLRSTYTESLAKLADQTGRV--------------------------- 724 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 H QI T + +P+ I +R A+ G +L+ AD IE Sbjct: 725 ----HTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIEL 780 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 LA ++ ++ L AF D++ T A FNV+ V R I K + + Y A Sbjct: 781 VALAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAF 840 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +++ ++ + Sbjct: 841 ---RLSDELKISQKEAQSFIY--------------------------------------- 858 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 + + + V ++ EQT + G +A +RR + + + Sbjct: 859 --RYFETYPGVYAFSTQV---AEQTRKTGYVTSLAGRRRYIRTIDSRNT----------- 902 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-- 623 R LNT +Q+ + DI+ M+ +A Sbjct: 903 ----LERARAERMALNTQ------------------IQSSAADIVKIAMIAIQRAFARRP 940 Query: 624 ----IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 ++L VHDE++ E P + + M +PL+ Sbjct: 941 LRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LSIPLR 984 >gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S] gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S] Length = 908 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 106/692 (15%), Positives = 219/692 (31%), Gaps = 164/692 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--MPQV 56 + ID ET S +D+ GI ++ + P+E ++ + Q Sbjct: 341 KYISIDTET-SSLDIYTARLIGISISFKEFE----GYYI---PIEARGKIYIEKHYIIQK 392 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 E ++ I+ N F+ +LK IP + T++ A S + A Sbjct: 393 FNNFFE-SNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAE 449 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 K K + +++I K + + + + Y D +T +F Sbjct: 450 KYLMHKNIKYEDVIQ---KNDNFAGI----------SLEMATSYSSEDADITFRLFNVFS 496 Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + E + + + G +D + + E ++ E+ + Sbjct: 497 KKLKEDSLDKLMHEIEMPFNNVIIEMEENGIYLDREYLKEYGKELGKELELIETEIIK-S 555 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G+ + +++ LF + L L + + T +VL S + + +R A Sbjct: 556 IGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLRGQHESIENLIKHRQIAK 615 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L+E +N + +R H Q T Sbjct: 616 LKSTYT-DNLIELINY------------------------------KTNRLHTNFIQTKT 644 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + +P+ I +R G + AD + IE +LA ++ ++ + Sbjct: 645 ATGRVTSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLI 704 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAFE +D++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 705 KAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT- 760 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 E+A+ F +++ ++ E Sbjct: 761 ---------------KEEAKGFIDSYFDSY-------------------------PKIKE 780 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + ++ S L R + Sbjct: 781 F------------------------IINQINFVRNTGY------SETILKRRRYIKEINS 810 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 N R + +I+Q + DI+ M+ K I+L VHDE++ Sbjct: 811 NNYLERSAAERIS-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEML 865 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 E+P +E + +M ++ PL+A Sbjct: 866 IESPIKEENEVKKILKIMMET-AYTLTPPLRA 896 >gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] Length = 903 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 86/516 (16%), Positives = 158/516 (30%), Gaps = 129/516 (25%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E + + + G VD+ + L + + + Sbjct: 488 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 547 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L+ LF E G+ T+T + + L + F + A R Sbjct: 548 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 606 Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L++A+ +DGR+ H +Q Sbjct: 607 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 635 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396 I +++P+ I +R + +G +L+ AD + IE R++A ++G++ Sbjct: 636 IAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 695 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF TGEDL+ +R+F V +VT + R K M L Y A + + Sbjct: 696 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIST 755 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 N +R Sbjct: 756 EEANE-----------------------------------------------QMDAYFAR 768 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + L E+ ++G RR LP S Sbjct: 769 FGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS--------- 804 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630 + + RE L I Q + DI+ M+ KA ++L VHD Sbjct: 805 -------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVHD 856 Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 E++ E + L M ++ +PL+ Sbjct: 857 ELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 890 >gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] Length = 887 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 149/624 (23%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 E + L+ P + G L+ + +++ + G+ Sbjct: 368 EESALQTWLESAAPKYLHSAKETFHMLRGRGITLRGIAHDTAIAAYLLRPGQRTYDL--- 424 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------E 182 G+ ++ R + L E V I + E L+ E Sbjct: 425 GDVYQRHLQRQLTTGSDQLSLLDEDTTL-VDSAAAILELAEKLTEDLRAINSYELYADLE 483 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + D G VD+ + + + + T + SL + ++L Sbjct: 484 LPLVTILAEMEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLSSPKQLSVV 543 Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMN 299 LF + L T+T + L + F +++ A R + L++ ++ Sbjct: 544 LFDKLELPKTKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKSTIEGLIKTVH 603 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 DGR+ T +Q + +++P+ I Sbjct: 604 DDGRIHTT-------------------------------FNQTVASTGRLSSTEPNLQNI 632 Query: 360 I-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +RS +G + L+ AD + IE RV+A ++ + ++A++ GEDL+ Sbjct: 633 PVRTEAGRRIRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDLHNFVG 692 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 +R F+V VT + R K M L Y A +++ G+ Sbjct: 693 SRVFDVPIDDVTPELRRRVKAMSYGLVYGLSAY---GLSNQLGIPAGEA----------- 738 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 KK R + L + EQ Sbjct: 739 ---------------------------------KKIMESYFQRFGGVKRYLDEVVEQARR 765 Query: 534 NG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 +G + + +RR +P + T+ ++ RE Sbjct: 766 DGYTSTVFGRRRYLPEL--------------------------------TSDNRVARENA 793 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYD----------IVLTVHDEIVCE-TPDTDE 641 L I Q + DI+ M+ A D ++L VHDE+V E P E Sbjct: 794 ERAALNAPI-QGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIAPGELE 852 Query: 642 FNASMLYHLMTSNPSWAKGLPLKA 665 +++ M + L + A Sbjct: 853 QVQAIVEEEMDRAITLRVPLEVSA 876 >gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544] gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544] Length = 878 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 89/513 (17%), Positives = 162/513 (31%), Gaps = 129/513 (25%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E + + + E L + + G V+ A + V ++Q + + Sbjct: 465 AKLEEEELTHLMKTVELPLVEVLAAMEQNGVYVNRAHLAEKTEEVADRLQTIEQSIYEMA 524 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L T LF E L + T+T VL S + P Q+ R+ Sbjct: 525 -GHTFNLNSPKQLGTVLFEELDLPVRKKTKTGYSTNAEVLESLRLEHPIVEQILAYRL-- 581 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S+ R H +Q + Sbjct: 582 -----------------------------WSKLKSTYLDGITGLIRTDTGRVHTSFNQTV 612 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQW 397 T +SDP+ I +R+ EG L+ AD + IE R+LA M+G++ Sbjct: 613 TATGRLSSSDPNLQNIPVRTEEGRMIRALFEPGEGYDYLLSADYSQIELRLLAHMSGDEN 672 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + F+ G+D++ T A F + +VT + R K + + Y +A + Sbjct: 673 FIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNFGIVYGISDF---GLARNLHI 729 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + + R + A E ++ T Sbjct: 730 SRKEAGDYI------SRYFERYPGVRAFMDKVVAEAHETGYVTT---------------- 767 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + +RR++P + K +N ML R Sbjct: 768 ---------------------MFGRRRELPAI---KSRNFNQRML------------AER 791 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDE 631 +NT +Q + D++ M+ +AG I+L VHDE Sbjct: 792 MAMNTP------------------IQGTAADVIKLAMIAAYHRLKEAGVKSRILLQVHDE 833 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPL 663 +V E +++ + ++L M A +PL Sbjct: 834 LVLEVVESELDVVQAILRESMEHVV--ALSVPL 864 >gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44] gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44] Length = 877 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 83/539 (15%), Positives = 158/539 (29%), Gaps = 135/539 (25%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 L RF D + +A E + + E L + Sbjct: 430 LTERFSVPSIANGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 485 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G +D E T++ +E+ L G + ++L LF + Sbjct: 486 LVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKLN 544 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + +P ++ R Sbjct: 545 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------------------- 579 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 ++ + R H +Q++T +SDP+ I Sbjct: 580 ------SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 633 Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R+ G LV AD + IE R+LA ++G++ +KAF G+D++ T A Sbjct: 634 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 693 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + +VT ++R+ K + + Y ++ G+ + + Sbjct: 694 SQDEVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 741 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 SR ++ + + ++ E GK Sbjct: 742 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 766 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+ LP S + R R+ +NT Sbjct: 767 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 796 Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHLM 651 +Q + DI+ M + ++L VHDE+V E +++ + L+ Sbjct: 797 ---IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSE---LEAIEELL 849 >gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15] gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15] Length = 881 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 92/621 (14%), Positives = 180/621 (28%), Gaps = 152/621 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + +++ L ++L L ++ + Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYL-----LDTNEKSTDIEG 416 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLS 179 G I + + P E LF + V + +L L+ Sbjct: 417 IAAHYGYNDIQ--SDETVYGKGAKKGLPEEEE---LFFAHLARKVAAINALTPKLSQELA 471 Query: 180 SK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 K E L + + G VD + +++Q++ G Sbjct: 472 DKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-GEE 530 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + GL + T+T VL ++ P + R A + Sbjct: 531 FNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQS 590 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ + SDG++ H Q +T Sbjct: 591 TY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQTG 618 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R + E + +D + IE RVLA ++ ++ A Sbjct: 619 RLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAA 678 Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 679 FLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGISRK 735 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T + + + E A + ++ Sbjct: 736 AAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE-------------------- 769 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +RR +P + + N + RS R+ + Sbjct: 770 -----------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERTAI 797 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634 NT +Q + DIL M+ K ++L VHDE+V Sbjct: 798 NTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVF 839 Query: 635 ETPDTDEFNASML-YHLMTSN 654 E P+ + + L +M Sbjct: 840 EVPEKELESLDKLVKKVMEQA 860 >gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 462 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 78/462 (16%), Positives = 139/462 (30%), Gaps = 68/462 (14%) Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQ 183 K + P + +Y D +T + L P E Sbjct: 4 KYVDLVGKGAKQIPFSHVGVQEATQYAAEDADITLRLHCVLAPKLLAEPILERVYREIEM 63 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + I G +D + + + Q+ L G + ++L+ L Sbjct: 64 PLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMDLA-GRHFNLDSPKQLQVLL 122 Query: 244 FLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 F E L + +T + L + Sbjct: 123 FDELKLPVVVKTPKGQPSTNEEALEAIVDQHALP-------------------------- 156 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 R L++ ++ P P R H Q +SDP+ I Sbjct: 157 -----RVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDPNLQNI 211 Query: 360 I-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R +A G+KL+ D + IE R++A ++G+ + AFE+G D++ A Sbjct: 212 PIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAA 271 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 F +VT ++R K + L Y A +A G++ + Sbjct: 272 EVFGRGIDEVTPNERRAAKAINFGLIYGMSAF---GLARQLGISRGEAQDYIA------L 322 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + D + R EN + A + ++ T R + S +A Sbjct: 323 YFDRFSGVRDFMENTRQQARDRGYVETVFGR-RLYLNSIASGNQTQRAGAERAAINAPMQ 381 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 G A KR V + L + R+L+ V + Sbjct: 382 GTAADIIKRAMVAV------DGWLGVGGHRERALMILQVHDE 417 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 18/172 (10%) Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN- 556 G + V R+ ++ AF + G I + +D +Y + Sbjct: 273 VFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLG--ISRGEAQDYIALYFDRFSGV 330 Query: 557 --NLILMLPSGRSLVYRD-VGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILA 611 + R Y + V R YLN+ Q R +Q + DI+ Sbjct: 331 RDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA-AINAPMQGTAADIIK 389 Query: 612 EGMMNAT--------KAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN 654 M+ + ++L VHDE+V E + + M + Sbjct: 390 RAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 441 >gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635] gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635] Length = 876 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397] gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397] Length = 877 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455] gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455] Length = 870 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 441 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 500 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 501 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 559 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 560 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 595 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 596 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 647 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 648 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 707 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 708 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 734 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 735 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 765 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 766 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 807 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 808 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 859 >gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] Length = 877 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 89/625 (14%), Positives = 195/625 (31%), Gaps = 141/625 (22%) Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALK 117 E+ +++ L+ + + L +A PS + ++ + Sbjct: 363 EDETKKKTVYDAKRSEVSLRHH---GVHLKGADFDLYIASYLINPSQTIEDMASIAKNHG 419 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 ++ + +E A + KG ++ H K + + ++ E Sbjct: 420 YNAIQSDE-----AFYGKGAKRRIPEEKELAGHLARKAAALMTLKEKLDSELKENQQSEL 474 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + + G VD+ T+ Q + + ++++ + L G + + Sbjct: 475 FYDLEMPLSLILADMESTGIKVDLERLKTMGQDLLSKLDEIEKRIHELA-GEAFNINSPK 533 Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF + GL T+T VL + + + R + + L Sbjct: 534 QLGVILFEKLGLPAIKKTKTGYSTSADVLEKLENSHEIIRDILHYRQL-GKLQSTYIEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ +N + + H +Q +T ++DP Sbjct: 593 LKVVNYE------------------------------TGKVHTRFNQALTQTGRLSSTDP 622 Query: 355 DPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R + SE G + AD + IE RVLA +A ++ ++AF D+ Sbjct: 623 NLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADYSQIELRVLAHIANDEKLIEAFIEDMDI 682 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T F+V +VT + R K + + Y + + G+ + Sbjct: 683 HTKTAMEVFHVNANEVTSNMRRHAKAVNFGIVYGISDYGLSQ---SLGITRKEAGKFID- 738 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + ++ + ++ A + ++ T R R+ ++ Sbjct: 739 -----RYLESYPGVKQYMDDIIHDAKQKGYVSTLLHR-----RRYLPEITS--------- 779 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 R+ R R+ +NT Sbjct: 780 -------------------------------------RNFNLRSF-AERTAMNTP----- 796 Query: 589 REYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEF 642 +Q + DI+ + M + + ++L VHDE++ E P+ + Sbjct: 797 -------------IQGSAADIIKKAMIDMADRLRKEELKARLLLQVHDELIFEVPEDEIE 843 Query: 643 NASMLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 844 TLKKIVPDVMENAVE--LKVPLKVD 866 >gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564] gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564] Length = 877 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 431 GVKKALPEREKFLEHLARKLAILVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + D+ KL QE+ L G + ++L LF + GL LE Sbjct: 491 GITVKKETLLEMQAENDLVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERSED 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 857 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 858 Q--LSVPLIAD 866 >gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH60] Length = 876 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELSLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A F+ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 95/630 (15%), Positives = 185/630 (29%), Gaps = 149/630 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ LK +++ L+LA P+ V K+ Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419 Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 + + + + K R+ P+ + R L Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470 Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L EQ L + + G VD + + + ++Q + L G + Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYELA-GQEFN 529 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T VL + + R + Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ ++ D + H +Q +T Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R + SE G + AD + IE RVLA +A + ++AF Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+V+ +VT R K + + Y +A + A Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + E + + + E + A + ++ T Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLL-------------------- 769 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +RR P + R+ R R+ +NT Sbjct: 770 -----------------HRRRYFPDITS--------------RNFNVRSF-AERTAMNTP 797 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + L +M +PLK + Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867 >gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] Length = 872 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 91/593 (15%), Positives = 171/593 (28%), Gaps = 141/593 (23%) Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 ++++ P L + Q + + L + E Sbjct: 386 AISKAAADPKELYKYMMGQGKNLQGITDDPALAGYLYEPGASGYGIQ---ALGEEFLPAA 442 Query: 158 GEYCKGDVTVTR-EIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 D + ++LE E L + G VD A+ + Sbjct: 443 SGEGAQDTAALVPVLREKLEERGLTRLYEDIELPLTENLAEMEFTGIAVDQAMLDEVTGE 502 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNK 267 + + L+Q+ G + ++L LF + GL + T+T VL + + Sbjct: 503 MTKKVQALEQQAWDQA-GEQFNLNSPKQLGVLLFEKLGLPIIKKTKTGYSTDVSVLEALQ 561 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P + + R S+ P Sbjct: 562 GEHPLIETLISYRQL-------------------------------SKLLSTYLLGLHPL 590 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADL 381 P R H +Q+ T +++P+ I +R + EG L+ D Sbjct: 591 INPATGRIHTHFNQMATVTGRLSSTEPNLQNIPTRTEVGKRMREMFVPGEGYDLLMSCDY 650 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + +E RV+A +A ++ L +F G+D++ T + F V QVT R+ K + + Y Sbjct: 651 SQVELRVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIY 710 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 +A G+ A Sbjct: 711 GISDF---GLARQLGVPRGEAA-------------------------------------- 729 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + +R + + + + ++ E G RR Sbjct: 730 ------QYIESYFARYTGVKAYMEREKQKAREMGYVETLFGRRRY--------------- 768 Query: 562 LPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 LP + + R R+ +NT +Q + DI+ M+ + Sbjct: 769 LPDINAKNFNRRSFAERTAINTP------------------IQGTAADIIKVAMLKVARN 810 Query: 621 G------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V E P ++ ++ M A +PL A+ Sbjct: 811 LKEARVKSRVLLQVHDELVLEIPAAEQETVGKIVKETMEHAVDLA--VPLVAD 861 >gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] Length = 887 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 123/665 (18%), Positives = 201/665 (30%), Gaps = 158/665 (23%) Query: 25 AEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 A D A + L D + D P+ L EA A + A Sbjct: 344 ASDGECAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWA---------IHA 387 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + LA P + L + K + G+ L Sbjct: 388 LRGRGWTLGGLTSDTALAAYLVRPGQ-----RSFNLDDLSLRYLKRELRAETSGQEQLSL 442 Query: 143 YDRNKPNHREAWRLFGEYC------KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 D + EA + E + LS E L I G Sbjct: 443 LDDTEQLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATG 502 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD A H L + + + + ++L+ LF E + T+ Sbjct: 503 IAVDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTK 561 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313 T + + L + F + A R A + ++ L++A+ DGR+ T Sbjct: 562 TGYTTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTT------ 615 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 +Q + ++DP+ I +R Sbjct: 616 -------------------------FNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGF 650 Query: 369 IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + +G L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + Sbjct: 651 VVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPE 710 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K M L Y A +AS ++ Sbjct: 711 LRRRVKAMSYGLAYGLSAY---GLASQLKISTEEA------------------------- 742 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ +R + + LH EQ ++G RR Sbjct: 743 -------------------KQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLYGRRRY- 782 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP LN+ RQ RE L I Q + Sbjct: 783 --------------LP---------------DLNSDNRQ-RREVAERAALNAPI-QGTAA 811 Query: 608 DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKG 660 DI+ M+N KA D ++L VHDE+V E ++ E +++ M + Sbjct: 812 DIIKVAMINVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LS 869 Query: 661 LPLKA 665 +PL Sbjct: 870 VPLDV 874 >gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON] gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON] Length = 850 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 104/649 (16%), Positives = 205/649 (31%), Gaps = 147/649 (22%) Query: 32 LFAFGFD-----DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 L + D + +++++ +P ++ L N V +++ R ++ Sbjct: 324 LCVYSNDVLSLSEDELKVYNISVKQSVPDIVAAVLSNPKVHKHVYDAK--RLIVSMN-KS 380 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 I + ++A P SQ + K L+ ++ D + Sbjct: 381 HINVKGIDFDAMIAAYLLDP-------------SQSNYDIKRLVKQY-------LEIDDD 420 Query: 147 KPNHRE-AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205 +H WRL E+ E L + + G+ VDV + Sbjct: 421 AASHAGYLWRLMNIMLPQ--IKENEMNALFY---DIEMPLTRVLADMEINGFTVDVQMLK 475 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265 L + L +E+ +L G + ++L LF + L + T+T + Sbjct: 476 ELADDFERMIDGLTKEIYALA-GEEFNINSPKQLGAILFEKLKLPVGKKTKTGYSTDIEV 534 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K +++ V K+ + + ++ Sbjct: 535 LK------------QLQLQHDIVPKI----------------IDYRQLTKLKSTYIDGLM 566 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASE-GKKLVVA 379 P + H + +Q +T +++P+ I + +R + S L+ A Sbjct: 567 NMADPITHKIHSKFNQTVTVTGRISSTEPNLQNIPVKTELGHQIRKAFVPSSSDYLLLDA 626 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + IE RVLA M+ +Q + AF G+D++ T + F + QVT R+ K + + Sbjct: 627 DYSQIELRVLAHMSQDQNMIDAFLKGQDIHARTASEVFGIPLEQVTPLMRSRAKAVNFGI 686 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y +A G++ + ++ A N R + + A + ++ Sbjct: 687 VYGISDF---GLARNIGISRSEAKQYIEQYFARY------NGVRRFMDETIQFAKKHGYV 737 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T +R ++ + S + + +A T G A K+ V + Sbjct: 738 TTMFKR-RRYLPELASSNRTVRSFGERAAMNTPIQGTAADIIKKAMVDI----------- 785 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 Y + N Y KL I+Q Sbjct: 786 ----------YNALKENE---------------YRSKL---ILQ---------------- 801 Query: 620 AGYDIVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE++ E + DE ++ M +PL A+ Sbjct: 802 --------VHDELIIEVHRDEVDEIR-DLVKDKMEGVVK--MDVPLVAD 839 >gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] Length = 908 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 103/690 (14%), Positives = 214/690 (31%), Gaps = 160/690 (23%) Query: 2 ATLFIDFETRSPIDLTKC---GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 + ID ET S +D GI ++ + + ++ + Sbjct: 341 KYISIDTET-SSLDTYTAKLIGISISFKEFE----GYYIPIEAKGKIYIEKNYIIQKF-- 393 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L ++ I+ N F+ +LK IP + T++ A S + A K Sbjct: 394 NNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKY 451 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 K + +++I +N + + Y D +T +F Sbjct: 452 LMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFNLFTKK 498 Query: 176 -------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + + E + + + G +D + + E ++ E+ + G Sbjct: 499 LKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEIIK-SIG 557 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + +++ LF + L L + + T +VL S ++ + R A Sbjct: 558 IDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKLK 617 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L+E +N + +R H Q T Sbjct: 618 STYT-DNLIELINY------------------------------KTNRLHTSFIQTKTAT 646 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R G + AD + IE +LA ++ ++ +KA Sbjct: 647 GRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEILIKA 706 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE +D++ T ++ F + ++T + R I K + + Y+ ++A + Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELRIT--- 760 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 E+A+ F +++ ++ E Sbjct: 761 -------------KEEAKGFINSYFDSY-------------------------PKIKEF- 781 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + ++ S L R + N Sbjct: 782 -----------------------IINQINFVRNAGY------SETILKRRRYIKEINSNN 812 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 R +I+Q + DI+ M+ K I+L VHDE++ E Sbjct: 813 YLERSAAERIA-----INSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867 Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +P +E + +M ++ LPL+A Sbjct: 868 SPIEEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] Length = 873 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 83/539 (15%), Positives = 158/539 (29%), Gaps = 135/539 (25%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 L RF D + +A E + + E L + Sbjct: 426 LTERFSVPSIANGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 481 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G +D E T++ +E+ L G + ++L LF + Sbjct: 482 LVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKLN 540 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + +P ++ R Sbjct: 541 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------------------- 575 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 ++ + R H +Q++T +SDP+ I Sbjct: 576 ------SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 629 Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R+ G LV AD + IE R+LA ++G++ +KAF G+D++ T A Sbjct: 630 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 689 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + +VT ++R+ K + + Y ++ G+ + + Sbjct: 690 SQDEVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 737 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 SR ++ + + ++ E GK Sbjct: 738 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 762 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+ LP S + R R+ +NT Sbjct: 763 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 792 Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHLM 651 +Q + DI+ M + ++L VHDE+V E +++ + L+ Sbjct: 793 ---IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSE---LEAIEELL 845 >gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200] Length = 877 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1] gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1] Length = 875 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 99/628 (15%), Positives = 202/628 (32%), Gaps = 137/628 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 K LE+ ++ R ++ +N I + L+LA P+ A+ Sbjct: 356 FKRWLEDEQCKKSVFDAK--RAIVALKWN-GIELKGVDFDLLLAAYLLNPTDANGDVAAV 412 Query: 117 KLSSQ--KMEEGKELIARFCKGE-THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + Q ++ +E+ + K + + +A E + + Sbjct: 413 AKTKQYTDVQSDEEVYGKGAKQAIPPTNVLAEHLVRKAKAIASLKETYIQ----ELKRNE 468 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E L E L ++ + G VDV + + + +++Q + L G + Sbjct: 469 QFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKEFTAQLEQIEQRIYELA-GTTFNI 527 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP--QAIQVFNNRMRASRSAVLKL 291 ++L T LF + L + T+T +KL P + I+ + + + + Sbjct: 528 NSPKQLGTILFEKLQLPIVKKTKTGYSTSADVLEKLAPYHEIIEQILHYRQLGKLQSTYV 587 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ + D + H Q +T + Sbjct: 588 EGLMKVVRKD------------------------------TGKVHTIFQQALTQTGRLSS 617 Query: 352 SDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++P+ I +R + S + + AD + IE RVLA +A ++ + AF Sbjct: 618 TEPNLQNIPIRIEEGRKIRQAFVPSSDDWVIFAADYSQIELRVLAHIANDENLIAAFHHD 677 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T F+V +VT R K + + Y + G+ A Sbjct: 678 LDIHTKTAMDIFHVKEDEVTAHMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAAEF 734 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + E + + + E + A + ++ T Sbjct: 735 I------ERYFRSYPGVKRYMEEVVQDAKQKGYVTTLL---------------------- 766 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 +RR +P + N + RS R+ +NT Sbjct: 767 ---------------HRRRYLPDIT----SGNFNV-----RSFA------ERTAMNTP-- 794 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 795 ----------------IQGSAADIIKKAMIDLANRLHEERLQTRLLLQVHDELILEAPKE 838 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ +M + S +PLK + Sbjct: 839 EIELLKKIVPDVMENAVS--LRVPLKVD 864 >gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2] gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2] Length = 881 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 96/635 (15%), Positives = 193/635 (30%), Gaps = 158/635 (24%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-- 103 D + LK A V +++ L + +LA Sbjct: 354 DLFENEYFIAWLKNASSQKKV----YDAKRTYVALNRYAAA---PQGIVFDTLLAAYLLD 406 Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----RL 156 + + V + + + +E + R P E + R Sbjct: 407 TNDSNNDIAGVAKHYGFYAIQSDE-----------AIYGKGVKRGLPADEEVFFAHLARK 455 Query: 157 FGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 V + +E+ ++ + E L + + G VD + H + Sbjct: 456 VAAINYLSVRLAKELAEKNQTALFTDMELPLSKILAEMEITGIRVDASRLHQMKGEFAER 515 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTP 271 +++Q++ G + ++L LF + GL + T+T VL K+ P Sbjct: 516 LHEIEQKIYQEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAP 574 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + R A + + L++ + DG++ Sbjct: 575 IVEDILIYRQIAKIQSTY-VEGLLKVIQGDGKV--------------------------- 606 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIE 385 H Q +T + DP+ I +R + + + +D + IE Sbjct: 607 ----HTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPRAKDWVIYSSDYSQIE 662 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGG 444 RVLA ++ ++ AF G+D++ +T R F ++ P +VT + R K + + Y Sbjct: 663 LRVLAHISNDEHLKAAFVEGQDIHSSTAMRVFGISTPEEVTPNMRRQAKAVNFGIVYGIS 722 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + G+ + T + + + E A + ++ T Sbjct: 723 DYGLSQ---NLGITRKAAQQYIDT------YFEKYPGVKTYMEEVVREAKDKGYVET--- 770 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + +RR +P + + Sbjct: 771 ----------------------------------LYHRRRYLPDI--------------N 782 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618 R+ R R+ +NT +Q + DIL M++ Sbjct: 783 SRNFNLRTF-AERTAINTP------------------IQGSAADILKIAMIDLDRRLKEE 823 Query: 619 KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 K ++L VHDE+V E P+ + E +++ +M Sbjct: 824 KLQATMLLQVHDELVFEVPEDELERLDALVKEVME 858 >gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92] gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92] Length = 879 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 103/688 (14%), Positives = 196/688 (28%), Gaps = 167/688 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEALE 62 + D ET D+ + ++ F+F F+D H + P+ + Sbjct: 319 IAFDTET---TDIDT-------QSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDFA 368 Query: 63 NTDVT------IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 V +V N ++ V+K L+ P ++ T+VLA A+ A Sbjct: 369 AWAVGQIYKGCVVGQNLKYDFKVVKRNLGLE-PPVKFKDTMVLAWLADPSQAVGMDALAK 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +L + + ++++ R + +Y D +T + +K Sbjct: 428 RLYNYDTIKFEDVVR-------------RGETFASVPLENAAKYAAEDAWITLKFYKSFL 474 Query: 177 PLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 L E + G ++ L D + L E+ LT Sbjct: 475 NLLDPALIELANAHEFPFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEIYELT- 533 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRAS 284 G + +++L LF L ++ T+T VL+ ++ R Sbjct: 534 GENFNINSVKQLGAVLFEHLKLPVKKKTKTGYSTDEAVLAELIDAHLVIAKLLEYRELYK 593 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + + N SR + Q T Sbjct: 594 LQST------------------------------YCEPLLNLANKDENSRIYTNFVQTGT 623 Query: 345 HLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + +P+ I + VR A EG V D + IE R+LA + ++ L Sbjct: 624 STGRLASKNPNLQNIPARGSLAKDVRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 KAFE ED++ T F A RA+ K + L Y G+ K+A ++ Sbjct: 684 KAFENDEDIHARTAISIFGSA----DGQNRAVAKSINFGLIYGMGSS---KLAGQVNISR 736 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ + + Sbjct: 737 AEAKEYIERYF-----------------------------------------KAFPTIKG 755 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + A + + + +L R + + ++ Sbjct: 756 FLEGIKTAAKN------------------------EGFVRTLLGRKRFFDFTNATPMQTA 791 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIVCET 636 + Y + I Q + DI+ M+ ++L +HDE++ E Sbjct: 792 M------------YEREAVNTIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDELIFEV 839 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLK 664 D + + +PLK Sbjct: 840 ADEHAAEFGEAAQKIMQEI-YKLNVPLK 866 >gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae TIGR4] gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] Length = 877 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 94/630 (14%), Positives = 185/630 (29%), Gaps = 149/630 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ LK +++ L+LA P+ V K+ Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419 Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 + + + + K R+ P+ + R L Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470 Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L EQ L + + G VD + + + ++Q + L G + Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYELA-GQEFN 529 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T VL + + R + Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ ++ D + H +Q +T Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R + SE G + AD + IE RVLA +A + ++AF Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+V+ +VT R K + + Y +A + A Sbjct: 679 RDLDIHAKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + E + + + E + A + ++ T R R+ ++ Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLLHR-----RRYLPDITS---- 780 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 R+ R R+ +NT Sbjct: 781 ------------------------------------------RNFNVRSF-AERTAMNTP 797 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + L +M +PLK + Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867 >gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 893 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 97/542 (17%), Positives = 165/542 (30%), Gaps = 137/542 (25%) Query: 148 PNHREAWRLFGEYCKGDV----TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 P H E + + + E + E L + + G V+ A Sbjct: 455 PLHNEQIAFYEVILAAQLYGPMSAALADANLTELYGTVELPLVPILAAMERTGVAVNRAA 514 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----T 258 + +++Q++ +L G + ++L LF GL + +T T Sbjct: 515 LGRALAAANARIAEIEQDIYALA-GTEFNISSPKQLGEVLFDRLGLTSPKMKKTKTGYST 573 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + P +V RM S+ Sbjct: 574 NAEVLEEMRAAHPVVDRVLTYRM-------------------------------WSKIRS 602 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373 P R H +Q +T +SDP+ I VR+ EG Sbjct: 603 TYLEGIGALIRPDTGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFEPGEG 662 Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ AD + IE R+LA M+G++ + AF G+D++ T + F V A+VT QR Sbjct: 663 YDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSA 722 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + G+ A + E + + + R + Sbjct: 723 KAVNFGIVYGLSDYGLSQ---DLGIPRKEAAGYI------ERYFERYHGVRAFLDRVVAD 773 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 A + F+ T + R+R Sbjct: 774 AHTNGFVTT------------------------------------LYGRRRA-------- 789 Query: 553 KDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 LP+ S + N R +NT +Q + D++ Sbjct: 790 ---------LPAINSRNFMQRSNAERMAMNTP------------------IQGTAADLIK 822 Query: 612 EGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLK 664 M+ A A I+L VHDE+V E + + + L M+ A +PL Sbjct: 823 IAMIRADAALRAAGVKSRILLQVHDELVLEVVNDEIAQVTELLTAAMSGAAQLA--VPLA 880 Query: 665 AE 666 + Sbjct: 881 VD 882 >gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] Length = 908 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 105/693 (15%), Positives = 214/693 (30%), Gaps = 166/693 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57 + ID ET S + Y +I + F + ++ Sbjct: 341 KYISIDTETSS--------LDTY--TAKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390 Query: 58 KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 ++ L ++ I+ N F+ +LK IP + T++ A S + A Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K K + +++I +N + + Y D +T +F Sbjct: 449 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLFNIF 495 Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + E + + + G +D + + E ++ E+ Sbjct: 496 TEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIENEIIK- 554 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G+ + +++ LF + L L + + T +VL S ++ + +R A Sbjct: 555 SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKHRRIA 614 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L+E +N + +R H Q Sbjct: 615 KLKSTYT-DNLIELINY------------------------------KTNRLHTSFIQTR 643 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T + +P+ I +R G + AD + IE +LA ++ ++ Sbjct: 644 TATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +KAFE +D++V T ++ F ++T + R I K + + Y+ ++A G+ Sbjct: 704 IKAFENNKDIHVETASKLFKTEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT 760 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 E+A+ F +++ ++ Sbjct: 761 ----------------KEEAKGFINSYFDSY-------------------------PKIK 779 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + K+ S L R + Sbjct: 780 EF------------------------IINQINFVKNTGY------SETILKRRRYIKEIN 809 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 N R + +Q + DI+ M+ K I+L VHDE+ Sbjct: 810 SNNYLERSAAERIA-----INSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEM 864 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + E+P +E + +M ++ LPL+A Sbjct: 865 LIESPIKEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr] gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr] Length = 908 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 104/693 (15%), Positives = 215/693 (31%), Gaps = 166/693 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57 + ID ET S + Y +I + F + ++ Sbjct: 341 KYISIDTETSS--------LDTY--TAKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390 Query: 58 KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 ++ L ++ I+ N F+ +LK IP + T++ A S + A Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K K + +++I +N + + Y D +T +F Sbjct: 449 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLFNIF 495 Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + E + + + G +D + + E ++ E+ Sbjct: 496 TEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIENEIIK- 554 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G+ + +++ LF + L L + + T +VL S ++ + +R A Sbjct: 555 SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKHRRIA 614 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L+E +N + +R H Q Sbjct: 615 KLKSTYT-DNLIELINY------------------------------KTNRLHTSFIQTR 643 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T + +P+ I +R G + AD + IE +LA ++ ++ Sbjct: 644 TATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +KAFE +D+++ T ++ F + ++T + R I K + + Y+ ++A G+ Sbjct: 704 IKAFENNKDIHIETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDF---RLAKELGIT 760 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 E+A+ F +++ ++ Sbjct: 761 ----------------KEEAKGFINSYFDSY-------------------------PKIK 779 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + K+ S L R + Sbjct: 780 EF------------------------IINQINFVKNTGY------SETILKRRRYIKEIN 809 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 N R + +Q + DI+ M+ K I+L VHDE+ Sbjct: 810 SNNYLERSAAERIA-----INSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEM 864 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + E+P +E + +M ++ LPL+A Sbjct: 865 LIESPIKEENEVKKILKIMMET-AYTLNLPLRA 896 >gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] Length = 881 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 118/660 (17%), Positives = 219/660 (33%), Gaps = 150/660 (22%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFER--TVLKACFNL 86 +I FA+G +L+ ++ + KE LE T + + F+R +L L Sbjct: 338 IIGFAWGTKG---QLYASTDTALLQTPIFKEFLEKTPLKVY----DFKRAKVLLSH---L 387 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 DI + + LA+ + L SQ E++ + KG Sbjct: 388 DITLQKPAFDSRLAKYLLSTVEDNEISTIASLYSQIALPLDEVV--YGKGAKKAIPEKTA 445 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 H + + + +L+ L EQ L + + G V+ Sbjct: 446 LLEHLARKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIAGIKVERQTLED 505 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR--- 261 + +V +L QE+ L G + ++L LF + GL LE T+T Sbjct: 506 MQVENEVVLERLTQEIYELA-GEEFNINSPKQLGVILFEKLGLPLEYTKKTKTGYSTAVD 564 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + P ++ R A + + L + + DG++ Sbjct: 565 VLERLAPIAPIVSKILEYRQIAKIQSTY-VIGLQDWILEDGKI----------------- 606 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKK 375 H Q +T + DP+ I +R + E Sbjct: 607 --------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEEENSV 652 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434 L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P VT + R K Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRRNAKA 712 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y +++ G++ ++T Sbjct: 713 VNFGVVYGISDF---GLSNNLGISRKEAKAYIETYF------------------------ 745 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKK 553 R + + + + + + G + ++RR++P + Sbjct: 746 --------------------ERYPGIKDYMERVVREARDKGYVETLFKRRREIPDI---- 781 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R+ R R+ +N+ +Q + DIL Sbjct: 782 ----------NSRNFNVRGF-AERTAINSP------------------IQGSAADILKIA 812 Query: 614 MMNATKAGYD------IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 M++ +A ++L VHDEIV + P + L M S A +PL+A+ Sbjct: 813 MIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESAIELA--VPLEAD 870 >gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8] Length = 876 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 95/627 (15%), Positives = 181/627 (28%), Gaps = 143/627 (22%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ LK +++ L+LA P+ V K+ Sbjct: 361 LADETKKKSMFDAKRAAVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 417 Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177 + + + + K R+ P+ + R L Sbjct: 418 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPSLDELRSN 468 Query: 178 -----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L EQ L + + G VD + + + ++Q + L G + Sbjct: 469 EQDGLLIKLEQPLATILAEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYELA-GQEFN 527 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + L + T+T +KL P V N Sbjct: 528 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEN-------------- 573 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L + + P + H +Q +T ++ Sbjct: 574 --------------ILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALTQTGRLSSA 619 Query: 353 DPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 +P+ I +R + SE + AD + IE RVLA +A + ++AF Sbjct: 620 EPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDL 679 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T F+V+ +VT R K + + Y +A + A + Sbjct: 680 DIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGVVYGISDY---GLAQNLNITRKEAAEFI 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 E + + + E + A + ++ T R R+ ++ Sbjct: 737 ------ERYFASFPGVKRYMETIVQEAKQKGYVTTLLHR-----RRYLPDITS------- 778 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 R+ R R+ +NT Sbjct: 779 ---------------------------------------RNFNVRSF-AERTAMNTP--- 795 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640 +Q + DI+ + M++ + ++L VHDE++ E P + Sbjct: 796 ---------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEE 840 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAE 666 L +M A +PLK + Sbjct: 841 MERLCQLVPEVMEQAV--ALRVPLKVD 865 >gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] Length = 875 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 101/668 (15%), Positives = 201/668 (30%), Gaps = 161/668 (24%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 L D + +L+ LE++ +S + LK I Sbjct: 328 TCALLGMALSDGTKTQYIPFEIAAKSDILRRWLEDSSKIKYMSDSKASKAALKRA---GI 384 Query: 89 PIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + LVLA P + + L + +E +Y Sbjct: 385 QLAGVDFDLVLASYINNPGLSGDDVATLARELGYYDVQADE---------------TVYG 429 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIND 194 + ++ + +LE L + E L + + Sbjct: 430 KGAKRAVPEIDKLAQHVSRKAYAVWSLQPKLEALLKENEQFDLYKELELPLAAILGEMES 489 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G V+ A + Q ++ + L+QE+ + G + ++L LF + GL + Sbjct: 490 EGITVNRATLEKMGQELNDKLVVLEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKK 548 Query: 255 TET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+T T VL K + R + + L++ ++ Sbjct: 549 TKTGYSTAADVLEKLKSEHAIIEYILLYRQL-GKLQSTYIEGLLKEIHE----------- 596 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366 + S+ H Q +T ++DP+ I +R Sbjct: 597 -------------------KDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQ 637 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + S E L AD + IE RVLA M+ ++ ++AF G D++ T F+V+ +V Sbjct: 638 AFVPSKEDWILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVD 697 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K + + Y + + A + E++ + + Sbjct: 698 SNMRRAAKAVNFGIVYGISDYGLSQ---NLDITRKEAATFI------EKYFASFPGVKQY 748 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 ++ ++A + ++ T +RR Sbjct: 749 MDDIVQNAKFNGYVTTILN-------------------------------------RRRY 771 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 +P + + RS R+ +NT +Q Sbjct: 772 LPDITSSNF---------NLRSFA------ERTAMNTP------------------IQGS 798 Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ + M++ ++L VHDE++ E P + + +M + Sbjct: 799 AADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIAMLEKIVPEVMENAIE-- 856 Query: 659 KGLPLKAE 666 +PLK + Sbjct: 857 LSVPLKVD 864 >gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4] gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4] Length = 915 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 122/665 (18%), Positives = 200/665 (30%), Gaps = 158/665 (23%) Query: 25 AEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 A D A + L D + D P+ L EA A + A Sbjct: 372 ASDGECAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWA---------IHA 415 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + LA P + L + K + G+ L Sbjct: 416 LRGRGWTLGGLTSDTALAAYLVRPGQ-----RSFNLDDLSLRYLKRELRAETSGQEQLSL 470 Query: 143 YDRNKPNHREAWRLFGEYC------KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 D + EA + E + LS E L I G Sbjct: 471 LDDTEQLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATG 530 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD A H L + + + + ++L+ LF E + T+ Sbjct: 531 IAVDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTK 589 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313 T + + L + F + A R A + ++ L++A+ DGR+ T Sbjct: 590 TGYTTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVTVDGLLKAVAEDGRIHTT------ 643 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 +Q + ++DP+ I +R Sbjct: 644 -------------------------FNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGF 678 Query: 369 IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + +G L+ AD + IE R++A ++G++ ++AF TGEDL+ +R+F V +VT + Sbjct: 679 VVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPE 738 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K M L Y A +AS ++ Sbjct: 739 LRRRVKAMSYGLAYGLSAY---GLASQLKISTEEA------------------------- 770 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ +R + + LH EQ ++G RR Sbjct: 771 -------------------KQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLYGRRRY- 810 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP LN+ RQ RE L I Q + Sbjct: 811 --------------LP---------------DLNSDNRQ-RREVAERAALNAPI-QGTAA 839 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKG 660 DI+ M+N KA ++L VHDE+V E ++ E +++ M + Sbjct: 840 DIIKVAMINVQKALAEAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LS 897 Query: 661 LPLKA 665 +PL Sbjct: 898 VPLDV 902 >gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54] gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54] Length = 877 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14] gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14] gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375] Length = 877 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] Length = 884 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 113/655 (17%), Positives = 203/655 (30%), Gaps = 141/655 (21%) Query: 32 LFAFGFDDHPVELWDCVHDPVM--PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 L F W +DP + Q + + L + + ++ L I Sbjct: 340 LVGFAIGQG--NKWYVTNDPELLHNQHVSDLLTSKTIKKNLFDAKRTYVGLYRQ---GIE 394 Query: 90 IHRWICTLVLARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGE--THECLY 143 + ++L + + V + K +E E+ + K + Sbjct: 395 LANVDFDMLLVSYLLNTTNNSNDVGTVAHLHGFYNVKTDE--EVYGKGAKRHIDPQSPAF 452 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 + + +A + D+ +L E ++ ++ + G VD A Sbjct: 453 LAHLVHKVKAIDALHDGMFKDLDA--HNQSKL--YWDIEIKIAFVLAHMEINGIKVDAAT 508 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263 + +++Q + G + ++L LF + L + T+T + Sbjct: 509 LEGMGSKFKERLAEIEQTIFQEA-GEEFNIGSPKQLGKILFEKLRLPILKKTKTGYSTSV 567 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 +KL P A V + L + S+ Sbjct: 568 DVLEKLAPDAPIV----------------------------QNVLDYRQISKLQSTYVDG 599 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLV 377 P S+ H Q +T + DP+ I +R I S G ++ Sbjct: 600 LLKVIHPDDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGRLIRQAFIPSHPGWQIF 659 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436 +D + IE RVLA + +Q AF+ GED++ TT R F + +VT + R K + Sbjct: 660 SSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQAKAVN 719 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y +AS TG+ + E + + + E+ E A Sbjct: 720 FGIVYGISDF---GLASNTGITRKQAHQFI------ERYFEEYPGVKKYTEDIVEFARNH 770 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T IA +RR +P + K Sbjct: 771 RYVET-------------------------------------IAHRRRYLPDINSKSF-- 791 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + RS R+ +NT +Q + DI+ M+N Sbjct: 792 -------NLRSFA------ERTAMNTP------------------IQGSAADIIKIAMIN 820 Query: 617 ATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 A ++L VHDE++ E PD + L +M S +PLK E Sbjct: 821 MADAIKDMKTRMLLQVHDELIFEVPDEELDTVKQLIPSVMDSAIH--LNVPLKVE 873 >gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] Length = 884 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 156/555 (28%), Gaps = 144/555 (25%) Query: 129 LIARFCKGETHECLY-----------DRNKPNHREAWRLFGEYCKGD--VTVTREIFKRL 175 L+A Y E + D + Sbjct: 420 LMAYLLDPTRTNYGYLYLTERFSVPSIATGSVDVECVSMVKALLAMDDAAVKALQDESLW 479 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + ++ E L + + G +D E + QE+ L G + Sbjct: 480 DLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELEAVQQEIYELA-GETFNINS 538 Query: 236 LEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + L + T+T VL + +P ++ R Sbjct: 539 PKQLGIILFEKMNLPVIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------ 586 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 ++ P R H +Q++T +S Sbjct: 587 -------------------SVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSS 627 Query: 353 DPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 DP+ I +R+ EG LV AD + IE R+LA ++G++ +KAF G+ Sbjct: 628 DPNLQNIPVRTEKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGK 687 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A + +VT ++R+ K + + Y ++ G+ + + Sbjct: 688 DIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDF---GLSRDLGITRQEAKNYI 744 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + SR ++ + Sbjct: 745 ELYF--------------------------------------------SRYPKVKEYMDN 760 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTR 585 + E GK R + LP S + R R+ +NT Sbjct: 761 MVIEAHETGKVRTMFGR---------------MRELPDINSRNFNRRSFAERTAMNTP-- 803 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDT 639 +Q + DI+ M ++L VHDE+V E Sbjct: 804 ----------------IQGTAADIIKLAMNKVESILEEKAFKSRLLLQVHDELVLEV-VN 846 Query: 640 DEFNASM--LYHLMT 652 +E +A L M Sbjct: 847 EELDAIQTLLKETME 861 >gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus] Length = 878 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 95/630 (15%), Positives = 185/630 (29%), Gaps = 149/630 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ LK +++ L+LA P+ V K+ Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419 Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 + + + + K R+ P+ + R L Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470 Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L EQ L + + G VD + + + ++Q + L G + Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELA-GQEFN 529 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T VL + + R + Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ ++ D + H +Q +T Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R + SE G + AD + IE RVLA +A + ++AF Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+V+ +VT R K + + Y +A + A Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + E + + + E + A + ++ T Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLL-------------------- 769 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +RR P + R+ R R+ +NT Sbjct: 770 -----------------HRRRYFPDITS--------------RNFNVRSF-AERTAMNTP 797 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + L +M +PLK + Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867 >gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] Length = 880 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 118/630 (18%), Positives = 221/630 (35%), Gaps = 133/630 (21%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHR 92 A D P + D D K+ E+ + + + + +L +L++P Sbjct: 339 AIKTKDSPAYILDP--DQAFIDSFKDVFEDEKILKNSFDIKEDIVLLNKLGIDLNLPFDD 396 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + L + LK + +A L + + E +L+ + K ++ L N+ Sbjct: 397 LMLMHYLIDPSRSSYDLKTLSQAY-LDYEVISEV-DLLGKGKKSLSYGELDYDKLSNYLA 454 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 + E K + +K + E +L + + G+ D + L + ++ Sbjct: 455 SELNAIEDAKAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGFVTDRKVLLDLKEDIN 514 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL 269 + KL E+ L G + ++L LF + L + T+T T VL + Sbjct: 515 KDLEKLTSEIYELA-GSEFNINSTKQLGEVLFKDLDLPVIKKTKTGFSTDASVLEKLRDK 573 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 ++ R + + L +A++ DGR+R T + QN+ Sbjct: 574 HQIIPKIEKYR-ELFKLQSTYIEGLEKAIDDDGRIRSTFR-----------------QNI 615 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384 + DP+ + +R A +GK L+ AD + I Sbjct: 616 --------------AATGRLSSQDPNLQNLPIKTDEGRLIRKAFKAGQGKILIDADYSQI 661 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+LA ++G++ ++AF GED++ T ++ F+ +VTK QR+ K + + Y Sbjct: 662 ELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKRQRSDAKAVNFGIIYG-- 719 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 S GL+ N ++A+ + ++P Sbjct: 720 -------ISDYGLSQN----------LNIPRKEAKAYIDNYMASYP-------------- 748 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLP 563 + + E+ E+G + +RR VP + Sbjct: 749 --------------SIKAYMDSIVEKAKEDGFVETLFNRRRYVPEI-------------- 780 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATK 619 + ++ R G R LNT +Q + DI+ M+ N K Sbjct: 781 NSKNFNVRSFGQ-RVALNTP------------------IQGTAADIIKIAMIETDKNLKK 821 Query: 620 AG--YDIVLTVHDEIVCETPDTDEFNASML 647 AG IVL +HDEI+ E D+ +A + Sbjct: 822 AGLDAKIVLQIHDEIILEASLEDKDSAMEI 851 >gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17] gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46] gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] Length = 904 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 91/517 (17%), Positives = 162/517 (31%), Gaps = 131/517 (25%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELES 224 L E + + + G VD+ + L +Q D R D Sbjct: 489 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAADAAYGV 548 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + G + ++L+ LF E G+ T+T + + L + F + A Sbjct: 549 I--GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAH 606 Query: 285 RSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R + ++ L++A+ +DGR+ H +Q Sbjct: 607 RDVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQ 635 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGE 395 I +++P+ I S +R + +G +L+ AD + IE R++A ++G+ Sbjct: 636 TIAATGRLSSTEPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGD 695 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF TGEDL+ +R+F V +VT + R K M L Y A + + Sbjct: 696 EGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIS 755 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 N + Sbjct: 756 TEEANE-----------------------------------------------QMDAYFA 768 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + + L E+ ++G RR LP S Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRY---------------LPELDS-------- 805 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629 + + RE L I Q + DI+ M+ KA ++L VH Sbjct: 806 --------SNRQVREAAERAALNAPI-QGSAADIIKVAMIQVDKALNEAQLASRMLLQVH 856 Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 DE++ E + L M ++ +PL+ Sbjct: 857 DELLFEIAPGERERVEALVRDKMGG--AYPLDVPLEV 891 >gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus] gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 95/630 (15%), Positives = 185/630 (29%), Gaps = 149/630 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ LK +++ L+LA P+ V K+ Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419 Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 + + + + K R+ P+ + R L Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470 Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L EQ L + + G VD + + + ++Q + L G + Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELA-GQEFN 529 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T VL + + R + Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ ++ D + H +Q +T Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R + SE G + AD + IE RVLA +A + ++AF Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+V+ +VT R K + + Y +A + A Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + E + + + E + A + ++ T Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLL-------------------- 769 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +RR P + R+ R R+ +NT Sbjct: 770 -----------------HRRRYFPDITS--------------RNFNVRSF-AERTAMNTP 797 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + L +M +PLK + Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867 >gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] Length = 876 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 190/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEVDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A F+ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGFVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] Length = 895 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 101/616 (16%), Positives = 190/616 (30%), Gaps = 138/616 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKA 111 L+ +EN + N + + K L + + +LA + L Sbjct: 374 ELRSVIENAAIIKNVFNVKAQFVLFKR---LGMTLRGVEFDFLLAAYLLDTTDNDNELST 430 Query: 112 VGEALKLS--SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + + GK ET L + + + + Sbjct: 431 LAQRFDFYVTPDEDIYGKG-AKYAVPEETSRVLV--HLAHKADVLMQLEQPA----FAAL 483 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + ++ + E L ++ + RG +D + ++ + + + + G Sbjct: 484 QDHEQTHLYTEIELPLAHVLADMEYRGIKIDQTRLREIGTDLEERIDTIKEAIF-IEAGE 542 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 V + ++L LF + GL + T+T + +KL PQA V Sbjct: 543 VFNINSPKQLGILLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQAPIVD------------ 590 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 LQ+ ++ + S+ H Q +T Sbjct: 591 ----------------HILQYRQLAKLKSTYVDGLLSVVHEKDSKIHTRFLQTLTQTGRL 634 Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R+ + S ++ AD + IE RVLA M G++ +AF Sbjct: 635 SSIDPNLQNIPMRTEAGRKIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFL 694 Query: 404 TGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 GED++ T F + V R K + + Y +A+ G++ Sbjct: 695 NGEDIHAETARAVFGLDDNVPVDPLMRRTAKAVNFGIVYGISDF---GLANNLGISRAEA 751 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++T +++ WM + A E FI T Sbjct: 752 KRFIET-----YFQEFPKIHEWMTQ-IKAKAHEQGFIET--------------------- 784 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 IA++RR +P + K + RS R+ +N+ Sbjct: 785 ----------------IAKRRRYLPEIGSKNF---------NLRSFA------ERTAMNS 813 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET 636 +Q + DI+ M+ A ++L VHDE++ E Sbjct: 814 P------------------IQGSAADIIKIAMIKVADALQENGMQARMLLQVHDELIFEA 855 Query: 637 PDTDEFNASMLY-HLM 651 P + S L +M Sbjct: 856 PSDEIAELSELVTRVM 871 >gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] Length = 948 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 108/692 (15%), Positives = 205/692 (29%), Gaps = 174/692 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------- 54 ID ET + ++ ++ +F H H M Sbjct: 358 KHFVIDTET-TDVNWQ---------HAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLT 407 Query: 55 -----QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARS--NGLP 106 LK L+N + + + ++ +L NL W +LA N + Sbjct: 408 REDVLAQLKPILQNPQIGKIGQHLKYDAHILANYHINLINEPSNWAMDTMLASYVINAVA 467 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 + A + +++ + K T + + + +Y D Sbjct: 468 TRHGMDDLARHYLHTQTITFEDVAGKGAKQITFDKV----------PLTVASDYACEDAD 517 Query: 167 VTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVER 215 +T ++F+ E L + G ++ A L+ D E+ Sbjct: 518 ITYQLFELFSEKLKAEPNNAKLLHELEIPVAQILCQMEHDGILLNKAFLGELSARFD-EK 576 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271 + + + G + ++L LF G+ T+T T + VL++ P Sbjct: 577 IQALETVAFAQAGETFNLASPKQLGEVLFDRLGITGGKKTKTGQYSTSEAVLATID--HP 634 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 V +R S+ + L +S+ R+ Sbjct: 635 LIETVLEHR-SLSKLKSTYTDALANVADSNDRV--------------------------- 666 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 H Q +T +++P+ I +R IA +G+K++ AD + IE Sbjct: 667 ----HTSYHQALTTTGRLSSTEPNLQNIPIRTDTGRLIRGAFIAPKGRKVLSADYSQIEL 722 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R++A A + ++AF+ G D++ T A A VT ++R K + L Y Sbjct: 723 RLMAHFANDPVLIRAFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVNFGLLYGMSEF 782 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +A G + A+++ + +P Sbjct: 783 ---GLAKQLGFTR----------------QQAQDYIKLYFARYPT--------------- 808 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + A+ + + + GR Sbjct: 809 ----------------------VRAYMQATRTAAQNQGYITTIL--------------GR 832 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----Y 622 L D+ + N RQ L Q + DI+ M+ + Sbjct: 833 KLFTPDMQHP----NRGVRQAAERAAINAPL-----QGSAADIIKLAMIAVNEVLPTEHA 883 Query: 623 DIVLTVHDEIVCETP-DTDEFNASMLYHLMTS 653 ++L VHDE+V E D E A ++ + M Sbjct: 884 KMLLQVHDELVFEADEDKAEAIAELIKNAMQE 915 >gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] Length = 876 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AKRTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB] Length = 878 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 95/630 (15%), Positives = 185/630 (29%), Gaps = 149/630 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ LK +++ L+LA P+ V K+ Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419 Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 + + + + K R+ P+ + R L Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470 Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L EQ L + + G VD + + + ++Q + L G + Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELA-GQEFN 529 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T VL + + R + Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ ++ D + H +Q +T Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R + SE G + AD + IE RVLA +A + ++AF Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+V+ +VT R K + + Y +A + A Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + E + + + E + A + ++ T Sbjct: 736 EFI------ERYFASFPGVKRYMETIVQEAKQKGYVTTLL-------------------- 769 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +RR P + R+ R R+ +NT Sbjct: 770 -----------------HRRRYFPDITS--------------RNFNVRSF-AERTAMNTP 797 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + L +M +PLK + Sbjct: 840 KEEMERLCQLVPEVMEQAVE--LRVPLKVD 867 >gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1] Length = 959 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A + Y D +T +F Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDVASHYACEDADITFRLFN 535 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906 >gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] Length = 961 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 85/490 (17%), Positives = 159/490 (32%), Gaps = 127/490 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + +RG ++ H ++ +DV ++E+ + G + ++L Sbjct: 563 EIEMPLVSTLYEMEERGIKLNKEELHEYSEELDVLIKNYEEEIYKMA-GEEFNINSPKQL 621 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L T+T VL + P +V N R A + + L Sbjct: 622 GVILFEKLRLPYGKKTKTGYSTSADVLERIRLEDPIVERVLNYRQVAKLKSTYT-DGLEG 680 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DGR+ H +L+Q++T +++P+ Sbjct: 681 YVKEDGRI-------------------------------HCKLNQLVTATGRLSSTEPNL 709 Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I + +R + EG V AD + IE R++A ++G++ +KA++ ED++ Sbjct: 710 QNIPIRMELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHRI 769 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F V +VT QR K + + Y + + G++ Sbjct: 770 TASHVFGVPLDEVTDLQRRNAKAVNFGIIYGISSF---GLGENLGISRK----------- 815 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 DAE + + +P ++ L E Sbjct: 816 -----DAEKYINDYFKAYP----------------------------QVKKYLDSLVETG 842 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 IE G + + + + R G R +N+ Sbjct: 843 IEKG-------------FVKTYFGRIRPIPELNSNNFMKRQFGE-RIAMNSP-------- 880 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNA 644 VQ + DI+ M + ++L +HDE++ E + D E A Sbjct: 881 ----------VQGTAADIIKIAMNSVNARLKSEFPDSRLLLQIHDELLIEAKEEDKEAVA 930 Query: 645 SMLYHLMTSN 654 +L M Sbjct: 931 KLLKEEMMKA 940 >gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597] gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597] Length = 877 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 431 GVKKALPEREKFLEHLARKLSVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + ++ KL QE+ L G + ++L LF + GL LE Sbjct: 491 GITVKKETLLEMQTENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 798 QGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 857 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 858 Q--LSVPLIAD 866 >gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16] gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus] gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16] Length = 876 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 97/628 (15%), Positives = 193/628 (30%), Gaps = 145/628 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ R V+ + I + L+LA P+ + K+ Sbjct: 361 LADETKKKSMFDAK--RAVVALKW-KGIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMK 417 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNH-----REAWRLFGEYCKGDVTVTREIFKR 174 + E + + KG ++ H W L + D E + Sbjct: 418 QYEAVRSDEAV--YGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF--MDDLRNNEQDQL 473 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L L EQ L + + G VD + + + ++Q + L G + Sbjct: 474 LTKL---EQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIEQRIYELA-GQEFNIN 529 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + T+T VL + + R + + Sbjct: 530 SPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQSTYI 588 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ + D + H +Q +T + Sbjct: 589 EGLLKVVRPD------------------------------TGKVHTMFNQALTQTGRLSS 618 Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++P+ I +R + SE + AD + IE RVLA +A + ++AF+ Sbjct: 619 AEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRD 678 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T F+V+ +VT + R K + + Y +A + A Sbjct: 679 LDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEF 735 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + E + + + EN + A + ++ T R R+ ++ Sbjct: 736 I------ERYFASFPGVKQYMENIVQEAKQKGYVTTLLHR-----RRYLPDITS------ 778 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 R+ R R+ +NT Sbjct: 779 ----------------------------------------RNFNVRSF-AERTAMNTP-- 795 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 796 ----------------IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKE 839 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ +M + +PLK + Sbjct: 840 EIERLCELVPEVMEQAVT--LRVPLKVD 865 >gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] Length = 884 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 156/555 (28%), Gaps = 144/555 (25%) Query: 129 LIARFCKGETHECLY-----------DRNKPNHREAWRLFGEYCKGD--VTVTREIFKRL 175 L+A Y E + D + Sbjct: 420 LMAYLLDPTRTNYGYLYLTERFSVPSIATGSVDVECVSMVKALLAMDDAAVKALQDESLW 479 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + ++ E L + + G +D E + QE+ L G + Sbjct: 480 DLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELEAVQQEIYELA-GETFNINS 538 Query: 236 LEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + L + T+T VL + +P ++ R Sbjct: 539 PKQLGIILFEKMNLPVIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------ 586 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 ++ P R H +Q++T +S Sbjct: 587 -------------------SVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSS 627 Query: 353 DPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 DP+ I +R+ EG LV AD + IE R+LA ++G++ +KAF G+ Sbjct: 628 DPNLQNIPVRTEKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGK 687 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A + +VT ++R+ K + + Y ++ G+ + + Sbjct: 688 DIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDF---GLSRDLGITRQEAKNYI 744 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + SR ++ + Sbjct: 745 ELYF--------------------------------------------SRYPKVKEYMDN 760 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTR 585 + E GK R + LP S + R R+ +NT Sbjct: 761 MVTEAHETGKVRTMFGR---------------MRELPDINSRNFNRRSFAERTAMNTP-- 803 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDT 639 +Q + DI+ M ++L VHDE+V E Sbjct: 804 ----------------IQGTAADIIKLAMNKVESILEEKTFKSRLLLQVHDELVLEV-VN 846 Query: 640 DEFNASM--LYHLMT 652 +E +A L M Sbjct: 847 EELDAIQTLLKETME 861 >gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c] gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c] Length = 252 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 106/258 (41%), Positives = 135/258 (52%), Gaps = 13/258 (5%) Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 +TK+QR IGKV ELALGY GG AF A+ ++L A + P ++A Sbjct: 1 MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAA--QAVFPPLLLQEATELLE 58 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 W + NH AC+ K+AWR H ++ W L A I + + Sbjct: 59 WTKANHRPTFDLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPET-----T 113 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKL 597 + ++ + L L LPSGR L Y D SY+ T TR+ TR TYGGKL Sbjct: 114 HTCCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKL 173 Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657 ENI QAVSRD+LA M AGY IVLTVHDEI+ E D FNA+ L LM + P W Sbjct: 174 VENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPW 233 Query: 658 AKGLPLKAEGYESKRYRK 675 A+GLPL AEG+++ RYRK Sbjct: 234 AEGLPLAAEGFDTYRYRK 251 >gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] Length = 863 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 97/600 (16%), Positives = 172/600 (28%), Gaps = 137/600 (22%) Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122 N+D H + I + +A P +LS Sbjct: 360 NSDAPKYFHEAK---AAFHMLAGRGIELRGIAHDTAIAAYLLRPGQ-----RTYELSDVY 411 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182 K+ + G+ + L + + + E +T + E + E Sbjct: 412 QRHLKKTL-----GQASDQLSLLDDTSLVDQAAAIMELAAE-LTKQLQAIDSFELYTDLE 465 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + G VDV + T + + ++ L + ++L+ Sbjct: 466 LPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQERAARELAGDDSLNLNSPKQLQAV 525 Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMN 299 LF + T+T ++L F + + A R L L++ + Sbjct: 526 LFETFEMPKTKKTKTGYSTAAKEIEQLAVNHPHPFLDHLLAHREYQKMKTTLEGLIKTVQ 585 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 DGR+ H +Q + +++P+ I Sbjct: 586 PDGRI-------------------------------HTTFNQTVASTGRLSSTEPNLQNI 614 Query: 360 I-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +RS I EG + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 615 PVRTEAGRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLHNYVG 674 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 ++ F+V +VT + R K M L Y A + G+ + Sbjct: 675 SKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQ---QLGIPAREAKEI-------- 723 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 R + L E+ + Sbjct: 724 ------------------------------------MENYFERFGGVKRYLDNVVEKARK 747 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +G RR LP LN+ R L RE Sbjct: 748 DGYTATVFGRRRY---------------LPE---------------LNSDNR-LARENAE 776 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTDEFNASMLYH 649 L I Q + DI+ M+ A ++L VHDE+V E + + Sbjct: 777 RAALNAPI-QGTAADIIKVAMIRVDNALRDLKSRVLLQVHDELVVEVAPGEADEVKKILE 835 >gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] Length = 878 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 97/628 (15%), Positives = 193/628 (30%), Gaps = 145/628 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ R V+ + I + L+LA P+ + K+ Sbjct: 363 LADETKKKSMFDAK--RAVVALKW-KGIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMK 419 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNH-----REAWRLFGEYCKGDVTVTREIFKR 174 + E + + KG ++ H W L + D E + Sbjct: 420 QYEAVRSDEAV--YGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF--MDDLRNNEQDQL 475 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L L EQ L + + G VD + + + ++Q + L G + Sbjct: 476 LTKL---EQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIEQRIYELA-GQEFNIN 531 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + L + T+T VL + + R + + Sbjct: 532 SPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQSTYI 590 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++ + D + H +Q +T + Sbjct: 591 EGLLKVVRPD------------------------------TGKVHTMFNQALTQTGRLSS 620 Query: 352 SDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++P+ I +R + SE + AD + IE RVLA +A + ++AF+ Sbjct: 621 AEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRD 680 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T F+V+ +VT + R K + + Y +A + A Sbjct: 681 LDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEF 737 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + E + + + EN + A + ++ T R R+ ++ Sbjct: 738 I------ERYFASFPGVKQYMENIVQEAKQKGYVTTLLHR-----RRYLPDITS------ 780 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 R+ R R+ +NT Sbjct: 781 ----------------------------------------RNFNVRSF-AERTAMNTP-- 797 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 798 ----------------IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKE 841 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E ++ +M + +PLK + Sbjct: 842 EIERLCELVPEVMEQAVT--LRVPLKVD 867 >gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031] gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031] Length = 877 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] Length = 878 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 93/632 (14%), Positives = 166/632 (26%), Gaps = 164/632 (25%) Query: 57 LKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-----K 110 ++ + V HN+ F R + D + ++A P A Sbjct: 365 VRRLFADAAVAKHMHNAKDFLR------WAPDFDLANICFDSMVAAYLVNPLAANQQLED 418 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 V + L L T R P R Sbjct: 419 VVHQYLNLVLVPDGP--------AAPATAADCIRRLYPVLR---------------AELR 455 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++ E L + + G VD L++ +L + +L G Sbjct: 456 GYELDYLFDRVELPLTRVLADMELAGVAVDRDQLEALSEEFGTRAGELAARICTLA-GED 514 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + +L LF + GL T+T VL + A + R Sbjct: 515 FNLNSPRQLGYILFEKLGLPAGKKTKTGYSTDAGVLLDLAEKHEIAALLLEYRQLI---- 570 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + P R H L Q +T+ Sbjct: 571 ---------------------------KLKTTYADGLAALVDPATGRLHTTLHQTVTNTG 603 Query: 348 TSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R I + L+ AD + IE R+LA ++G+ + A Sbjct: 604 RLSSAEPNLQNIPIRMEEGRRIRKVFIPRDPARVLLTADYSQIELRILAHLSGDPALITA 663 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +D++ T A F V VT + R+ K + + Y +A + Sbjct: 664 FRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNFGIIYGISDF---GLARDLKVTRAE 720 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 ++ + +R+ + Sbjct: 721 AREYIQ--------------------------------------------RYFARLPGVK 736 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + A E G A RR LP N Sbjct: 737 EYIDTAIRSARERGYVTTALNRR---------------RPLP------------ELFSAN 769 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635 T R +Q + DI+ M+ + ++L VHDE++ + Sbjct: 770 HTVRSFGERAA-----VNTPIQGTAADIIKLAMVKIHARMRERNLKTLMILQVHDELLFD 824 Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666 P + + ++ M + +PL + Sbjct: 825 VPAEEVCTVAPLVKAEMETVLP--LNVPLTVD 854 >gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] Length = 881 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 + + +++ L ++L + G A Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177 ++ + + + K + P E LF + V + +L Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469 Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 L+ K E L + + G VD + +++Q++ G Sbjct: 470 LAEKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T VL ++ P + R A Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + SDG++ H Q +T Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I +R + E + +D + IE RVLA ++ ++ Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676 Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + T + + + E A + ++ Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 769 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + +RR +P + + N + RS R+ Sbjct: 770 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 +NT +Q + DIL M+ K ++L VHDE+ Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 837 Query: 633 VCETPDTDEFNASML-YHLMTSN 654 V E P+ + + L +M Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860 >gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68] gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162] gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68] gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162] gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] Length = 881 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 + + +++ L ++L + G A Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177 ++ + + + K + P E LF + V + +L Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469 Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 L+ K E L + + G VD + +++Q++ G Sbjct: 470 LAEKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T VL ++ P + R A Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + SDG++ H Q +T Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I +R + E + +D + IE RVLA ++ ++ Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676 Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + T + + + E A + ++ Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 769 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + +RR +P + + N + RS R+ Sbjct: 770 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 +NT +Q + DIL M+ K ++L VHDE+ Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 837 Query: 633 VCETPDTDEFNASML-YHLMTSN 654 V E P+ + + L +M Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860 >gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141] Length = 877 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 98/512 (19%), Positives = 166/512 (32%), Gaps = 135/512 (26%) Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 LE L EQ L ++ + G V + ++ KL QE+ L G + Sbjct: 470 LELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNVN 528 Query: 235 CLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + GL LE T+T VL + P ++ + R A + Sbjct: 529 SPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L + + +DG++ H Q +T Sbjct: 589 -VIGLQDWILADGKI-------------------------------HTRYVQDLTQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R + E L+ +D + IE RVLA ++ ++ +KAF+ Sbjct: 617 SSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQ 676 Query: 404 TGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ +T R F + P VT + R K + + Y +++ G++ Sbjct: 677 EGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEA 733 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + T R + N Sbjct: 734 KAYIDTYF--------------------------------------------ERFPGIKN 749 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLN 581 + + + + G KRR LP S + G R+ +N Sbjct: 750 YMDEVVREARDKGYVETLFKRR---------------RELPDINSRNFNIRGFAERTAIN 794 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCE 635 + +Q + DIL M+ KA GY ++L VHDEIV E Sbjct: 795 SP------------------IQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLE 836 Query: 636 TPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 P ++ L M +PL A+ Sbjct: 837 VPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] Length = 857 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 82/487 (16%), Positives = 152/487 (31%), Gaps = 123/487 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 EQ L + + G +D + + + + KL E+ G + ++L Sbjct: 457 EVEQPLIEVLAEMEKNGISIDEENWKKVRKNMKEKEEKLLLEIYREA-GEEFNVNSPKQL 515 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + G+ T+T + L Sbjct: 516 SHILFDKMGMPTGKKTKTGYSTAADVLENLAIDYP------------------------- 550 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 ++ L++ ++ P R H +Q++T +SDP+ I Sbjct: 551 ---FVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNI 607 Query: 360 I-----SDCVRSCVIASEGKKL-VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +RS + EG + +D + +E RVLA M+G++ ++AFE ED++ T Sbjct: 608 PVRTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTA 667 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V +VT +QR+ K + + Y ++ G++ +KT Sbjct: 668 SEVFGVPFEEVTSEQRSHAKAVNFGIIYGISDF---GLSKQLGISRKKADEYIKTYL--- 721 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 +++ + E + + E+ + Sbjct: 722 --------------------------------------KRYPGIHEF---MKKMTEEARK 740 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYT 592 GK R LP S + R R+ +NT Sbjct: 741 TGKVKTLFGR---------------YRDLPDINSKNFQRRSFAERTAMNTP--------- 776 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCE-TPDTDEFNAS 645 +Q + DI+ M+ I+L VHDE+V E + E + Sbjct: 777 ---------IQGSAADIMKIAMIQVYGKMKKGKYKSRILLQVHDELVIEAVKEEVEEISK 827 Query: 646 MLYHLMT 652 +L M Sbjct: 828 LLKETME 834 >gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16] gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16] Length = 877 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 88/534 (16%), Positives = 174/534 (32%), Gaps = 72/534 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV 112 + + + ++ R V+ ++ + ++ L +A PS + + Sbjct: 356 DAFRAFARSQEKKKWLFDAK--RAVVALAWH-GVDLNGVDFDLQMASYLLDPSLSSHEIS 412 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC------KGDVT 166 A + + + E + + + K R+ P K + Sbjct: 413 DIATRKGTGGVAEDEAVYGKGAK---------RSLPEEAALAEHLCRKANAMFTLKSTLE 463 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++LE L E L + + G VD + + + L++ + Sbjct: 464 DELAQNEQLELLKKLEMPLSVVLGRMEKEGVRVDREQLEEMGKDLSDRLNTLEKAIHKEA 523 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF + GL T+T VL P + R Sbjct: 524 -GEPFNINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLAGTHPIIEHLLLYRQL- 581 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ ++S+ + H +Q + Sbjct: 582 GKLYSTYIEGLLKVIDSE------------------------------TGKVHTRFNQAL 611 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 T ++DP+ I +R +AS EG K+V AD + IE RVLA ++G++ Sbjct: 612 TQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVASKEGWKIVAADYSQIELRVLAHISGDER 671 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF TG D++ T F+V +VT R K + + Y + + G+ Sbjct: 672 MKEAFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIVYGISDYGLSQ---SLGI 728 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + EN + A E ++ T R ++ + SR Sbjct: 729 TRKEAKDFIDRYLASYPQ------VKAYMENVVKEAKEKGYVQTLLAR-RRYLPELKSRN 781 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLVY 570 + + T G A KR V + ++ ++L L++ Sbjct: 782 FNQRSFAERTAMNTPIQGTAADIIKRAMVKMSEALEETGLKANMLLQVHDELIF 835 >gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855] gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855] Length = 926 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 100/640 (15%), Positives = 191/640 (29%), Gaps = 156/640 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 + + D + HN ++ +LK + + + ++A P L V Sbjct: 403 DVLGPVLARDTEKLGHNLKYDLLLLKQH---GVEVGGTLFDTMVAHYLVAPEENHNLDDV 459 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + + KM +LI + + Y D ++ + Sbjct: 460 ARS--VLNYKMVPIADLIG---DETDRDSMR-------EVEVETAAPYACEDADISYRLA 507 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 LE E L ++ T+ G +D + + ++ + +++E+ Sbjct: 508 DELEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEV 567 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + ++L LF + L + T T T + VL V + Sbjct: 568 FELA-GEEFNINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLD 626 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + KL P R H Sbjct: 627 WR------STYKL-------------------------KSTYLDSLGELVHPETGRLHTS 655 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R + +G L+ AD A IE R+LA M+ Sbjct: 656 FNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMS 715 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ F+ G D++ AR + + P VT +QR+ K + + Y +A Sbjct: 716 GDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISP---WGLAQ 772 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + ++ ++K +R+ Sbjct: 773 RMRMPVDEAQDIIK-----------------------------------------QYRKS 791 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + VS+L NEL + + + + +RR +P + Sbjct: 792 YPGVSQLLNELVEKAQD--KGYAETLLGRRRYLPDIDSS--------------------- 828 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLT 627 N+ R +Q D++ M ++L Sbjct: 829 -------NSNARSAAERVA-----VNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQ 876 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P + + +M+ M +P+ + Sbjct: 877 VHDELVFEVPPDELDAAQTMIDDEMRDALPL-DDVPVTVD 915 >gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I Length = 876 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 86/547 (15%), Positives = 161/547 (29%), Gaps = 135/547 (24%) Query: 142 LYDRNKPNHREAWRLFGEYCK---------GDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 R P+ D + R RL L+ EQ L + + Sbjct: 432 GAKRTVPDEPTLAEHLVRKAAAIWALEEPLMD-ELRRNEQDRL--LTELEQPLAGILANM 488 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + + +++ + L G + ++L T LF + L + Sbjct: 489 EFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA-GQEFNINSPKQLGTVLFDKLQLPVL 547 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T+T +KL P V L + Sbjct: 548 KKTKTGYSTSADVLEKLAPHHEIVE----------------------------HILHYRQ 579 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 + P + H +Q +T + +P+ I +R Sbjct: 580 LGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQA 639 Query: 368 VIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + SE + AD + IE RVLA +A + ++AF G D++ T F+V+ VT Sbjct: 640 FVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTA 699 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A + A + E + + + Sbjct: 700 NMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEFI------ERYFASFPGVKQYM 750 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 +N + A + ++ T R R+ ++ Sbjct: 751 DNIVQEAKQKGYVTTLLHR-----RRYLPDITS--------------------------- 778 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 R+ R R+ +NT +Q + Sbjct: 779 -------------------RNFNVRSF-AERTAMNTP------------------IQGSA 800 Query: 607 RDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 DI+ + M++ + ++L VHDE++ E P + L +M + Sbjct: 801 ADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAVT--L 858 Query: 660 GLPLKAE 666 +PLK + Sbjct: 859 RVPLKVD 865 >gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457] gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457] Length = 575 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 146 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 205 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 206 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 264 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 265 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 300 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 301 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 352 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 353 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 412 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 413 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 439 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 440 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 470 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 471 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 512 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 513 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 564 >gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] Length = 870 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 98/528 (18%), Positives = 169/528 (32%), Gaps = 141/528 (26%) Query: 165 VTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 V + ++L L EQ L ++ + G V + ++ KL Sbjct: 447 VETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 506 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQA 273 QE+ L G + ++L LF + GL LE T+T VL + P Sbjct: 507 TQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 565 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R A + + L + + +DG++ Sbjct: 566 KKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------------- 595 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387 H Q +T + DP+ I +R + E L+ +D + IE R Sbjct: 596 --HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELR 653 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAK 446 VLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 654 VLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDF 713 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +++ G++ + T Sbjct: 714 ---GLSNNLGISRKEAKAYIDTYF------------------------------------ 734 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 R + N + + + + G KRR LP Sbjct: 735 --------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------RELPDIN 771 Query: 567 SLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 S + G R+ +N+ +Q + DIL M+ KA G Sbjct: 772 SRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDKALVAGG 813 Query: 622 YD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 Y ++L VHDEIV E P ++ L M +PL A+ Sbjct: 814 YQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 859 >gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21] gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21] Length = 944 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 96/539 (17%), Positives = 169/539 (31%), Gaps = 80/539 (14%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V V N ++ VL I + T++++ + + +G Sbjct: 415 LKPLLEDDAVLKVFQNGKYDLNVLAR---EGIAVAPIDDTMIISFALDAGRSESGIGGGH 471 Query: 117 K---LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 L+ + + C + P EY D VT + Sbjct: 472 GMDELAERHLGHPCISFKELC------GTGRKAIPFAEVPLDKATEYAAEDADVTWRLHA 525 Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+ E + L + + G VD A L++ E +L+ E+ Sbjct: 526 MLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLAKLSEEFATETKRLEGEIH 585 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKL-TPQAIQVFN 278 + G + ++L LF + G +T Q VL A +V Sbjct: 586 EIA-GQEFTVGSPKQLGEILFDKLGFKGGKKGKSGQYSTDQSVLEKLSGDGAEIAAKVLE 644 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + PR R H Sbjct: 645 WRQLA-------------------------------KLKSTYTDALQEAINPRSGRVHTS 673 Query: 339 LDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 + ++DP+ I I +R +A EG L+ AD + IE R+ A MA Sbjct: 674 YSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDAFVAEEGNVLLAADYSQIELRLAAHMA 733 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +AF GED++ T F +VT+D RA K + A+ Y +A Sbjct: 734 DVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGIS---RWGLAG 786 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + ++ T + + + + E E + G K + + Sbjct: 787 RLGVEADEAQAMIDT--YFKRFPGIQKYILHTLEYVREKGYSETLFGR-----KTWFPRI 839 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK--NNLILMLPSGRSLVY 570 +S+ +A G + KR V + ++ ++ ++L LV+ Sbjct: 840 NSKNQAERQGSERAAINAPIQGTSADIIKRAMVRMNSALEEAGLGHVRMLLQVHDELVF 898 Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 18/189 (9%) Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ-TIENGKAIIARKRRDVPLVYMKK 553 ED+ TA E + R +R + + + + + A + + + Y K+ Sbjct: 746 EDIHARTATEMFGEVTRDTRARAKTINFAILYGISRWGLAGRLGVEADEAQAMIDTYFKR 805 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNT------TTRQLTREYTYGGKLTENIVQAVSR 607 +L + + + T + Q R+ + + I Q S Sbjct: 806 FPGIQKYILHTLEYVREKGYSETLFGRKTWFPRINSKNQAERQGSERAAINAPI-QGTSA 864 Query: 608 DILAEGMMN----ATKAGY---DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA- 658 DI+ M+ +AG ++L VHDE+V E P+ D A +++ +M Sbjct: 865 DIIKRAMVRMNSALEEAGLGHVRMLLQVHDELVFELPEADVAAASAIIERVMAGAAQPYV 924 Query: 659 -KGLPLKAE 666 +PL E Sbjct: 925 ELSVPLGVE 933 >gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27] gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27] Length = 877 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 82/535 (15%), Positives = 156/535 (29%), Gaps = 132/535 (24%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 L RF D + +A E + + E L + Sbjct: 430 LTERFSVPSIANGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 485 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G +D E T++ +E+ L G + ++L LF + Sbjct: 486 LVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKMK 544 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + +P ++ Sbjct: 545 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILA--------------------------- 577 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 + ++ + R H +Q++T +SDP+ I Sbjct: 578 ----YRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 633 Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R+ G LV AD + IE R+LA ++G++ +KAF G+D++ T A Sbjct: 634 GREIRALFYPGTGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 693 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + +VT ++R+ K + + Y ++ G+ + + Sbjct: 694 SQDEVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 741 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 SR ++ + + ++ E GK Sbjct: 742 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 766 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+ LP S + R R+ +NT Sbjct: 767 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 796 Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M + ++L VHDE+V E +++ L Sbjct: 797 ---IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEEL 848 >gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679] gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679] Length = 881 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 + + +++ L ++L + G A Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177 ++ + + + K + P E LF + V + +L Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469 Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 L+ K E L + + G VD + +++Q++ G Sbjct: 470 LADKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T VL ++ P + R A Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + SDG++ H Q +T Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQALTQ 616 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I +R + E + +D + IE RVLA ++ ++ Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676 Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + T + + + E A + ++ Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 769 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + +RR +P + + N + RS R+ Sbjct: 770 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 +NT +Q + DIL M+ K ++L VHDE+ Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 837 Query: 633 VCETPDTDEFNASML-YHLMTSN 654 V E P+ + + L +M Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860 >gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071] gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317] gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071] gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317] Length = 881 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 + + +++ L ++L + G A Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177 ++ + + + K + P E LF + V + +L Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469 Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 L+ K E L + + G VD + +++Q++ G Sbjct: 470 LADKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T VL ++ P + R A Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + SDG++ H Q +T Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I +R + E + +D + IE RVLA ++ ++ Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676 Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + T + + + E A + ++ Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 769 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + +RR +P + + N + RS R+ Sbjct: 770 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 795 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 +NT +Q + DIL M+ K ++L VHDE+ Sbjct: 796 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 837 Query: 633 VCETPDTDEFNASML-YHLMTSN 654 V E P+ + + L +M Sbjct: 838 VFEVPEKELESLDKLVKEVMEQA 860 >gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] Length = 877 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104] gi|332204058|gb|EGJ18123.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47901] Length = 877 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] Length = 882 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 94/520 (18%), Positives = 160/520 (30%), Gaps = 126/520 (24%) Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 ++ + E + E L + + G VDV + T + + + Sbjct: 462 ELAERLSAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 521 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 + L + ++L+T LF L T+T ++L + F + Sbjct: 522 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 581 Query: 280 RMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + A R L L++ + DGR+ H Sbjct: 582 HLLAHREYQKMKTTLEGLIKTVQPDGRI-------------------------------H 610 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390 +Q + +++P+ I +RS I +G +L+ AD + IE RV+A Sbjct: 611 TTFNQTVASTGRLSSTEPNLQNIPVRTEAGRQIRSVFIVGDGFDELMTADYSQIEMRVMA 670 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++A++ GEDL+ +R F+V QVT + R K M L Y A + Sbjct: 671 HLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQ 730 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +G K Sbjct: 731 Q-----------------------------------------------LGIPAGEAKSIM 743 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + L + Q ++G RR LP Sbjct: 744 ESYFERFGGVKKYLDEVVVQARKDGYTATLFGRRRY---------------LPE------ 782 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVL 626 LN+ R L RE L I Q + DI+ M+ +A ++L Sbjct: 783 ---------LNSDNR-LARENAERAALNAPI-QGTAADIIKVAMIRVDRALQGMKSRVLL 831 Query: 627 TVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 VHDE+V E P + +L M S +PL+ Sbjct: 832 QVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEV 869 >gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228] Length = 880 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 105/635 (16%), Positives = 185/635 (29%), Gaps = 153/635 (24%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA- 108 + + +K LE+ V + ++ L ++ + +LA PS+ Sbjct: 362 EAKIAAEIKFILESKKVKKLMPDAKLAFLSL---LKNEVKVAGISFEPLLAFYLLQPSSS 418 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 L + E L EL F + ET + L + +L Sbjct: 419 LPELEEVLSH---------ELSLSFTELETEQKLAVKTSKLFELETKL---------ITK 460 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + L E L + + G VD L++ + + + L G Sbjct: 461 LKENNLLNLYQEIELPLIKVLAQMELNGVKVDKDWLANLSEKLGKRLAIITDKAHKLA-G 519 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T VL + + R A Sbjct: 520 EEFNLNSPKQLGEILFEKLGLPVIKRTKTGYSTNASVLEKLEGKHEIIPLISEYRELA-- 577 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + PP ++ H +Q++T Sbjct: 578 -----------------------------KLKSTYIDSLPPLINDETAKIHTSFNQMVTA 608 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I +R I S L+ D + IE RV A ++G+Q Sbjct: 609 TGRLSSTEPNLQNIPIRTEEGREIRKAFIPSRSDMILLAVDYSQIELRVFAHLSGDQKLK 668 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF D++ T A F V VT D R KV+ + Y A + + + Sbjct: 669 EAFNNEADIHTETAAEVFEVKAEAVTPDLRRHAKVINFGIAYGMSAYGLSQ---DLDIPV 725 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + R S Sbjct: 726 EEAQTYID--------------------------------------------KYFERFSG 741 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRS 578 + + Q E+ + G A RR +P S Y R+ Sbjct: 742 VKKYMEQTIEKVKKLGYAETMFGRRRY---------------IPEINSSNYHRRSFAERT 786 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 +NT VQ + DI+ + M++ +I+L VHDE+ Sbjct: 787 AINTP------------------VQGTAADIMKKSMLDVYSCLKKSELDLNILLQVHDEL 828 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 V E D + A ++ M + +PL + Sbjct: 829 VFEVNRNDLDEAAELIKEKMENTTK--LDVPLIVD 861 >gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 778 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 105/624 (16%), Positives = 201/624 (32%), Gaps = 136/624 (21%) Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSA 108 D K+ E+ ++ V+ + + + ++ P + L + S+ Sbjct: 251 DQKFVDNFKKYFEDENINKVSFDIKEDIVLFNKLGIEINFPYDDIMLMHYL--IDPSRSS 308 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG---DV 165 + ++ ++L+ + ++++ L ++ + + E D Sbjct: 309 YDLKTFSQAFLKYEVLNEEDLLGKGRNKKSYKDLSEKELGKYLSSIINAIEDSLDILTDK 368 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 +++ E +L + + G+ D + V VE L++ + L Sbjct: 369 LKELSMYEL---YKDCEIKLSKVLADMEITGFVCDKNELEKIKDEVSVELEGLEKIIYEL 425 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + L + T+T +VL + P ++ R Sbjct: 426 A-GSEFNINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERYR-E 483 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + L +L E ++ DGR+R T QN Sbjct: 484 MYKLKSTYLESLEECIDGDGRIRSTF-----------------KQN-------------- 512 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T +++P+ + +R A K L+ AD + IE RVLA +A ++ Sbjct: 513 VTATGRLSSTEPNLQNLPIRTEEGRKIRKAFKADNEKILIDADYSQIELRVLAHLANDKK 572 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF D++ T + FN +VTK QR+ K + + Y S GL Sbjct: 573 MQEAFSHDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGIIYG---------ISDYGL 623 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + N + E + + + ++ + A E+ F+ T Sbjct: 624 SQNLNIPRKRAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNT---------------- 667 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 I +RR VP + + ++ R G R Sbjct: 668 ---------------------IFNRRRYVPEI--------------NSKNFNVRSFGE-R 691 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDE 631 LNT +Q + DI+ M + K IVL +HDE Sbjct: 692 VALNTP------------------IQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDE 733 Query: 632 IVCETPDTDEFNASML-YHLMTSN 654 I+ E D A + M Sbjct: 734 IIIEASKKDLQKAKEILKSSMEEA 757 >gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA] gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA] Length = 877 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 174/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R ++ N + + + + G KRR Sbjct: 742 --------------ERFPDIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585] gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585] Length = 877 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 98/552 (17%), Positives = 173/552 (31%), Gaps = 68/552 (12%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 DC P+ L L+N DVT+ N+ + + W ++V Sbjct: 356 DCTVYPLEDADLVRLLDNADVTLEVFNAA-------PLYAKAMAAGGWGSSIVW------ 402 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 L A S ++ E + + + C D Sbjct: 403 DGKLAAYLLDASASKYQISELTASYRAAAAFTCADYPDAGRLADLFCKMKAEITACGED- 461 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + E L + + G VD + E ++ + Sbjct: 462 ----------SLYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLRTELEQVLTRIHME 511 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRA 283 T + ++L LF GL T+ + + L P + R Sbjct: 512 TGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLRDYPLVEDILQYR-AY 570 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ + DGR+ T A RTGR S QN+P + Sbjct: 571 QKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRTE--------- 620 Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + +R+ IA G LV AD + IE R+LA + G++ +AF Sbjct: 621 ----------------LGSQLRAYFIAKPGCVLVDADYSQIELRILAHITGDEHMQQAFL 664 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ +T A+ + + +VT R+ K + + Y GA + A G+++ Sbjct: 665 NGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINFGIMYGKGAYSL---AKDIGVSVKEAD 721 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 +K A A + A ++ T R ++A + S + + Sbjct: 722 AFLKNYLA------AFPKVSGYMDKTIADAKACGYVSTLFGR-RRALPELASSNFNVRSS 774 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLNT 582 + T G A K V + +++ L+L L + Sbjct: 775 GERMARNTPIQGTAADVIKLAMVRVWKRLRNEKMESRLILTVHDEL----IVEAPQAEAE 830 Query: 583 TTRQLTREYTYG 594 Q+ RE G Sbjct: 831 KAAQILREEMEG 842 >gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405] gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405] Length = 936 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 98/616 (15%), Positives = 196/616 (31%), Gaps = 101/616 (16%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL-- 57 D ET S L + V F+ + + P+++ Sbjct: 362 SYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 411 Query: 58 KEA------LENTDVTIVAHNSYFERTV-LKACFNLDIPIHRWICTLVLARSNGLPSA-L 109 K+A L ++ +T++ HN F+ L + I T++ A + Sbjct: 412 KDAKKAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGISA-NLFDTMIAAWLLDPARSSY 470 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 A + K K+L+ + + + Y D +T Sbjct: 471 GMDKLAESILGVKTIRFKDLVKQ-------------GQNFSDIPLKEACPYAAEDADITF 517 Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +K+ PL K E + L + +G + ++ + E + Sbjct: 518 RFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCE 577 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQV 276 +++ L G + ++L+ LF E L T+T VL + P ++ Sbjct: 578 KDIYRL-VGHEFNIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPAKI 636 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + ++ P + R H Sbjct: 637 L-------------------------------DYRALAKLKSTYTDTLPKMTD-KNGRIH 664 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q T + DP+ I +R A +G+ L+ AD + IE +LA Sbjct: 665 TSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIELVILAH 724 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ +Q ++AF TG D++ T + F V V++D R I K + + Y A ++ Sbjct: 725 LSKDQNLVEAFNTGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAF---RL 781 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 AS+ + +K + + N + A + ++ T R ++ Sbjct: 782 ASSLRIPRKRADEFIKA------YFATYSGVSGFMANVCQEAEQRGYVETLMGR-RRYLP 834 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVY 570 +S+ + T G A K + + +KK K + ++L L+ Sbjct: 835 AINSKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELII 894 Query: 571 RDVGNNRSYLNTTTRQ 586 + R + + ++ Sbjct: 895 EAAESEREKVMSLVKE 910 >gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] Length = 916 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 93/504 (18%), Positives = 169/504 (33%), Gaps = 131/504 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + G VD H+L++ + + T++++ + L + +L Sbjct: 516 EMPLVPVLAKMERAGMLVDPDRLHSLSEGLATQITEVERSIRDLAGDETFNIGSPMQLSH 575 Query: 242 WLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF GL + L +T T +VLS + + + R ++ + L+TL Sbjct: 576 VLFDVMGLPTKGLKKTKRGYYSTNAKVLSDLARDHEIVRLILDWREKSKIKSTY-LDTLG 634 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 DGR+ T +Q IT +SDP+ Sbjct: 635 PLRRGDGRVHTT-------------------------------YNQTITATGRLSSSDPN 663 Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I + V++ A EG + D + IE R+LA ++G++ ++AF GED + Sbjct: 664 LQNIPTRSELGRTVKTAFSAGEGSVFLAVDYSQIELRLLAHLSGDEHLVRAFNEGEDFHA 723 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T AR F V ++VT D R+ K + + Y A + + +++ ++ Sbjct: 724 ETAARVFGVPVSEVTPDLRSRAKAVNFGIVYGQQAYGLSQ---SLHISMAEARDMID--- 777 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + + V + + +Q Sbjct: 778 --------------------------------------RYYEAYPGVRTFLDNVVARAKQ 799 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 T + +RR +P + K P R R+ +N Sbjct: 800 T--GYAETMYGRRRHIPELKAKN---------PQLRGF------GERTAMNHPM------ 836 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP-DTDEFN 643 Q + DI+ M ++ ++L VHDE+ E P D E Sbjct: 837 ------------QGTAADIIKIAMARVSRRLEEEGFAAHMILQVHDELDFECPVDEVERL 884 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEG 667 +M+ +M +PL AE Sbjct: 885 TAMVRDVMEHVVD--LRVPLIAEA 906 >gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570] Length = 877 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 98/528 (18%), Positives = 169/528 (32%), Gaps = 141/528 (26%) Query: 165 VTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 V + ++L L EQ L ++ + G V + ++ KL Sbjct: 454 VETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQA 273 QE+ L G + ++L LF + GL LE T+T VL + P Sbjct: 514 TQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ + R A + + L + + +DG++ Sbjct: 573 KKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------------- 602 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387 H Q +T + DP+ I +R + E L+ +D + IE R Sbjct: 603 --HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELR 660 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAK 446 VLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Y Sbjct: 661 VLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDF 720 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +++ G++ + T Sbjct: 721 ---GLSNNLGISRKEAKAYIDTYF------------------------------------ 741 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 R + N + + + + G KRR LP Sbjct: 742 --------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------RELPDIN 778 Query: 567 SLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621 S + G R+ +N+ +Q + DIL M+ KA G Sbjct: 779 SRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDKALVAGG 820 Query: 622 YD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 Y ++L VHDEIV E P ++ L M +PL A+ Sbjct: 821 YQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH] gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH] Length = 905 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 97/688 (14%), Positives = 201/688 (29%), Gaps = 166/688 (24%) Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQVLKEALE 62 + ID Y + ++ + F + + Q E Sbjct: 337 SYVSIDTETTSTNVY--EAQILGISVSFKEFESYYIPIETKEKKSIEREYITQKFNEFF- 393 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLS 119 T ++ N F+ + IP + ++A P +L + E Sbjct: 394 KTKPKLIGQNYKFDYKIFTRHGFNAIPPY---FDTMIAAYVIDPNTKVSLDFLSE----- 445 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177 K L+ K ++ + +N Y D +T +FK Sbjct: 446 -------KYLMH---KNIKYQEIVSQNGTLKDIPLETVSNYAAEDADITFRLFKIFAKKL 495 Query: 178 --------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 + E + + + G +D +Q + E ++ E+ + G+ Sbjct: 496 KEDNLESLMIDVEMPFSNVITEMEENGIYLDKDYLRQYSQELTKELKLIENEIIQ-SIGI 554 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF E L L + T +VL + K ++ Sbjct: 555 KFNLNSSKQLYRVLFDELKLVLPPNVKKHSTSIKVLEAIKDQHESIPKI----------- 603 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +Q+ S+ + ++ H Q Sbjct: 604 --------------------IQYRKISKLKNTYTDNLIKFINAKTNKIHTNFIQAKAATG 643 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +++ P+ I +R EG + AD + IE +LA + + ++AF Sbjct: 644 RILSTAPNLQNIPIKDEKGRKIREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEAF 703 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + ED+++ T ++ F V +VT R + K + + Y A ++ + Sbjct: 704 KNKEDIHIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSA---HGLSQELSIKREEA 760 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + + + + +N + A ++ + T Sbjct: 761 QKFIDS------YFNLYSKIKIFIQNRIDFARKNGYSETLL------------------- 795 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 ++RR + + + G R +N+ Sbjct: 796 ------------------KRRRYIKEINSQNHS---------------ERSGAERIAINS 822 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636 T +Q + DI+ M+ I+L VHDEI+ E+ Sbjct: 823 T------------------IQGSASDIMKIAMVRVYNEFKSKNLKSKILLQVHDEILIES 864 Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLK 664 P + A + M N ++ LPL+ Sbjct: 865 PKQECEEAKTIIKEMMEN-AYPLKLPLR 891 >gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 906 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 107/676 (15%), Positives = 196/676 (28%), Gaps = 151/676 (22%) Query: 16 LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAH 71 L G Y D + D D + P L L + H Sbjct: 343 LAVVGTHLAYDADATALAIVSA--DGEGRYID--TSALQPDDEAALASWLADPGPPKALH 398 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131 + + + LA P + L + + + Sbjct: 399 EAKL---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLEDLSLRYLRRELR 450 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------KEQEL 185 + L D N +A + + + + + L ++S E + Sbjct: 451 AETAEQQQLSLLDDNDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLGGMELPV 510 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G VD+ L L Q + + E G + ++L+T LF Sbjct: 511 QRVLAGMEHTGIAVDLELLGEL-QSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQTVLFD 569 Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDG 302 E + T+T + + L + F + R + ++ L+ ++ SDG Sbjct: 570 ELEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLTHRDVTRLKVTVDGLLASVASDG 629 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 R+ T +Q I +++P+ I Sbjct: 630 RIHTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIR 658 Query: 361 ---SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R + +G +L+ AD + IE R++A ++ ++ ++AF TGEDL+ +R+ Sbjct: 659 TEAGRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRA 718 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F V +VT + R K M L Y A + + Sbjct: 719 FGVPIGEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKIS--------------------- 757 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 E K+ +R + + L +Q ++G Sbjct: 758 --------------------------TEEAKEQMDAYFARFGGVRDYLMNIVDQARKDGY 791 Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596 RR LP S + + RE Sbjct: 792 TSTVLGRRRY---------------LPELDS----------------SNRQVREAAERAA 820 Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-H 649 L I Q + DI+ M+ KA ++L VHDE++ E + L Sbjct: 821 LNAPI-QGSAADIIKVAMIEVDKAIKEAGLKSRMLLQVHDELLFEVAPGERERLEALARE 879 Query: 650 LMTSNPSWAKGLPLKA 665 M ++ +PL+ Sbjct: 880 KMGG--AYPLDVPLEV 893 >gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] Length = 930 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 88/504 (17%), Positives = 165/504 (32%), Gaps = 127/504 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L Y + G V+ A + V KL+QE+ T G + + Sbjct: 530 YTDIEMPLIYSLFHMEQEGVKVERAELKEYGDRLKVGIAKLEQEIYQET-GHEFNINSPK 588 Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF + L T+T T VL P ++ + R ++ L Sbjct: 589 QLGEILFEQMELPGGKKTKTGYSTAADVLEKLAPDYPVVQKILDYRQLTKLNSTYA-EGL 647 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + DGR+ G + +Q IT +++P Sbjct: 648 AAYIGEDGRIHG-------------------------------KFNQTITATGRISSTEP 676 Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I + +R + EG V AD + IE R+LA M+G++ ++A+ + +D++ Sbjct: 677 NLQNIPVRMALGREIRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIH 736 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T ++ F+V +VT QR K + + Y A + GL+++ + + Sbjct: 737 AITASQVFHVPLDEVTPLQRRNAKAVNFGIVYGISAFGLSE-----GLSISRKEAVEYID 791 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 E + + F + + E ++ Sbjct: 792 KYFETYPGVKTFL----DGLVKQGKEQGYV------------------------------ 817 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + +RR +P + K N + R +N+ Sbjct: 818 -------TTLYGRRRPIPEL---KSANFMQRQF------------GERVAMNSP------ 849 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EF 642 +Q + D++ M+ + IVL +HDE++ ET + E Sbjct: 850 ------------IQGTAADVMKIAMIAVDRELKKRGLKSRIVLQIHDELLIETARDEIEA 897 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 +L M L ++AE Sbjct: 898 VKEILTDKMKHAADLRVSLEVEAE 921 >gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] Length = 886 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 105/638 (16%), Positives = 205/638 (32%), Gaps = 157/638 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L++ LE+ + + L LDI ++LA Sbjct: 367 LRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYLVNNEN-------- 415 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 +S + E L + E K E F V + + LE Sbjct: 416 --NSNDLGEVAHLYGDYSVKTDLEVYGKGKKKAVPEDDEFFEHLAAKVVVIEKLKQPLLE 473 Query: 177 PLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 L EQ+ Y + + G V+ ++ + L ++ +L+ ++ Sbjct: 474 KLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFALKLQELEHKIYQQA- 532 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMRAS 284 G + ++L LF + L T+T + ++L +P ++ + R A Sbjct: 533 GEEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQIA- 591 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L+E + DGR+ H Q +T Sbjct: 592 KIQNTYVKGLLECIQPDGRI-------------------------------HTRYLQTLT 620 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQW 397 + DP+ I +R + S +G D + +E RVLA ++G++ Sbjct: 621 ATGRLSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEH 679 Query: 398 KLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF++G D++ T + F++ P +VT R K + + Y ++ G Sbjct: 680 MQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLG 736 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + E +P Sbjct: 737 ISRKQAKTFIDN----------------YFEQYP-------------------------- 754 Query: 517 VSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ + + +A ++ E G A I +RR +P ++ K + RS Sbjct: 755 --QIKDYMDKAIKEAREKGYAETIMHRRRYLPDIHSKNF---------NVRSFA------ 797 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629 R+ +N+ +Q + DI+ M+N K +VL VH Sbjct: 798 ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVH 839 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ + P + + +M S + +PL A+ Sbjct: 840 DELIFDVPKAELDTIKKIVPEVMQSAVT--LDVPLIAD 875 >gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ST398] Length = 876 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 190/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVAFITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 VFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603] gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603] Length = 876 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 100/629 (15%), Positives = 190/629 (30%), Gaps = 136/629 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 L LEN + +++ V LDI I ++L+ P + V Sbjct: 356 SDLVNWLENPNTAKTVYDAKKTYVVAHR---LDIDIQNIQFDVMLSSYIIDPSRTIDDVN 412 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + L Q ++ +A + KG+ H D H + K ++ + + Sbjct: 413 SVVSLYGQH--YVQDNVAIYGKGKKHHIPEDEILNKHVASIIEAVSASKSEMQNQLKEYN 470 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + L+ E L + + + G DV + + + + L + + G + Sbjct: 471 QESLLADLELPLAEILSEMEEIGIYTDVNDLQHMEKEIQEKLDVLIKNIHE-AAGEEFNI 529 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF L + T+T VL + P + R Sbjct: 530 NSPKQLGVVLFETLELPVIKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQL-------- 581 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 S+ + +R H +Q + Sbjct: 582 -----------------------SKLQSTYVEGLQK-VISEDNRIHTRFNQTLAQTGRLS 617 Query: 351 TSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + DP+ I +R S ++ AD + IE RVLA + ++ +AF Sbjct: 618 SVDPNLQNIPIRLEEGRKIRKAFKPTSTDSVILSADYSQIELRVLAHITQDESMKEAFIN 677 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D++ T + F+V +V R K + + Y + + G+ Sbjct: 678 GHDIHTATAMKVFDVGADEVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAKA 734 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + ++ D+ + + + A F+ T Sbjct: 735 FID------DYLDSFPGVKQYMSDIVKDAKAQDFVETLL--------------------- 767 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +RR +P + + + RS R+ +NT Sbjct: 768 ----------------HRRRYIPDITSRNF---------NLRSFA------ERTAMNTP- 795 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMN------ATKAGYDIVLTVHDEIVCETPD 638 +Q + DI+ M+ TK ++L VHDE++ E P Sbjct: 796 -----------------IQGSAADIIKLAMVQFNKEVQHTKYHAKLLLQVHDELIFEVPK 838 Query: 639 TDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 + + S + +M S +PLK E Sbjct: 839 DEVESFSQFVEDIMESALE--LDVPLKVE 865 >gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M] gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M] Length = 899 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 93/504 (18%), Positives = 164/504 (32%), Gaps = 129/504 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E + ++ + G VD+ + L Q ++ + E G + + Sbjct: 496 LADMELPVQHVLAEMETAGIAVDLTMLGGL-QSHFADQIRDAAEAAYAVIGKQINLGSPK 554 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTL 294 +L+ LF E G+ T+T + + L + F + A R + ++ L Sbjct: 555 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGL 614 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ DGR+ T +Q I +++P Sbjct: 615 LNSVADDGRIHTT-------------------------------FNQTIAATGRLSSTEP 643 Query: 355 DPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R + +G +L+ AD + IE R++A ++ ++ ++AF TGEDL Sbjct: 644 NLQNIPIRTDAGRQIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDL 703 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +R+F V +VT + R K M L Y A + Sbjct: 704 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSSQLKIS------------- 750 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 E K Q SR + + L Sbjct: 751 ----------------------------------TEDAKVQMDQYFSRFGGVRDYLMAVV 776 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 EQ ++G RR LP L+++ RQ Sbjct: 777 EQARKDGYTSTVLGRRRY---------------LPE---------------LDSSNRQ-V 805 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642 RE L I Q + DI+ M+ KA ++L VHDE++ E + Sbjct: 806 REAAERAALNAPI-QGSAADIIKVAMIEVDKALKEHALKSRMLLQVHDELLFEVAAGERE 864 Query: 643 NASMLYH-LMTSNPSWAKGLPLKA 665 L M S ++ +PL+ Sbjct: 865 QIEALVRDKMGS--AYPLDVPLEV 886 >gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus JKD6159] Length = 876 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 192/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V L+I I ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASH--RLEIDIQNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291] Length = 913 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 113/673 (16%), Positives = 195/673 (28%), Gaps = 145/673 (21%) Query: 16 LTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSY 74 L G A D A D D DP L L + H + Sbjct: 350 LAVAGTHL-AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK 408 Query: 75 FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + + LA P + L + + + Sbjct: 409 L---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLDDLALRYLRRELRAEN 460 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188 + L D +A + + + + + L LS E + + Sbjct: 461 PQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRV 520 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + + G VD+ L L Q + + E G + ++L+ LF E Sbjct: 521 LAGMENAGIAVDLDLLSEL-QSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQ 579 Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLR 305 + T+T + + L + F + A R A + ++ L+ ++ SDGR+ Sbjct: 580 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRIH 639 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 T +Q I +++P+ I Sbjct: 640 TT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTEA 668 Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 R + +G +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F V Sbjct: 669 GRRTRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGV 728 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT + R K M L Y A + + Sbjct: 729 PIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKIS------------------------ 764 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 E K+ +R + + LH EQ ++G Sbjct: 765 -----------------------TEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTST 801 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 RR LP S + + RE L Sbjct: 802 VLGRRRY---------------LPELDS----------------SNRQVREAAERAALNA 830 Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT 652 I Q + DI+ M+ KA I+L VHDE++ E + L M Sbjct: 831 PI-QGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMG 889 Query: 653 SNPSWAKGLPLKA 665 ++ +PL+ Sbjct: 890 G--AYPLDVPLEV 900 >gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122] gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122] Length = 876 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 191/624 (30%), Gaps = 128/624 (20%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L LEN + V +++ + V +DI ++LA P + V Sbjct: 357 ELVSWLENPNTKKVVYDAK-KTYVASHRLGIDI--QNISFDIMLASYIIDPSRTISDVQS 413 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + L Q K+ ++ + KG+ + D + + + K ++ E + + Sbjct: 414 VVSLYGQSF--VKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQ 471 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 +E L+ E L + + + G DV H L ++ + KLD + ++ G + Sbjct: 472 VELLADLELPLAKILSEMEEIGIYTDV---HDLEEMEKEIQEKLDVLIRNIHDAAGEDFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 529 INSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQL------- 581 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 582 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA + ++ +AF Sbjct: 617 SSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + + G+ Sbjct: 677 NGDDIHTATAMKVFGVEADQVDILMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A ++ T R ++ SR L Sbjct: 734 AFID------DYLASFPGVKQYMSDIVKDAKALGYVETLLHR-RRYIPDITSRNFNLRGF 786 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + T G A K V Sbjct: 787 AERTAMNTPIQGSAADIIKLAMVKF----------------------------------- 811 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 Q +E TY KL +L VHDE++ E P ++ + Sbjct: 812 -AQKMKETTYQAKL---------------------------LLQVHDELIFEVPKSEVDS 843 Query: 644 ASM-LYHLMTSNPSWAKGLPLKAE 666 S + +M + +PLK + Sbjct: 844 FSEFVEEIMENALQ--LDVPLKVD 865 >gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 117/272 (43%), Gaps = 60/272 (22%) Query: 416 SFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAP 472 F V ++TK R GK+ ELALGY G A M + GL+ + Sbjct: 1 MFGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMGALAMGLSEDE----------- 49 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + WR + +++ W ++ +A + + Sbjct: 50 ------------------------------LPGLVSTWRNANPHITQFWWDVDEAAVRAV 79 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT------ 584 RK V L+ + L MLPSGR L Y +G N+ + T Sbjct: 80 RE------RKETQVGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGE 133 Query: 585 -RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 ++ R TYG KL ENIVQ SRDILAE MM KAG+ IV VHDE V E P+ + + Sbjct: 134 NKKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEG-KSS 192 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +M PSW GLPL+A+GYE + Y+K Sbjct: 193 VEEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224 >gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1] Length = 1015 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 94/491 (19%), Positives = 160/491 (32%), Gaps = 128/491 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + + G VD V E ++ QE+ G + R ++L Sbjct: 614 ELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQ-FNIRSAQQLGE 672 Query: 242 WLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF GL T TT Q L P + + R + + L L + Sbjct: 673 LLFGTLGLPTVGKTRGGQATTSQDALEKLSGRHPVVDLILDFR-KLEKLRSTYLEPLPKL 731 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 +++ GR+ H +Q+ T +S+P+ Sbjct: 732 VDAAGRI-------------------------------HSTFNQLATATGRLSSSNPNLQ 760 Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I + +RSC A+EG LV AD + IE RVLA M+ + L AF G D++ T Sbjct: 761 NIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRT 820 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 ++ AP VT DQR K + L Y G QK+ + +N Sbjct: 821 AGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGP---QKLGQELRITVNEA---------- 867 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 ++ + + + + ++ + A + Sbjct: 868 -------------------------------KQFIERYFSRLQHLRNFYDNVEAAARE-- 894 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + +A +RR +P ++ NT R R Sbjct: 895 QGHVTTLAGRRRLLPEMHS----------------------------ENTQLRSQARR-- 924 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPD-TDEFNAS 645 + ++Q + DI+ M+ A ++L VHDE++ E P+ + Sbjct: 925 ---QAINTLIQGSAADIIKLAMLAAHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGE 981 Query: 646 MLYHLMTSNPS 656 L LM+ Sbjct: 982 RLALLMSEVRP 992 >gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 956 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 373 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 425 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 426 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 482 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 483 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 532 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 533 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 593 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 651 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 652 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 680 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 681 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 740 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A Sbjct: 741 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 797 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 798 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 850 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 851 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 903 >gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] Length = 886 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 110/664 (16%), Positives = 198/664 (29%), Gaps = 144/664 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y E L F D L D + LK+ LE+ V N+ + L Sbjct: 334 YHESP---LAGFVIGDGKWWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 389 Query: 84 FNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + + L+LA S L + A + +E E+ + K Sbjct: 390 --LGVDLAGVDFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDE--EVYGKGAK--RA 443 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 D H K + ++L E+ L + + G V Sbjct: 444 IPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHV 503 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D A + + +L+Q + G + ++L LF + L + T+T Sbjct: 504 DAATLKEMGSKLVEREAELEQAIYQEA-GEEFNINSPKQLGVILFEKMKLPVIKKTKTGY 562 Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 VL P + R S+ + L++ ++ D Sbjct: 563 STAVDVLEKLADRAPIVQDILAYRQ-ISKLQSTYITGLLKVIHQDD-------------- 607 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 + H Q +T + DP+ I +R S Sbjct: 608 ----------------QKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPS 651 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQR 429 G K+ +D + +E RVLA + G++ F G+D++ T R F++ + +VT + R Sbjct: 652 APGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMR 711 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ +++ + + Sbjct: 712 RQAKAVNFGIVYGISDY---GLAQNIHVSRPQAHEFIQS------YFKEFPGVEKYVHDI 762 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 E A + ++ + +RR +P + Sbjct: 763 VELAKQQGYVE-------------------------------------TLTHRRRYLPEI 785 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + K RS R +NT +Q + DI Sbjct: 786 HAKSFTQ---------RSFA------ERMAMNTP------------------IQGSAADI 812 Query: 610 LAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + M+ KA ++L +HDE+V E P+ + L +M S +P Sbjct: 813 IKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPSIMDSAVK--LDVP 870 Query: 663 LKAE 666 LK E Sbjct: 871 LKVE 874 >gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1] Length = 959 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 536 RFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906 >gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO] gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO] Length = 868 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 92/623 (14%), Positives = 182/623 (29%), Gaps = 156/623 (25%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 + + +++ L ++L + G A Sbjct: 352 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 408 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177 ++ + + + K + P E LF + V + +L Sbjct: 409 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 456 Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 L+ K E L + + G VD + +++Q++ G Sbjct: 457 LAEKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 515 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T VL ++ P + R A Sbjct: 516 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 575 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + SDG++ H Q +T Sbjct: 576 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 603 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I +R + E + +D + IE RVLA ++ ++ Sbjct: 604 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 663 Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 664 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 720 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + T + + + E A + ++ Sbjct: 721 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVE------------------ 756 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + +RR +P + + N + RS R+ Sbjct: 757 -------------------TLYHRRRYLPDI----NSRNYNI-----RSFA------ERT 782 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 +NT +Q + DIL M+ K ++L VHDE+ Sbjct: 783 AINTP------------------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDEL 824 Query: 633 VCETPDTDEFNASML-YHLMTSN 654 V E P+ + + L +M Sbjct: 825 VFEVPEKELESLDKLVKEVMEQA 847 >gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] Length = 870 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 441 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIVVKKETLLEMQAENE 500 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 501 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 559 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 560 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 595 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 596 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 647 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 648 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 707 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 708 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 734 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 735 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 765 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 766 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 807 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 808 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 859 >gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8] gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8] Length = 949 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 100/640 (15%), Positives = 191/640 (29%), Gaps = 156/640 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112 + + D + HN ++ +LK + + + ++A P L V Sbjct: 426 DVLGPVLARDTEKLGHNLKYDLLLLKQH---GVEVGGTLFDTMVAHYLVAPEENHNLDDV 482 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 + + + KM +LI + + Y D ++ + Sbjct: 483 ARS--VLNYKMVPIADLIG---DETDRDSMR-------EVDVETAAPYACEDADISYRLA 530 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 LE E L ++ T+ G +D + + ++ + +++E+ Sbjct: 531 DELEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEV 590 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278 L G + ++L LF + L + T T T + VL V + Sbjct: 591 FELA-GEEFNINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLD 649 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + KL P R H Sbjct: 650 WR------STYKL-------------------------KSTYLDSLGELVHPETGRLHTS 678 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 +Q T +SDP+ I +R + +G L+ AD A IE R+LA M+ Sbjct: 679 FNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMS 738 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 G+ F+ G D++ AR + + P VT +QR+ K + + Y +A Sbjct: 739 GDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISP---WGLAQ 795 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + ++ ++K +R+ Sbjct: 796 RMRMPVDEAQDIIK-----------------------------------------QYRKS 814 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + VS+L NEL + + + + +RR +P + Sbjct: 815 YPGVSQLLNELVEKAQD--KGYAETLLGRRRYLPDIDSS--------------------- 851 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLT 627 N+ R +Q D++ M ++L Sbjct: 852 -------NSNARSAAERVA-----VNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQ 899 Query: 628 VHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 VHDE+V E P + + +M+ M +P+ + Sbjct: 900 VHDELVFEVPPDELDAAQTMIDDEMRDALPL-DDVPVTVD 938 >gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] Length = 879 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 94/501 (18%), Positives = 150/501 (29%), Gaps = 130/501 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L ++ + RG VD A L + + L + ++L+ Sbjct: 479 EVPLTHILAEMEARGIAVDKAALEELAADYEAQIADEVTAARELAEDDQLNLSSPKQLQK 538 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAM 298 LF + GL T+T + +KL Q F N + A R ++ L+ A+ Sbjct: 539 VLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAHREYQKMKSTIDGLINAI 598 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + DGR+R T G +S+P+ Sbjct: 599 DGDGRIRTTFNQKG-------------------------------AATGRLSSSEPNLQN 627 Query: 359 II-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +RS EG L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 628 IPVRTEAGRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHNYV 687 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 +R F+V +VT + R K + L Y A + G++ + Sbjct: 688 GSRVFDVPVDEVTPELRRRVKALSYGLVYGLSAFGLSQ---QLGISPGEAKGI------- 737 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 R + L + E Sbjct: 738 -------------------------------------MENYFDRFGGVKRYLDKVVEAAK 760 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 E G RR L + S R RE Sbjct: 761 ETGYTETLYGRRRY-----------LPELASSNRV--------------------ARENA 789 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646 L I Q + DI+ M+ +A ++L VHDE+V E + Sbjct: 790 ERAALNAPI-QGTAADIIKLAMLRVDRALRNANLKSRVLLQVHDELVLEIAPGE---LEQ 845 Query: 647 LYHLMTSNPSWAKGL--PLKA 665 + L+ N A L PL Sbjct: 846 IQQLLEENMDSAASLRVPLDV 866 >gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] Length = 924 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 109/683 (15%), Positives = 200/683 (29%), Gaps = 173/683 (25%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-------CVHDPVMPQV 56 L ID ET S + + D ++ + C+ + + Sbjct: 346 LAIDTETSS--------LDAHQTD--LVGISLSTKIGKACYIPIGHKFKGCLKKETVIKK 395 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113 LK LE+ V + N F+ VL I ++ T++++ + + Sbjct: 396 LKPLLEDKSVKKIGQNIKFDFIVLYKH---GINMNSMEDTMLMSYVLDAGKNRHNMDTLS 452 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 E K KE++ K EY D +T ++K Sbjct: 453 EIH--LQHKTISFKEIVGTGKKEINFS----------DVELDKAMEYAAEDADITYRLYK 500 Query: 174 ------RLEPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +LE L++ E+ L + + G +D L++ + + +KL++E+ Sbjct: 501 IFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVF 560 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-KLTPQAIQVFN 278 ++ + ++L ++ + + + T T VL K + + Sbjct: 561 KISK-KKFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILD 619 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R S+ P P R H Sbjct: 620 WRQ-------------------------------VSKLKNTYSDALPEHINPNTKRVHTS 648 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 T +SDP+ I +R IA +G L+ AD IE R+LA +A Sbjct: 649 FLLAATTTGRLASSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLA 708 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + KAF ED++ T ++ FNV +V +D R K + + Y K + Sbjct: 709 EVKELKKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQIN 768 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + +A+ F PE I + K R+ Sbjct: 769 VSN-------------------HEADEFLNAYFLKFPE-------IKIYMDNTIKFCRKS 802 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 I R+ + + N Sbjct: 803 -------------------GYVTNIFGRRSHFNGINDKNFNVRNF--------------- 828 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVL 626 R+ +N +Q + +I+ M+ K I+L Sbjct: 829 -QERAAINAP------------------IQGSASEIMRLAMIRLNKKFESIKNNKSKILL 869 Query: 627 TVHDEIVCETPDTDEFNASMLYH 649 +HDE++ E P + N + + Sbjct: 870 QIHDELIFEVPVKEVKNITEIIK 892 >gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E] Length = 959 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 536 RFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906 >gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] Length = 902 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 87/542 (16%), Positives = 157/542 (28%), Gaps = 66/542 (12%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-------ALKAVG 113 L + + H+ V K I + ++A P + A Sbjct: 384 LGRSRPAKIGHDLKTAWIVFKKH---GIELRGIAFDTMVAAYLLDPGKQNYGIDRVAAEC 440 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + S + GK +A R K + + + Sbjct: 441 LGENIDSYEDVTGKGKSQVGFD-TIDIGRAAAYSCAAADAARRMHPVLKRKLD-ESRLTE 498 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E + E L + + RG D +L+ + + L + Sbjct: 499 LFEKI---ELPLITVLARMEFRGITADAEKLESLSIDFQKALDRTADTIYDLAK-EKFNI 554 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF + GL + T++ VL P A V R A Sbjct: 555 QSPKQLAYILFEKLGLRVVKKTKSGPSTDMAVLEELALEHPIADHVLVFRTLA------- 607 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + PR R H +Q + Sbjct: 608 ------------------------KLKGTYADALGKLINPRTGRIHTSYNQTVAATGRLS 643 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +SDP+ I +RS I + G L+ AD + IE R+LA + ++ L+AF Sbjct: 644 SSDPNLQNIPIRTEEGRKIRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDD 703 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T A F V+P +VT + R K + + Y G +A ++ T Sbjct: 704 EDIHRRTAAEMFGVSPIEVTPEMRRQAKTINFGIIYGMGPF---GLAQRLRISTKTARTA 760 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + F E + +G ++ + SR + Sbjct: 761 ID--KYFQGYRGVRRFIDTTIELARRLGYSETLLGR-----RRFIPELQSRNKTIRQLGE 813 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLNTTT 584 + T G A K+ + +++L LV+ + Sbjct: 814 RLAINTPLQGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAAAQELV 873 Query: 585 RQ 586 R+ Sbjct: 874 RR 875 >gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1] Length = 959 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906 >gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 922 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 89/498 (17%), Positives = 163/498 (32%), Gaps = 115/498 (23%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 +S + L + + G VD A+ + E + E+ L G + Sbjct: 521 VSQVDLPLVEVLTQMERDGVAVDEAVLQRQTEAFSSEIADIADEIYKLA-GHEFNLNSPR 579 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSN---KKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF E GL ++ + L P + RM + + Sbjct: 580 QLAEVLFNELGLPGGKKLKSGYSTSAEDLMHLQDLHPIVDLILRYRMLSKLLST------ 633 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + G +++ A R H Q +T +SDP Sbjct: 634 --------FIVGLHKYIAA------------------DHRIHTTFHQTLTQTGRLSSSDP 667 Query: 355 DPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I +R+ IA+ G L+ AD + IE R+LA ++G+ LKAF ED++ Sbjct: 668 NLQNIPARTEEGRRIRAAFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIH 727 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T AR F++ P VT + R +GK + ++ Y A + A +++ + + Sbjct: 728 ALTAARVFHMDPVDVTSEHRRVGKTINFSIVYGISAFSL---AQDLHISVAEAKNYIAEY 784 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 A + ++ N+L + + Sbjct: 785 YA-----------------------------------------TYPQIKAYLNDLVERAK 803 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 I+ + ++RR +P + K L R +NT + Sbjct: 804 --IDGYVETMFKRRRYIPELKSKNYNRRLF---------------GERVAMNTPIQ---- 842 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 G + + A+ + K ++L +HDE+V E P+ + + L Sbjct: 843 -----GTAADIMRLAMVNLARK---LREKKLKSHMILQIHDELVLEVPEPEFAEVAELLR 894 Query: 650 -LMTSNPSWAKGLPLKAE 666 M LP++ E Sbjct: 895 NEMERVIDLKVSLPVELE 912 >gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] Length = 877 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 170/555 (30%), Gaps = 141/555 (25%) Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188 P + + + Y + ++L+ ++ E L Y Sbjct: 430 PKTKKNETPSDEIPENILKYACYNAYVAY--KAKDALTEKLKETEMLDIYNNVEIPLTYA 487 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + + L++++ + G + ++L LF E Sbjct: 488 LYDMEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEA-GHEFNINSPKQLGEILFGEMQ 546 Query: 249 LHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L T+T VL + P ++ R A Sbjct: 547 LPGGKKTKTGYSTSASVLEKLEPDYPFVSKILEYRQLA---------------------- 584 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----I 360 + + +R H + +Q IT +++P+ I + Sbjct: 585 ---------KLKSTYADGLAVY-IGEDNRIHGKFNQTITATGRISSTEPNLQNIPVRMPL 634 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R I EG + AD + IE R+LA M+ ++ + A+ +D++ T + F+V Sbjct: 635 GREIRKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATASLVFHVP 694 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VTK+QR+ K + + Y + +++ ++ +K Sbjct: 695 LEEVTKEQRSNAKAVNFGIVYGISSF---GLSNDLSISRKEAEQYIKDYFISYP------ 745 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + N L + ++ E G ++ Sbjct: 746 --------------------------------------GIKNYLDNSVKEAKEKGYSVTM 767 Query: 541 -RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 +RR +P L SG + R G R +N+ Sbjct: 768 FGRRRPIP-------------ELTSGNFMQ-RQFGE-RVAMNSP---------------- 796 Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653 +Q + DI+ M+N K IVL VHDE++ E + + + ++ Sbjct: 797 --IQGSAADIMKIAMINVAKELKEKDLKSKIVLQVHDELLIEAYENE---VEQVKDILKR 851 Query: 654 NPSWAKGL--PLKAE 666 N A L PL + Sbjct: 852 NMEQAAHLNVPLDVD 866 >gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169] Length = 956 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 373 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 425 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 426 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 482 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 483 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 532 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 533 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 593 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 651 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 652 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 680 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 681 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 740 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A Sbjct: 741 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 797 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 798 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 850 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 851 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 903 >gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] Length = 875 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 101/640 (15%), Positives = 200/640 (31%), Gaps = 157/640 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 L+ LE+ +S + LK I + L+LA P+ Sbjct: 354 DTLRRWLEDATKIKYMSDSKAAQASLKRA---GIQLAGVDFDLLLASYINNPALSGDDIA 410 Query: 115 ALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 L L ++ + + + K R P+ + + + Sbjct: 411 TLARELGYYDVQADEAVYGKGAK---------RAIPDLDQLAQHVSRKA----FAVWSLQ 457 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +LE L E L + + G V+ A + Q ++ + ++QE+ Sbjct: 458 PKLEALLKDNEQFDLYKNLELPLAGILGEMESEGITVNRATLEKMGQELNDKLVVIEQEI 517 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279 + G + ++L LF + GL + T+T T VL + + Sbjct: 518 YAEA-GETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQSEHAIIEHILLY 576 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + + L++ ++ S+ H Sbjct: 577 RQL-GKLQSTYIEGLLKEIHES------------------------------NSKVHTRF 605 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393 Q +T ++DP+ I +R + S E L AD + IE RVLA M+ Sbjct: 606 QQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEDWILFSADYSQIELRVLAHMS 665 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +Q ++AF G D++ T F+V+ +V + R K + + Y + Sbjct: 666 EDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVYGISDYGLSQ--- 722 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + A+ + E++ + + ++ ++A + ++ T Sbjct: 723 NLDITRKEAANFI------EKYFASFPGVKQYMDDIVQNAKFNGYVTTILN--------- 767 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 +RR +P + + RS Sbjct: 768 ----------------------------RRRYLPDITSSNF---------NLRSFA---- 786 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DI+ + M++ K ++L Sbjct: 787 --ERTAMNTP------------------IQGSAADIIKKAMIDMDARLKKEKMQAKLLLQ 826 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 VHDE++ E P + + +M + A +PLK + Sbjct: 827 VHDELIFEAPKEEIALLEKIVPEVMENAIELA--VPLKVD 864 >gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974] gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2] Length = 877 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIVVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] Length = 924 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 110/676 (16%), Positives = 203/676 (30%), Gaps = 159/676 (23%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 L ID ET S +D + + + + + H + C+ + + LK LE+ Sbjct: 346 LAIDTET-SSLDAHQTDLVGISLSTKIGQACYIPIGHKFK--GCLKKETVIKKLKPLLED 402 Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120 V + N F+ VL I ++ T++++ + + E Sbjct: 403 KSVKKIGQNIKFDFIVLYKQ---GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIH--LQ 457 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK------R 174 K KE++ K EY D +T ++K + Sbjct: 458 HKTISFKEIVGTGKKEINFS----------DVELDKAMEYAAEDADITYRLYKIFSKNLK 507 Query: 175 LEPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 LE L++ E+ L + + G +D L++ + + +KL++E+ ++ Sbjct: 508 LEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVFKISK-KE 566 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-KLTPQAIQVFNNRMRASR 285 + ++L ++ + + + T T VL K + + R Sbjct: 567 FNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILDWRQ---- 622 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 S+ P P R H T Sbjct: 623 ---------------------------VSKLKNTYSDALPEHINPNTKRVHTSFLLAATT 655 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +SDP+ I +R IA +G L+ AD IE R+LA +A + K Sbjct: 656 TGRLASSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKK 715 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF ED++ T ++ FNV +V +D R K + + Y K + + Sbjct: 716 AFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSN---- 771 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 +A+ F PE I + K R+ Sbjct: 772 ---------------HEADEFLNAYFLKFPE-------IKIYMDNTIKFCRKS------- 802 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 I R+ + + N R+ + Sbjct: 803 ------------GYVTNIFGRRSHFNGINDKNFNVRNF----------------QERAAI 834 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEIV 633 N +Q + +I+ M+ K I+L +HDE++ Sbjct: 835 NAP------------------IQGSASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELI 876 Query: 634 CETPDTDEFNASMLYH 649 E P + N + + Sbjct: 877 FEVPVKEVKNITEIIK 892 >gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39] gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39] Length = 877 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8] Length = 956 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 373 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 425 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 426 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 482 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 483 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 532 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 533 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 593 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 651 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 652 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 680 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 681 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 740 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A Sbjct: 741 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 797 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 798 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 850 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 851 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 903 >gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 959 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906 >gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici] Length = 878 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 96/630 (15%), Positives = 186/630 (29%), Gaps = 149/630 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLS 119 L + ++ LK +++ L+LA P+ V K+ Sbjct: 363 LADETKKKSMFDAKRASVALK-WKGIEL--RGVAFDLLLAAYLLNPAQDAGDVAAVAKMK 419 Query: 120 SQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL--- 175 + + + + K R+ P+ + R L Sbjct: 420 QYEAVRPDEAVYGKGAK---------RSLPDEPTLAEHLVRKAAAIWALERPFLDELRSN 470 Query: 176 ---EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L EQ L + + G VD + + + ++Q + L G + Sbjct: 471 EQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELA-GQEFN 529 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T VL + + R + Sbjct: 530 INSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL-GKLQST 588 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L++ ++ D + H +Q +T Sbjct: 589 YIEGLLKVVHHD------------------------------TGKVHTMFNQALTQTGRL 618 Query: 350 ITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R + SE G + AD + IE RVLA +A + ++AF Sbjct: 619 SSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFR 678 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T F+V+ +VT R K + + Y +A + A Sbjct: 679 RDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAA 735 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + E + + + EN + A + ++ T Sbjct: 736 EFI------ERYFASFPGVKRYMENIVQEAKQKGYVTTLL-------------------- 769 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +RR +P + R+ R R +NT Sbjct: 770 -----------------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP 797 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637 +Q + DI+ + M++ + ++L VHDE++ E P Sbjct: 798 ------------------IQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAP 839 Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + L +M +PLK + Sbjct: 840 KEEMERLCRLVPEVMEQAVE--LRVPLKVD 867 >gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905] gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905] Length = 875 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 103/666 (15%), Positives = 199/666 (29%), Gaps = 157/666 (23%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 L D + +L+ LE++ +S + LK I Sbjct: 328 TCALLGIALSDGNKTQYIPFDIAAKSDILRCWLEDSSKIKYMSDSKASQAALKRA---GI 384 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRN 146 + LVLA P L L ++ + + + K R Sbjct: 385 QLAGVDFDLVLASYINNPGLSGDDVATLARELGYYDVQADETVYGKGAK---------RA 435 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRG 196 P + + + +LE L + E L + + G Sbjct: 436 IPEIDKLAQHVSRKA----YAVWSLQPKLEALLKENEQFDLYKDLELPLAAILGEMESEG 491 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 V+ A + Q ++ + L+QE+ + G + ++L LF + GL + T+ Sbjct: 492 ITVNRATLEKMGQELNEKLVVLEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKKTK 550 Query: 257 T---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T T VL K + R + + L++ ++ Sbjct: 551 TGYSTAADVLEKLKSEHAIIEYILLYRQL-GKLQSTYIEGLLKEIHE------------- 596 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 + S+ H Q +T ++DP+ I +R Sbjct: 597 -----------------KDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAF 639 Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + S E L AD + IE RVLA M+ ++ ++AF G D++ T F+V+ +V + Sbjct: 640 VPSNENWILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSN 699 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y + + A + A + + Sbjct: 700 MRRAAKAVNFGIVYGISDYGLSQ---NLDITRKEAATFIDKYFASFP------GVKQYMD 750 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 + ++A + ++ T +RR +P Sbjct: 751 DIVQNAKFNGYVTTILN-------------------------------------RRRYLP 773 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 + + RS R+ +NT +Q + Sbjct: 774 DITSSNF---------NLRSFA------ERTAMNTP------------------IQGSAA 800 Query: 608 DILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660 DI+ + M++ ++L VHDE++ E P + + +M + Sbjct: 801 DIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIE--LS 858 Query: 661 LPLKAE 666 +PLK + Sbjct: 859 VPLKVD 864 >gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4] gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4] Length = 912 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 113/662 (17%), Positives = 191/662 (28%), Gaps = 146/662 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLD 87 + AF D D A L + ++ + H+ L A Sbjct: 359 DLKAVAFATADGEGAYVDVTAMDEADDRALSAWLADPEIRKIGHDLK---VPLHAVRARG 415 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 LA P L + + + Sbjct: 416 WTFGGLNMDTALAAYLARPGQ-----RTFGLDDLALRYLHRELRSEAGDGDGQLSLLDGG 470 Query: 148 PNHREAWRLFGEYCKGDVTVTRE--IFKRLEPL------SSKEQELWYLDQTINDRGYCV 199 + E + E K + LE L + E L + + G V Sbjct: 471 ADELEQKEISAELVKARAIFELAGALAAELEELGGAKLLAELELPLLEVITELEAAGIAV 530 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D L T+ + + G + ++L+ LF E G+ T+T Sbjct: 531 DTDQLTELEAHYLSRVTQAAESAYEVI-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGY 589 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRT 316 + + L + F + R A + L++++ DGR+ T Sbjct: 590 TTDADALQSLFEKTEHPFLQHLLEHRDATRLRTTVEGLIKSVADDGRIHTT--------- 640 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 L Q I + +P+ I +R + Sbjct: 641 ----------------------LQQTIAATGRLSSIEPNLQNIPVRTEEGRRIRDAFVVG 678 Query: 372 EGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 +G +L+ AD + IE R++A ++ ++ ++AF +GEDL+ +R+F+V A++T +QR Sbjct: 679 DGYAELMTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRY 738 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K M L Y A + + Sbjct: 739 RVKAMSYGLAYGLSAYGLSQQLKIS----------------------------------- 763 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 E K+ SR + + L + + G RR Sbjct: 764 ------------TEDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIFGRRRY---- 807 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 LP LN+ RQ RE L I Q + DI+ Sbjct: 808 -----------LP---------------DLNSDNRQ-RREMAERMALNAPI-QGSAADII 839 Query: 611 AEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPL 663 M+N +A ++L VHDE+V E D + + L M S A +PL Sbjct: 840 KVAMLNVHRALAEAGARSRVLLQVHDELVLEIADGERSDVEKLVREGMGSAAELA--VPL 897 Query: 664 KA 665 + Sbjct: 898 EV 899 >gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950] Length = 908 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 112/674 (16%), Positives = 194/674 (28%), Gaps = 147/674 (21%) Query: 16 LTKCGIC-KYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNS 73 L G Y D + D D DP L L + H + Sbjct: 345 LAVVGTHLAYDADATALAIVSA--DGEGRYIDTATLDPEDEAALASWLADPGPPKALHEA 402 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 + + LA P + L + + + Sbjct: 403 KL---AMHDLAGRGWTLAGVTSDTALAAYLVRPGQ-----RSFSLDDLSLRYLRRELRAE 454 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWY 187 + L D +A + + + + + L LS E + Sbjct: 455 NPEQQQLSLLDDTDGTDDQAVQTLLLRAVAVLDLADALDEELARINSTSLLSGMELPVQR 514 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + + G VD+ L L Q + E G + ++L+ LF E Sbjct: 515 VLAGMENAGIAVDLELLTEL-QSDFAHLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDEL 573 Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRL 304 + T+T + + L + F + A R A + ++ L+ ++ SDGR+ Sbjct: 574 EMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRI 633 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 T +Q I +++P+ I Sbjct: 634 HTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTE 662 Query: 361 -SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R + +G +L+ AD + IE R++A ++ ++ ++AF TGEDL+ +R+F Sbjct: 663 AGRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFG 722 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V +VT + R K M L Y A + Sbjct: 723 VPIEEVTAELRRRVKAMSYGLAYGLSAYGLSAQLKIS----------------------- 759 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 E K Q +R + + L EQ ++G Sbjct: 760 ------------------------TEEAKDQMEQYFARFGGVRDYLMAVVEQARKDGYTS 795 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 RR LP S + + RE L Sbjct: 796 TVFGRRRY---------------LPELDS----------------SNRQVREAAERAALN 824 Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 I Q + DI+ M+ KA I+L VHDE++ E + L M Sbjct: 825 API-QGSAADIIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQLEALARDKM 883 Query: 652 TSNPSWAKGLPLKA 665 ++ +PL+ Sbjct: 884 GG--AYPLDVPLEV 895 >gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4] gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4] Length = 959 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 188/594 (31%), Gaps = 92/594 (15%) Query: 6 IDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56 ID ET D+ GI D + +D + D +P Sbjct: 376 IDTET---TDINWQHAKLVGISVSTADYE----GYYIPVGHTADFDVLLDNQLPIDTVLS 428 Query: 57 -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSALKAVG 113 K LEN ++ + + ++ + K ++I W +LA N + Sbjct: 429 AFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHGMDA 485 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + +++ + K + A +Y D +T +F Sbjct: 486 LAKHYLGVQTTTFEDVAGKGAKQ----------LSFDKVAMDAASQYACEDADITFRLFN 535 Query: 174 RLEPLSSKE----QELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 R +++ Q L++L+ + G +D L+ D + L E Sbjct: 536 RFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRM 281 E + + ++L LF + G+ T+T + K+ I V Sbjct: 596 ERIAD-EPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEHPLIDVVLEHR 654 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ +TL A + GR+ H Q Sbjct: 655 SLSKLKSTYTDTLANAADEQGRV-------------------------------HTSYHQ 683 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +SDP+ I +R IA +G+ ++ AD + IE R++A +G++ Sbjct: 684 ALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDE 743 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF D++ T A ++VT +R K + L Y A +A Sbjct: 744 SLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAF---GLAKQIE 800 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ +K A E A + ++ T R K S Sbjct: 801 VDRAVAQDYIKRYFARYP------AILEYMERTKTMAKQLGYVQTILGR-KLYSPDIQSS 853 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + +A G A K + V K++ L+L LV+ Sbjct: 854 NRMIKDAAERAAINAPLQGSAAEIIKLAMI-AVDEVLPKDDAKLLLQVHDELVF 906 >gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205] gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205] Length = 899 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 105/629 (16%), Positives = 187/629 (29%), Gaps = 147/629 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L + V H+S + A I +A P + V AL+ Sbjct: 381 LADETRPKVLHDSK---PAVLAFAAHGWSIEGITRDTQIAAYLARPDQRSYDLVDLALRY 437 Query: 119 SSQKME----EGKELIARFCK--GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 +++ + +L GE + L R + A D ++R+ Sbjct: 438 LHRELRVDTPDTGQLTFEGLGNDGEAEQNLMLRARATLDLAD-------AIDAELSRDGE 490 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + ++ E L + ++ G D L E Q G + Sbjct: 491 QSSRLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAAQGAYE-AVGREFN 549 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL--- 289 ++L+ LF+E GL +T + + L Q + R Sbjct: 550 LGSPKQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLGHLLRHRDVAKLKT 609 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 ++ L+++++ DGR+ T +Q + Sbjct: 610 TVDGLLKSVSDDGRIHTT-------------------------------FNQTVAATGRL 638 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R + EG + L+ AD + IE R++A ++ + + AF Sbjct: 639 SSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSADDVLIDAFN 698 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +G D + T + F V +VT DQR K M L Y A + G+ Sbjct: 699 SGRDFHAATASSVFQVPVEEVTTDQRRKIKAMNYGLAYGLSAFGLSQ---QLGVTAEEAR 755 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L++ + + + Sbjct: 756 GLMEI--------------------------------------------YFAGFGGVRDY 771 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 L + + +G RR LP L + Sbjct: 772 LQEVVARARHDGYTETVLGRRRY---------------LP---------------DLVSD 801 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637 RQ RE L I Q + DI+ MM A +D ++L VHDE+V E Sbjct: 802 NRQ-RREMAERMALNAPI-QGSAADIIKVAMMRVDSAVHDAGLRSRMLLQVHDELVFEVA 859 Query: 638 DTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 + L M ++ +PL+ Sbjct: 860 PGERERLEELVRREMGE--AYPLSVPLEV 886 >gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415] gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415] Length = 886 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 114/663 (17%), Positives = 210/663 (31%), Gaps = 159/663 (23%) Query: 32 LFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERT-VLKACFNL 86 + AF + + D + D ++ EAL T F+R+ VL + + Sbjct: 344 ILAFSWGNKEAIYVSKNLDLLKD----RLFVEALSKPIKTY-----DFKRSKVLLSHLGI 394 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145 ++P LA+ + L Q + + E+ + K + Sbjct: 395 ELPTAD--FDSRLAKYLLSTVEDNELSTIASLYGQTPLAKDVEVYGKGAK---------K 443 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCV 199 P + ++ + V + ++L L E L + + G V Sbjct: 444 AVPEDQVLFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLAKMEITGIKV 503 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH--LEDLTET 257 + + V L QE+ + G + ++L T LF E GL + T+T Sbjct: 504 NRQTLKDMEVENQVTLDALTQEIYDMA-GQEFNINSPKQLGTILFEEMGLPTSMTKKTKT 562 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 + ++L P A V L++ ++ Sbjct: 563 GYSTAVDVLERLAPHAPIVAK----------------------------ILEYRQIAKLQ 594 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS- 371 L + H Q +T + DP+ I +R Sbjct: 595 STYVVGLQDFIL-DDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFTPEW 653 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430 E L+ +D + IE RVLA ++G++ + AF+ GED++ T R FN+A P VT + R Sbjct: 654 EDSVLLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRR 713 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y + G++ + + T + + + E Sbjct: 714 NAKAVNFGVVYGISDYGLSQ---NLGISRKAAKNYIAT------YFERFPGIKDYMERVV 764 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 A + ++ + ++RR +P + Sbjct: 765 REAKDKGYV-------------------------------------ETLFKRRRTLPDI- 786 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 + R+ R+ R+ +N+ +Q + DIL Sbjct: 787 -------------NSRNFNIRNF-AERTAINSP------------------IQGSAADIL 814 Query: 611 AEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPL 663 M+N +A ++L VHDEIV E P+ + L M S A +PL Sbjct: 815 KIAMINLDQALEAGSFKTKMLLQVHDEIVLEVPNAELSAIKKLVKKTMESAIVLA--VPL 872 Query: 664 KAE 666 A+ Sbjct: 873 LAD 875 >gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785] gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785] Length = 886 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 103/640 (16%), Positives = 206/640 (32%), Gaps = 161/640 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 L++ LE+ + + L L++ ++LA ++ Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHR---LNLKAEGLDYDMLLASYLVNNENNSNDLGEV 423 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A ++ E+ + K + F + + Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAV------------PDDNEFFEHLAAKVAVIEKLKTPL 471 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 LE L EQ+ Y + + G V+ ++ + L V+ +L+ ++ Sbjct: 472 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282 G + ++L LF + GL T+T + ++L +P ++ + R Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L+E + DGR+ H Q Sbjct: 591 A-KIQNTYVKGLLECIQPDGRI-------------------------------HTRYLQT 618 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395 +T + DP+ I +R + S +G D + +E RVLA ++G+ Sbjct: 619 LTATGRLSSVDPNLQNIPTRTNEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677 Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF++G D++ T + F++ P +VT R K + + Y ++ Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ ++ E +P Sbjct: 735 LGISRKQAKTFIEN----------------YFEQYP------------------------ 754 Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ N + A ++ ENG A I +RR +P ++ K + RS Sbjct: 755 ----QIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 R+ +N+ +Q + DI+ M+N K +VL Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 VHDE++ + P + + +M S +PL A+ Sbjct: 838 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 875 >gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] Length = 875 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 194/583 (33%), Gaps = 76/583 (13%) Query: 21 ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68 + Y E ++LF+ + V D +V +E E+ ++ Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESKEIKK 385 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + +N+ RT+L+ L I + + LA P + E L+S+ + + Sbjct: 386 ITYNAKNPRTILRK---LGIDFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 F K + + + E D + ++K EQ L Sbjct: 441 REDEFLKIKEVNIMPN---------LYKVLEEKIKDQDMEELLYK-------VEQPLTET 484 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ VD + L + E E+ S++ + ++L LF + Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEKFNINSPKQLGKILFEKLD 543 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + P ++ R + + L A++ DG++ Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365 + TGR S QN+P + +R Sbjct: 603 SNFNQT-VTATGRLSSTEPNLQNIPIKYE-------------------------MGREIR 636 Query: 366 SCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V +V Sbjct: 637 KVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEV 696 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T R+ K + + Y G + + + + E + + + Sbjct: 697 TPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN----VKL 747 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 EN E A+E ++ T R ++ ++ S + + + G A K Sbjct: 748 YLENIVEEAVEKGYVSTILNR-RRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806 Query: 545 DVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 V + K+ N ++L L+ + + ++ Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELERIKALVKK 849 >gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10] Length = 986 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 94/497 (18%), Positives = 164/497 (32%), Gaps = 121/497 (24%) Query: 170 EIFKRLEPLSSKE------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + K+LE L KE L + + G CV H + + V+ +L+QE+ Sbjct: 572 RLTKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIY 631 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280 T G + ++L LF + L T+T T VL P ++ + R Sbjct: 632 GET-GEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYR 690 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + L + DGR H + Sbjct: 691 QLTKLKSTYA-DGLAGYIREDGR-------------------------------IHGTFN 718 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q IT +++P+ I + +R + EG V AD + IE RVLA M+G+ Sbjct: 719 QTITATGRLSSTEPNLQNIPVRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGD 778 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++A+ ED++ T + F+V +VT QR K + + Y A ++ Sbjct: 779 ERLIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYGISAF---GLSEDL 835 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + N E + D + F + E E Sbjct: 836 SITRKEALEYI--NRYFETYPDVKKFLDRLVEEGKEKGYV-------------------- 873 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + ++RR VP + S ++ + R G Sbjct: 874 ---------------------TTMFKRRRPVPEL--------------SSKNFMQRSFGE 898 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R +N+ + G + I A++R + + IVL VHDE++ E Sbjct: 899 -RVAMNSPIQ---------GTAADIIKIAMNR---VDNRLRREGLKSKIVLQVHDELLIE 945 Query: 636 TPDTDEFNA-SMLYHLM 651 + ++L M Sbjct: 946 AKKEELKRVQTILSEEM 962 >gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] Length = 948 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 119/709 (16%), Positives = 218/709 (30%), Gaps = 190/709 (26%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70 D G+ A ++ + D+ + LK+ +++ V VA Sbjct: 362 DTETDGLD--ALCAGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVA 419 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGK 127 HN+ F+ VL +P + +LA +L + A L K Sbjct: 420 HNAKFDLEVLTRY---GLPEAHPLYDTMLAHYLIDADQGHSLDEL--AGGLLRYDTIRYK 474 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------L 178 +L + L P +L +Y D VT ++ L L Sbjct: 475 DLA-----PQESFALRTDVDP------KLLCDYASEDAYVTLRLYHALHKQLSPTEQRLL 523 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLE 237 + E L Y+ + RG +D+ Q + +L++E++S + GL + Sbjct: 524 TEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPK 583 Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF E + T+T T + L + L P + Sbjct: 584 QIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALIL--------------- 628 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + A + P P + H +Q +T +S Sbjct: 629 ----------------DYREARKLLNTYIDPLPKMCYP-DGKLHTSYNQAVTATGRLSSS 671 Query: 353 DPDPLQI-----ISDCVRSCVIASE--------------------GKKLVVADLAGIEAR 387 +P+ I + +R +A G L+ AD + +E R Sbjct: 672 NPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADYSQVELR 731 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 V+A ++ + + +F +G+D++ T A+ F VAP +VT R+ K Sbjct: 732 VMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTAN----------- 780 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G+ + + +G A E +K Sbjct: 781 ---FGINYGITPYGLSQRLNIP-----------------------------VGEAAELIK 808 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + + + +++A E G A RR L + R+ Sbjct: 809 EYF-ATFTHIQAF---MNEAIALATERGYTETAFGRR---------------RQLRNLRT 849 Query: 568 LVYRDVGNN-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--- 623 GN R+ +N +Q + DI+ M+ + Sbjct: 850 ARGAQRGNEERNAINAP------------------IQGTAADIIKIAMIRVEEELTKQQL 891 Query: 624 ---IVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAK-GLPLKAE 666 +VL VHDE+V + D A ++ M +W + +PL E Sbjct: 892 RSYLVLQVHDELVLNVYLDELDRVTA-LVREAMEG--AWPECSVPLVVE 937 >gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426] gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426] Length = 878 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 434 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 493 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 494 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 552 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 553 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 584 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 585 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 644 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 645 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 704 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 705 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 755 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 756 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 778 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 779 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 805 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 806 IKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 863 Query: 663 LKAE 666 LK + Sbjct: 864 LKVD 867 >gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 928 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 99/637 (15%), Positives = 168/637 (26%), Gaps = 139/637 (21%) Query: 34 AFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A D DP + L + L + H L A + Sbjct: 382 AISVPSGDAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAH---GWELGG 438 Query: 93 WICTLVLARSNGLPS----ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + LA P L + + L ++ G +L + Sbjct: 439 VVSDTALAAYLVQPGQRRFDLADLCRKYLGRELEEDSSGDQLTLDLGGEDGAGSGRQHLL 498 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 A G ++ + L E L + + G D L Sbjct: 499 AVRASA----TRDLAGVLSAELDKRGGTHLLHEVELPLVDVLARLERAGIAADRPYLEEL 554 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267 + + G + ++L+ LF + GL +T + Sbjct: 555 QGEFAAAGRVAVERAHEI-VGREFNLGSPKQLQQVLFEDLGLPRTKKIKTGYTTDADALA 613 Query: 268 KLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 L Q + R + L++ + DGR+ T Sbjct: 614 WLASQTDNELPAVLLHHRDQTKLRTTVEGLIKTVADDGRIHTT----------------- 656 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVV 378 +Q + ++DP+ I +R + EG + L+ Sbjct: 657 --------------FNQTVAATGRLSSTDPNLQNIPVRTDVGRRIRRAFVVGEGYEELLT 702 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++GEQ + AF +G D + A+ F+V QV + R+ K M Sbjct: 703 ADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSYG 762 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 L Y A + G+ Sbjct: 763 LAYGLSAYGLSQ---QLGITPEES------------------------------------ 783 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 K+ + + + L+ E+ G RR Sbjct: 784 --------KRLMEDYFAEFGGVRDYLNAMVEEARRVGYTETILGRRRY------------ 823 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 LP L + RQ RE L I Q + DI+ M+ Sbjct: 824 ---LP---------------DLTSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLRVD 863 Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLYH 649 A ++L VHDE+V E + + Sbjct: 864 AALTEGGLTSRVLLQVHDELVVEVAPGERAEVENIVA 900 >gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018] gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018] Length = 896 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 105/596 (17%), Positives = 205/596 (34%), Gaps = 102/596 (17%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-QVLK 58 D ET S +D+ + ++ F+F ++++ H + + K Sbjct: 331 SFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAK 380 Query: 59 EALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 A+ + V N ++ ++K N DI + + T++L+ + + K Sbjct: 381 NAIIQLNRYKLVLQNFKYDYEIIKN--NFDIELRLYADTMILSWLLNTNEKVGLDYQIDK 438 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--- 174 KM +++ KGE + EY D +T +FK+ Sbjct: 439 YFDHKMISFTDVVK---KGENFSNV----------DIERACEYAAEDALMTLRLFKKQLE 485 Query: 175 ----------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E + Y+ + G VDV L ++ + +L ++ Sbjct: 486 IFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQ 545 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 T G+ + ++L LF GL T+T VL+ + R Sbjct: 546 -TSGVEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYR- 603 Query: 282 RASRSAVLKLNTLVE--AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 A + + L+E + + D R+ + G Sbjct: 604 EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTG--------------------------- 636 Query: 340 DQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T + +P+ I + +R I +G KLV D + IE R+LA + Sbjct: 637 ----TATGRLSSKNPNLQNIPTKSDSTIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQ 692 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AFE D++ T + F + K++R I K + L Y G+ +K+ T Sbjct: 693 DKALVEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGS---KKLGET 746 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + + +A + ++ + A + ++ T R K + Sbjct: 747 LGIPSKEAKQYIDS------YFEAFKSVKDYLKSIEDFAHINGYVKTLLNR--KRLFDFN 798 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 S + + + T+ G A K + + KD N+ L+L LV+ Sbjct: 799 SANAMMKAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVF 854 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 10/71 (14%) Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNA 644 + Y + + Q + D++ M+N ++L +HDE+V E DEF Sbjct: 805 KAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVFEV--KDEFVE 862 Query: 645 SM---LYHLMT 652 + + ++M Sbjct: 863 EITFSIKNIME 873 >gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 931 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 103/523 (19%), Positives = 169/523 (32%), Gaps = 130/523 (24%) Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D E + E L + + RG ++ A V E +L QE Sbjct: 510 AQDAAARLEGVGLSALMEELEMPLIPVLADMELRGIRINRAEFSGFLAEVQKELDRLTQE 569 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277 + ++ G + R ++L LF GL T+ +T Q VL P + Sbjct: 570 VYAVAGGQ-FNIRSSQQLGELLFGTLGLKAGSKTKGGQASTSQAVLEKLAGKHPVIDTIL 628 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R + + L L + R+ H Sbjct: 629 EYR-KLEKLRSTYLEPLPRLAQENDRI-------------------------------HT 656 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 +Q+ T +S P+ I +R C A+ G KLV AD + IE RVLA + Sbjct: 657 TFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNKLVAADYSQIELRVLAHV 716 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + +++F ED++ T ++V A VT DQR K + L Y G QK+A Sbjct: 717 SADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTINFGLIYGMGP---QKLA 773 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 + LN + + Sbjct: 774 QELKVTLNEAKE-----------------------------------------FIERYFS 792 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 K S + E ++ + Q+ + +A +RR +P ++ Sbjct: 793 KLSHLKEFYDNVEQSARE--HGFVTTLAGRRRLLPEIH---------------------- 828 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN------ATKAGYDIVL 626 S N Q R+ +VQ + DI+ M+ + ++L Sbjct: 829 -----SDNNQLRSQARRQ------AINTVVQGSAADIIKIAMLKAAADETLQQLNAALIL 877 Query: 627 TVHDEIVCETP-DTDEFNASMLYHLMTSNPS--WAKGLPLKAE 666 VHDE++ E P D E A L +M+S A +PL + Sbjct: 878 QVHDELLLEAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVD 920 >gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994] gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994] Length = 909 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 106/676 (15%), Positives = 200/676 (29%), Gaps = 169/676 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL----KEALENTD 65 D G+ + ++ F+F D +H + + Sbjct: 344 DTETTGLDPSKDH--LVGFSFSTDGKTGYYVPMMHSYLGVGDQVSTEAAAKAIRLIFEHR 401 Query: 66 VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125 V HN F+ + +D + + T+VLA +L + L +M Sbjct: 402 VI--GHNIKFDLHFVTRFLGVD-RLSIYADTMVLAWLTDSSRSLAMDNLSQSLLHHEMIH 458 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------ 179 K+ + + + A +Y D +T +++ L+ Sbjct: 459 FKDTVK-------------KGENFASVAIEDACKYAGEDAYITYRLYEVLKEQLLLKGGQ 505 Query: 180 -------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E + G VD A+ + V E L +++ S G V + Sbjct: 506 EALDEAFDVEFPFTLTLLGMEKEGIAVDTAVLELFKKEVAHEIATLTEQIHS-ACGTVFN 564 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF GL T+T ++VL + P + R + Sbjct: 565 LNSPKQLGVILFETLGLPHGKKTKTGYSTDEQVLEGLQFEHPMIPMLLQYR-EYHKLYST 623 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L+ QN P SR + Q T Sbjct: 624 YIEPLIALA----------------------------QNDP-SSRIYTSFVQTGTATGRL 654 Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + +P+ I + +R +A GKKL+ D + IE R+LA + + + AF Sbjct: 655 SSKNPNLQNIPVKTALGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNE 714 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 G D+++ T F A+ +R I K + L Y G +K++ T G+ Sbjct: 715 GHDIHMQTAIALFG---AEDASRKRNIAKTVNFGLLYGMGQ---KKLSDTLGITTKEAKE 768 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + + + + V +N + Sbjct: 769 -----------------------------------------IIERYFETFPSVKGYFNGI 787 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + ++ I + ++ R+R Y D G+ L Sbjct: 788 VEQAKE-IGYVETLLHRRR--------------------------YFDFGSATPML---- 816 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILA------EGMMNATKAGYDIVLTVHDEIVCETP- 637 + Y + + Q + D++ + M+ ++L +HDE++ E Sbjct: 817 -----KAAYERESVNTVFQGSASDLIKLSMNKIDTMIRTEGLRARMLLQIHDELIFEVDA 871 Query: 638 DTDEFNASMLYHLMTS 653 D E A M Sbjct: 872 DVAEEYAVRFVDAMER 887 >gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] Length = 932 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 98/686 (14%), Positives = 183/686 (26%), Gaps = 170/686 (24%) Query: 11 RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------------DPVMP- 54 +D G+ + ++ + + H MP Sbjct: 346 YVAVDTETTGLDE--LTAELVGVSLSVEPGQACYIPLTHKASRSDDLFGSDDLAPGQMPF 403 Query: 55 ----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 Q+L LE+ + + N ++ + + + + A GL Sbjct: 404 EEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ-LGITVAPIDDTMLMSYAMHAGL-HGHG 461 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + K L+ T + + Y D VT Sbjct: 462 MDTLSERYLGHTPLPIKPLLGSGKSAVTFDKV----------PMEDAVPYAAEDADVTLR 511 Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 ++K +P + E+ L + + G VD ++ + L+ Sbjct: 512 LWKLFKPQLHRAEVTKVYETLERPLVPVLAQMERAGILVDRDTLSRMSNAFAQKMAGLEA 571 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276 ++ L G + +L LF + GL + +T VL A +V Sbjct: 572 DIHELA-GETFNVGSPAQLGEILFGKMGLDGGKKGKTGKYSTGADVLEDLATEHDLARRV 630 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R S+ R H Sbjct: 631 LDWRQL-------------------------------SKLKSTYTDALQDHVNANTGRVH 659 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 ++DP+ I +R +A EGK LV D + IE R+LA Sbjct: 660 TCYSIAGAATGRLASTDPNLQNIPIRSEEGRRIREAFVAPEGKVLVALDYSQIELRILAH 719 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A +AFE G+D++ T + F+V Q+T + R K + + Y + Sbjct: 720 IAQIDALKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYGISGFGLAR- 778 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 + +A+ F E P Sbjct: 779 ------------------NLRIPRAEAQGFIDRYFERFP--------------------- 799 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +T + A++ V ++ GR + Sbjct: 800 ----------------GIRTYMDDTKAFAKEHGFVQTLF--------------GRKINTP 829 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----IVLT 627 ++G R +Q + D++ M+ +A D ++L Sbjct: 830 NIGAKGPQAGFAAR----------AAINAPIQGTAADVIRRAMIRMPEAIADLPAKMLLQ 879 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMT 652 VHDE++ E E +M Sbjct: 880 VHDELLFEVEKGAEDALIAAAREVME 905 >gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] Length = 948 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 97/570 (17%), Positives = 179/570 (31%), Gaps = 107/570 (18%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEALENTDVTIVA 70 D G+ A ++ + D+ + LK+ +++ V VA Sbjct: 362 DTETDGLD--ALCAGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVA 419 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGK 127 HN+ F+ VL +P + +LA +L + A L K Sbjct: 420 HNAKFDLEVLTRY---GLPEAHPLYDTMLAHYLIDADQGHSLDEL--AGGLLRYDTIRYK 474 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------L 178 +L + L P +L +Y D VT ++ L L Sbjct: 475 DLA-----PQESFALRTDVDP------KLLCDYASEDAYVTLRLYHALHKQLSPTEQRLL 523 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLE 237 + E L Y+ + RG +D+ Q + +L++E++S + GL + Sbjct: 524 TEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPK 583 Query: 238 KLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ LF E + T+T T + L + L P + Sbjct: 584 QIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALIL--------------- 628 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + A + P P + H +Q +T +S Sbjct: 629 ----------------DYREARKLLNTYIDPLPKMCYP-DGKLHTSYNQAVTATGRLSSS 671 Query: 353 DPDPLQI-----ISDCVRSCVIASE--------------------GKKLVVADLAGIEAR 387 +P+ I + +R +A G L+ AD + +E R Sbjct: 672 NPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADYSQVELR 731 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 V+A ++ + + +F +G+D++ T A+ F VAP +VT R+ K + Y Sbjct: 732 VMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINYGITPYG 791 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + + + A L+K E+ + A E + TA R + Sbjct: 792 LSQ---RLNIPVGEAAELIK------EYFATFTHIQAFMNKAIALATERGYTETAFGR-R 841 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + R + + G A Sbjct: 842 RQLRNLRTARGAQRGNEERNAINAPIQGTA 871 >gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183] gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183] Length = 906 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 108/646 (16%), Positives = 189/646 (29%), Gaps = 143/646 (22%) Query: 29 CVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 V A + + L E L + H++ L A Sbjct: 358 EVDALAVATASGAAVYVEPAELGEADERALAEWLADPHRPKAIHDAKGPMLALAA---RG 414 Query: 88 IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + LA LP L+ +++ E E + D Sbjct: 415 MTLAGVTSDTALAAYLALPGQRTFDLGDLVLRYLHKELREHAEPGGQL---TIDGIADDD 471 Query: 146 NKPNHREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 R E D + R RL L E L + + G VDV Sbjct: 472 AARELAVRARAVLELAEALDRDLERRGAARL--LHEVELPLTGVLAAMERAGIAVDVDHF 529 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 L+ + + +Q+ + G + ++++ LF E GL T+T Sbjct: 530 IQLSASLGGQAKDTEQQAHA-AVGHEFNLGSPKQVQQVLFEELGLPKTKRTKTGYTTDSE 588 Query: 265 SNKKL-----TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + L P + R A ++ +++L+ DGR+ Sbjct: 589 ALNSLRAKSDHPVLEHILRWREVAKLKSI--VDSLIPMAAEDGRI--------------- 631 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374 H +Q++ ++DP+ I +R + EG Sbjct: 632 ----------------HTTFNQMVAATGRLSSTDPNLQNIPIRTAEGRQIREGFVVGEGY 675 Query: 375 K-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 + L+ AD + IE R++A ++G++ ++AF +G D + T +R F + P Q+ + RA K Sbjct: 676 ECLLTADYSQIELRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIK 735 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L Y +AS G+ + Sbjct: 736 AMNYGLAYGLSPF---GLASQLGITPDEA------------------------------- 761 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + + + + L + ++G RR Sbjct: 762 -------------RVLMEEYFQQFGGVRDYLQGVVRRARQDGYTETILGRRRY------- 801 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 LP L + RQ RE L I Q + DI+ Sbjct: 802 --------LP---------------DLTSDNRQ-RREMAERMALNAPI-QGSAADIIKVA 836 Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652 + +A ++L VHDE+V E + L MT Sbjct: 837 SLRVDRALRERGLASRMLLQVHDELVFEVAPGELEELKELVREQMT 882 >gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1] gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1] Length = 986 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 94/497 (18%), Positives = 164/497 (32%), Gaps = 121/497 (24%) Query: 170 EIFKRLEPLSSKE------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 + K+LE L KE L + + G CV H + + V+ +L+QE+ Sbjct: 572 RLMKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIY 631 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280 T G + ++L LF + L T+T T VL P ++ + R Sbjct: 632 GET-GEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYR 690 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + L + DGR H + Sbjct: 691 QLTKLKSTYA-DGLAGYIREDGR-------------------------------IHGTFN 718 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q IT +++P+ I + +R + EG V AD + IE RVLA M+G+ Sbjct: 719 QTITATGRLSSTEPNLQNIPVRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGD 778 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++A+ ED++ T + F+V +VT QR K + + Y A ++ Sbjct: 779 ERLIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYGISAF---GLSEDL 835 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + + N E + D + F + E E Sbjct: 836 SITRKEALEYI--NRYFETYPDVKKFLDRLVEEGKEKGYV-------------------- 873 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + ++RR VP + S ++ + R G Sbjct: 874 ---------------------TTMFKRRRPVPEL--------------SSKNFMQRSFGE 898 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R +N+ + G + I A++R + + IVL VHDE++ E Sbjct: 899 -RVAMNSPIQ---------GTAADIIKIAMNR---VDNRLRREGLKSKIVLQVHDELLIE 945 Query: 636 TPDTDEFNA-SMLYHLM 651 + ++L M Sbjct: 946 AKKEELKRVQTILSEEM 962 >gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] Length = 857 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 91/525 (17%), Positives = 161/525 (30%), Gaps = 135/525 (25%) Query: 165 VTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 T ++ L P + E+ L ++ + RG +D A L+ + Sbjct: 434 ALATAQLLTALRPQLDEKRAQLYKDVERPLAHVLARMEVRGVRLDSAYLRGLSDSLGARA 493 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSSNKKLT 270 +LD ++ L G S ++L++ L+ E GL T+ T +R L + Sbjct: 494 QELDARIQELA-GHPFSVNSRDQLESVLYDELGLASGKKTKLTGKRSTAVSALEPLRDEH 552 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P + R ++ P P Sbjct: 553 PIIPLLLEYREL-------------------------------TKLKGTYLDPLPNLVNP 581 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385 R H Q + +P+ I +R IA +G L+ AD + IE Sbjct: 582 LTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSETGREIRKGFIADDGFCLISADYSQIE 641 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA +A + +AF G D++ T A+ V VT +QR K + + Y A Sbjct: 642 LRLLAHIADDALMQEAFVGGADIHRRTAAQVLGVMEDLVTPNQRRAAKTVNFGVLYGMSA 701 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 ++++ G++ + +A F +P Sbjct: 702 ---HRLSNDLGIS----------------FAEASRFIERYFATYPR-------------- 728 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 R+ R+ V +Y ++ ++P Sbjct: 729 ----IREYIDATLAF-------------------GREHGYVETMYGRR------RLVPEL 759 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG 621 RS N T R+ Y +Q + DI+ M+ G Sbjct: 760 RS------------ANRTMREAGERVAY-----NMPIQGTAADIIKIAMVELDEQLSALG 802 Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + L + +PL+ E Sbjct: 803 ARLLLQVHDELLIEAPSDRADEVAALTRRVMEGVV-TLKVPLRVE 846 >gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 884 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 103/672 (15%), Positives = 206/672 (30%), Gaps = 161/672 (23%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + ++ + ++ L +A + F+R+ Sbjct: 330 FEILGDNYHVENIIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSK 384 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCK-- 135 VL + +D+P LA+ + +L ++ + + + K Sbjct: 385 VLLSHLGIDLPAP--AFDSRLAKYLLSTVDDNELSTIARLYTEYVLDSDEAVYGKGAKRA 442 Query: 136 -GETHECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190 + L + NH E D + L EQ L + Sbjct: 443 VPDKAVLLSHLARKIVVLNHSEK-------AMLDKLTEHQQASLLF---DMEQPLANVLA 492 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G V + + +L QE+ L G+ + ++L LF + L Sbjct: 493 KMEIAGISVKKETLQDMEKANQAVIDELTQEIYDLA-GMEFNINSPKQLGELLFDKMQLP 551 Query: 251 L--EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+T + ++L P + V L Sbjct: 552 TSYTKKTKTGYSTAVDVLERLAPISPIVSK----------------------------IL 583 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363 ++ ++ L + + H Q +T + DP+ I Sbjct: 584 EYRQIAKLQSTYIVGLQDFIL-KDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRL 642 Query: 364 VRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP- 421 +R + + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + Sbjct: 643 IRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKA 702 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 VT + R K + + Y +A+ G+ ++T + + Sbjct: 703 EDVTPNDRRNAKAVNFGIVYGISDY---GLANNLGIPRKVAKQYIET------YFERYPG 753 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + E A + ++ T + Sbjct: 754 IKDYMERVVRDAKDKGYVET-------------------------------------LFH 776 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 +RR++P + + R+ R R+ +N+ Sbjct: 777 RRRELPDI--------------NARNFNVRQF-AERTAINSP------------------ 803 Query: 602 VQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654 +Q + DIL M+N KA D ++L VHDEI+ E P + E ++ M S Sbjct: 804 IQGSAADILKIAMINLDKALVDGRFKTKMLLQVHDEIILEVPKDELEAIEKLVKETMESA 863 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 864 IE--LSVPLVAD 873 >gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] Length = 877 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 173/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLSQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] Length = 864 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 96/571 (16%), Positives = 173/571 (30%), Gaps = 139/571 (24%) Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 G L + L++ + G+ + ++ + E L + Sbjct: 380 GRGITLNGIAHDTALAAYLLRPGQRTYEL---PDVYQRHLRKTLEASSEQLSLLDDTGGI 436 Query: 164 D-----VTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D + +T E+ K L+ + E L + + G V+V + ++ Sbjct: 437 DSAVAIMELTVELTKALQEIDSYQLYAELEIPLVSILAKMEATGIAVNVDTLESQQEVFA 496 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272 ++ L + ++L+T LF L T+T ++L Sbjct: 497 NHVAAEEKAARELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTGYSTAAKEIEQLAIN 556 Query: 273 AIQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 F + + A R L L++ + DGR+ Sbjct: 557 HPHPFLDHLLAHREYQKLKTTLEGLIKTVQPDGRI------------------------- 591 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAG 383 H +Q + +++P+ I +RS I EG L+ AD + Sbjct: 592 ------HTTFNQTVASTGRLSSTEPNLQNIPVRTESGRTIRSAFIVGEGYETLLTADYSQ 645 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE RV+A ++ + ++A++ GEDL+ +R F+V +VT + R K M L Y Sbjct: 646 IEMRVMAHLSQDPGLIEAYKEGEDLHNYVGSRVFDVPVDKVTSELRRRVKAMSYGLVYGL 705 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A + S Sbjct: 706 SAFGLSQQLSI-----------------------------------------------PA 718 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILML 562 KK R + L EQ ++G A + +RR +P L Sbjct: 719 GEAKKTMDAYFDRFGGVKKYLADVVEQARKDGYTATVFGRRRYLP-------------EL 765 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 S L + R+ LN +Q + DI+ M+ +A Sbjct: 766 ISDNRLARENA--ERAALNAP------------------IQGTAADIIKVAMIRVDQALE 805 Query: 623 ----DIVLTVHDEIVCETPDTDEFNASMLYH 649 ++L VHDE+V E + + Sbjct: 806 GFKSRVLLQVHDELVVEVAPGELNKVQEIVE 836 >gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7] gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7] Length = 860 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 88/485 (18%), Positives = 154/485 (31%), Gaps = 74/485 (15%) Query: 40 HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 P V+ L+ LE++ + HN+ ++ VL N + + +L Sbjct: 324 GPDHAPQLPKQEVL-DRLRPWLEDSKAHKLLHNAKYDTHVL---MNEGVALAGVAEDTML 379 Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159 + K V +L+ + + C + +D Sbjct: 380 QAYVL--ESHKRV-NMQELAERWLGRIGTTYEDLCGKGAKQIGFD------EIDVDKASH 430 Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQT----------INDRGYCVDVALAHTLNQ 209 Y D T ++ + L P + L + Q I G +D L + Sbjct: 431 YACEDADFTLQLHQVLRPKVLADPGLENIYQLEVQASATLAIIERNGVAIDGKLLAAQSH 490 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSS 265 + + + + + L G + ++L LF L + +T + VL+ Sbjct: 491 ELGQKLLEFEAKAYELA-GQPFNLNSPKQLGEILFQRMQLPIVRKTPSGAPSTDEDVLTK 549 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 P + R G ++ P Sbjct: 550 LAHDYPLPALLLEYR-------------------------------GLAKLKSTYTDKLP 578 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 PR R H Q +SDP+ I VR+ +AS G ++V AD Sbjct: 579 KMINPRTGRVHTRYAQAAVITGRLASSDPNLQNIPVRTPEGRRVRAAFVASGG-QIVSAD 637 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RV+A ++ ++ +AFE G+D++ T A F A A+V+ +QR K + L Sbjct: 638 YSQIELRVMAHVSDDENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAINFGLI 697 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y G +AS G+ + + A E A E ++ Sbjct: 698 YGMGEF---GLASNLGITRDAARAYIDRYFARYP------GVAAYMEQTKRMANELGYVE 748 Query: 501 TACER 505 T R Sbjct: 749 TVFGR 753 >gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026] Length = 886 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 103/640 (16%), Positives = 206/640 (32%), Gaps = 161/640 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 L + LE+ + + L LD+ ++LA ++ Sbjct: 367 LHKMLEDKTIKKNVFDIKRTYVGLHR---LDLKAEGLDYDMLLASYLVNNENNSNDLGEV 423 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A ++ E+ + K F + + + Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAVPNDN------------EFFEHLAAKVAVIEKLKTQL 471 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 LE L EQ+ Y + + G V+ ++ + L V+ +L+ ++ Sbjct: 472 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282 G + ++L LF + GL T+T + ++L +P ++ + R Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L++ + DGR+ H Q Sbjct: 591 A-KIQNTYVKGLLDCIQPDGRI-------------------------------HTRYLQT 618 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395 +T + DP+ I +R + S +G D + +E RVLA ++G+ Sbjct: 619 LTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677 Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF++G D++ T + F++ P +VT R K + + Y ++ Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ ++ E +P Sbjct: 735 LGISRKQAKTFIEN----------------YFEQYP------------------------ 754 Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ N + +A ++ ENG A I +RR +P ++ K + RS Sbjct: 755 ----QIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 R+ +N+ +Q + DI+ M+N K +VL Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 VHDE++ + P + + +M S +PL A+ Sbjct: 838 VHDELIFDVPKDELNTIKKIVPEVMQSAVK--LDVPLIAD 875 >gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 886 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 103/640 (16%), Positives = 206/640 (32%), Gaps = 161/640 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 L++ LE+ + + L L++ ++LA ++ Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHR---LNLKAEGLDYDMLLASYLVNNENNSNDLGEV 423 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A ++ E+ + K + F + + Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAV------------PDDNEFFEHLAAKVAVIEKLKTPL 471 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 LE L EQ+ Y + + G V+ ++ + L V+ +L+ ++ Sbjct: 472 LEKLKDHEQDDLYETIEIPAAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282 G + ++L LF + GL T+T + ++L +P ++ + R Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L+E + DGR+ H Q Sbjct: 591 A-KIQNTYVKGLLECIQPDGRI-------------------------------HTRYLQT 618 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395 +T + DP+ I +R + S +G D + +E RVLA ++G+ Sbjct: 619 LTATGRLSSVDPNLQNIPTRTNEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677 Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF++G D++ T + F++ P +VT R K + + Y ++ Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ ++ E +P Sbjct: 735 LGISRKQAKTFIEN----------------YFEQYP------------------------ 754 Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ N + A ++ ENG A I +RR +P ++ K + RS Sbjct: 755 ----QIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 R+ +N+ +Q + DI+ M+N K +VL Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 VHDE++ + P + + +M S +PL A+ Sbjct: 838 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 875 >gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591] gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68] gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591] Length = 878 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 97/514 (18%), Positives = 173/514 (33%), Gaps = 135/514 (26%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++L+ L E L + + G V+ + +V +L +E+ L G + Sbjct: 469 QQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELA-GQEFN 527 Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L T LF E GL LE T+T VL + P ++ R + Sbjct: 528 INSPKQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQS 587 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L +A+ DG + H Q +T Sbjct: 588 TY-VVGLQDAILEDG-------------------------------KIHTRYVQDLTQTG 615 Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++DP+ I +R + S E L+ +D + IE RVLA ++ ++ ++A Sbjct: 616 RLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEA 675 Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F+ G D++ +T R F + VT + R K + + Y +++ G+ Sbjct: 676 FQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLSNNLGITRK 732 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T R + Sbjct: 733 EAKAYIDTYF--------------------------------------------ERFPGI 748 Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 N + + + G I ++RR++P + + R+ R+ R+ Sbjct: 749 KNYMETIVREARDKGYVETIYKRRRELPDI--------------NSRNFNVRNF-AERTA 793 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 +N+ +Q + DIL M+N KA ++L VHDEIV Sbjct: 794 INSP------------------IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + E +M+ M S S +PL A+ Sbjct: 836 LEVPVAELETVKAMVKETMESAIS--LSVPLIAD 867 >gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023] Length = 552 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 90/627 (14%), Positives = 183/627 (29%), Gaps = 149/627 (23%) Query: 64 TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEALKLSSQ 121 ++ T V +++ + + I ++LA PS A++ Sbjct: 40 SEETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHDYT 96 Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---- 177 ++E + + + K R+ P + + + LE Sbjct: 97 EVETDEAIYGKGAK---------RSTPEEDIVAAHLARKAVAIAELEKRLVDDLEKNEQL 147 Query: 178 --LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + E L ++ + +G VD + + L++ + SL G + Sbjct: 148 ALMEDLELPLTFVLAQMEMQGVSVDTQRLGNMKVELAGRLKTLEESIHSLA-GEEFNINS 206 Query: 236 LEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + L T+T T VL S ++ R Sbjct: 207 PKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL---------- 256 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 G+++ T T + + H +Q +T + Sbjct: 257 ---------GKIQSTYIEGLLKVTDKE------------THKVHTRFNQTLTQTGRLSSV 295 Query: 353 DPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 DP+ I +R + S G K+ AD + +E RVLA ++ ++ + AF+ Sbjct: 296 DPNLQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDY 355 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T F+V +V R K + + Y + G+ + Sbjct: 356 DIHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKEAKDFI 412 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + ++ A E ++ T R R+ + Sbjct: 413 DRYFVSYP------AVKEYMQDIVRFAKEKGYVETILHR-----RRYIPEIVS------- 454 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 R+ R R+ +NT Sbjct: 455 ---------------------------------------RNFNVRGF-AERTAMNTP--- 471 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTD 640 +Q + DI+ + M + + ++L VHDE++ E P+ + Sbjct: 472 ---------------IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAE 516 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAE 666 + +M + +PLK + Sbjct: 517 IAKLEEIVPDVMENAVE--LSVPLKVD 541 >gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS] gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS] Length = 929 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 111/684 (16%), Positives = 201/684 (29%), Gaps = 158/684 (23%) Query: 16 LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNS 73 L G Y D + D D DP L L + H + Sbjct: 357 LAVVGTHLAYDADATALAIVAADGDG--RYIDTTSLDPDDEAALASWLADPGPPKALHEA 414 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 + + LA P + L + + + Sbjct: 415 KL---AMHDLAGRGWKLAGVTSDTALAAYLVRPGQ-----RSFSLDDLSLRYLRRELRAD 466 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWY 187 + L D + +A + + + + + L + S E + Sbjct: 467 NPAQQQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQR 526 Query: 188 LDQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + G VD+ L ++ D+ R + + G + ++L+ LF E Sbjct: 527 VLAEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVI--GKQINLGSPKQLQAVLFDE 584 Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGR 303 + T+T + + L + F + A R A + ++ L+ ++ SDGR Sbjct: 585 LAMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGR 644 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 + T +Q I +++P+ I Sbjct: 645 IHTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRT 673 Query: 361 --SDCVRSCVIA---SEG-------KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R + G +L+ AD + IE R++A ++ + ++AF TGEDL Sbjct: 674 EAGRRIRDAFVVESRPPGSGGGAVFTELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDL 733 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +R+F+V +VT D R K M L Y A +A+ ++ Sbjct: 734 HSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAYGLSAY---GLAAQLKISTEEA------ 784 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 K Q +R + + L Sbjct: 785 --------------------------------------KVQMDQYFARFGGIRDYLRDVV 806 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +Q ++G RR LP S Sbjct: 807 DQARKDGYTSTVFGRRRY---------------LPELDSSNRN----------------V 835 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642 RE L I Q + DI+ M++ +A ++L VHDE++ E D + Sbjct: 836 REAAERAALNAPI-QGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERD 894 Query: 643 NASMLYH-LMTSNPSWAKGLPLKA 665 L M S ++A +PL+ Sbjct: 895 TLEKLVRDKMGS--AYALDVPLEV 916 >gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3] gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3] Length = 878 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 97/514 (18%), Positives = 173/514 (33%), Gaps = 135/514 (26%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++L+ L E L + + G V+ + +V +L +E+ L G + Sbjct: 469 QQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELA-GQEFN 527 Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L T LF E GL LE T+T VL + P ++ R + Sbjct: 528 INSPKQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQS 587 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L +A+ DG + H Q +T Sbjct: 588 TY-VVGLQDAILEDG-------------------------------KIHTRYVQDLTQTG 615 Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++DP+ I +R + S E L+ +D + IE RVLA ++ ++ ++A Sbjct: 616 RLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEA 675 Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F+ G D++ +T R F + VT + R K + + Y +++ G+ Sbjct: 676 FQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLSNNLGITRK 732 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T R + Sbjct: 733 EAKAYIDTYF--------------------------------------------ERFPGI 748 Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 N + + + G I ++RR++P + + R+ R+ R+ Sbjct: 749 KNYMETIVREARDKGYVETIYKRRRELPDI--------------NSRNFNVRNF-AERTA 793 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 +N+ +Q + DIL M+N KA ++L VHDEIV Sbjct: 794 INSP------------------IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + E +M+ M S S +PL A+ Sbjct: 836 LEVPVAELETVKAMVKETMESAIS--LSVPLIAD 867 >gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515] gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515] Length = 880 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 123/686 (17%), Positives = 212/686 (30%), Gaps = 160/686 (23%) Query: 9 ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 E S D G + ED L + + D ++ +L+EAL Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSDVSLLQEALFKKA 366 Query: 66 VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123 ++ F+R+ VL FN+D+P LA+ + V +L + + Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EP 177 + + + K R P + K V I ++L E Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + RG V + + L QE+ L G + + Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSPK 534 Query: 238 KLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 +L LF GL +E T+T + ++L P + V Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK----------------- 577 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 L++ ++ L + H Q +T +SDP+ Sbjct: 578 -----------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPN 625 Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D++ Sbjct: 626 LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIH 685 Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +T R F + P VT + R K + + Y G+ + T Sbjct: 686 TSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYIDT 742 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 R + N + Sbjct: 743 Y--------------------------------------------FERYPGIKNYMETVV 758 Query: 529 EQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + G + +RR +P + + R+ R R+ +N+ Sbjct: 759 REAKDKGYVETLFHRRRSLPDI--------------NSRNFNIRQF-AERTAINSP---- 799 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDE 641 +Q + DIL M+N + Y ++L VHDEIV E P+ + Sbjct: 800 --------------IQGSAADILKIAMINLDRVLYKGGYKSKMLLQVHDEIVLEVPNEEI 845 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAE 666 L M S S +PL A+ Sbjct: 846 GAIKELVTKTMESAIS--LSVPLIAD 869 >gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] Length = 924 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 92/549 (16%), Positives = 175/549 (31%), Gaps = 78/549 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKA 111 + LK LE+ V + N F+ VL F I + T++++ + Sbjct: 394 KKLKPLLEDPSVKKIGQNIKFDFIVL---FKQGIEMTSMEDTMLMSYVLDAGKNRHNMDT 450 Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + E K KE++ K +Y D +T + Sbjct: 451 LSEIH--LGHKTISFKEIVGTGKKEINFS----------DVEIERAKDYAAEDADITFRL 498 Query: 172 FKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 +K+ E+ L + + G VD TL+ + + L++E Sbjct: 499 YKKFSKNLKLEKMINIYEIFEKPLIKILAFMEMEGVEVDNKFLKTLSSKFEKKIKNLEKE 558 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + ++ + ++L ++ + + L+ + + S + L Sbjct: 559 IFKISK-KDFNIASPKQLGEIIYNDLKIAELKKTKKGSFATSASVLEDLA---------- 607 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 K + + + L + S+ P P R H Sbjct: 608 --------FKGHKFPKLV---------LDWRQVSKLKNTYSDSLPEHINPNTKRVHTSFL 650 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 T +SDP+ I +R + + L+ AD IE R+LA +A Sbjct: 651 LAATTTGRLASSDPNLQNIPIKSEDGRDIRKAFTSRKNHLLISADYNQIEMRILADLADV 710 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + KAF+ ED++ T ++ FNV +V +DQR K + + Y K + + Sbjct: 711 KELKKAFKNDEDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYGISQYGLAKQINVS 770 Query: 456 GLNLNTF--AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 F A+ K D FCR + ++ R + + Sbjct: 771 NYEAEEFLDAYFAKFPEIKIYMNDTIKFCR-----------KSGYVNNIFGR-RSHFNGI 818 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL--ILMLPSGRSLVYR 571 + + + N +A G A + + L DK N+ ++L L++ Sbjct: 819 NDKNFNVRNFQERAAINAPIQGSASEIMRLAMIRLNKKLSDKKNIQSKMLLQIHDELIFE 878 Query: 572 DVGNNRSYL 580 NN + Sbjct: 879 VPKNNEKTM 887 >gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] Length = 909 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 108/650 (16%), Positives = 197/650 (30%), Gaps = 144/650 (22%) Query: 39 DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D D DP + L L + D H + + + Sbjct: 368 DGDGRYIDTTRLDPEDEKALASWLADPDAPKALHEAKL---AMHDLQGRGWTLAGVTSDT 424 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 LA P + L + K + + L D + +A + Sbjct: 425 ALAAYLVRPGQ-----RSFALDDLSLRYLKRELRADNPEQQQLSLLDDSDAVDDQAVQTL 479 Query: 158 GEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211 V + + + L + S E + + + G VD+A+ L Sbjct: 480 LLRAGAVVDLADALDEELARIDSSALLGSMELPVQRVLAQLETVGIAVDLAMLSELQSEF 539 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + ++ G + ++L+ LF E + T+T + + L Sbjct: 540 AGQIRDAAEAAYAVI-GKQINLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLFD 598 Query: 272 QAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + F + A R A + ++ L+ ++ +DGR+ T Sbjct: 599 KTGHPFLQHLLAHRDATRLKVTVDGLLNSVAADGRIHTT--------------------- 637 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLA 382 +Q I +++P+ I +R + EG L+ AD + Sbjct: 638 ----------FNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDGFVVGEGYADLMTADYS 687 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++ + ++AF TGEDL+ +R+F+V +VT + R K M L Y Sbjct: 688 QIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYGLAYG 747 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 A + + Sbjct: 748 LSAYGLSQQLKIS----------------------------------------------- 760 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 E K+ Q +R + + L +Q ++G RR L Sbjct: 761 TEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRY---------------L 805 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 P S + + RE L I Q + DI+ M+N +A Sbjct: 806 PELDS----------------SNRQVREAAERAALNAPI-QGSAADIIKVAMINVDQAIK 848 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 ++L VHDE++ E D + L M S ++ +PL+ Sbjct: 849 EAGLSSRMLLQVHDELLFEVADGERDALDALVREHMGS--AYRLDVPLEV 896 >gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2] gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2] Length = 878 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 99/605 (16%), Positives = 186/605 (30%), Gaps = 139/605 (22%) Query: 82 ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 A + + L+L P +L A + + + KG + Sbjct: 382 AFLRFGVELRGVDFDLMLGAYIVNP-SLTYTDMASIVQEYGHNDVSTNEQIYGKGAKKKV 440 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 D H + + E ++ + E L + + G V+ Sbjct: 441 PEDAILHEHIARKARTIWKVRPLIMAKLEDNEQFDLYDKLELPLATVLGQMESLGVMVNR 500 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---T 258 + + + + K++ ++ L G + ++L LF + GL T+T T Sbjct: 501 DQLVEMGKELAHKLEKIESDIHGLA-GQEFNINSPKQLGVILFEKLGLPALKKTKTGYST 559 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + + R + + L++ ++ DG++ Q Sbjct: 560 AADVLEKLEGQHEIISHILMYRQLGKLLSTY-IEGLLKEIHEDGKIHTRFQ--------- 609 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE- 372 Q +T + +P+ I +R + SE Sbjct: 610 ----------------------QALTTTGRLSSINPNLQNIPVRLEEGRKIRKAFVPSEP 647 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 G +V AD + IE RVLA M+ ++ ++AF+ D++ TT + F+V +VT D R Sbjct: 648 GWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTASDVFHVTEEEVTSDMRRAA 707 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y + + A + E + + + N Sbjct: 708 KAVNFGIVYGISDYGLSQ---NLNIPRKEAAAFI------ERYFASFPGVKSYMTNIVAD 758 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552 A D F+ T + +RR +P + Sbjct: 759 AKRDGFVTT-------------------------------------LMNRRRYLPDITSS 781 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 + RS R+ +NT +Q + DI+ + Sbjct: 782 NF---------NLRSFA------ERTAMNTP------------------IQGSAADIIKK 808 Query: 613 GMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAK-----GL 661 M++ A ++L VHDE++ E P L HLM P + + Sbjct: 809 AMIDMDAAIEREGLQARMLLQVHDELIFEAPP------EELDHLMKLVPEVMENAVKLSV 862 Query: 662 PLKAE 666 PLK + Sbjct: 863 PLKVD 867 >gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52] gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52] Length = 876 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + G VD + + + + ++Q + L G + + Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLGTVEQRIYELA-GQEFNINSPK 532 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF + L + T+T +KL P + +VE Sbjct: 533 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 572 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 L + + P + H +Q +T +++P+ Sbjct: 573 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 624 Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + SE + AD + IE RVLA +A + ++AF D++ Sbjct: 625 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 684 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F V+ +VT + R K + + Y +A ++ A + Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 736 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + ++ + EN + A + ++ T Sbjct: 737 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 767 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +RR +P + R+ R R +NT Sbjct: 768 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 795 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M++ + ++L VHDE++ E P + Sbjct: 796 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 845 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 L +M + +PLK + Sbjct: 846 RLVPEVMEQAVT--LRVPLKVD 865 >gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1] gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1] Length = 875 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 93/638 (14%), Positives = 197/638 (30%), Gaps = 148/638 (23%) Query: 57 LKEALENTDVTIVA---------HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107 L+ AL + A +++ L+ + + L++ P+ Sbjct: 347 LETALASDAFKKWAADEKMKKSVYDAKRSIVALRRQ---GVELTGVEFDLLIVSYILNPA 403 Query: 108 --ALKAVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGD 164 A G A K + +E + + + K E + C+ Sbjct: 404 ESADDFAGVAKKHGASVIESDEAVYGKGAKRKVPEEEKLAEHLARKANVVYELKSTCEE- 462 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + ++ + E L + + G VDV + + ++++++ Sbjct: 463 ALKENDQYQLF---TDLELPLAIILADMEYTGVGVDVDRLKEMKSELAERLDEMEKKIYE 519 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF + L + T+T VL + + + R Sbjct: 520 LA-GEEFNINSPKQLGVILFEKLELPVIKKTKTGYSTSADVLEKLQSKHEIIDHILHYRQ 578 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D ++ H +Q Sbjct: 579 L-GKLQSTYIEGLLKVIHED------------------------------SNKVHTRFNQ 607 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 +T ++DP+ I +R I SE + AD + IE RVLA +AG+ Sbjct: 608 ALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSEKNWLMFAADYSQIELRVLAHIAGD 667 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF G D++ T F+V VT + R K + + Y + + Sbjct: 668 EKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAVNFGIVYGISDFGLSQ---SL 724 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ ++ + D+ + ++ A ++ F+ T +R R+ Sbjct: 725 GITRKEAGEFIQ------RYLDSYPGVQEYMDDIISEAKQNGFVKTLLQR-----RRYIP 773 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ R+ R Sbjct: 774 EITS----------------------------------------------RNFNLRSF-A 786 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 R+ +NT +Q + DI+ + M++ ++L VH Sbjct: 787 ERTAMNTP------------------IQGSAADIIKKAMIDMAARLEKENLQTRLLLQVH 828 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P+ + + +M + +PLK + Sbjct: 829 DELIFEAPEDEIERLKEIVPEVMENAVE--LEVPLKVD 864 >gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] Length = 912 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 105/657 (15%), Positives = 184/657 (28%), Gaps = 158/657 (24%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86 + A D D L + L + D V H L A + Sbjct: 357 ELTGIALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQKVVHEVK---GPLLAVWAR 413 Query: 87 DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + + LA LP + A++ +++++ E + D Sbjct: 414 GWDLAGVVSDTALAAYLALPGQRSFDLADLAVRYLRRELKDSAA--------EETQLTLD 465 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREI---FKRLEPLSSK----------EQELWYLDQT 191 P+ + L E DV + L+ L + E L ++ Sbjct: 466 GMGPSEED---LAREAAHADVLKAVAVNDLSDALDSLLGQRGGDALLGGIELPLTFVLAR 522 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + RG D+ H L + E ++ G + ++L+ LF E GL Sbjct: 523 MEQRGIAADLDFLHELQREFADGVAAAAAEAYAVI-GREVNLGSPKQLQAVLFDELGLPK 581 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 ++ + L Q F + R RLR + L Sbjct: 582 TKKIKSGYTTDAEALTNLLAQTGHPFLEHLLRHRDVT--------------RLRTVIDGL 627 Query: 312 GASRTGRWSGCVFPPQNLPR---PSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363 +P R H Q I + DP+ I Sbjct: 628 -----------------IPMVDDGGRIHTTFQQTIAATGRLSSIDPNLQNIPIRTAEGRR 670 Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R + G + L+ AD + IE R++A ++G+ ++AF +GEDL+ +R++++ Sbjct: 671 IRQAFVVGSGHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIE 730 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 V + R K M L Y A +A +++ Sbjct: 731 DVDPEMRRRIKAMSYGLAYGLSAY---GLAGQLRISVEEA-------------------- 767 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 ++ R + L + + G Sbjct: 768 ------------------------REQMHAYFERFGGIREYLDGVVDDARQTGYTETTLG 803 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR LP T+ R+ L I Sbjct: 804 RRRY---------------LPDL----------------TSDNGQRRQMAERMALNAPI- 831 Query: 603 QAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYHL-MT 652 Q + D++ M+ +A D ++L VHDE+V E + L M Sbjct: 832 QGSAADVIKVAMLRVEQAIADEGLRSRMLLQVHDELVLEVAPGEREALETLVRREMA 888 >gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317] Length = 877 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 176/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLT 270 + KL QE+ L G + ++L LF + GL LE T+T + ++L Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 271 PQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P A+ ++ + R A + + L + + +DG++ Sbjct: 567 PIALIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00] gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia intracellularis PHE/MN1-00] Length = 868 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 87/496 (17%), Positives = 156/496 (31%), Gaps = 128/496 (25%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + LE + S E L + + G +D V L + + G + Sbjct: 458 QLLELMDSLELPLIPVLADMEAVGVVLDDQNLKIFLVEVQNSLDHLTETIYHEAGGS-FN 516 Query: 233 SRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 R ++L LF + L T +T Q VL P + R + Sbjct: 517 IRSAQQLGDILFNQLELPAAKKTRGGQASTSQEVLEKLSGQHPIIDTILEYRKLEKLRST 576 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 P+ + + R H +Q+ T Sbjct: 577 YL--------------------------------EPLPRLIGKDGRVHTTFNQLATATGR 604 Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +S+P+ I + +RSC AS+G L+ AD + +E RVLA + + L AF Sbjct: 605 LSSSNPNLQNIPIRGSLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTAFL 664 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ T + + + +VT D+R K + L Y G QK+A LN Sbjct: 665 EGADIHTRTASLLYEKSQEEVTADERRNAKTINFGLIYGMGP---QKLAQELNTTLNEAK 721 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + + + + + + +++ Sbjct: 722 KFI-----------------------------------------QRYFEHLQAIKKFYDQ 740 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + + ++ IA +RR +P ++ N Sbjct: 741 VEHSAKEY--GYVTTIAGRRRLLPDIHS----------------------------ENIQ 770 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP 637 + L R + I+Q + DI+ M+ K ++L VHDE+V E P Sbjct: 771 LQALARR-----QAINTIIQGSAADIIKIAMLTVHGDTTLAKMDAQLILQVHDELVVEAP 825 Query: 638 DTDEFNA-SMLYHLMT 652 + + + LM+ Sbjct: 826 EDNAKEVGKRIAMLMS 841 >gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)] Length = 876 Score = 236 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + G VD + + + + ++Q + L G + + Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 532 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF + L + T+T +KL P + +VE Sbjct: 533 QLGVILFEKLQLPILKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 572 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 L + + P + H +Q +T +++P+ Sbjct: 573 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 624 Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + SE + AD + IE RVLA +A + ++AF D++ Sbjct: 625 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 684 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F V+ +VT + R K + + Y +A ++ A + Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 736 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + ++ + EN + A + ++ T Sbjct: 737 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 767 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +RR +P + R+ R R +NT Sbjct: 768 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 795 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M++ + ++L VHDE++ E P + Sbjct: 796 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 845 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 L +M + +PLK + Sbjct: 846 RLVPEVMEQAVT--LRVPLKVD 865 >gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1] gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1] Length = 1027 Score = 236 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 101/621 (16%), Positives = 182/621 (29%), Gaps = 91/621 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------Q 55 L ID ET S +A ++ + + P + Sbjct: 449 LAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVIE 498 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113 +L++ LE++ + V HN F+ VL+ + + + ++A Sbjct: 499 ILRDVLESSAIEKVGHNLKFDVIVLR---SAGVQLGGITMDTMVADYLLNSGGRNHGLDD 555 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + K+LI K T + + Y DV V + Sbjct: 556 LAQRRLDHTNLSIKDLIGTGKKQITMDQVPV----------DDVSPYACEDVDVPIRLAP 605 Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L E L + + G V+ +++ D + L + Sbjct: 606 TLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALVF 665 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 S G + ++L LF E GL + T+T VLS A V Sbjct: 666 S-AAGHEFNLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVL--- 721 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 Q+ A++ P + R H Sbjct: 722 ----------------------------QYRQATKLKNTYIDALPQLICDKTGRVHTSFR 753 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394 Q + +S+P+ I +R+ A EG L+ AD + IE RVLA +G Sbjct: 754 QDVAATGRLSSSEPNLQNIPIRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSG 813 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + A+ D++ A + ++VT D R I K + + Y +A T Sbjct: 814 DEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPF---GLAKT 870 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQK 513 G++ + ++ + + E F +G E + + + Sbjct: 871 LGISNDEARDYIE--LYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKL 928 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRD 572 E + G A K + + K + L+L L+ Sbjct: 929 PESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLES 988 Query: 573 VGNNRSYLNTTTRQLTREYTY 593 L+ T R+ Sbjct: 989 PDEELDALSDTIREAMTSVME 1009 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 34/276 (12%) Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG-LNLNTFAHLVKT 468 T S + Q + GK + A + G + + + + + L AH Sbjct: 757 AATGRLSSSEPNLQNIPIRTEQGKAIRAA--FTAGREGWSLLGADYSQIELRVLAHYSGD 814 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + D + + + IE+ + + R+ K ++ + Sbjct: 815 EALIGAYHDDADIHTRVAAEV--NGIEESEVTSDLRRIAKTI-----NFGIVYGQSPFGL 867 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKN---NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 +T+ I + RD +Y ++ ++ L R+ Y R R Sbjct: 868 AKTLG----ISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVR 923 Query: 586 QL-------TREYTYGGKLTENI-VQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 L R T ++ N+ +Q + D++ M+ ++L +HDE Sbjct: 924 DLAKLPESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDE 983 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ E+PD + + + + MTS +PLK + Sbjct: 984 LLLESPDEELDALSDTIREAMTSVME--LDVPLKVD 1017 >gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6] gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6] Length = 877 Score = 236 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 101/534 (18%), Positives = 172/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKSYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321] gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321] Length = 877 Score = 236 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 98/551 (17%), Positives = 172/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + + + ++L L EQ L ++ + Sbjct: 431 GVKKAIPEREKFLEHLARKLAVLIETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + ++ KL QE+ L G + ++L LF + GL LE Sbjct: 491 GITVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLGLPLEYTK 549 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 638 KAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKTYIDTYF------------- 741 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELTEMKKLVKQTMEEAI 857 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 858 Q--LSVPLIAD 866 >gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax] Length = 877 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 78/505 (15%), Positives = 157/505 (31%), Gaps = 128/505 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + G VD + + + + ++Q + L G + + Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 532 Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF + L + ++T VL + + + + + L Sbjct: 533 QLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAPYHEIVENILQHYRQLGKLQSTYIEGL 592 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ + D + H +Q +T +++P Sbjct: 593 LKVVRPD------------------------------TKKVHTIFNQALTQTGRLSSTEP 622 Query: 355 DPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R + SE + AD + IE RVLA +A + ++AF D+ Sbjct: 623 NLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDI 682 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T F V+ +VT + R K + + Y +A ++ A + Sbjct: 683 HTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI-- 737 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 E + ++ + EN + A + ++ T Sbjct: 738 ----ERYFESFPGVKRYMENIVQEAKQKGYVTTLL------------------------- 768 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +RR +P + R+ R R +NT Sbjct: 769 ------------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP----- 796 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEF 642 +Q + DI+ + M++ + ++L VHDE++ E P + Sbjct: 797 -------------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEME 843 Query: 643 NASMLY-HLMTSNPSWAKGLPLKAE 666 L +M + +PLK + Sbjct: 844 RLCRLVPEVMEQAVT--LRVPLKVD 866 >gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K] gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K] Length = 897 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 91/490 (18%), Positives = 153/490 (31%), Gaps = 122/490 (24%) Query: 173 KRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 +RL PL E+ L + + G VD ++ L+ + + G Sbjct: 490 ERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHA-AAGHPF 548 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + +L LF+E L + +T +KL Q Sbjct: 549 NVASTRELAQVLFVELELPVVKRLKTGPSTDQDVLEKLAEQHALP--------------- 593 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 R L+ S+ P P R H Q + Sbjct: 594 -------------RLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSS 640 Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 SDP+ I +S +R +A G +L+ AD + IE R+LA + + L+AF E Sbjct: 641 SDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRE 700 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T A +F VAP QVT DQR I KV+ + Y A + L + ++ Sbjct: 701 DVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQ---RLDLPPSEAQGII 757 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 R + + + Sbjct: 758 DRYFT--------------------------------------------RYAGVRRYIEW 773 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A E+ G++ + + R +P + P+ R+ R+ +NT Sbjct: 774 AVEEARAKGESRTLFGRARAMPEIGAPN---------PALRNAA------ERTAINTP-- 816 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ + ++L VHDE+V E P+ Sbjct: 817 ----------------IQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPER 860 Query: 640 DEFNASMLYH 649 + L Sbjct: 861 ELEPVEALVR 870 >gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] Length = 896 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 105/596 (17%), Positives = 204/596 (34%), Gaps = 102/596 (17%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-QVLK 58 D ET S +D+ + ++ F+F ++++ H + + K Sbjct: 331 SFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAK 380 Query: 59 EALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 A+ + V N ++ ++K N DI + + T++L+ + + K Sbjct: 381 NAIIQLNRYKLVLQNFKYDYEIIKN--NFDIELRLYADTMILSWLLNTNEKVGLDYQIDK 438 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--- 174 KM +++ KGE + EY D +T +FK+ Sbjct: 439 YFDHKMISFTDVVK---KGENFSNV----------DIERACEYAAEDALMTLRLFKKQLE 485 Query: 175 ----------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L E + Y+ + G VDV L ++ + +L ++ Sbjct: 486 IFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQ 545 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 T G + ++L LF GL T+T VL+ + R Sbjct: 546 -TSGAEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYR- 603 Query: 282 RASRSAVLKLNTLVE--AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 A + + L+E + + D R+ + G Sbjct: 604 EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTG--------------------------- 636 Query: 340 DQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 T + +P+ I + +R I +G KLV D + IE R+LA + Sbjct: 637 ----TATGRLSSKNPNLQNIPTKSDSNIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQ 692 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ ++AFE D++ T + F + K++R I K + L Y G+ +K+ T Sbjct: 693 DKALVEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGS---KKLGET 746 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + + +A + ++ + A + ++ T R K + Sbjct: 747 LGIPSKEAKQYIDS------YFEAFKSVKDYLKSIEDFANINGYVKTLLNR--KRLFDFN 798 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 S + + + T+ G A K + + KD N+ L+L LV+ Sbjct: 799 SANAMMKAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVF 854 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 10/71 (14%) Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNA 644 + Y + + Q + D++ M+N ++L +HDE+V E DEF Sbjct: 805 KAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVFEV--KDEFVE 862 Query: 645 SM---LYHLMT 652 + + ++M Sbjct: 863 EITFSIKNIME 873 >gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus] Length = 878 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + G VD + + + + ++Q + L G + + Sbjct: 476 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 534 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF + L + T+T +KL P + +VE Sbjct: 535 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 574 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 L + + P + H +Q +T +++P+ Sbjct: 575 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 626 Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + SE + AD + IE RVLA +A + ++AF D++ Sbjct: 627 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 686 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F V+ +VT + R K + + Y +A ++ A + Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 738 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + ++ + EN + A + ++ T Sbjct: 739 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 769 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +RR +P + R+ R R +NT Sbjct: 770 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 797 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M++ + ++L VHDE++ E P + Sbjct: 798 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 847 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 L +M + +PLK + Sbjct: 848 RLVPEVMEQAVT--LRVPLKVD 867 >gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150] gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150] Length = 879 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 112/670 (16%), Positives = 212/670 (31%), Gaps = 157/670 (23%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + +++ ++ + + V I F+R+ Sbjct: 325 FEILGDNYHTEPIIGFAWGNDK-QIYASTDTDLLKSDAFQTALSKAVNIY----DFKRSK 379 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 VL + +D+P LA+ + +L + E E++ Sbjct: 380 VLLSHLGIDLPTAN--FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVV-------- 429 Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTI 192 + R P + K + ++L L E L + + Sbjct: 430 YGKGAKRAVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHSQSELLFDMELPLANVLAKM 489 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G V + + V KL QE+ + G + ++L LF + L LE Sbjct: 490 EIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMA-GEEFNINSPKQLGVILFEKMELPLE 548 Query: 253 --DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T + ++L P A V L++ Sbjct: 549 YTKKTKTGYSTAVDVLERLAPIAPIVAK----------------------------ILEY 580 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 ++ L + H Q +T + DP+ I +R Sbjct: 581 RQITKLQSTYVLGLQDYIL-EDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 639 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + S E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P Sbjct: 640 KAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPED 699 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T + + + Sbjct: 700 VTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKAKEYINT------YFERYPGIK 750 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 EN A + ++ T +R Sbjct: 751 AYMENVVREAKDKGYVETLF-------------------------------------HRR 773 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R++P + + R+ R+ R+ +N+ +Q Sbjct: 774 RELPDI--------------NSRNFNVRNF-AERTAINSP------------------IQ 800 Query: 604 AVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656 + DIL M+N KA GY ++L VHDEIV E P+ + L M + Sbjct: 801 GSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMKALVKETMEAAVE 860 Query: 657 WAKGLPLKAE 666 A +PL A+ Sbjct: 861 LA--VPLIAD 868 >gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 105/665 (15%), Positives = 196/665 (29%), Gaps = 171/665 (25%) Query: 38 DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 DD +L D L LE +AHN+ F+ L I + Sbjct: 379 DDGTKDLLD---------ELSPLLE-GGPKKIAHNAKFDYMALYKH---GIRVSPLYFDT 425 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRL 156 +A +++ A +M LI + +N+ E Sbjct: 426 SIAAFLLNETSVGLKDLAATRLGIQMTTIDSLIGKG-----------KNQKTMLEVSVDE 474 Query: 157 FGEYCKGDVTVTREIFKRLEP--LSSKEQELWY--------LDQTINDRGYCVDVALAHT 206 Y D +T +F LE + K Q+L+Y + + G +D + Sbjct: 475 CARYACADADMTFRLFTMLEKEIVERKLQDLFYTLEMPLVPVLADMEMTGVAIDADALKS 534 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV---L 263 L+ + + ++ ++ + G + + ++L +LF + GL T L Sbjct: 535 LSTKLYEQIRDIESQIYEIA-GYEFNLKSPQQLSKFLFQDLGLKGIRKTSKGYSTDAATL 593 Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 + P + + R ++ Sbjct: 594 EALSGQHPVIDLILSYRQL-------------------------------TKLKDTYVDA 622 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIAS------- 371 P R H Q +SDP+ I + VR +A Sbjct: 623 LPLMVSRSTGRLHTNFSQTSAVTGRLASSDPNLQNIPIRSSLGKEVRKAFVAGSPEKNNA 682 Query: 372 ---EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 E L+ AD + IE RVLA + E +AF D++ T +R F V V + Sbjct: 683 IFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAFSRDIDIHALTASRLFGVPIESVDDNM 742 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R +GK + + Y ++A TGL Sbjct: 743 RRMGKTINFGIIYGMSGF---RLARDTGLEQREA-------------------------- 773 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 K + + RV + +L + E+ + +RR +P Sbjct: 774 ---------------NLFVKRYMDQFPRVKAYFEQLIKEAEK--KGYVETPLGRRRYLPD 816 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + + +Q ++ D Sbjct: 817 ITSSNPQRREAARRAA---------------------------------INMPIQGMAAD 843 Query: 609 ILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL 661 I+ + M++ A ++L VHDE++ E ++ + A ++ M++ + L Sbjct: 844 IIKQAMIDVHSALEREGIKAKMILQVHDELLFEVAESQLDRAAEVIVREMSTAFDLSVPL 903 Query: 662 PLKAE 666 ++AE Sbjct: 904 VVEAE 908 >gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3] gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3] Length = 876 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + G VD + + + + ++Q + L G + + Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 532 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF + L + T+T +KL P + +VE Sbjct: 533 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 572 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 L + + P + H +Q +T +++P+ Sbjct: 573 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 624 Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + SE + AD + IE RVLA +A + ++AF D++ Sbjct: 625 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 684 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F V+ +VT + R K + + Y +A ++ A + Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 736 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + ++ + EN + A + ++ T Sbjct: 737 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 767 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +RR +P + R+ R R +NT Sbjct: 768 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 795 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M++ + ++L VHDE++ E P + Sbjct: 796 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 845 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 L +M + +PLK + Sbjct: 846 RLVPEVMEQAVT--LRVPLKVD 865 >gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545] Length = 877 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 101/534 (18%), Positives = 172/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKSYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus] Length = 878 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 82/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + G VD + + + + ++Q + L G + + Sbjct: 476 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 534 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF + L + T+T +KL P + +VE Sbjct: 535 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAP-------------------YHEIVE- 574 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 L + + P + H +Q +T +++P+ Sbjct: 575 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 626 Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + SE + AD + IE RVLA +A + ++AF D++ Sbjct: 627 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 686 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F V+ +VT + R K + + Y +A ++ A + Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 738 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + ++ + EN + A + ++ T Sbjct: 739 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 769 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +RR +P + R+ R R +NT Sbjct: 770 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 797 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M++ + ++L VHDE++ E P + Sbjct: 798 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 847 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 L +M + +PLK + Sbjct: 848 RLVPEVMEQAVT--LRVPLKVD 867 >gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] Length = 881 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 114/665 (17%), Positives = 214/665 (32%), Gaps = 160/665 (24%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFER-TVLKACFNLD 87 +I FA+G +L+ ++ + KE LE T + + F+R VL + + Sbjct: 338 IIGFAWGTKG---QLYASTDTGLLQTPIFKEFLEKTPLKVY----DFKRAKVLLSHLGIT 390 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + LA+ + L SQ E++ + R Sbjct: 391 L--QNPAFDSRLAKYLLSTVEDNEISTIASLYSQIALPLDEVV--------YGKGVKRAI 440 Query: 148 PNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 P + + +L+ L EQ L + + G V+ Sbjct: 441 PERAVLLEHLALKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIAGIKVER 500 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTC 259 + +V +L QE+ L G + ++L LF + L LE T+T Sbjct: 501 QTLEDMQVENEVVLERLTQEIYELA-GEEFNINSPKQLGVILFEKLELPLEYTKKTKTGY 559 Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 VL + P ++ R A + + L + + DG++ Sbjct: 560 STAVDVLERLAPIAPIVSKILEYRQIAKIQSTY-VIGLQDWILEDGKI------------ 606 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 H Q +T + DP+ I +R + Sbjct: 607 -------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPE 647 Query: 372 E-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429 E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P VT + R Sbjct: 648 EENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDR 707 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +++ G++ ++T Sbjct: 708 RNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIETYF------------------- 745 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPL 548 R + + + + + + G + ++RR++P Sbjct: 746 -------------------------ERYPGIKDYMERVVREARDKGYVETLFKRRREIPD 780 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + R+ R R+ +N+ +Q + D Sbjct: 781 I--------------NSRNFNVRGF-AERTAINSP------------------IQGSAAD 807 Query: 609 ILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661 IL M++ +A ++L VHDEIV + P + L M S A + Sbjct: 808 ILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESAIELA--V 865 Query: 662 PLKAE 666 PL+A+ Sbjct: 866 PLEAD 870 >gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] Length = 850 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 89/527 (16%), Positives = 162/527 (30%), Gaps = 138/527 (26%) Query: 165 VTVTREIFKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 V + + ++ L L ++ E+ L + + G+ VD + ++ + Sbjct: 426 VILLKRLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESK 485 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTP 271 L++++ + G + ++L LF + L + T+T VL Sbjct: 486 ILNLEKQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + RM +G LQ P Sbjct: 545 IVPLILDYRMYTKILTTY--------------CQGLLQA-----------------INPS 573 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q T +SDP+ I +R I EG L+ AD + IE Sbjct: 574 SGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIEL 633 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA ++ ++ + AF+ D++ T A F V VT + R+ K + + Y Sbjct: 634 RILAHISEDERLINAFKNNVDIHSQTAAEVFGVDIDDVTPEMRSQAKAVNFGIVYGISDY 693 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +A ++ A + N E + + + + Sbjct: 694 ---GLARDIKISRKEAAEFI--NRYFERYPK---------------------VKEYLDNI 727 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K R + V L+N +RR V + Sbjct: 728 VKFARD-NGYVLTLFN-------------------RRRYVKDIKSA-------------- 753 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----- 621 NR+ N R +Q + DI+ M+ + Sbjct: 754 ---------NRNARNY----AERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNL 794 Query: 622 -YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 I+L VHDE++ E P + + ++ M + A +PL E Sbjct: 795 KSKIILQVHDELLIEAPYEEKDIVKEIVKREMENAV--ALKVPLVVE 839 >gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716] Length = 886 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 110/664 (16%), Positives = 198/664 (29%), Gaps = 144/664 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y E L F D L D + LK+ LE+ V N+ + L Sbjct: 334 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 389 Query: 84 FNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + + L+LA S L + A + +E E+ + K Sbjct: 390 --LGVDLAGVNFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDE--EVYGKGAK--RA 443 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 D H K + ++L E+ L + + G V Sbjct: 444 IPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHV 503 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D A + + +L+Q + G + ++L LF + L + T+T Sbjct: 504 DAATLKEMGSKLVEREAELEQAIYQEA-GEEFNINSPKQLGVILFEKMKLPVIKKTKTGY 562 Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 VL P + R S+ + L++ ++ D Sbjct: 563 STAVDVLEKLADRAPIVQDILAYRQ-ISKLQSTYITGLLKVIHQDD-------------- 607 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 + H Q +T + DP+ I +R S Sbjct: 608 ----------------QKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPS 651 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQR 429 G K+ +D + +E RVLA + G++ F G+D++ T R F++ + +VT + R Sbjct: 652 APGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMR 711 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ +++ + + Sbjct: 712 RQAKAVNFGIVYGISDY---GLAQNIHVSRPQAHEFIQS------YFKEFPGVEKYVHDI 762 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 E A + ++ + +RR +P + Sbjct: 763 VELAKQQGYVE-------------------------------------TLTHRRRYLPEI 785 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + K RS R +NT +Q + DI Sbjct: 786 HAKSFTQ---------RSFA------ERMAMNTP------------------IQGSAADI 812 Query: 610 LAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + M+ KA ++L +HDE+V E P+ + L +M S +P Sbjct: 813 IKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPSIMDSAVK--LDVP 870 Query: 663 LKAE 666 LK E Sbjct: 871 LKVE 874 >gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836] gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836] Length = 901 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 96/513 (18%), Positives = 155/513 (30%), Gaps = 122/513 (23%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L+ E L + + G VD L + + Sbjct: 485 DAELAKQAGTALLADVELPLIDVIAAMERDGIAVDRPYLEKLEERFATGVRDAATSAYEV 544 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L+ LF E + T+T S + L + F + A R Sbjct: 545 I-GKEINLGSPKQLQVVLFDELQMPKTKRTKTGYTTDADSLQALFEKTEHPFLAYLLAHR 603 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 A RLR T++ G +T PR +R H +Q I Sbjct: 604 DAT--------------RLRQTVE--GLLKTIS-----------PRDARIHTTFNQTIAA 636 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R + EG + L+ AD + IE R++A ++ ++ + Sbjct: 637 TGRLSSTDPNLQNIPIRTEEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLI 696 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF +GED + T AR F+V P +VT++ RA K M L Y A + Sbjct: 697 DAFNSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAYGLSAYGLSQQLKI----- 751 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + R Sbjct: 752 ------------------------------------------GVDEAKGLMDEYFERFGG 769 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + L + ++G RR LP Sbjct: 770 VRDYLRSIVIEAGKSGYTETILGRRRY---------------LP---------------D 799 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633 L + RQ RE L I Q + D++ M+ + ++L VHDE+V Sbjct: 800 LTSDNRQ-RREMAERMALNAPI-QGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELV 857 Query: 634 CETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 E + L M S A +PL Sbjct: 858 FEIAPGEREALEELVRRDMGSAVEMA--VPLDV 888 >gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22] Length = 908 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 182/617 (29%), Gaps = 147/617 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + V HN+ + ++ + LA P +AL L Sbjct: 394 LADPARPKVFHNAK---SAMRVFAEHGWTVEGVGMDTALAAYLVKPGRRSFDLDALTL-- 448 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLEPLS 179 + L T + EA L D+ +RLE + Sbjct: 449 ------EYLGRELAPAATADGQLAFGADEGAEADALMVQARAILDLGAAFG--ERLEEVG 500 Query: 180 SK------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + E L + G D + Q+ + +E + G + Sbjct: 501 AAGLLRDVELPTSALLARMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHA-AAGHEFNL 559 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLK 290 ++L+ LF E GL T+T + L Q + V R R + Sbjct: 560 GSPKQLQEVLFGELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT 619 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ + +DGR+ H Q + Sbjct: 620 VEGLIKTIAADGRI-------------------------------HTSFSQTVAATGRLS 648 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ + +R + EG + L+ AD + IE RV+A ++ ++ ++AF + Sbjct: 649 STDPNLQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTS 708 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ T A+ F V + V + R K M L Y A + + Sbjct: 709 GEDLHTTAAAQVFGVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAGEARA 765 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 L+ R + + L Sbjct: 766 LID--------------------------------------------AYFERFGGVRDYL 781 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + ++ E G RR LP LN+ Sbjct: 782 RRVVDEARETGYTATLFGRRRY---------------LP---------------DLNSDN 811 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE-TP 637 RQ RE L I Q + DI+ M+N +A ++L VHDEIV E P Sbjct: 812 RQ-RREAAERMALNAPI-QGTAADIVKIAMLNVGRALDEAGLASRMLLQVHDEIVLEIAP 869 Query: 638 DTDEFNASMLYHLMTSN 654 + +L H M Sbjct: 870 GERDRTEQLLRHEMADA 886 >gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032] gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032] Length = 879 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 95/633 (15%), Positives = 199/633 (31%), Gaps = 143/633 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALK 110 + KE +++ +S R V+ ++ D+ + ++LA P + Sbjct: 358 EAFKEWVQDETKKKWVFDSK--RAVVALRWH-DVDLKGVDNDVLLASYVVNPQKTYEDVA 414 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT-R 169 +V + L+ +E + KG + H + D+T+ Sbjct: 415 SVAKEYGLNIALSDE-----KVYGKGAKQAIPPEDELKEHLGR-KAAAISALHDLTLEAL 468 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + E E L + + G VD+ + + + + + ++ + L G Sbjct: 469 EKNDQHELYEDLELPLALILGEMESLGVKVDIKRLENMGEELTKKLKEYEETIHRLA-GE 527 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF + GL + T+T VL + + + R + Sbjct: 528 TFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSADVLEKLEDKHEIIRSILHYRQ-IGKL 586 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + L++ D + H +Q +T Sbjct: 587 QSTYVEGLMKVTRKD------------------------------THKVHTRFNQALTQT 616 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++DP+ I +R + S EG + AD + IE RVLA ++ ++ ++ Sbjct: 617 GRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELRVLAHISQDENLIE 676 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF D++ T F+V+ +VT R K + + Y + G+ Sbjct: 677 AFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 733 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + E + + + E + A + ++ T Sbjct: 734 EAAAFI------ERYLTSFKGVKTYMEEIVQEAKQKGYVTTLL----------------- 770 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++RR +P + + R+ + Sbjct: 771 --------------------KRRRYIPDITSRNFN---------------IKSFAERTAM 795 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 NT +Q + DI+ + M++ K +++L VHDE++ Sbjct: 796 NTP------------------IQGSAADIIKKAMIDMARRLKEEKLQTNLLLQVHDELIF 837 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 E P + + +M + +PLK + Sbjct: 838 EAPKEEIAILEKIVPEVMENALQ--LDVPLKVD 868 >gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment'] Length = 873 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 95/504 (18%), Positives = 172/504 (34%), Gaps = 120/504 (23%) Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L ++ E L + ++ + G+ VD L + ++ + ++L+ + +L G + Sbjct: 467 LLPLFTTIEMPLIEVLASMEEVGFSVDTDQLSELGKELESQLSRLESRIFALA-GEHFNI 525 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF L T+T VL +V N R A + Sbjct: 526 NSPKQLAEVLFQRLKLTPLKRTKTGYSTNVEVLQRLAVTHELPAEVLNYRSLAKLKSTY- 584 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ RL A RT R H +Q +T Sbjct: 585 -------VDVLLRL--------AERT---------------SGRIHTSFNQTVTATGRLS 614 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +S+P+ I +R +ASEG +L+ AD + IE R+LA ++ +Q + AF G Sbjct: 615 SSEPNLQNIPVRTEVGRRIRQAFVASEGHRLLSADYSQIELRILAHLSQDQALIAAFIAG 674 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ +T A F V P VT + R KV+ + Y +A+ ++ A Sbjct: 675 GDVHRSTAAEVFGVQPEAVTVEMRRRAKVINFGIVYGMSPF---GLAAELEISQEEAALY 731 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + + F E VS W Sbjct: 732 ID--RYFQIYHGVKAFIDRTICEARELGF----------------------VSTFW---- 763 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 +RR +P + K + + L R +NT + Sbjct: 764 ---------------GRRRAIPEL---KSSDQTVRQL------------GERLAVNTPIQ 793 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 + L + + A+SR + + + ++L +HDE++ E P+ + Sbjct: 794 GSAAD------LIKVAMIAISRR------LRSEQLETRMILQIHDELLFEVPEVE----L 837 Query: 646 MLYHLMTSNP-SWAKGL--PLKAE 666 + M + WA L PLK + Sbjct: 838 DVARRMATEEMEWAATLSVPLKVD 861 >gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] Length = 740 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 90/516 (17%), Positives = 168/516 (32%), Gaps = 133/516 (25%) Query: 171 IFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 I K+LE L + E L Y+ ++ G + + ++L++ + Sbjct: 327 ICKKLEKLQMLDLFYNIEMPLSYVLYSMEKEGIIARRDELKAYGDKLQIRISELEKSIYE 386 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G+ + ++L LF GL E T++ +KL P V + Sbjct: 387 -AAGVEFNINSPKQLGEILFERLGLPAEKKTKSGYSTAADVLEKLAPDYPIVAD------ 439 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L++ G ++ + R H +Q IT Sbjct: 440 ----------------------ILEYRGLAKLKSTYADGLAAY-IEEDGRIHTSFNQTIT 476 Query: 345 HLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I + +R + E AD + IE R+LA M+ +Q + Sbjct: 477 ATGRISSTEPNLQNIPMRTELGRLIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELI 536 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 A+ G+D++ T ++ F+V +VT QR K + + Y G +F ++ +++ Sbjct: 537 AAYHEGKDIHGITASKVFHVPFEEVTPLQRRNAKAVNFGIVY--GISSF-GLSQDLSISV 593 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +A+ + E +P Sbjct: 594 K----------------EAKEYMDKYFETYP----------------------------G 609 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577 + + E G ++ RR +P ++ Y R G R Sbjct: 610 VKAYQERVIADAKEKGYSLTMFGRR---------------RPIPELKASNYMMRQFGE-R 653 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 +N +Q + DI+ M+N K ++L +HDE Sbjct: 654 VAMNAP------------------IQGTAADIMKIAMINVYFRLKKEKLVSKLILQIHDE 695 Query: 632 IVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 +V ET D +E ++L M +PL AE Sbjct: 696 LVIETLKDEEEKVTALLTQEMERAAD--LSVPLLAE 729 >gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 916 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 110/664 (16%), Positives = 198/664 (29%), Gaps = 144/664 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y E L F D L D + LK+ LE+ V N+ + L Sbjct: 364 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 419 Query: 84 FNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + + L+LA S L + A + +E E+ + K Sbjct: 420 --LGVDLAGVNFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDE--EVYGKGAK--RA 473 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 D H K + ++L E+ L + + G V Sbjct: 474 IPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHV 533 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D A + + +L+Q + G + ++L LF + L + T+T Sbjct: 534 DAATLKEMGSKLVEREAELEQAIYQEA-GEEFNINSPKQLGVILFEKMKLPVIKKTKTGY 592 Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 VL P + R S+ + L++ ++ D Sbjct: 593 STAVDVLEKLADRAPIVQDILAYRQ-ISKLQSTYITGLLKVIHQDD-------------- 637 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 + H Q +T + DP+ I +R S Sbjct: 638 ----------------QKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPS 681 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQR 429 G K+ +D + +E RVLA + G++ F G+D++ T R F++ + +VT + R Sbjct: 682 APGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMR 741 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ +++ + + Sbjct: 742 RQAKAVNFGIVYGISDY---GLAQNIHVSRPQAHEFIQS------YFKEFPGVEKYVHDI 792 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 E A + ++ + +RR +P + Sbjct: 793 VELAKQQGYVE-------------------------------------TLTHRRRYLPEI 815 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + K RS R +NT +Q + DI Sbjct: 816 HAKSFTQ---------RSFA------ERMAMNTP------------------IQGSAADI 842 Query: 610 LAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + M+ KA ++L +HDE+V E P+ + L +M S +P Sbjct: 843 IKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPSIMDSAVK--LDVP 900 Query: 663 LKAE 666 LK E Sbjct: 901 LKVE 904 >gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae] Length = 877 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 100/533 (18%), Positives = 169/533 (31%), Gaps = 141/533 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + G KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKGYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 LP S + G + +Q + DIL M+ KA Sbjct: 773 ELPDINSRNFNIRGFAE-----------------ATAINSPIQGSAADILKIAMIQLDKA 815 Query: 621 ----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 816 LVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H] gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H] Length = 944 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 92/517 (17%), Positives = 155/517 (29%), Gaps = 79/517 (15%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + LK L++ V V N+ ++ TV + IP I +L Sbjct: 419 ERLKPLLQDASVLKVFQNAKYDLTVFR---GAGIPEITPIDDTMLISYAQSAGEHG---- 471 Query: 115 ALKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 Q M+E EL T+ + P + A Y D VT + Sbjct: 472 ------QGMDELSEL-HLGHTPVTYDSVTGTGRKRIPFAQVAIEAATAYAAEDADVTLRL 524 Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 ++ L P E+ L + + D G VD ++ ++QE Sbjct: 525 WQVLRPQLRTRQALALYEEIERPLIQILTDMEDVGIKVDATELRRMSADFAERMGTIEQE 584 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQV 276 + G + ++L LF E GL T++ T VL S + ++ Sbjct: 585 IHE-QVGRSFNVGSPKQLGEILFDEMGLPGGKRTKSGSWGTDSGVLESLAEQGHELPQKI 643 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R A + Q R H Sbjct: 644 LAWRQLA-------------------------------KLKSTYADALVQQMDQDTQRVH 672 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 IT +++P+ I +R +A+ G L+ AD + IE R+LA Sbjct: 673 TSFQMAITTTGRLSSNEPNLQNIPIRTEEGARIRKAFVATPGCVLLSADYSQIELRLLAH 732 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A + L+AF G+D++ T + F + + R K + + Y A + Sbjct: 733 VAKIEPLLEAFRLGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAF---GL 789 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A ++ + A R E E A + ++ T R + Sbjct: 790 AQQLQISPGEARSYIDAYFARYP------GIRAYMERTKEEAKKHGYVTTPFGR-RCYVP 842 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 + + G A KR V L Sbjct: 843 GITEKNGARRAYAERQAINAPLQGGAADIIKRAMVHL 879 >gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942] gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942] Length = 880 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 98/641 (15%), Positives = 197/641 (30%), Gaps = 159/641 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110 ++ K+ E+ +S L +++ +LA P+ + Sbjct: 359 EIFKKWAEDESQKKWVFDSKRSVVAL-RWQGIEL--KGAEFDALLAAYIINPANTYDDVA 415 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +V + L +E + + K R P E V RE Sbjct: 416 SVAKDYGLHIVSSDE--AVYGKGAK---------RAVPGENELAMHLVRKAAA-VDSLRE 463 Query: 171 IFKRLEPLSSKEQELWYLDQ---------TINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 K L+ L + +Q Y + + G VDV + + + + +++ Sbjct: 464 --KLLQELENNDQLELYEELELPLALILGEMESIGVKVDVGRLERMGEELGARLKEYEEK 521 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFN 278 + + G + ++L LF + GL + T+T VL + Sbjct: 522 IHEIA-GEPFNINSPKQLGVILFEKLGLPVVKKTKTGYSTSADVLEKLADQHDIVSYILQ 580 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R + + L++ + D + H Sbjct: 581 YRQ-IGKLQSTYIEGLLKVIRKD------------------------------SHKVHTR 609 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWM 392 +Q +T ++DP+ I +R + SE + AD + IE RVLA + Sbjct: 610 FNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHI 669 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ ++AF D++ T F+VA +VT R K + + Y + Sbjct: 670 SKDENLIEAFTNDMDVHTKTAMDVFHVAQDEVTPAMRRQAKAVNFGIVYGISDYGLSQ-- 727 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ A + E + ++ + E + A + ++ T Sbjct: 728 -NLGITRKEAAAFI------ERYLESFKGVKVYMEESVQEAKQKGYVTT----------- 769 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + ++RR +P + + + RS Sbjct: 770 --------------------------LMQRRRYIPELTSRNF---------NLRSFA--- 791 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVL 626 R+ +NT +Q + DI+ + M++ ++L Sbjct: 792 ---ERTAMNTP------------------IQGSAADIIKKAMIDMAAKLKEKQLKAKLLL 830 Query: 627 TVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 VHDE++ E P + L +M + +PLK + Sbjct: 831 QVHDELIFEAPKEEIKLLEKLVPEVMEHALN--LDVPLKVD 869 >gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159] gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159] Length = 878 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 112/670 (16%), Positives = 217/670 (32%), Gaps = 157/670 (23%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVL-KEALENTDVTIVAHNSYFER- 77 ++ + + D ++ ++ L KEAL T F+R Sbjct: 324 FEILNDNYHTQEMIGLAWGDDQA-IYATTDTSLLTHDLFKEALSKPIKTY-----DFKRG 377 Query: 78 TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-MEEGKELIARFCKG 136 VL + +D+P LA+ + +L + +E ++ + K Sbjct: 378 KVLLSHLGIDLPTAS--FDSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKR 435 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 E + + + L E +L+ L E L + + G Sbjct: 436 AIPEKNVLLSHLAKKISVLLASEEPMRQ---KLSANDQLDLLFEMELPLANVLAKMEIAG 492 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254 V + + ++E L QE+ L G + ++L LF + GL L Sbjct: 493 ISVRKETLQDMERANEIELQALTQEIYDLA-GEAFNINSPKQLGVILFEKLGLPLSATKK 551 Query: 255 TETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+T VL +P ++ R A + + L ++++ DG++ Sbjct: 552 TKTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQSTY-IIGLQDSISFDGKI------- 603 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366 H Q +T + DP+ I +R Sbjct: 604 ------------------------HTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRK 639 Query: 367 CVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424 + + L+ +D + IE RVLA ++G++ + AF+ G D++ +T R F + P V Sbjct: 640 AFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDV 699 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T + R K + + Y +A+ G++ + ++T Sbjct: 700 TPNDRRNAKAVNFGVVYGISDF---GLANNLGISRKAAKNYIETYF-------------- 742 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKR 543 R + N + + + + G + +R Sbjct: 743 ------------------------------ERYPGIKNYMDRVVREARDKGYVETLFHRR 772 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R++P + + + RS R+ +N+ +Q Sbjct: 773 RELPDINSRNF---------NIRSFA------ERTAINSP------------------IQ 799 Query: 604 AVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656 + DIL M++ +A ++L VHDEIV E P+ + E ++ M S Sbjct: 800 GSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQKLVKETMESAIE 859 Query: 657 WAKGLPLKAE 666 +PL A+ Sbjct: 860 --LSVPLVAD 867 >gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334] gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334] Length = 881 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 101/655 (15%), Positives = 199/655 (30%), Gaps = 165/655 (25%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101 + L V ++ + TV N+ + + ++LA Sbjct: 345 TKEETYVSTDVTLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404 Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 P L + E L + GK R P + + Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450 Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 F + D+T E ++ + + E L + + +G ++ + Sbjct: 451 GQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265 L++++ + G+ + ++L LF + L + T+T VL+ Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K +P + + G ++ Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380 LP + H Q +T + DP+ I + +R + S EG ++ +D Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R K + Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + G++ + Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558 + + H + + ++ E+G + +RR +P ++ Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ R R+ +NT +Q + DI+ M+ Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 KA ++L VHDE++ E P+ + S L +M S +PLK E Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870 >gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 921 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 98/515 (19%), Positives = 177/515 (34%), Gaps = 136/515 (26%) Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E+++ L E L + + RG +D A + V L + G Sbjct: 514 ELYESL------ELPLTPILADMERRGIAIDAAAFESFLSDVQGRLDTLTAAVYE-AAGR 566 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + R ++L LF L T+ +T Q L P V R + + Sbjct: 567 EFNIRSAQQLGDVLFSTLELPSPRKTKGGQASTSQDTLEKLAGRHPVVDSVLEFR-KLEK 625 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 L+ L M+ +GR+ H +Q T Sbjct: 626 MRSTYLDPLPRLMDGNGRI-------------------------------HTTFNQKATA 654 Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ I + +R+C IA+ G LV AD + +E RVLA M+ ++ L+ Sbjct: 655 TGRLSSSNPNLQNIPVRGDLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLE 714 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF GED++ T A +++AP QV+ DQR K + L Y GA QK+ ++ + Sbjct: 715 AFRNGEDIHARTAALVYDLAPDQVSPDQRRNAKTINFGLIYGMGA---QKLGQDLKISTS 771 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + E Sbjct: 772 EAK-----------------------------------------EFIARYFSRLTGLKEF 790 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++ + ++ + + +RR +P ++ P+G++ R + Sbjct: 791 YDSVEATAKR--QGYVTTLGGRRRLLPDIHS-----------PNGQAYALAR----RQAI 833 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVC 634 NT ++Q + DI+ M+ + ++L VHDE++ Sbjct: 834 NT------------------VIQGSAADIIKLAMLAVAEDEQLREHEARLLLQVHDELLL 875 Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGL--PLKAE 666 E P+ A + + LM+S + L PL + Sbjct: 876 EVPEASARAAGARVADLMSSVKPGGEPLSVPLVVD 910 >gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368] Length = 877 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 101/534 (18%), Positives = 172/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKSYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] Length = 888 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 85/624 (13%), Positives = 178/624 (28%), Gaps = 158/624 (25%) Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKL 118 ++ + +++ + +L + ++I ++LA P +L AL Sbjct: 390 DSKIKKCCYDTKADLWLL-HYYGIEINQPG--FDVMLADYLLNPGKSARSLPE--TALSH 444 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 ++EG E P E + + + ++ Sbjct: 445 LDIVLQEGSETY----------------LPASAEVISRLVDI----LQSKLLLQEQENLY 484 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L + ++ G VD +++ ++ + L ++ G + + ++ Sbjct: 485 YDIELPLLKVLASMERTGVSVDKEQLQLMSEELNKKLQVLTTDIYEHA-GEIFNINSTKQ 543 Query: 239 LKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L + LF + L T+T VL P + R Sbjct: 544 LGSILFEKLKLKAGKKTKTGYSTDVTVLEELAGDHPVVSLLLEYRQL------------- 590 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 ++ P+ + H Q +T +S+P+ Sbjct: 591 ------------------AKLKSTYVDGLTGLINPQTGKLHTTFHQAVTATGRLSSSEPN 632 Query: 356 PLQII-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + +R + + + AD + IE R+LA +A + + AF +D++ Sbjct: 633 LQNVPIRLDAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQDIH 692 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T + F VA +VT + R K + + Y +A + + Sbjct: 693 TRTASEVFGVAMDEVTPEMRGRAKAVNFGIVYGISDF---GLAKDIKVTRKEAGRYINNY 749 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + A E ++ Sbjct: 750 FNRY------SGVKAYIDRVIREAREKGYV------------------------------ 773 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 I +RR +P ++ V R G R+ +NT Sbjct: 774 -------TTILNRRRYLPDLFSSNR--------------VVRSFGE-RTAMNTP------ 805 Query: 590 EYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M M K ++L VHDE++ + ++ Sbjct: 806 ------------IQGSASDIIKLAMVLIYREMRKRKLSSTMILQVHDELIFDVVASEVEE 853 Query: 644 ASMLYH-LMTSNPSWAKGLPLKAE 666 L M + +PL + Sbjct: 854 MQNLVKYYMENAVE--LSVPLVVD 875 >gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair Position gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair Position gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site (- 1 Basepair Position) gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion Site gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion Site (-1 Basepair Position) Length = 580 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp Length = 580 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna. gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 10 Base Pairs Of Duplex Dna Following Addition Of A Single Dttp Residue gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 11 Base Pairs Of Duplex Dna Following Addition Of A Dttp And A Datp Residue. gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 15 Base Pairs Of Duplex Dna Following Addition Of Dttp, Datp, Dctp, And Dgtp Residues. gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 12 Base Pairs Of Duplex Dna Following Addition Of A Dttp, A Datp, And A Dctp Residue. gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Two Rounds Of Primer Extension, Following Incorporation Of Dctp And Dgtp. gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Three Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, And Dttp. gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Five Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, Dttp, And Datp. gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Cytosine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A Benzo[a]pyrene Adduct That Blocks Replication gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As Yet Unnamed) Dna Polymerase Fragment Length = 580 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 881 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 101/655 (15%), Positives = 199/655 (30%), Gaps = 165/655 (25%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101 + L V ++ + TV N+ + + ++LA Sbjct: 345 TKEETYVSTDVTLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404 Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 P L + E L + GK R P + + Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450 Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 F + D+T E ++ + + E L + + +G ++ + Sbjct: 451 GQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265 L++++ + G+ + ++L LF + L + T+T VL+ Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K +P + + G ++ Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380 LP + H Q +T + DP+ I + +R + S EG ++ +D Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R K + Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + G++ + Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558 + + H + + ++ E+G + +RR +P ++ Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ R R+ +NT +Q + DI+ M+ Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 KA ++L VHDE++ E P+ + S L +M S +PLK E Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870 >gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase Active Site gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active Site gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A Dna Polymerase gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine At The Polymerase Active Site Length = 580 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] Length = 863 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 72/403 (17%), Positives = 136/403 (33%), Gaps = 52/403 (12%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 + L + ++ G +D L ++ + + ++++++ G + ++L Sbjct: 471 ELDLPLARVLLSMERLGVRIDKDLLAKQSEELAKDIAEIEKQIHE-AAGESFNVGSPKQL 529 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL T+T L P A V R Sbjct: 530 GVILFEKLGLPAGKKTKTGYSTDEEVLLGLEHPIAKLVLQWR------------------ 571 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 S+ P P+ R H +Q +T ++ P+ Sbjct: 572 -------------EMSKLKSTYVDALPTMIDPKDERVHTSFNQALTTTGRLSSTQPNLQN 618 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I VR IA+ KL+ D + IE R+LA ++ + KAF D++ T Sbjct: 619 IPIRTARGQQVRKAFIAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATA 678 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F V VT + R K + + Y GA +A G++ ++ E Sbjct: 679 AEVFGVPLKDVTAEHRRSAKAVNFGIAYGQGAF---GLAENLGISRTEAKDII------E 729 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + R + + A E ++ T R ++ + S+ L +A Sbjct: 730 RYFNRFKNVREYIDGTIKMAHEKGYVETLFGR-RRYIDELQSKNMALKKFGERAAINAPI 788 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 G A K+ + + +K + ++L L++ D N Sbjct: 789 QGTASDLVKKAMIEV----FEKVPVRMLLQVHDELIFEDFEEN 827 >gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87] Length = 687 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 99/601 (16%), Positives = 192/601 (31%), Gaps = 133/601 (22%) Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 ++ + + L LA A L + E +L+ + Sbjct: 194 MMHLLQRYGFYVPSFKEDLHLAAFLLHSQATDTDSLISSLGIELPETIHDLLKK--AKTV 251 Query: 139 HECLYDRNKP-NHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 C DR P W+L D + L+ + E+ L + + ++G Sbjct: 252 EACHIDRLLPVTCAWTWQLSIRQDNIFD---ELKKDNLLDLYENIEKPLVRILFEMENQG 308 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 +D + + D L Q++ + + +V + ++L L+ E L Sbjct: 309 IHIDENVLDEIGAKTDTILESLTQQIHEMAH-MVFNINSPKQLAGVLYDELNLKGGGKKR 367 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 +T VL K P + + R + S+ + L + + D Sbjct: 368 STSAEVLEKLKGSHPIIDVLLDYR-KYSKIKSTYIEGLKKHIQQD--------------- 411 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 S+ H +Q +T +SDP+ I +R +A Sbjct: 412 ----------------SKIHTCFNQAMTQTGRLSSSDPNLQNISVRDEQGREIRKAFVAQ 455 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 +G KL+ AD + IE R+LA MA E ++AF+ G D++ T + F+V+ VT D R + Sbjct: 456 KGYKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRV 515 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + ++ ++T Sbjct: 516 AKTVNFGIVYGQTEFGLSQ---QLKISRKEAGEFMETYF--------------------- 551 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 + + + N+L ++ + +RR +P + Sbjct: 552 --------------------ASYPNIHQFMNQLIDFCKE--NGYVETMFHRRRMIPEI-- 587 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 DKN + R+ +N +Q + D++ Sbjct: 588 -NDKNFMTREF------------GKRAAMNAP------------------IQGSAADLIK 616 Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLK 664 M+ +A ++L +HDE++ PD + E +++ M +PLK Sbjct: 617 IAMIRVDQAMKEKNVKSKMLLQIHDELIFLVPDDELEVMQALVKEAMEQAME--LKVPLK 674 Query: 665 A 665 A Sbjct: 675 A 675 >gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402] Length = 944 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 98/613 (15%), Positives = 194/613 (31%), Gaps = 99/613 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL--KE 59 D ET S L + V F+ + + P+++ K+ Sbjct: 372 DCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAFKD 421 Query: 60 A------LENTDVTIVAHNSYFERTV-LKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A L ++ +T++ HN F+ L + I T++ A + Sbjct: 422 AQRAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGISA-NLFDTMIAAWLLDPARS---- 476 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 S M++ E I K + L + Y D +T + Sbjct: 477 -------SYGMDKLAESI-LGVKTIRFKDLVKTGQNFSDIPLNEACPYAAEDADITFRFY 528 Query: 173 KRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 K+ PL K E + L + +G + ++ + E ++++ Sbjct: 529 KKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCEKDI 588 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNN 279 L G + ++L+ LF E L T+T VL + P ++ Sbjct: 589 YRL-VGHEFNIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPAKIL-- 645 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + ++ P + R H Sbjct: 646 -----------------------------DYRALAKLKSTYTDTLPKMTD-KNGRIHTSF 675 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 Q T + DP+ I +R A +G+ L+ AD + IE +LA ++ Sbjct: 676 IQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLSK 735 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q ++AF G D++ T + F V V++D R I K + + Y A ++AS+ Sbjct: 736 DQNLVEAFNKGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAF---RLASS 792 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + +K + + + A + ++ T R ++ + Sbjct: 793 LRIPRKRADEFIKA------YFATYSGVSGFMAQVCQEAEQRGYVETLMGR-RRYLPAIN 845 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDV 573 S+ + T G A K + + +KK K + ++L L+ Sbjct: 846 SKNKVEKAGAERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAA 905 Query: 574 GNNRSYLNTTTRQ 586 + R + + ++ Sbjct: 906 ESEREKVMSLVKE 918 >gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] Length = 931 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 86/546 (15%), Positives = 184/546 (33%), Gaps = 76/546 (13%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-----LKEALENTDVTI 68 ID G+ + +I +F D + + + + L D+ I Sbjct: 364 IDFETTGLDTLTD--EIIGISFAIKSKEAFYLDLSGRTNIDKEACKKLVFDTLAKEDIKI 421 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEG 126 + HN +E +++A +D + ++A P AL S Sbjct: 422 IGHNLKYEYKMMRA---IDKKMGNMYFDTMVAAYLINPSRGRYNMDDLALSYLSY----- 473 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------ 180 I + + K + EY D +T ++ PL + Sbjct: 474 -NTIKY------SDITDNAKKTLLDVELKDVVEYACEDADITFRFYEYFAPLLNTYNLED 526 Query: 181 ----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + + G + +L++ K ++ G + + Sbjct: 527 LFFNVEMPLISVLADMEFDGVYISTEKMKSLSEEYASLLEKTKAKIYEKA-GEEFNLQSP 585 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 ++L+ LF + ++ T+T + ++ R + + Sbjct: 586 KQLEYILFEKLKINSTKKTKTGA-------YSTDEEVLRELAQREKIAE----------- 627 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 L + S+ VFP + +R H +Q +T +S+P+ Sbjct: 628 ---------YMLTYRKYSKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRLSSSEPNL 678 Query: 357 LQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I + +R+ IA +G L+ AD + IE R+LA + + ++AF+ +D++ Sbjct: 679 QNIPARGDEGKDIRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRK 738 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + ++V+ VT R K++ ++ Y A ++ ++ +K Sbjct: 739 TAMKIYSVSKEHVTPSMRNTAKIINFSIIYGKTAF---GLSKELNISRKEADDFIK--GY 793 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + FC + E+ ++ T R++ + +S + + NE + T Sbjct: 794 FSTYSQVKPFCEKVIEDVKAKG----YVRTMLGRIRDLSKTINSSNAVVRNEAERMALNT 849 Query: 532 IENGKA 537 + G A Sbjct: 850 LIQGSA 855 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%) Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYH 649 ++Q + D++ M+ K IV+ VHDE+V E + + A +++ Sbjct: 846 ALNTLIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKESDKAMTIMKE 905 Query: 650 LMT 652 +M Sbjct: 906 IME 908 >gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301] Length = 877 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 101/534 (18%), Positives = 172/534 (32%), Gaps = 143/534 (26%) Query: 161 CKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 CK V V E + ++L L EQ L ++ + G V + + Sbjct: 448 CKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENE 507 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNK 267 + KL QE+ L G + ++L LF + GL LE T+T VL Sbjct: 508 LVIEKLTQEIYELA-GEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLA 566 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + P ++ + R A + + L + + +DG++ Sbjct: 567 PIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI----------------------- 602 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADL 381 H Q +T + DP+ I +R + E L+ +D Sbjct: 603 --------HTRYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDY 654 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALG 440 + IE RVLA ++ ++ +KAF+ G D++ +T R F + P VT + R K + + Sbjct: 655 SQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVV 714 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +++ G++ + T Sbjct: 715 YGISDF---GLSNNLGISRKEAKAYIDTYF------------------------------ 741 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R + N + + + + KRR Sbjct: 742 --------------ERFPGIKNYMDEVVREARDKSYVETLFKRR---------------R 772 Query: 561 MLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 LP S + G R+ +N+ +Q + DIL M+ K Sbjct: 773 ELPDINSRNFNIRGFAERTAINSP------------------IQGSAADILKIAMIQLDK 814 Query: 620 A----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 A GY ++L VHDEIV E P ++ L M +PL A+ Sbjct: 815 ALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLIAD 866 >gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 11 Base Pairs Of Duplex Dna After Addition Of Two Datp Residues gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna Length = 580 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp Length = 579 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 135 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 194 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 195 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 253 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 254 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 285 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 286 LQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 345 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 346 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 405 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 406 RQAKAVNFGIPYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 456 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 457 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 479 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 480 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 506 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 507 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 564 Query: 663 LKAE 666 LK + Sbjct: 565 LKVD 568 >gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] Length = 873 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 82/535 (15%), Positives = 154/535 (28%), Gaps = 132/535 (24%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 L RF D + +A E + + E L + Sbjct: 426 LTERFSVPSIASGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 481 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G +D E ++ QE+ + G + ++L LF + Sbjct: 482 LVVMEKNGIYIDTEKLAETTARFKEELAQVQQEIYDIA-GETFNINSPKQLGVILFEKMN 540 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + +P ++ R Sbjct: 541 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILAYR------------------------- 575 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 ++ + R H +Q++T +SDP+ I Sbjct: 576 ------SVAKLVSTYCEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 629 Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R+ G LV AD + IE R+LA ++G++ +KAF G+D++ T A Sbjct: 630 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 689 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 + VT ++R+ K + + Y ++ G+ + + Sbjct: 690 SQEDVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 737 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 SR ++ + + ++ E GK Sbjct: 738 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 762 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+ LP S + R R+ +NT Sbjct: 763 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 792 Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M + ++L VHDE+V E +++ L Sbjct: 793 ---IQGTAADIIKLAMNQVEQKLEEGNFTSRLLLQVHDELVLEVVNSELEAVEEL 844 >gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] Length = 878 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 97/631 (15%), Positives = 193/631 (30%), Gaps = 140/631 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + L + + + R L D+ L+LA P+ + + Sbjct: 358 EAFMTFLADEKIAKDIFDLKRSRVAL-MWQGFDL--RGVAFDLLLATYIINPTNVSNEFK 414 Query: 115 --ALKLSSQKMEEGKELIARFCKGETHE-CLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 A+ + +E+ + K E R+ + A E + + Sbjct: 415 KVAMSYDYDDVLYDEEVYGKGAKRAIAEESQIARHSIDIATAVLKLKETALEQLKEQDQ- 473 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L E L + + G +D+ + Q + T L+ E+ G+ Sbjct: 474 ---LTLFEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHA-GMSF 529 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF + L + T+T VL P + R + Sbjct: 530 NINSPKQLGEVLFDKLSLPVIKKTKTGYSTNADVLEKLSDAHPIIKSIMEYRTLT-KLYS 588 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L +A SDG++ +Q +T Sbjct: 589 TYIEGLKKACYSDGKVHTIF-------------------------------NQALTQTGR 617 Query: 349 SITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + +P+ I +R + SE G ++ AD + IE R+LA ++ + ++AF Sbjct: 618 LSSIEPNLQNIPIRLEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAF 677 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + GED++ T F V+ ++T D R K + + Y A ++ + Sbjct: 678 KEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAF---GLSENLNITQKEA 734 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + + E+ + A + T Sbjct: 735 KKYID------HYLETYSGINQYMEDTVKDAKFHGYATTLFN------------------ 770 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +RR +P + S ++ R G R+ +N Sbjct: 771 -------------------RRRYIPEL--------------SQKNYALRQFGE-RTAMNA 796 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 +Q + DI+ + M++ A ++L VHDE++ E Sbjct: 797 P------------------IQGTAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEV 838 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 P + + ++ M +PLKA+ Sbjct: 839 PQEELDLMIELVTKTMEDVVK--LQVPLKAD 867 >gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813] Length = 880 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 122/687 (17%), Positives = 217/687 (31%), Gaps = 162/687 (23%) Query: 9 ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 E S D G + ED L + + D ++ +L+EAL Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSDVSLLQEALFKKA 366 Query: 66 VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123 ++ F+R+ VL FN+D+P LA+ + V +L + + Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183 + + + K R P + K V I ++L ++ +E+ Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLDHLAKKVKVLVDSEANIMQQL-KVNEQEE 474 Query: 184 ELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 L+ ++Q + RG V + + L QE+ L G + Sbjct: 475 LLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSP 533 Query: 237 EKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++L LF GL +E T+T + ++L P + V Sbjct: 534 KQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK---------------- 577 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 L++ ++ L + H Q +T +SDP Sbjct: 578 ------------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDP 624 Query: 355 DPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D+ Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684 Query: 409 YVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + +T R F + P VT + R K + + Y G+ + Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYID 741 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 T R + N + Sbjct: 742 TY--------------------------------------------FERYPGIKNYMETV 757 Query: 528 FEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + + G + +RR +P + + R+ R R+ +N+ Sbjct: 758 VREAKDKGYVETLFHRRRSLPDI--------------NSRNFNIRQF-AERTAINSP--- 799 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTD 640 +Q + DIL M+N + GY ++L VHDEIV E P+ + Sbjct: 800 ---------------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 844 Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAE 666 L M S S +PL A+ Sbjct: 845 IGAIKELVTKTMESAIS--LSVPLIAD 869 >gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656] gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656] Length = 903 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 82/499 (16%), Positives = 161/499 (32%), Gaps = 132/499 (26%) Query: 171 IFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + ++L+ ++ E L ++ + + G D + V T+L++++ Sbjct: 490 LLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADGIKLKEYGDKLAVSITELEKKIYE 549 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF + GL E T+T T VL P + R Sbjct: 550 -AAGEEFNINSPKQLGVILFEKLGLPNEKKTKTGYSTAADVLEKLAPEYPIVADILEYRQ 608 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L + SDG+ H L+Q Sbjct: 609 LTKLKSTYA-DGLSGYIASDGK-------------------------------IHTTLNQ 636 Query: 342 IITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 IT +++P+ I + +R + EG V +D + IE RVLA ++G++ Sbjct: 637 TITATGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDE 696 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF+ G+D++ +T + F+ +VT QR K + + Y A +++ G Sbjct: 697 RMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAF---GLSNDLG 753 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + K+ + Sbjct: 754 ISRKEAQGYIDSYFV-----------------------------------------KYPK 772 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + E L Q +NG R + + N + Sbjct: 773 IKEF---LDQTVLDAKKNGYTKTMFGR--IRPIPELNSSNFMQRQF------------GE 815 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHD 630 R +N+ +Q + DI+ M+ D ++L VHD Sbjct: 816 RVAMNSP------------------IQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHD 857 Query: 631 EIVCETPDTDEFNASMLYH 649 E++ ET + ++ L Sbjct: 858 ELLIETKEAEKDKVIKLLE 876 >gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46] gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46] Length = 881 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 84/485 (17%), Positives = 146/485 (30%), Gaps = 125/485 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VDV L + + +L + ++L Sbjct: 479 DLEVPLAPVLGRMERAGIAVDVDALEELRKQAQAATDDAESAARNLVDKPELNLGSPKQL 538 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVE 296 + LF + G+ T+T + L F + + R + + L++ Sbjct: 539 QEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYLLKFRESQKMKSTVEGLIK 598 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A+ DGR+ T +Q + +++P+ Sbjct: 599 AVADDGRIHTT-------------------------------FNQTVAATGRLSSTEPNL 627 Query: 357 LQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + EG +L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 628 QNIPVRTEFGRRIREAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEAYRQGEDLHN 687 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 ++ F V +VT + R K M L Y A +A + Sbjct: 688 YVGSKVFGVGIDEVTPELRRRVKAMSYGLAYGLSAF---GLAQQLDIPQREA-------- 736 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 KK R + + LH+ EQ Sbjct: 737 ------------------------------------KKLMEDYFERFGGVRDYLHKVVEQ 760 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 ++G RR LP + ++ R+ Sbjct: 761 ARKDGFTATMFDRRRY---------------LPELNA----------------DNRIARD 789 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 L I Q + DI+ M+ A ++L VHDE+V E D +E Sbjct: 790 NAERAALNSPI-QGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVEVADGEEAAI 848 Query: 645 SMLYH 649 L H Sbjct: 849 KELLH 853 >gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3] gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3] Length = 945 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 97/610 (15%), Positives = 176/610 (28%), Gaps = 142/610 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118 L + + AH+ L LD+P+ LA LP + + Sbjct: 429 LADPNQPKAAHDVKGPMLALTE---LDLPLAGVTSDTALAAYLALPGQRSFDLADLVARY 485 Query: 119 SSQKMEE-----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK--GDVTVTREI 171 + + G++L T + + ++ + D + R Sbjct: 486 LHRDLSADPVPGGQQL--------TLDGSGEADQAHADAVRARACLELADALDADLERRS 537 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L L E L + + G VD L + E + + + + G Sbjct: 538 AATL--LRDIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEI-VGRPF 594 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 + ++L+ LF E GL +T + L Q+ + R Sbjct: 595 NLGSPKQLQQILFDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRD----- 649 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +R + P + R H +Q I + Sbjct: 650 ---------------------VARLKTVVDSLIPM--IDDIGRIHTTFNQTIAATGRLSS 686 Query: 352 SDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +DP+ I +R + G L+ AD + IE R++A ++G++ ++AF +G Sbjct: 687 ADPNLQNIPIRTAEGRQIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSG 746 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ A +F + ++V + R K M L Y A +A G+ + Sbjct: 747 EDLHTFVAAEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAF---GLAGQLGIAPDEA--- 800 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 ++ +R + + L Sbjct: 801 -----------------------------------------REHMDAYFARFGGVRDFLR 819 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 E+ ++G RR LP T+ Sbjct: 820 GVVERARKDGYTETILGRRRY---------------LPDL----------------TSDN 848 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDT 639 R+ L I Q + DI+ M+ +A ++L VHDE+V E Sbjct: 849 SQRRQMAERMALNAPI-QGSAADIIKIAMLGVDRALCAGGYASRLLLQVHDELVLEIAPG 907 Query: 640 DEFNASMLYH 649 + L Sbjct: 908 EHDAVERLVR 917 >gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33] gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33] gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84] gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7] gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407] gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 05ZYH33] gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 98HAH33] gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84] gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407] gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7] gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1] Length = 878 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 98/514 (19%), Positives = 175/514 (34%), Gaps = 135/514 (26%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++L+ L E L + + G V+ + +V +L +E+ L G + Sbjct: 469 QQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELA-GQEFN 527 Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L T LF + GL LE T+T VL + P ++ R + Sbjct: 528 INSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQS 587 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L +A+ DG + H Q +T Sbjct: 588 TY-VVGLQDAILEDG-------------------------------KIHTRYVQDLTQTG 615 Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++DP+ I +R + S E L+ +D + IE RVLA ++ +Q ++A Sbjct: 616 RLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEA 675 Query: 402 FETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F+ G D++ +T R F + A+ VT + R K + + Y +++ G+ Sbjct: 676 FQQGADIHTSTAMRVFGIEKAEYVTPNDRRNAKAVNFGVVYGISDF---GLSNNLGITRK 732 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T R + Sbjct: 733 EAKAYIDTYF--------------------------------------------ERFPGI 748 Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 N + + + G I ++RR++P + + R+ R+ R+ Sbjct: 749 KNYMETIVREARDKGYVETIYKRRRELPDI--------------NSRNFNVRNF-AERTA 793 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 +N+ +Q + DIL M+N KA ++L VHDEIV Sbjct: 794 INSP------------------IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + E +M+ M S S +PL A+ Sbjct: 836 LEVPVAELETVKAMVKETMESAIS--LSVPLIAD 867 >gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] Length = 881 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 101/655 (15%), Positives = 198/655 (30%), Gaps = 165/655 (25%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101 + L V ++ + TV N+ + + ++LA Sbjct: 345 TKEETYVSTDVTLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404 Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 P L + E L + GK R P + + Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450 Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 F + D+T E + + + E L + + +G ++ + Sbjct: 451 GQFARKSDALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265 L++++ + G+ + ++L LF + L + T+T VL+ Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K +P + + G ++ Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380 LP + H Q +T + DP+ I + +R + S EG ++ +D Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R K + Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + G++ + Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558 + + H + + ++ E+G + +RR +P ++ Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ R R+ +NT +Q + DI+ M+ Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 KA ++L VHDE++ E P+ + S L +M S +PLK E Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELVPKVMDSAVH--LDVPLKVE 870 >gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629] gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1] Length = 903 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 82/499 (16%), Positives = 160/499 (32%), Gaps = 132/499 (26%) Query: 171 IFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + ++L+ + E L ++ + + G D + V T+L++++ Sbjct: 490 LLQKLKEMDMLTLYRDIELPLVFVLYDMENEGIRADGIKLKEYGDKLAVSITELEKKIYE 549 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF + GL E T+T T VL P + R Sbjct: 550 -AAGEEFNINSPKQLGVILFEKLGLPNEKKTKTGYSTAADVLEKLAPEYPIVADILEYRQ 608 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L + SDG+ H L+Q Sbjct: 609 LTKLKSTYA-DGLSGYIASDGK-------------------------------IHTTLNQ 636 Query: 342 IITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 IT +++P+ I + +R + EG V +D + IE RVLA ++G++ Sbjct: 637 TITATGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDE 696 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF+ G+D++ +T + F+ +VT QR K + + Y A +++ G Sbjct: 697 RMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAF---GLSNDLG 753 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + K+ + Sbjct: 754 ISRKEAQGYIDSYFV-----------------------------------------KYPK 772 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + E L Q +NG R + + N + Sbjct: 773 IKEF---LDQTVLDAKKNGYTKTMFGR--IRPIPELNSSNFMQRQF------------GE 815 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHD 630 R +N+ +Q + DI+ M+ D ++L VHD Sbjct: 816 RVAMNSP------------------IQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHD 857 Query: 631 EIVCETPDTDEFNASMLYH 649 E++ ET + ++ L Sbjct: 858 ELLIETKEAEKDKVIKLLE 876 >gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] Length = 899 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 152/491 (30%), Gaps = 127/491 (25%) Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L E+ L + + G VD A ++ L+ + + G + Sbjct: 494 LLPLYRDVERPLVPVLCEMERAGILVDRAAMEGMSAEFGRTMQDLEARIHA-AAGHPFNI 552 Query: 234 RCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +L LF E L + +T T Q VL + V +R A Sbjct: 553 ASTRELAQVLFTELALPVLKRLKTGPSTDQDVLEKLAEQHELPRLVLEHRALA------- 605 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + P PR R H Q Sbjct: 606 ------------------------KLKGTYVDALPQLVDPRDGRIHTTFHQAGAATGRLS 641 Query: 351 TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +SDP+ I +S +R+ +A G +L+ AD + IE R+LA + + L+AF Sbjct: 642 SSDPNLQNIPVRTELSRRIRAAFVAPPGWRLLSADYSQIELRILAHYSDDPALLEAFRLR 701 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T A +F VA +VT D R I KV+ + Y A + L + Sbjct: 702 EDVHTRTAAETFGVATGEVTSDMRRIAKVLNFGIAYGLSAFGLSQ---RLDLPGAEAQGI 758 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + +R + + + Sbjct: 759 ID--------------------------------------------RYFARYAGVRRYVE 774 Query: 526 QAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A E G++ + + R +P + + P+ R+ R+ +NT Sbjct: 775 KAVEDARATGESRTLFGRARAMPEIAARN---------PALRNAA------ERTAINTP- 818 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPD 638 +Q + DI+ M+ A ++L VHDE+V E P+ Sbjct: 819 -----------------IQGTAADIVKVAMIRVHDALAGDARRARLLLQVHDELVLEVPE 861 Query: 639 TDEFNASMLYH 649 + L Sbjct: 862 DELAPVEALVR 872 >gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] Length = 886 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 104/640 (16%), Positives = 207/640 (32%), Gaps = 161/640 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 L++ LE+ + + L LDI ++LA ++ Sbjct: 367 LRQMLEDKTIKKNVFDIKRTYVGLHR---LDIKAEGLDYDMLLASYLVNNENNSNDLGEI 423 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A ++ E+ + K + F + + Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAV------------PDDNDFFEHLAAKVAVIEKLKTPL 471 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 LE L EQ+ Y + + G V+ ++ + L V+ +L+ ++ Sbjct: 472 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282 G + ++L LF + GL T+T + ++L +P ++ + R Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L++ + DGR+ H Q Sbjct: 591 A-KIQNTYVKGLLDCIQPDGRI-------------------------------HTRYLQT 618 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395 +T + DP+ I +R + S +G D + +E RVLA ++G+ Sbjct: 619 LTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677 Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF++G D++ T + F++ P +VT R K + + Y ++ Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ ++ E +P Sbjct: 735 LGISRKQAKTFIEN----------------YFEQYP------------------------ 754 Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ N + +A ++ ENG A I +RR +P ++ K + RS Sbjct: 755 ----QIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 R+ +N+ +Q + DI+ M+N K +VL Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 VHDE++ + P + + +M S +PL A+ Sbjct: 838 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 875 >gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] Length = 880 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 92/608 (15%), Positives = 185/608 (30%), Gaps = 131/608 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVG 113 ++ LE+ D+ + + + LK I + + +A + ++ Sbjct: 358 IRTILEDEDIEKIGYEMKADYVALKPY---GIDLRNMAFDIAIAEYVIDSKTSTSYDIDS 414 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC---KGDVTVTRE 170 + K + + ++L+ + K + + + + + Sbjct: 415 ISSKYIYKTIMSKEDLLGKGAKALDYRQVDLEKLDQYVSGMLSTIIGSYPKMKKIIDEDQ 474 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E L + + G CVD + L + D K ++ + L G Sbjct: 475 LSMLFY---DVEMPLVEVLAEMEYAGICVDRDILSNLAKDFDEIIDKTEKNIHELA-GQD 530 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF + GL + T+T +KL Sbjct: 531 FNVNSPKQLGHILFEKLGLPVIKKTKTGYSTNAEVLEKL--------------------- 569 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + + ++ + + R H +Q IT Sbjct: 570 -------RDKHEIINMITEYRSVVKLKSTYVDGIEALVNAKDGRIHSSFNQTITTTGRIS 622 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++DP+ I +R IA + LV AD + +E RVLA M+ + ++AF +G Sbjct: 623 STDPNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFNSG 682 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T ++ FNV QVT + R+ K + + Y +A ++ Sbjct: 683 EDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGIIYGKSDF---GLAQDLNISQKKAKEY 739 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 +++ + E +M E Sbjct: 740 IES-----YFNKYETIKAFMDHIVSEAE-------------------------------E 763 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + + TI N +RR +P + K N + R+ +N Sbjct: 764 KGYSTTIFN-------RRRYIPEI---KSSNFV------------EKNRGKRAAMNAP-- 799 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT 639 +Q + DI+ M+N ++L VHDE++ E Sbjct: 800 ----------------IQGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELIVEATAD 843 Query: 640 DEFNASML 647 + +L Sbjct: 844 ELTQVEVL 851 >gi|332638560|ref|ZP_08417423.1| DNA polymerase I [Weissella cibaria KACC 11862] Length = 904 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 104/635 (16%), Positives = 199/635 (31%), Gaps = 136/635 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 + L++ V N+ L+ L +P L+L + Sbjct: 384 VNRILQDATVKKNVFNAKGTIVALRR-LGLTLP--NVAFDLLLVAYLLDANDNNNDMGAL 440 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + +E+ + K E D + H + +Y K + ++ Sbjct: 441 AHENGYYAVRTDEEVYGKGAKFAIPEA--DEDLFEHLGRKAMAIQYLKDPLMAKLTEHEQ 498 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E L Y+ + G VD + + +L+Q + G + + Sbjct: 499 TQLYDDIELPLTYVLADMEATGITVDANTLLEMRSKLTERLAELEQTIYQQA-GHEFNVQ 557 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF E G T+T + + P + R A + Sbjct: 558 SPKQLGVVLFEEMGYTPIKKTKTGYSTSVEVLEQMGDVPLVASILAYRQIAKIQST--YV 615 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + + G+ S+ H Q +T + Sbjct: 616 EGLLRV-----IHGS------------------------DSKVHTRYLQTLTQTGRLSSV 646 Query: 353 DPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 DP+ I +R + E G +++ AD + IE RVLA + G++ +AF GE Sbjct: 647 DPNLQNIPVRIEEGRRIRKAFVPREKGWRILSADYSQIELRVLAHITGDKHLQEAFINGE 706 Query: 407 DLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T R F + P + V + R K + + Y +A G++ + Sbjct: 707 DIHAATARRIFGIGPDETVDGNIRRQAKAVNFGIVYGISDF---GLAKNIGVSRKQAKQI 763 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + T +++ V E+ Sbjct: 764 IDTYF-----------------------------------------EQYPGVKTWSEEII 782 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + + IA +RR +P + K + RS R+ +N+ Sbjct: 783 AAARE--QGYVETIAHRRRYLPDIKAKNF---------NLRSFA------ERTAMNSP-- 823 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT 639 +Q + DI+ M+N KA ++L VHDE++ E P++ Sbjct: 824 ----------------IQGSAADIIKIAMINMEKALRDAGLQAKMLLQVHDELIFEAPES 867 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673 + L +M S +PL +E + + Sbjct: 868 ELPILHELVPRVMDSAMQ--LDVPLIVASHEGETW 900 >gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7] gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7] Length = 880 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 104/615 (16%), Positives = 194/615 (31%), Gaps = 129/615 (20%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ EN + V+HN TV K + I +A + + Sbjct: 379 LKDIFENDKIEKVSHNIKVPYTVFKK---MGINFTSVKFDTEIAAYL-----IDSSRGEY 430 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 L+S + K ++ GE E N +F K + + L Sbjct: 431 GLNSIIQDYLKIMLQ----GEEDEIRVKENSLLKD----VFETLNKQ--IKELNMEELLY 480 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + EQ L + + G+ VD L + +E KL +++ L + Sbjct: 481 EV---EQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDIYGLA-EEEFNINSP 536 Query: 237 EKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L + T+T VL P ++ R + + Sbjct: 537 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLEQLLDKHPIIEKITYYRQFT-KLYSTYIEG 595 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L ++ DG++ + + TGR S QN+P Sbjct: 596 LKAVIDKDGKIHSSFNQT-VTTTGRLSSTEPNLQNIPIKYE------------------- 635 Query: 354 PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 + +R + E ++ AD + IE RVLA +A ++ + AF D++ T Sbjct: 636 ------MGREIRKVFVPEDENSIILSADYSQIELRVLAHIADDENLIDAFLNHSDIHTKT 689 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + F V QVTK QR+ K + + Y G + A ++ + + T Sbjct: 690 ASEVFKVPIDQVTKLQRSNAKAVNFGIVYGIGDFSL---AKDLKISRKEAKNYIDT---- 742 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + + + +N + A ++L++ T Sbjct: 743 --YFERYPGVKRYMDNVIKQAEDNLYVTT------------------------------- 769 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 I +RR +P + K R +NT + Sbjct: 770 ------IMNRRRFIPEIKNSKK---------------MVKAFGERLAMNTPIQ------- 801 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651 G + I ++ + ++ + ++L VHDE++ + L M Sbjct: 802 --GSAADIIKMSM---VNVYNILKSKNLKSKVILQVHDELILNVYKDELEEVKELVKNQM 856 Query: 652 TSNPSWAKGLPLKAE 666 +PL+ + Sbjct: 857 EDVMK--LRVPLEVD 869 >gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] Length = 994 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 105/647 (16%), Positives = 199/647 (30%), Gaps = 145/647 (22%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D + P + LK LE+ V V N ++ V+ I + T++++ Sbjct: 458 DQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMAR---RGIRVAPIDDTMLISYVL-- 512 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA---WRLFGEYCK 162 L M+E L + + + K + Y Sbjct: 513 ---------EGGLHGHGMDELSRL-HLGHEPIPFKSVAGTGKAQKSFKHVELKPATCYAA 562 Query: 163 GDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVD 212 D VT +++ L+P + E+ + + + RG VD A L+ Sbjct: 563 EDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPARLRRLSSEFG 622 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268 + +L+ + + G + ++ LF E L T + T L + Sbjct: 623 LRMAELEAQAHEIA-GRPFNVGSPRQIGEILFGELNLPGGKKTASGQWETGAATLEGLAE 681 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + + R S+ Sbjct: 682 THALPRVLLDWRQL-------------------------------SKLKGTYTDALVAAM 710 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAG 383 P+ R H +SDP+ I +R IA +G L+ AD + Sbjct: 711 DPQTDRVHTSYQLAAATTGRLASSDPNLQNIPIRTETGRQIRQAFIAKDGHVLISADYSQ 770 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA + +AF+ G D++ T + F V A + + R K + + Y Sbjct: 771 IELRLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVADMDPETRRRAKAINFGIVYGI 830 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A +A+ G++ +A + + E P Sbjct: 831 SAF---GLANQLGIDQG----------------EAGAYIKTYFERFP------------- 858 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 ++ + V L + + ++ +P + Sbjct: 859 -GIRTYMDATRAEVRSL-------------GFVSTVFGRKIHIPAI-------------- 890 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623 + +S R G R+ +N + G + I +A+ R G + A Sbjct: 891 ASKSGAERQFGE-RAAINAPIQ---------GAAADIIRRAMIR---MPGALEAAGLETK 937 Query: 624 IVLTVHDEIVCETPDTDEFNAS-MLYHLM--TSNPSWAKGLPLKAEG 667 ++L VHDE+V E P+ + A ++ +M + P+ A +PL + Sbjct: 938 MLLQVHDELVFEAPEAEVEAAIPLIKRIMEGAAEPAVALSVPLVVDA 984 >gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99] gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99] Length = 899 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 93/504 (18%), Positives = 163/504 (32%), Gaps = 129/504 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E + +L + G VD+ + L Q ++ + E G + + Sbjct: 496 LTDMELPVQHLLAEMETAGIAVDLTMLGGL-QRHFADQIRDAAEAAYAVIGKQINLGSPK 554 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTL 294 +L+ LF E + T+T + + L + F + A R + ++ L Sbjct: 555 QLQVVLFDELRMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGL 614 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + ++ DGR+ T +Q I +++P Sbjct: 615 LNSVADDGRIHTT-------------------------------FNQTIAATGRLSSTEP 643 Query: 355 DPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R + +G +L+ AD + IE R++A ++ ++ ++AF TGEDL Sbjct: 644 NLQNIPIRTDAGRQIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDL 703 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +R+F V +VT + R K M L Y A + Sbjct: 704 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSSQLKIS------------- 750 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 E K Q SR + + L Sbjct: 751 ----------------------------------TEDAKVQMDQYFSRFGGVRDYLMAVV 776 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 EQ ++G RR LP L+++ RQ Sbjct: 777 EQARKDGYTSTVLGRR---------------RHLPE---------------LDSSNRQ-V 805 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642 RE L I Q + DI+ M+ KA ++L VHDE++ E + Sbjct: 806 REAAERAALNAPI-QGSAADIIKVAMIEVDKALKEHALKSRMLLQVHDELLFEVAAGERE 864 Query: 643 NASMLYH-LMTSNPSWAKGLPLKA 665 L M S ++ +PL+ Sbjct: 865 QIEALVRDKMGS--AYPLDVPLEV 886 >gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 906 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 98/641 (15%), Positives = 194/641 (30%), Gaps = 157/641 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 LK LE+ + V N ++ +L N I + ++ L +V Sbjct: 384 DQLKLILEDVSIGKVGQNLKYDAHILA---NYQIDLQGISDDTMVKSYC-----LNSVAT 435 Query: 115 ALKLSS-------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 + K ++ + K T + Y V V Sbjct: 436 RHNIDDLSEYYLNHKTIHFDDIAGKGKKQITFNQV----------DLETAFPYACEYVIV 485 Query: 168 TREI----------FKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 T + + +L L E L + + G +D+ T + + Sbjct: 486 TDLLNHVLDEEIVQYPKLVKLYQNLELPLIKVLLCMERNGIELDMNELSTQQIDIVQQMK 545 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 + ++ L G + + ++++ LF GL L L + T + S+N++ Sbjct: 546 DIQAQVFELA-GDIFNLESPKQIQQILFEPEGLGLTPL-KKTPKGAPSTNEEALKLLDHP 603 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + L + ++ P Q R H Sbjct: 604 LVDL--------------------------ILSYRTLTKLNSTYLEALPKQIDLNTHRLH 637 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 Q +T +S+P+ I +R +A + ++ AD + IE R++A Sbjct: 638 TSYHQAVTVTGRLSSSNPNLQNIPIRSKQGARIRGAFVAGKDNVIIAADYSQIELRIMAQ 697 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ ++ L AF +D++ T + FN+ +VTK R K + L Y A Sbjct: 698 LSQDKNLLDAFNHDKDVHSVTASTMFNMPINEVTKKHRRRSKAINFGLIYGMSAF----- 752 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 GL +++ + + D ++ E A Sbjct: 753 ----GLTKQIDVSIIEAKQYIDTYFDNYPGVLHYMDSIKESA------------------ 790 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 ++W + + +R +P + K + L Sbjct: 791 -------KVWGYVE------------TVMGRRLYLPQINSK------------NKILQQH 819 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625 + R+ +N Q S DI+ + M++ ++ Sbjct: 820 AL---RTAINAPM------------------QGSSADIIKKSMLDIHAWIGENNPDIRMI 858 Query: 626 LTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKA 665 + VHDE+V E ++ A + LM + + +PLK Sbjct: 859 MQVHDELVFEVSESKADEFAHKIQGLMANV--YLLDIPLKV 897 >gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6] gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6] Length = 877 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 98/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 431 GVKKAIPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + ++ KL QE+ L G + ++L LF + L LE Sbjct: 491 GITVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLALPLEYTK 549 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIR 637 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 638 KAFVPEWENSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIDTYF------------- 741 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 857 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 858 Q--LSVPLIAD 866 >gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] Length = 876 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 100/661 (15%), Positives = 206/661 (31%), Gaps = 141/661 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y +D ++ F F +D + D P+++K LEN + +++ V Sbjct: 328 YLQD-TILKFGF-YDGVDHVVIDSDQLKEYPELIKW-LENETTEKIVYDAKKTYVVAHR- 383 Query: 84 FNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 LDI I + ++LA P + V + +Q ++ I+ + KG+ Sbjct: 384 --LDIDIKNIVFDVMLASYIIDPSRTIDDVNSVVSNYNQNF--VQDDISIYGKGKKRHVP 439 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 D H + CK ++ E ++++ L + E L + + + G D+ Sbjct: 440 EDTILNKHIASITEAIYACKREMVAELESHQQIDLLLNLELPLARILSEMEETGIYTDIN 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261 + + + L + G + ++L LF L + T+T Sbjct: 500 DLRQMQSEIQGKLDLLISNIHE-AAGEEFNINSPKQLGVVLFETLELPVIKKTKTGYSTA 558 Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + P + R S+ Sbjct: 559 VDVLEQLQGQHPIIDYILEYRQL-------------------------------SKLQST 587 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA-SEG 373 + + +R H +Q + + DP+ I +R S Sbjct: 588 YVEGLQK-VISKDNRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAFKPTSND 646 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 ++ AD + IE RVLA + ++ +AF +D++ T + F+V +V R K Sbjct: 647 SVILSADYSQIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMRRQAK 706 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + + + + ++ + + + + A Sbjct: 707 AVNFGIVYGISDYGLSQ---SLNITRKKAKAFID------DYLASFPGVKQYMSDIVKDA 757 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 D ++ T +RR +P + Sbjct: 758 KADGYVETLL-------------------------------------HRRRYIPDI---- 776 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R+ R R+ +NT +Q + DI+ Sbjct: 777 ----------NSRNFNLRGF-AERTAMNTP------------------IQGSAADIIKLA 807 Query: 614 MMNATKA------GYDIVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 M+ + ++L VHDE++ E P + ++F+ + +M +PLK Sbjct: 808 MVEFDRQIKQTSYHAQLLLQVHDELIFEVPANEVEDFSL-FVEEIMEHALQ--LDVPLKV 864 Query: 666 E 666 + Sbjct: 865 D 865 >gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 881 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 97/652 (14%), Positives = 197/652 (30%), Gaps = 159/652 (24%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK--------ACFNLDIPIHRWICTLVL 99 + L +V +S + TV L +P ++L Sbjct: 345 TKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNIVAAHRLGLHLP--DIAFDVLL 402 Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 A P + A + +++ + K R P + + F Sbjct: 403 ASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAK---------RQVPEDKLLFEQF 453 Query: 158 GE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + D+T ++ + + E L + + +G ++ + Sbjct: 454 ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEF 513 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKK 268 L++++ G+ + ++L LF + L + T+T VL+ K Sbjct: 514 SQSIKVLEEKIYGEA-GVKFNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKS 572 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 +P + + G ++ Sbjct: 573 ASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLLKAQ 601 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVADLAG 383 +P + H Q +T + DP+ I + +R + S ++ +D + Sbjct: 602 MP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHPDWQIFSSDYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442 IE RVL+ ++G++ +AF+ G D++ T + F + P +VT D R K + Y Sbjct: 661 IELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG 720 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 +A G++ + Sbjct: 721 ISDY---GLAQNIGISRKQAKAFIDGYF-------------------------------- 745 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561 + + + H + + ++ E+G + +RR +P ++ Sbjct: 746 -----EQYPKVH-------DYMENMVKKAREDGYVETLFHRRRYLPQIHS---------- 783 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 R+ R R+ +NT +Q + DI+ M+ KA Sbjct: 784 ----RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQKAL 820 Query: 622 ------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + L +M S S A +PLK E Sbjct: 821 DEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLA--VPLKVE 870 >gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] Length = 881 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 101/655 (15%), Positives = 198/655 (30%), Gaps = 165/655 (25%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101 + L V ++ + TV N+ + + ++LA Sbjct: 345 TKEETYVSTDITLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404 Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 P L + E L + GK R P + + Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450 Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 F + D+T E + + + E L + + +G ++ + Sbjct: 451 GQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265 L++++ + G+ + ++L LF + L + T+T VL+ Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K +P + + G ++ Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380 LP + H Q +T + DP+ I + +R + S EG ++ +D Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R K + Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + G++ + Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558 + + H + + ++ E+G + +RR +P ++ Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ R R+ +NT +Q + DI+ M+ Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 KA ++L VHDE++ E P+ + S L +M S +PLK E Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870 >gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346] Length = 882 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ L I + L +N + ++ V Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + +E + + K + P E +F + + + + Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465 Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L L+ K E L + + G VD + ++++++ Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 + G + ++L LF + GL + T+T VL K+ P + R Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + L++ + D ++ H Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R + E + +D + IE RVLA ++ Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF G+D++ +T R F V VT + R K + + Y + Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + T +K Sbjct: 730 NLGITREQAQQYIDTYF-----------------------------------------EK 748 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + E+ + + + + +RR + + + R+ R Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DIL M+ K ++L Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMAHRLKEEKLQATMLLQ 833 Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652 VHDE+V E P+++ + L +M Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859 >gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583] gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1] gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2] gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1] gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11] gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98] gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712] gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613] gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583] gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1] gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2] gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1] gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11] gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98] gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712] gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613] gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76] gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017] gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027] gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141] gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244] gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012] gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031] gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043] gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312] gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341] gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467] Length = 882 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ L I + L +N + ++ V Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + +E + + K + P E +F + + + + Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465 Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L L+ K E L + + G VD + ++++++ Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 + G + ++L LF + GL + T+T VL K+ P + R Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + L++ + D ++ H Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R + E + +D + IE RVLA ++ Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF G+D++ +T R F V VT + R K + + Y + Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + T +K Sbjct: 730 NLGITRKQAQQYIDTYF-----------------------------------------EK 748 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + E+ + + + + +RR + + + R+ R Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DIL M+ K ++L Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833 Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652 VHDE+V E P+++ + L +M Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859 >gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] Length = 865 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 86/520 (16%), Positives = 158/520 (30%), Gaps = 132/520 (25%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V + ++ E + E+ L + + G VDV + + L+Q + Sbjct: 451 VKEELKANQQFELYETLERPLSGVLAEMEWTGIRVDVGTLQEMQHDLAGRLHDLEQLIYG 510 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF + L T+T T VL + L P + R Sbjct: 511 -EVGEEFNINSPKQLGVILFEKMELPAFKKTKTGYSTAADVLEKLRPLHPVIDHIMLYR- 568 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L + + D + H Q Sbjct: 569 ELQKLQSTYVEGLQKVIKED-------------------------------GKIHTRFAQ 597 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 I + +P+ I +R + SE G L AD + IE RV+A M+ + Sbjct: 598 TIAQTGRLSSVNPNLQNIPVRIEEGRKIRKAFVPSEPGWSLYAADYSQIELRVMAHMSED 657 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF D++ T + F VAP VT + R K + + Y + Sbjct: 658 KTLVQAFLDDADIHTQTASSVFGVAPNDVTGNMRRQAKAVNFGIIYGISDYGLSQ---NL 714 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ + + Sbjct: 715 NISRKEAQDFIDRYF-----------------------------------------ELFP 733 Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ + A E+ NG + +RR++P + K + R Sbjct: 734 QIKLF---MDAAIEKARMNGFVETLMNRRRNIPDINSKNF---------NLRGFA----- 776 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 R+ +NT +Q + DI+ + M++ A ++L V Sbjct: 777 -ERTAINTP------------------IQGSAADIIKKAMLDVHAALEQSPLRARLLLQV 817 Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG 667 HDE++ E PD + L M +PL+ +G Sbjct: 818 HDELIFEAPDEELDALKTLVKQAMEQTVQ--LSVPLRVDG 855 >gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8] gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8] gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000] Length = 882 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ L I + L +N + ++ V Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + +E + + K + P E +F + + + + Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465 Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L L+ K E L + + G VD + ++++++ Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 + G + ++L LF + GL + T+T VL K+ P + R Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + L++ + D ++ H Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R + E + +D + IE RVLA ++ Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF G+D++ +T R F V VT + R K + + Y + Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + T +K Sbjct: 730 NLGITRKQAQQYIDTYF-----------------------------------------EK 748 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + E+ + + + + +RR + + + R+ R Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DIL M+ K ++L Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833 Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652 VHDE+V E P+++ + L +M Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859 >gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 878 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 97/631 (15%), Positives = 192/631 (30%), Gaps = 140/631 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + L + + + R L D+ L+LA P+ + + Sbjct: 358 EAFMTFLADEKIAKDIFDLKRSRVAL-MWQGFDL--RGVAFDLLLATYIINPTNVSNEFK 414 Query: 115 --ALKLSSQKMEEGKELIARFCKGETHE-CLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 A+ + +E+ + K E R+ + A E + + Sbjct: 415 KVAMSYDYDDVLYDEEVYGKGAKRAIAEESQIARHSIDIATAVLKLKETALEQLKEQDQ- 473 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L E L + + G +D+ + Q + T L+ E+ G+ Sbjct: 474 ---LTLYEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHA-GMSF 529 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF + L + T+T VL P + R + Sbjct: 530 NINSPKQLGEVLFDKLSLPVIKKTKTGYSTNADVLEKLSDAHPIIKSIMEYRTLT-KLYS 588 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L +A SDG++ +Q +T Sbjct: 589 TYIEGLKKACYSDGKVHTIF-------------------------------NQALTQTGR 617 Query: 349 SITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + +P+ I +R + SE G ++ AD + IE R+LA ++ + ++AF Sbjct: 618 LSSIEPNLQNIPIRLEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAF 677 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + GED++ T F V+ ++T D R K + + Y A ++ + Sbjct: 678 KEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAF---GLSENLNITQKEA 734 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + + + E+ + A + T Sbjct: 735 KKYID------HYLKTYSGINQYMEDTVKDAKFHGYATTLFN------------------ 770 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 +RR +P + S ++ R G R+ +N Sbjct: 771 -------------------RRRYIPEL--------------SQKNYALRQFGE-RTAMNA 796 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636 +Q + DI+ + M++ A ++L VHDE++ E Sbjct: 797 P------------------IQGTAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEV 838 Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 P + + ++ M +PLKA+ Sbjct: 839 PQEELDLMIELVTKTMEDVVK--LQVPLKAD 867 >gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W] gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II] Length = 881 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 101/655 (15%), Positives = 198/655 (30%), Gaps = 165/655 (25%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101 + L V ++ + TV N+ + + ++LA Sbjct: 345 TKEETYVSTDITLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404 Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 P L + E L + GK R P + + Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450 Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 F + D+T E + + + E L + + +G ++ + Sbjct: 451 GQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265 L++++ + G+ + ++L LF + L + T+T VL+ Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K +P + + G ++ Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380 LP + H Q +T + DP+ I + +R + S EG ++ +D Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R K + Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + G++ + Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558 + + H + + ++ E+G + +RR +P ++ Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ R R+ +NT +Q + DI+ M+ Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 KA ++L VHDE++ E P+ + S L +M S +PLK E Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870 >gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form). gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form) Length = 580 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNYGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] Length = 239 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 117/289 (40%), Gaps = 63/289 (21%) Query: 399 LKAFETGEDLYVTTYARSFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TT 455 +K F+ D+Y + + F+V + V R GK+ ELALGY G A + + T Sbjct: 1 MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIGALDT 60 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 GL+ + + +WR + Sbjct: 61 GLSEDELQ-----------------------------------------PLVDSWRASNP 79 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV 573 + + W ++ + + I+ A + + L ++LPSGR L Y + Sbjct: 80 NIVQFWWDVDRCVKTAIKQRTA------TETHGIRFVYQNGILFIVLPSGRRLCYVKPKI 133 Query: 574 GNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626 G N+ + T ++ R +YG K ENIVQA+SRDIL M + IV Sbjct: 134 GENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMRTLSH--CFIVG 191 Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 VHDE++ ETP + A + + P W GL L+A+GYE+ Y+K Sbjct: 192 HVHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238 >gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation Length = 580 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNYGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol] gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol] Length = 882 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ L I + L +N + ++ V Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + +E + + K + P E +F + + + + Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465 Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L L+ K E L + + G VD + ++++++ Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 + G + ++L LF + GL + T+T VL K+ P + R Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + L++ + D ++ H Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R + E + +D + IE RVLA ++ Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF G+D++ +T R F V VT + R K + + Y + Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + T +K Sbjct: 730 NLGITRKQAQQYIDTYF-----------------------------------------EK 748 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + E+ + + + + +RR + + + R+ R Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DIL M+ K ++L Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833 Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652 VHDE+V E P+++ + L +M Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859 >gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna (Open Form) Length = 580 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNYGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08] Length = 920 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 101/621 (16%), Positives = 181/621 (29%), Gaps = 144/621 (23%) Query: 51 PVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP- 106 + P+ K L + + H++ ++A + C LA P Sbjct: 394 ELDPEDEKSFAAWLADNECPKAMHSAK---GPVEALAGRGWEVAGLTCDTELASYLLHPD 450 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GD 164 + K + + EG+E + + + D + E+ K D Sbjct: 451 RRSHKFDDAVRTHLNLTLGEGEE--------NSDQAMLDFGNDSSAESMERAVAVTKLAD 502 Query: 165 V-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V E E L E + ++ G VD + L D T+ Sbjct: 503 VMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAW 562 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L+ LF + + T++ + L + F + Sbjct: 563 E-AAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLE 621 Query: 284 SRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R A+ ++ L++ + DGR+ T Sbjct: 622 HRDAIKLRQTVDGLLKEIRDDGRVHTT-------------------------------YM 650 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 Q I + DP+ I +R + EG + L+ AD + IE R++A ++G Sbjct: 651 QTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSG 710 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF +G+D + T + F VAP V+ QR+ K M L Y A Sbjct: 711 DQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKV 770 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + K+ Sbjct: 771 S-----------------------------------------------VGEAKELMAGYF 783 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++ L + +Q G RR LP Sbjct: 784 SRFGKVHEYLEEVVDQARRQGYTETLLGRRRY---------------LPDL--------- 819 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTV 628 T+T + R+ L I Q + D++ M+ + ++L V Sbjct: 820 -------TSTNRQRRDMAERAALNAPI-QGSAADLIKLAMVATDQKLAEAGLTSRVLLQV 871 Query: 629 HDEIVCETPDTDEFNASMLYH 649 HDE++ E +E + Sbjct: 872 HDELILEVTKDEEEKVRQIVT 892 >gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B] gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B] Length = 880 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 124/686 (18%), Positives = 213/686 (31%), Gaps = 160/686 (23%) Query: 9 ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 E S D G + ED L + + D ++ +L+EAL Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSNVSLLQEALFKKA 366 Query: 66 VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123 ++ F+R+ VL FN+D+P LA+ + V +L + + Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EP 177 + + + K R P + K V I ++L E Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + RG V + + L QE+ L G + + Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSPK 534 Query: 238 KLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 +L LF GL +E T+T + ++L P + V Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK----------------- 577 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 L++ ++ L + H Q +T +SDP+ Sbjct: 578 -----------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPN 625 Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D++ Sbjct: 626 LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIH 685 Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +T R F + P VT + R K + + Y G+ + T Sbjct: 686 TSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYIDT 742 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 R + N + Sbjct: 743 Y--------------------------------------------FERYPGIKNYMETVV 758 Query: 529 EQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + G + +RR +P + + R+ R R+ +N+ Sbjct: 759 REAKDKGYVETLFHRRRSLPDI--------------NSRNFNIRQF-AERTAINSP---- 799 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDE 641 +Q + DIL M+N + GY ++L VHDEIV E P+ + Sbjct: 800 --------------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEI 845 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAE 666 L M S S +PL A+ Sbjct: 846 GAIRELVTKTMESAIS--LSVPLIAD 869 >gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3] gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6] gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG] gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3] gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6] gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG] gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137] gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62] gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF] Length = 882 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 92/626 (14%), Positives = 190/626 (30%), Gaps = 154/626 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ L I + L +N + ++ V Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + +E + + K + P E +F + + + + Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465 Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L L+ K E L + + G VD + ++++++ Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 + G + ++L LF + GL + T+T VL K+ P + R Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + L++ + D ++ H Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R + E + +D + IE RVLA ++ Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF G+D++ +T R F V VT + R K + + Y + Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 729 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + T +K Sbjct: 730 NLGITRKQAQQYIDTYF-----------------------------------------EK 748 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + E+ + + + + +RR + + + R+ R Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DIL M+ K ++L Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833 Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652 VHDE+V E P+++ + L +M Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859 >gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG] Length = 881 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 97/652 (14%), Positives = 197/652 (30%), Gaps = 159/652 (24%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK--------ACFNLDIPIHRWICTLVL 99 + L +V +S + TV L +P ++L Sbjct: 345 TKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNIVAAHRLGLKLP--DIAFDVLL 402 Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 A P + A + +++ + K R P + + F Sbjct: 403 ASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAK---------RQVPEDKLLFEQF 453 Query: 158 GE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + D+T ++ + + E L + + +G ++ + Sbjct: 454 ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEF 513 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKK 268 L++++ G+ + ++L LF + L + T+T VL+ K Sbjct: 514 SQSIKVLEEKIYGEA-GVKFNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKS 572 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 +P + + G ++ Sbjct: 573 ASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLLKAQ 601 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVADLAG 383 +P + H Q +T + DP+ I + +R + S ++ +D + Sbjct: 602 MP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHPDWQIFSSDYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442 IE RVL+ ++G++ +AF+ G D++ T + F + P +VT D R K + Y Sbjct: 661 IELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG 720 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 +A G++ + Sbjct: 721 ISDY---GLAQNIGISRKQAKAFIDGYF-------------------------------- 745 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561 + + + H + + ++ E+G + +RR +P ++ Sbjct: 746 -----EQYPKVH-------DYMENMVKKAREDGYVETLFHRRRYLPQIHS---------- 783 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 R+ R R+ +NT +Q + DI+ M+ KA Sbjct: 784 ----RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQKAL 820 Query: 622 ------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + L +M S S A +PLK E Sbjct: 821 DEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLA--VPLKVE 870 >gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] Length = 831 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 86/501 (17%), Positives = 151/501 (30%), Gaps = 125/501 (24%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VD ++ + + +L +E+ L G + +L Sbjct: 431 EIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLA-GEEFNLNSPRQL 489 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + GL + T+T ++L P E + Sbjct: 490 GVILFEKLGLPVIKKTKTGYSTDAEVLEELLP----------------------FHEIIG 527 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L + + P R + H +Q T +S+P+ I Sbjct: 528 K------ILNYRQLMKLKSTYTDGLMPLINERTGKLHTTFNQTGTLTGRLASSEPNLQNI 581 Query: 360 -----ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 + +R I S G +V AD + IE R+LA + E ++A++ GED++ T Sbjct: 582 PIRLELGRKLRKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTA 641 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V+ +VT + RA K + + Y + + +K Sbjct: 642 SEVFGVSLEEVTPEMRAHAKSVNFGIVYGISDF---GLGRDLKIPREVAGKYIK------ 692 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + ++ L + E Sbjct: 693 --------------------------------------NYFANYPKVREYLDELVRTARE 714 Query: 534 NG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 G + +RR +P + K R+ +NT Sbjct: 715 KGYVTTLFGRRRYIPELSSKNRT---------------VQGFGERTAMNTPL-------- 751 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646 Q + DI+ M+N K ++L+VHDE+V E P + Sbjct: 752 ----------QGSAADIIKLAMINVEKELKARKLKSRLLLSVHDELVLEVPAEELEEVKA 801 Query: 647 LYH-LMTSNPSWAKGLPLKAE 666 L +M S +PL AE Sbjct: 802 LVKGVMESVVE--LKVPLIAE 820 >gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054] Length = 895 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 121/674 (17%), Positives = 192/674 (28%), Gaps = 155/674 (22%) Query: 26 EDVCVIL---FAFGFDDHPVELWDCVHDPVM----PQVLKEA--------LENTDVTIVA 70 ED L +++ VE P L EA L + Sbjct: 326 EDARTALAADYSWALGSGEVEQIALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKAL 385 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 H + V++A LA P + L G+ L Sbjct: 386 HIAK---QVMRAFAERGWSFAGVTADTALAAYLEKPGRRAFTLDVLAEEYL----GRSLA 438 Query: 131 ARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 + ET + +D ++P+ + G +E E Sbjct: 439 PATAQAETGQLSFDADEPDPTAGAQALMTRARAVHDLAGLFDTRLAEVGAVELFHDMELP 498 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 + L + G D L E + +E + G + ++L+ LF Sbjct: 499 IAELLARMERHGIAADREWLRGLEAQFAAEIQRCVEEAHA-AAGREFNLGSPKQLQEILF 557 Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 + GL +T + L Q + R +L Sbjct: 558 GDLGLPKTKKIKTGYTTDADALTWLATQTTNELPVILLRHRDQA--------------KL 603 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 R T++ G +T PQ R H +Q++ + DP+ I Sbjct: 604 RTTVE--GLLKTVS-------PQ-----GRIHTTFNQMVAATGRLSSQDPNLQNIPVRTE 649 Query: 361 -SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R + EG L+ AD + IE R++A ++ ++ ++AF +GEDL+ T ++ F Sbjct: 650 EGRAIRRAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVASQVFA 709 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 VAPA V + R K M L Y A + G+ L+ T Sbjct: 710 VAPADVDAEMRRKIKAMSYGLAYGLSAYGLSQ---QLGIKPAEAQGLMDTYF-------- 758 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 R + + LH E+ G Sbjct: 759 ------------------------------------ERFGGVRDYLHNVVEEARAVGYTE 782 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 RR LP L + RQ RE L Sbjct: 783 TLLGRRRY---------------LP---------------DLTSDNRQ-RREMAERMALN 811 Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651 I Q + DI+ M+ +A ++L VHDEIV E + L M Sbjct: 812 API-QGSAADIVKIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEALVREQM 870 Query: 652 TSNPSWAKGLPLKA 665 PL+A Sbjct: 871 AGA------YPLRA 878 >gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch Length = 580 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNYGIVYGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] Length = 888 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 101/638 (15%), Positives = 209/638 (32%), Gaps = 153/638 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALK 110 Q K +E+ V +++ + +LK L + + +++A L + Sbjct: 367 QAFKNWIEDPHAKKVLYDAKRSQVILK---GLGMDLEGVSDDVLIASYLIHARDLSGDVA 423 Query: 111 AVGEALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 V L + E+ + K E LYD + K + Sbjct: 424 NVAREFNL--DYLAYDSEVYGKGKKVAVPEDKTRLYD-HLVAKVSVINDLLPIIKDRLEA 480 Query: 168 --TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 E+++++ E L + + G VD + L+Q + + +L +E+ Sbjct: 481 DEMVELYRKI------ELPLAQVLAKMEIMGISVDRSRLVGLSQSYEEQLDQLQEEIYRE 534 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKL--TPQAIQVFNNRMR 282 G+ + ++L LF + GL T++ S +KL P + R Sbjct: 535 A-GVEFNINSTQQLSKVLFEDMGLKGGKKTKSGNYSTAQSELEKLQGVPIIDLILAYRQL 593 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + +++ ++ DG++ H Q Sbjct: 594 AKLQSTY-VQGILDYIHQDGKV-------------------------------HSRFIQT 621 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396 +T ++DP+ I +R + S + +D + IE RVLA ++G+ Sbjct: 622 LTTTGRLSSADPNLQNIPIRTEEGRKIRQAFVPSHPDWVIFSSDYSQIELRVLAHVSGDP 681 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF+ +D++ T A+ F+ ++KD+R K + + Y + Sbjct: 682 HLQEAFKENKDIHTATAAKVFHKDEKDISKDERRQAKAVNFGIVYGISDYGLSQ---NLS 738 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + + Sbjct: 739 ISRQEAKAFID-----------------------------------------KYFEIYPK 757 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGN 575 V+E + ++ E E G A RR LP ++ Y Sbjct: 758 VAE---YMDKSVEIAREAGYAKTLFNRRRY---------------LPDLKAKNYNVRSFA 799 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629 R+ +N+ +Q + DI+ M+ +A +++L VH Sbjct: 800 ERTAMNSP------------------IQGTAADIIKVAMVEMDQALKEHQLQANLLLQVH 841 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE++ E D E A+++ +M + S +PL + Sbjct: 842 DELIFEVAKEDLEDLAALVKDVMENAVS--LDVPLIVD 877 >gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 881 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 101/655 (15%), Positives = 198/655 (30%), Gaps = 165/655 (25%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLAR 101 + L V ++ + TV N+ + + ++LA Sbjct: 345 TKEETYVSTDVTLLTLPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLAS 404 Query: 102 SNGLPS----ALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 P L + E L + GK R P + + Sbjct: 405 YLINPDENSNDLGKIAEDHDYHDLPRDEDIYGK--------------GAKRQVPEDDKLF 450 Query: 155 RLFGE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 F + D+T E + + + E L + + +G ++ + Sbjct: 451 GQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMG 510 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265 L++++ + G+ + ++L LF + L + T+T VL+ Sbjct: 511 TEFSQSIKILEEKIYAEA-GVKFNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNE 569 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K +P + + G ++ Sbjct: 570 LKSASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLL 598 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVAD 380 LP + H Q +T + DP+ I + +R + S EG ++ +D Sbjct: 599 KAQLP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHEGWQIFSSD 657 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439 + IE RVL+ ++G++ +AF+ G D++ T + F ++ P QVT D R K + Sbjct: 658 YSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGI 717 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y + G++ + Sbjct: 718 VYGISDYGLSQ---NIGISRKQAKAFIDGYF----------------------------- 745 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNL 558 + + H + + ++ E+G + +RR +P ++ Sbjct: 746 --------DQYPKVH-------DYMDAMVKKAREDGYVETLFHRRRYLPQIHS------- 783 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 R+ R R+ +NT +Q + DI+ M+ Sbjct: 784 -------RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQ 817 Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 KA ++L VHDE++ E P+ + S L +M S +PLK E Sbjct: 818 KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870 >gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 880 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 109/654 (16%), Positives = 199/654 (30%), Gaps = 153/654 (23%) Query: 55 QVLKEALENTDVT--IVAHN---------SYFERTVLKACFNLDIPIHRWICTLVLARSN 103 +VL++ D+ H S + K F I + + + VL Sbjct: 327 EVLRDNYHREDIIGFAWGHGEQIYASTDLSLLSTDLFKKVFEKPIATYDFKRSKVLLSHL 386 Query: 104 GLPSALKAVGEALK---LSSQKMEEGKELIARF--CKGETHECLYDRNKPNHREAWRLFG 158 GL + L LS+ + E + F E + +Y + L Sbjct: 387 GLDLVAPSYDARLANYLLSNVEDNELTTIARLFTDISLEADDSIYGKGVKRAVPEKELLL 446 Query: 159 EYCKGDVTV----------TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 + V V ++ E L + + G V+ A + Sbjct: 447 GHLARKVKVLLDSRAPMVEKLADHDQIALYHEIELPLANILAKMEIEGIKVNRATLQDMA 506 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSN 266 + L QE+ + G + ++L + LF + L LE T+T + Sbjct: 507 EQNKAIIEALTQEIYDMA-GQEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVL 565 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 ++L P A V L + ++ Sbjct: 566 ERLAPIAPIVAK----------------------------ILDYRQITKLQSTYVIGLQD 597 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVAD 380 L + H Q +T + DP+ I +R S E L+ +D Sbjct: 598 YILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFTPSQEDAVLLSSD 656 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELAL 439 + IE R+LA ++G++ + AF G D++ +T R F + VT + R K + + Sbjct: 657 YSQIELRLLAHISGDEHLIAAFNEGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGI 716 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y +++ G+ + T + + + EN A + ++ Sbjct: 717 VYGISDF---GLSNNLGITRKQAKSYIDT------YFERYPGIKAYMENVVREAKDKGYV 767 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 + ++RR++P + Sbjct: 768 -------------------------------------ETLFKRRRELPDI---------- 780 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 + R+ R R+ +N+ +Q + DIL M+N Sbjct: 781 ----NSRNFNVRSF-AERTAINSP------------------IQGSAADILKIAMINLDN 817 Query: 620 AG------YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 A ++L VHDEIV E P+T+ L M A +PL+A+ Sbjct: 818 ALQAGGFKAKMLLQVHDEIVLEVPNTELAAVKKLVKETMEVAVDLA--VPLRAD 869 >gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] Length = 904 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 112/633 (17%), Positives = 196/633 (30%), Gaps = 154/633 (24%) Query: 54 PQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 P+ ++ L + V H + + L+ I LA P Sbjct: 376 PEDVRALDGWLADPAVPKAFHEAKWATHALRG--GGFAEIAGVTTDTGLAAYIARPGQ-- 431 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + L + + + GE L D + +EA E RE Sbjct: 432 ---RSFNLPDLALRYLRRQLGPEDGGEKQLSLLDDSTGEDKEADDSITEAA-----AIRE 483 Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L+ + K E L ++ + + G VD L+ + + Sbjct: 484 LGGALDDVLDKAGSADLLRTMELPLTFVLARMEEAGIAVDQDGLAGLHADFAARVKQAAE 543 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 S+ G + ++L+ LF E G+ T+T + + L + F Sbjct: 544 SAYSVI-GKEINLGSPKQLQVVLFDELGMPKTKKTKTGHTTDADALQWLFEKTEHPFLLY 602 Query: 281 MRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + R A L++A+ DGR+ T Sbjct: 603 LLEHRDATRLMTTAQGLIKAIGPDGRIHTT------------------------------ 632 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAW 391 Q + ++DP+ I + +R + EG + L+ AD + IE R++A Sbjct: 633 -FRQDVAATGRLSSTDPNLQNIPVRTDEARRIRGVFVVGEGHEALMTADYSQIEMRIMAH 691 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++G+ ++AF TGEDL+ +R+F V +V + R K M L Y A + Sbjct: 692 LSGDDGLIEAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAMSYGLAYGLSAF---GL 748 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 AS G++ K Sbjct: 749 ASQLGVSGEEA--------------------------------------------KAQMD 764 Query: 512 QKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +R + + LH E+ G + +RR +P + Sbjct: 765 AYFARFGGVRDYLHAVVEEARRKGYTETLFGRRRYLPDL--------------------- 803 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DI 624 T+ Q R L I Q + DI+ M++ +A + Sbjct: 804 -----------TSDNQQQRAVAERAALNAPI-QGSAADIIKVAMIHVAEALAEREMRSRM 851 Query: 625 VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656 +L VHDE+V E D + E A+++ M S Sbjct: 852 LLQVHDELVLEVADGEREELAALVSEQMGSAIE 884 >gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 81/502 (16%), Positives = 157/502 (31%), Gaps = 123/502 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + G VD + + + + ++Q + L G + + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELA-GQEFNINSPK 236 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF + L + ++T +KL P + +VE Sbjct: 237 QLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAP-------------------YHEIVE- 276 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 L + + P + H +Q +T +++P+ Sbjct: 277 --------NILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQ 328 Query: 358 QII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + SE + AD + IE RVLA +A + ++AF D++ Sbjct: 329 NIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTK 388 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F V+ +VT + R K + + Y +A ++ A + Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDY---GLAQNLNISRKEAAEFI----- 440 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + ++ + EN + A + ++ T Sbjct: 441 -ERYFESFPGVKRYMENIVQEAKQKGYVTTLL---------------------------- 471 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +RR +P + R+ R R +NT Sbjct: 472 ---------HRRRYLPDITS--------------RNFNVRSF-AERMAMNTP-------- 499 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645 +Q + DI+ + M++ + ++L VHDE++ E P + Sbjct: 500 ----------IQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLC 549 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 L +M + +PLK + Sbjct: 550 RLVPEVMEQAVT--LRVPLKVD 569 >gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] Length = 893 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 106/627 (16%), Positives = 194/627 (30%), Gaps = 132/627 (21%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVG 113 LK +EN + N + +LK + + ++ L + + L + Sbjct: 372 ELKSVIENAGIIKNVFNIKAQLILLKR-LGIKLKGTKFDFLLVSYLLDTTDNDNELATLA 430 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + L E+ A+F E + + N + E D + Sbjct: 431 QRFDLYMTSDEDIYGKGAKFAIPEDDARVL-AHLANKADILMQV-EQSAFDALQE---HE 485 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + + E L + + +G +D R ++ + G + Sbjct: 486 QTHLYTEIELPLAQVLADMEYQGIKIDQKRLRD-IGSDLEGRIHAIEDAIYIEAGEKFNI 544 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL + T+T + +KL QA V Sbjct: 545 NSPKQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQAPIVD---------------- 588 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 LQ+ ++ + S+ H Q +T + D Sbjct: 589 ------------HILQYRQLAKLKSTYVEGLLTVVHDQDSKIHTRFLQTLTQTGRLSSVD 636 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R+ + SE ++V AD + IE RVLA M G++ +AF GED Sbjct: 637 PNLQNIPMRTEEGRQIRTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGED 696 Query: 408 LYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T F + V R K + + Y +A+ G++ + Sbjct: 697 IHAETARAVFGLKDDAPVDALMRRTAKAVNFGIVYGISDF---GLANNLGISRGEAKSFI 753 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 T +++ WM E A E F+ T Sbjct: 754 DT-----YFKEFPQIHAWM-AKIKEIAHEQGFVET------------------------- 782 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 IA++RR +P + K + RS R+ +N+ Sbjct: 783 ------------IAKRRRYLPEIGSKNF---------NLRSFA------ERTAMNSP--- 812 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD 640 +Q + DI+ M+ A ++L VHDE++ E P + Sbjct: 813 ---------------IQGSAADIIKIAMIKVADALQEHHMQARMLLQVHDELIFEAPIDE 857 Query: 641 EFNASMLYH-LMTSNPSWAKGLPLKAE 666 + L +M S +P++ E Sbjct: 858 IQELTELVTNVMDSAVV--LDVPMRVE 882 >gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] Length = 878 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 107/674 (15%), Positives = 206/674 (30%), Gaps = 165/674 (24%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + ++ + ++ L +A + F+R+ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKA-IYVSTNLDLLKDDLFKAALAKPIKTY----DFKRSK 378 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLP------SALKAVGEALKLSSQKMEEGKELIAR 132 VL + +D+P LA+ S + + L S + GK + Sbjct: 379 VLLSHLGVDLPAP--AFDSRLAKYLLSTVDDNELSTIAQLYTDYVLDSDEAVYGKGVKR- 435 Query: 133 FCKGETHECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 E L + NH E L + L EQ L + Sbjct: 436 -AVPEKAVLLSHLARKIVVLNHSEKVML-----GKLTEHQQA-----SLLFDMEQPLANV 484 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G V + + L QE+ L G+ + ++L LF + Sbjct: 485 LAKMEIAGISVKKETLQEMEKANQAAIDNLTQEIYDLA-GMEFNINSPKQLGELLFDKMQ 543 Query: 249 LHL--EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 L T+T + ++L P + V Sbjct: 544 LPTSYTKKTKTGYSTAVDVLERLAPISPIVSK---------------------------- 575 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----S 361 L++ ++ L + + H Q +T + DP+ I Sbjct: 576 ILEYRQIAKLQSTYIVGLQDFIL-KDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQG 634 Query: 362 DCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R + + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + Sbjct: 635 RLIRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIE 694 Query: 421 -PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 P VT + R K + + Y +A+ G+ ++T + + Sbjct: 695 KPEDVTPNDRRNAKAVNFGIVYGISDY---GLANNLGIPRKVAKQYIET------YFERY 745 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + E A + ++ T + Sbjct: 746 PGIKDYMERVVRDAKDKGYVET-------------------------------------L 768 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 +RR++P + + R+ R R+ +N+ Sbjct: 769 FHRRRELPDI--------------NARNFNVRQF-AERTAINSP---------------- 797 Query: 600 NIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 +Q + DIL M+N KA + ++L VHDEI+ E P + E ++ M Sbjct: 798 --IQGSAADILKIAMINLDKALVEGKFKTKMLLQVHDEIILEVPKDELEAIEKLVKETME 855 Query: 653 SNPSWAKGLPLKAE 666 S +PL A+ Sbjct: 856 SAIE--LSVPLVAD 867 >gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261] gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261] Length = 877 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 98/551 (17%), Positives = 171/551 (31%), Gaps = 141/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 + P + V + ++L L EQ L ++ + Sbjct: 431 GVKKAIPEREKFLEHLARKIAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIA 490 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--D 253 G V + ++ KL QE+ L G + ++L LF + L LE Sbjct: 491 GIKVKKETLLEMQAENELVIEKLTQEIYELA-GEEFNINSPKQLGVLLFEKLELPLEYTK 549 Query: 254 LTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T+T VL + P ++ + R A + + L + + +DG++ Sbjct: 550 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTY-VIGLQDWILADGKI------ 602 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 H Q +T + DP+ I +R Sbjct: 603 -------------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 637 Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQ 423 + E L+ +D + IE RVLA ++ ++ +KAF+ G D++ +T R F + P Sbjct: 638 KAFVPEREDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPED 697 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +++ G++ + T Sbjct: 698 VTANDRRNAKAVNFGVVYGISDF---GLSNNLGISRKGAKAYIDTYF------------- 741 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 R + N + + + + G KR Sbjct: 742 -------------------------------ERFPGIKNYMDEVVREARDKGYVETLFKR 770 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NRSYLNTTTRQLTREYTYGGKLTENIV 602 R LP S + G R+ +N+ + Sbjct: 771 R---------------RELPDINSRNFNIRGFAERTAINSP------------------I 797 Query: 603 QAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655 Q + DIL M+ KA GY ++L VHDEIV E P ++ L M Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAI 857 Query: 656 SWAKGLPLKAE 666 +PL A+ Sbjct: 858 Q--LSVPLIAD 866 >gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427] gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427] Length = 882 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 105/646 (16%), Positives = 195/646 (30%), Gaps = 147/646 (22%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSN 103 WD VL E LE+ + H+S F+ +LK L+ +A Sbjct: 349 WDLTDTEA-KAVLIEFLESATYQKIVHDSKNFKHELLKVGLGLN----GVCFDTFIAAYL 403 Query: 104 GLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR---NKPNHREAWRL 156 P L + E L ++ Q + + L+ + +T L D N R L Sbjct: 404 LHPTNKSYDLAEL-EELFINKQSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLAL 462 Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 + + + + E L + + G VD + + + Sbjct: 463 SVTEAMKEALQEQNMTRLFY---DIEMPLIDVLFDMEVEGIKVDPEGLRSYGEELQGLLD 519 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA 273 L + G + ++L LF + G+ T+T T VL + K P Sbjct: 520 TLTTSIYE-AAGESFNINSPKQLGVILFEKLGIPCAKKTKTGYSTAAEVLEALKNDYPIV 578 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 Q+ R ++ L + Sbjct: 579 AQILEYRQY-------------------------------AKLKSTYVDGL-LNVLTEQN 606 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEAR 387 + H +Q IT +++P+ I +R + S E + D + IE R Sbjct: 607 KIHSTFNQTITATGRLSSTEPNLQNIPVKFEMGKKIRQLFVPSSENHIFLDGDYSQIELR 666 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 VLA M+G+ +KAF+ D++ T ++ F+V VT QR+ K + + Y A A Sbjct: 667 VLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFEDVTSMQRSNAKAVNFGIVYGISAFA 726 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + + ++A+ + E +P Sbjct: 727 LSEDLKIS-------------------QKEAQKYIDGYFEKYP----------------- 750 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + + + + +T + ++R++P Sbjct: 751 -CIKAYLDEIIDF--AMQNGYVET-------LYHRKREIP-------------------- 780 Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------ 621 N R+ + +Q S DI+ M+ + Sbjct: 781 --------EILASNYNMREFGKRVA-----MNTPIQGTSADIIKIAMIRVHQKLKEHSLK 827 Query: 622 YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++LTVHDE++ + D E +L M +PL + Sbjct: 828 SKLILTVHDELLIDAHKDEVEIVKKLLKEEMEHAAD--LSVPLVVD 871 >gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95] gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95] Length = 896 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 103/588 (17%), Positives = 193/588 (32%), Gaps = 102/588 (17%) Query: 4 LFIDFETRSPIDLTKCGICKY-AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62 + D ET S + Y A+ V + L F+ + + L+ + + + + L Sbjct: 338 ISFDLETSS--------LDPYQADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVDLLN 389 Query: 63 NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSS 120 N V N ++ TVLK I + + ++A P + A + Sbjct: 390 NKKVI--GQNLKYDITVLKV---NGIELSKVHFDSMIAAYLLNPDSRRFNMDDLAKEYLD 444 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 K + KE++ + K T + + EY D + +F+ L+P Sbjct: 445 YKTIKYKEVMGKDIKLLTLGDIDKK----------RVVEYAGEDADIAYRLFEVLKPKLE 494 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E + + G D+ L + + + + L E++ + G Sbjct: 495 EFELFELFEKIEMSTINVLSEMEMNGVYFDLKELQKLEEEYNKKLSSLMYEMKKI-VGYD 553 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF GL + T++ T L + + P ++ R Sbjct: 554 FNPNSPKQVGELLFENLGLKGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYR------ 607 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 K + P + R H +Q T Sbjct: 608 ---KYQ----------------------KLLSTYIIAIPKLVNKKTGRVHTSFNQTGTAT 642 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ + + +RS V A + L+ AD + IE RVLA + ++ + Sbjct: 643 GRLSSSEPNLQNLPIREEDGERIRSTVKAQKDDYVLLSADYSQIELRVLAHLTNDETLIN 702 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF GED++ T A F V V + R +GKV+ +L Y +A + + Sbjct: 703 AFNNGEDIHALTAAAIFGVKIDDVDYNMRRVGKVVNFSLVYGSSPY---GLAENLKIPVE 759 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + QE+ + A + ++ T R ++ + Sbjct: 760 DAKDFMN------RYFKTYQKVKEYQESSLKIATQKGYVETIFGR-----KRFLKNIKTG 808 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 +EL + T G A K + NL LP L Sbjct: 809 KSELKRIVINTPIQGSAADIMKLAMI----------NLYKKLPKEAKL 846 >gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] Length = 879 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 94/633 (14%), Positives = 197/633 (31%), Gaps = 143/633 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALK 110 KE +++ +S R V+ ++ D+ + ++LA P + Sbjct: 358 DAFKEWVQDETKKKWVFDSK--RAVVALRWH-DVDLKGVDNDVLLASYVVNPQKSYEDVA 414 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT-R 169 +V + L+ +E + KG + H + D+T+ Sbjct: 415 SVAKEYGLNIALSDE-----KVYGKGAKQAIPPEDELKGH-LGRKAAAISALHDLTLEAL 468 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + E E L + + G VD+ + + + + + ++ + L G Sbjct: 469 EKNDQHELYEDLELPLALILGEMESLGVKVDLKRLEKMGEELTKKLKEYEETIHRLA-GE 527 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRS 286 + ++L LF + GL + T+T VL + + + R + Sbjct: 528 TFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSADVLEKLEDKHEIIRSILHYRQ-IGKL 586 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + L++ D + H +Q +T Sbjct: 587 QSTYVEGLMKVTRKD------------------------------THKVHTRFNQALTQT 616 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++DP+ I +R + S EG + AD + IE RVLA ++ ++ ++ Sbjct: 617 GRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELRVLAHISQDENLIE 676 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF D++ T F+V+ +VT R K + + Y + G+ Sbjct: 677 AFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQ---NLGITRK 733 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A + E + + + E + A + ++ T Sbjct: 734 EAAAFI------ERYLTSFKGVKTYMEEIVQEAKQKGYVTTLL----------------- 770 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 ++RR +P + + R+ + Sbjct: 771 --------------------KRRRYIPDITSRNFN---------------IKSFAERTAM 795 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 NT +Q + DI+ + M++ +++L VHDE++ Sbjct: 796 NTP------------------IQGSAADIIKKAMIDMARRLKEENLQTNLLLQVHDELIF 837 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 E P + + +M + +PLK + Sbjct: 838 EAPKEEIAILEKIVPEVMENALQ--LDVPLKVD 868 >gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg] gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg] Length = 994 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 85/539 (15%), Positives = 165/539 (30%), Gaps = 143/539 (26%) Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALA 204 + + + V I+ L L S+ E L Y + RG VD Sbjct: 561 DQYKKAACYESYVAHHIYPVLLKLLSERGLLPLFAGIEMPLVYTLYDMEQRGIRVDTNGL 620 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QR 261 + + V +L++++ L G+ + ++L LF GL T+T Sbjct: 621 KDYSDQLGVSIVELEKQIFEL-VGVEFNINSPKQLGEILFQRLGLSYGKKTKTGYSTSAE 679 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL P + R + + LV + DGR Sbjct: 680 VLEKLSSEHPVIKLILQYRQLTKLKSTYA-DGLVSYVEGDGR------------------ 720 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376 H +Q I +++P+ I + +R I +G Sbjct: 721 -------------IHGTFNQTIAATGRLSSTEPNLQNIPIRMELGRKIRKVFIPEDGYLF 767 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R+LA M+ + ++A+ +D++ T + F+ +VT QR+ K + Sbjct: 768 LDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVFHTPFDEVTSAQRSNAKAVN 827 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y + + + AE + +P Sbjct: 828 FGIVYGISSFSL---GQDLDITRKE----------------AEEYINKYFMTYP------ 862 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 +T +G ++ V +Y + Sbjct: 863 -------------------------------GVKTYLDGLIEEGKETGVVKTLYGRIRP- 890 Query: 557 NLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 +P+ + + R +N+ +Q + DI+ M+ Sbjct: 891 -----VPNLTNSNFMKRSAEERIAMNSP------------------IQGTAADIMKLAMI 927 Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL--PLKAE 666 + K ++L +HDE++ ET +++ + +M A L PL+ E Sbjct: 928 HVNQVLKERKLKSRLLLQIHDELLVETHESE---VEEVAKIMKEEMQQAASLSVPLEVE 983 >gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1] gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1] Length = 880 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 123/686 (17%), Positives = 213/686 (31%), Gaps = 160/686 (23%) Query: 9 ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 E S D G + ED L + + D ++ +L+EAL Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSDVSLLQEALFKKA 366 Query: 66 VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123 ++ F+R+ VL FN+D+P LA+ + V +L + + Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EP 177 + + + K R P + K V + ++L E Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLEHLAKKVKVLVDSEANVMQQLKANEQEEL 475 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + RG V + + L QE+ L G + + Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSPK 534 Query: 238 KLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 +L LF GL +E T+T + ++L P + V Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK----------------- 577 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 L++ ++ L + H Q +T +SDP+ Sbjct: 578 -----------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPN 625 Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D++ Sbjct: 626 LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIH 685 Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +T R F + P VT + R K + + Y G+ + T Sbjct: 686 TSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYIDT 742 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 R + N + Sbjct: 743 Y--------------------------------------------FERYPGIKNYMETVV 758 Query: 529 EQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + G + +RR +P + + R+ R R+ +N+ Sbjct: 759 REAKDKGYVETLFHRRRSLPDI--------------NSRNFNIRQF-AERTAINSP---- 799 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDE 641 +Q + DIL M+N + GY ++L VHDEIV E P+ + Sbjct: 800 --------------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEI 845 Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAE 666 L M S S +PL A+ Sbjct: 846 GAIKELVTKTMESAIS--LSVPLIAD 869 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 97/663 (14%), Positives = 213/663 (32%), Gaps = 162/663 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60 +D E+ D G+ ++ ++ F+F +++ H + L+ A Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQI--SLQSA 368 Query: 61 LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + +V + HN ++ +++ F+L++P ++ T++LA + AL Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ + + +Y D +T + Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474 Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LE PL E + + + + G +D L + + E L +E+ +L Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL+ P ++ + R + Sbjct: 535 D-RFNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYR-ELA 592 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D + SR + Q T Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC +A +G + D + IE R+LA + ++ L Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ T F + + R++ K + L Y G ++ ++ + Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 N K + + Sbjct: 737 NLA--------------------------------------------KSYIEKYFENFTS 752 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + +NG ++ SGR + Y Sbjct: 753 IKKYFEKVKNEAKQNG-----------------------FIVTLSGR----------KRY 779 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636 + + + Y + +I+Q + D++ M+ K + ++L +HDE++ E Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839 Query: 637 PDT 639 D Sbjct: 840 KDD 842 >gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20] gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains [Leuconostoc citreum KM20] Length = 893 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 100/627 (15%), Positives = 204/627 (32%), Gaps = 132/627 (21%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 L+ +EN D+ N + + K L + ++ LV + + + A Sbjct: 372 ELRAVIENGDIKKNVFNVKAQLILFKR-LGLTLKGAQFDFLLVAYLLDTTDNDNEMSTLA 430 Query: 116 LKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + E +E+ + K E L + + +A + + Sbjct: 431 QRFDVY-LTEDEEIYGKGAKYAVPDDEELVLMHLAHKADALIQLEMPA----LSALQSHQ 485 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 + + E L ++ + +G+ +D + + ++ +++ + L G + Sbjct: 486 QTHLYTEIELPLAHVLAEMEYQGFKIDRKRLQVIGEDLEARIHTIEEAIY-LEAGEKFNL 544 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + GL + T+T + +KL QA V Sbjct: 545 NSPKQLGILLFEKMGLPIIKKTKTGYSTAVDVLEKLASQAPIVE---------------- 588 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 LQ+ ++ S+ H Q +T + D Sbjct: 589 ------------HILQYRQLAKIKSTYVEGLLAVVHTEDSKIHTRFLQTLTQTGRLSSVD 636 Query: 354 PDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + S ++ AD + IE RVLA + G+Q +AF GED Sbjct: 637 PNLQNIPMRTEEGRQIRRAFVPSQPNWQIFGADYSQIELRVLAHITGDQNMQRAFLNGED 696 Query: 408 LYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T F + V R K + + Y +++ G++ + Sbjct: 697 IHAETARAVFGLDNNAPVDPLMRRTAKAVNFGIVYGISDY---GLSNNLGISRAEAKRFI 753 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 +T +++ WM + + A E ++ T Sbjct: 754 ET-----YFKEFPQIHEWMTKIKAQ-AHEQGYVET------------------------- 782 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 IA++RR +P + K + RS R+ +N+ Sbjct: 783 ------------IAKRRRYLPEIKSKNF---------NLRSFA------ERTAMNSP--- 812 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD 640 +Q + DI+ M+ A +I+L VHDE++ E P+ + Sbjct: 813 ---------------IQGSAADIIKIAMIKVADALKDNQLQANILLQVHDELIFEAPEDE 857 Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAE 666 ++ +M S A +P++ + Sbjct: 858 IETLRDIVTRVMDSAV--ALDVPMQVD 882 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 98/663 (14%), Positives = 212/663 (31%), Gaps = 162/663 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP----QV 56 +D E+ D G+ ++ ++ F+F +++ H + + Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKK 370 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 EA+ N V HN ++ +++ F+L++P ++ T++LA + AL Sbjct: 371 AIEAIFNHFVI--GHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ + + +Y D +T + Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474 Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LE PL E + + + + G +D L + + E L +E+ +L Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL+ P ++ + R + Sbjct: 535 D-RFNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYR-ELA 592 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D + SR + Q T Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC +A +G + D + IE R+LA + ++ L Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ T F + + R++ K + L Y G ++ ++ + Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 N K + + Sbjct: 737 NLA--------------------------------------------KSYIEKYFENFTS 752 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + +NG ++ SGR + Y Sbjct: 753 IKKYFEKVKNEAKQNG-----------------------FIVTLSGR----------KRY 779 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636 + + + Y + +I+Q + D++ M+ K + ++L +HDE++ E Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839 Query: 637 PDT 639 D Sbjct: 840 KDD 842 >gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] Length = 881 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 117/666 (17%), Positives = 219/666 (32%), Gaps = 162/666 (24%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFER-TVLKACFNLD 87 +I FA+G +L+ ++ + KE LE T + + F+R VL + + Sbjct: 338 IIGFAWGTKG---QLYVSTDTGLLQTPIFKEFLEKTPLKVY----DFKRAKVLLSHLGIT 390 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + LA+ + L SQ E++ + KG Sbjct: 391 L--QNPAFDSRLAKYLLSTVEDNEISTIASLYSQITLPLDEVV--YGKGAKKII------ 440 Query: 148 PNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 P + + +L+ L EQ L + + G V+ Sbjct: 441 PEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVER 500 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTC 259 + + +L QE+ L G + ++L LF + L LE T+T Sbjct: 501 QTLQDMQVENEAVLERLTQEIYELA-GEEFNINSPKQLGVILFEKLELPLEYTKKTKTGY 559 Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 VL + P ++ R A + + L + + DG++ Sbjct: 560 STAVDVLERLAPIAPIVSKILEYRQIAKIQSTY-VIGLQDWILEDGKI------------ 606 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 H Q +T + DP+ I +R + Sbjct: 607 -------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPE 647 Query: 372 E-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429 E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P VT + R Sbjct: 648 EVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDR 707 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +++ G++ ++T Sbjct: 708 RNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIETYF------------------- 745 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPL 548 R + + + + + + G + ++RR++P Sbjct: 746 -------------------------ERYPGIKDYMERVVREARDKGYVETLFKRRREIPD 780 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + R+ R R+ +N+ +Q + D Sbjct: 781 I--------------NSRNFNVRGF-AERTAINSP------------------IQGSAAD 807 Query: 609 ILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNA--SMLYHLMTSNPSWAKG 660 IL M++ +A ++L VHDEIV + P TDE A +++ M S A Sbjct: 808 ILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVP-TDELAAIKALVKETMESAIELA-- 864 Query: 661 LPLKAE 666 +PL+A+ Sbjct: 865 VPLEAD 870 >gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613] Length = 875 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 103/669 (15%), Positives = 208/669 (31%), Gaps = 161/669 (24%) Query: 21 ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68 + Y E ++LF+ + V D +V +E E+ ++ Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESKEIKK 385 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + +++ RT+L+ L I + + LA P + E L+S+ + + Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLINPVRKEY--EISSLASEYLFKNIN 440 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 F K + + +++ E +++ + L + EQ L Sbjct: 441 REDEFLKIKEVNIM--------PNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ VD + L + E E+ S++ + ++L LF + Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + P ++ R + + L A++ DG++ Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 +Q +T +++P+ I Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631 Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT R+ K + + Y G + + + + E + + Sbjct: 692 PIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + EN E A + + + TI N Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVSTILN----- 767 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 +RR + V R +N+ Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794 Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 +Q + DI+ M+N + I+L VHDE++ + E +++ M Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEME 852 Query: 653 SNPSWAKGL 661 GL Sbjct: 853 QVLELKVGL 861 >gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] Length = 861 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 108/562 (19%), Positives = 179/562 (31%), Gaps = 139/562 (24%) Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT-REIFKRLE------PLSS 180 EL A E +R + + + E V R + RL L Sbjct: 404 ELAAYLLSPEERNYSLERIRDGLGDEIDVHRENHGQAVLAVGRLLHARLAGSELLGLLQD 463 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + + RG +D A H +V E +L + + G + R ++L Sbjct: 464 LELPLTEVLVRMQKRGIRIDAARFHDFLGMVQAELDRLTRTIHEQA-GEEFNIRSSQQLA 522 Query: 241 TWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF GL ++T VL P V RM + L + + Sbjct: 523 EVLFSRLGLACKQKTPGGAQSTSSSVLEGLAAEHPIVADVLEFRMYEKLRSTY-LEPMPQ 581 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + +GR+ H +Q+ T +S+P+ Sbjct: 582 LADKNGRI-------------------------------HTTFNQLATATGRLSSSNPNL 610 Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I + +RSC +AS G +LV AD + IE RVLA M+G+Q +AF G+D++ Sbjct: 611 QNIPIRGALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHAR 670 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F+ +V+ D+R K + L Sbjct: 671 TAGILFDTT--EVSADERRKAKTINFGLL------------------------------- 697 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + E + + K SRV E + E+ + + Sbjct: 698 -------------YGMGPQKLGRELGISLKEAKEFIAVYFSKLSRVREFYEEIEAGAK-S 743 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + + R+R MLP S NT Q R Sbjct: 744 LGYVTTLAGRRR-----------------MLPEINS------------RNTNMAQQARRM 774 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA- 644 +VQ + DI+ + M+ K+ G ++L +HDE++ E P Sbjct: 775 A-----INTVVQGSAADIIKKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVG 829 Query: 645 SMLYHLMTSNPSWAKGLPLKAE 666 + +M S ++ +PL + Sbjct: 830 EAVAGIMASV--YSLSVPLVVD 849 >gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342] Length = 882 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 92/626 (14%), Positives = 189/626 (30%), Gaps = 154/626 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ L I + L +N + ++ V Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + +E + + K + P E +F + + + + Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465 Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L L+ K E L + + G VD + ++++++ Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 + G + ++L LF + GL + T+T VL K+ P + R Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + L++ + D ++ H Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R + E + +D + IE RVLA ++ Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF G+D++ +T R F V VT + R K + + Y Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSP--- 729 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + T +K Sbjct: 730 KLGITRKQAQQYIDTYF-----------------------------------------EK 748 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + E+ + + + + +RR + + + R+ R Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DIL M+ K ++L Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833 Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652 VHDE+V E P+++ + L +M Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859 >gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740] gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes] Length = 898 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 107/597 (17%), Positives = 195/597 (32%), Gaps = 97/597 (16%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----PV-ELWDCVHDPVMPQVLKEA 60 D ET S L ++ F+F + PV + D V + + A Sbjct: 334 DTETDS---LETR-------SAKLVGFSFSLEGEVGYYVPVAHSYLGAGDQVSLEEARGA 383 Query: 61 LENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 +E +V HN F+ +L P R +++LA + + + + Sbjct: 384 IEKIFSAQVVGHNLKFDLEILHGALGF-YPKGRIGDSMILAWLLDSGAPVGLDFQMKRWF 442 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 +M ++++ + + + A EY D T ++ RLE Sbjct: 443 GHEMIPFEKMVK-------------KGETFAQVALEEAAEYAGEDALATYRLYFRLEEEL 489 Query: 180 SK-------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 K E + + +RG VD LN V+V +L E+ + Sbjct: 490 KKRGCESLLGLAESLEFPFIHTLIEMEERGIRVDTEFFARLNAEVEVRIRELSGEVFAHA 549 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF + L T+T ++VLS + P + R Sbjct: 550 GG-EFNLNSTQQLGGVLFEKLHLPSGKKTKTGYSTDEKVLSELLGVHPIIEPILEYR-EL 607 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L D + R + Sbjct: 608 FKLKSTYIEPLTRFALQD-----------------------------KNRRIYTSFLHTG 638 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T + +P+ I +R IASEG L+ D + IE R+LA + + Sbjct: 639 TSTGRLSSKNPNLQNIPVKTEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPAL 698 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF+ G D++ T + F + K R I K + L Y G+ +K++ T ++ Sbjct: 699 VAAFKAGADIHYETAKKIFG---EREAKAHRGIAKTINFGLIYGMGS---RKLSETLRIS 752 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + A + ++F + E A+E + T R + Q+ Sbjct: 753 PKEAKGYIDSYFAS--FPTVKSFLK----AQEEFALEHGYTETLLGRRRYFEFQQAPEYQ 806 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + L +A I G A K + + +L L+L L++ Sbjct: 807 KA-AYLREAV-NCIFQGSAADLIKLAMNEIRRRFAQEESLWLLLQVHDELIFEAPKE 861 >gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] Length = 848 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 92/626 (14%), Positives = 191/626 (30%), Gaps = 154/626 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ L I + L +N + ++ V Sbjct: 326 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 385 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + +E + + K + P E +F + + + + Sbjct: 386 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 431 Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L L+ K E L + + G VD + ++++++ Sbjct: 432 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 491 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 + G + ++L LF + GL + T+T VL K+ P + R Sbjct: 492 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 550 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + L++ + D ++ H Sbjct: 551 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 578 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R + E + +D + IE RVLA ++ Sbjct: 579 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 638 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF G+D++ +T R F V VT + R K + + Y + Sbjct: 639 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ--- 695 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + T + +K Sbjct: 696 NLGITRKQAQQYIDT-----------------------------------------YFEK 714 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + E+ + + + + +RR + + + R+ R Sbjct: 715 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 758 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DIL M+ K ++L Sbjct: 759 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 799 Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652 VHDE+V E P+++ + L +M Sbjct: 800 VHDELVFEVPESELEQLNQLVKEVME 825 >gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4] gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4] Length = 887 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 96/660 (14%), Positives = 210/660 (31%), Gaps = 151/660 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVM--PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 F G+ D + V+ K ++ + ++ LK ++ I Sbjct: 342 FCIGWGDD--QQIYVAEPEVVFASDDFKNWAKDKEAQKQVFDAKRTYVALKRQ---NVDI 396 Query: 91 HRWICTLVLARSN----GLPSALKAVGEALKLSSQKMEEGKELIARFCK---GETHECLY 143 ++LA L V + +E + + K E +Y Sbjct: 397 ASIDFDILLASYLLNTKDNSKDLSEVATEHEYYEVSSDES--VYGKGAKIAIPEEKTIIY 454 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 D + +A R+ + + E ++ + + E L + + G V+ Sbjct: 455 D-HIARKIKAIRILSKQLGEN----LEKNEQTKLFNEMELPLSMVLAEMELTGVKVNDKR 509 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-- 261 + + + T ++Q + L G + ++L LF + G + T+T Sbjct: 510 LMEMKEEFAIRLTDIEQRVYELA-GEKFNLNSPKQLGVILFEKMGYPVIKKTKTGYSTAV 568 Query: 262 -VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL ++ P + + R A + + L++ ++ Sbjct: 569 DVLEQLREQAPIVEHILDYRQIAKIQSTY-IEGLLKVIDK-------------------- 607 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGK 374 + + H Q I + DP+ I +R + S EG Sbjct: 608 ----------KTGKIHTRYMQTIAQTGRLSSVDPNLQNIPIRLEEGRKIRQAFVPSHEGW 657 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGK 433 ++ +D + IE RVL ++ ++ +AF G+D++ +T + F + +P +V+ + R K Sbjct: 658 EIFASDYSQIELRVLGHVSDDKLLKEAFIEGQDIHSSTAMQVFGIGSPEEVSSEMRRRAK 717 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + G++ H + T Sbjct: 718 AVNFGIVYGISDYGLSQ---NLGISRKEAQHFIDTYF----------------------- 751 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 +K+ V ++ + + + + ++RR +P + Sbjct: 752 ------------------EKYPGVKTYMEDIVREAKD--KGFVETLFQRRRYLPEI---- 787 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + R+ R R+ +NT +Q + DI+ Sbjct: 788 ----------NSRNFNLRSF-AERTAINTP------------------IQGSAADIIKIA 818 Query: 614 MMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 M+ + ++L VHDE++ E P + E +++ +M +PLK + Sbjct: 819 MIKMDQKLKESTMKATMLLQVHDELIFEAPKEEIEQLRALVVEVMEGAVE--LSVPLKVD 876 >gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] Length = 905 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 92/563 (16%), Positives = 196/563 (34%), Gaps = 65/563 (11%) Query: 37 FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96 FD PV + DC + + ++E +N + IV +N LK N I + Sbjct: 376 FDPTPV-VEDC---EINCKEIQEFFDNYNGEIVTYN-------LKNILNRGISVKNCKLD 424 Query: 97 LVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLYDRNKPNHREAW 154 +++A + V +L + + E +F K + + Sbjct: 425 MMIAYHLISSQTKENV----ELPIEHLTGIELDNYADKFGKEKPENISAKEYGKYLCQ-- 478 Query: 155 RLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 R G D+ E ++ L+ E L + ++ +G +D + + Sbjct: 479 RTMGLLECYDILKEELEDRNLMKVLNEIEMPLIEILSSMEIKGIKIDPEYFSNYEKELGD 538 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 KL +++ G + ++L LF + L T+T +KL Sbjct: 539 LIEKLQEKIYEEA-GEEFNINSPKQLAEILFFKLNLPPVKKTKTGLSTDEEVLEKLKVDG 597 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 ++ L++ ++ P Sbjct: 598 AEIAK---------------------------AILEYRKLAKLKNTYVDAIPKLRD-EKD 629 Query: 334 RSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARV 388 R H +QI T +SDP+ I +R +A + L+ D + IE RV Sbjct: 630 RVHTTFNQIGTTTGRLSSSDPNLQNIPVKTDEGIKIRQGFVAEKNSVLMGIDYSQIELRV 689 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKA 447 LA ++G++ +A++ DL+ T + F + +V++++R I K + ++ Y A Sbjct: 690 LAQLSGDENLREAYQNSMDLHSLTARKIFELSDEEEVSREERIIAKTINFSIIYGKTAF- 748 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 +A G++ + + ++ + F + + E +H + F G + Sbjct: 749 --GLAKELGISQKEASEYID--RYFNQYPKVKGFEKEIVEFTEKHGYTETFFGR-----R 799 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + +S+ + ++ + ++ G A K+ + + KD++ + L+L Sbjct: 800 RLIDGINSKNKNIKSQAERMAVNSVIQGTAAEIIKKVMIEIYKYIKDRDGISLLLQVHDE 859 Query: 568 LVYRDVGNNRSYLNTTTRQLTRE 590 L++ ++ RE Sbjct: 860 LIFEIEKEKLEMYREDIEKIMRE 882 >gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025] gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025] Length = 878 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 91/514 (17%), Positives = 173/514 (33%), Gaps = 135/514 (26%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +L+ L E L + + G V + + ++E L QE+ L G + Sbjct: 469 DQLDLLFEMELPLANVLAKMEIAGISVRKETLQDMERANEIELQALTQEIYDLA-GEAFN 527 Query: 233 SRCLEKLKTWLFLETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L LF + GL L T+T VL +P ++ R A + Sbjct: 528 INSPKQLGVILFEKLGLPLSATKKTKTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQS 587 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L ++++ DG++ H Q +T Sbjct: 588 TY-IIGLQDSISFDGKI-------------------------------HTRYLQDLTQTG 615 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R + + L+ +D + IE RVLA ++G++ + A Sbjct: 616 RLSSVDPNLQNIPVRLEQGRLIRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEHLIAA 675 Query: 402 FETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F+ G D++ +T R F + P VT + R K + + Y +A+ G++ Sbjct: 676 FKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDF---GLANNLGISRK 732 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + ++T R + Sbjct: 733 AAKNYIETYF--------------------------------------------ERYPGI 748 Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 N + + + + G + +RR++P + + + RS R+ Sbjct: 749 KNYMDRVVREARDKGYVETLFHRRRELPDINSRNF---------NIRSFA------ERTA 793 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIV 633 +N+ +Q + DIL M++ +A ++L VHDEIV Sbjct: 794 INSP------------------IQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIV 835 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P+ + E ++ M S +PL A+ Sbjct: 836 LEVPNAELEAIQKLVKETMESAIE--LSVPLVAD 867 >gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302] Length = 882 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 92/626 (14%), Positives = 191/626 (30%), Gaps = 154/626 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ L I + L +N + ++ V Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 419 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + +E + + K + P E +F + + + + Sbjct: 420 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 465 Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L L+ K E L + + G VD + ++++++ Sbjct: 466 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 525 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 + G + ++L LF + GL + T+T VL K+ P + R Sbjct: 526 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 584 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + L++ + D ++ H Sbjct: 585 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 612 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R + E + +D + IE RVLA ++ Sbjct: 613 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 672 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF G+D++ +T R F V VT + R K + + Y + Sbjct: 673 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVYGISDYGLSQ--- 729 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + T + +K Sbjct: 730 NLGITRKQAQQYIDT-----------------------------------------YFEK 748 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + E+ + + + + +RR + + + R+ R Sbjct: 749 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 792 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DIL M+ K ++L Sbjct: 793 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 833 Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652 VHDE+V E P+++ + L +M Sbjct: 834 VHDELVFEVPESELEQLNQLVKEVME 859 >gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14] Length = 878 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 95/514 (18%), Positives = 171/514 (33%), Gaps = 135/514 (26%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 ++L+ L E L + + G V+ + +V +L +E+ L G + Sbjct: 469 QQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELA-GQEFN 527 Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 ++L LF E GL LE T+T VL + P ++ R + Sbjct: 528 INSPKQLGIILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQS 587 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L +A+ DG + H Q +T Sbjct: 588 TY-VVGLQDAILEDG-------------------------------KIHTRYVQDLTQTG 615 Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 ++DP+ I +R + S E L+ +D + IE RVLA ++ ++ ++A Sbjct: 616 RLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEA 675 Query: 402 FETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F+ G D++ +T R F + VT + R K + + Y +++ G+ Sbjct: 676 FQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDF---GLSNNLGITRK 732 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T R + Sbjct: 733 EAKAYIDTYF--------------------------------------------ERFPGI 748 Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 N + + + G I ++RR++P + + R+ R+ R+ Sbjct: 749 KNYMETIVREARDKGYVETIYKRRRELPDI--------------NSRNFNVRNF-AERTA 793 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 +N+ +Q + DIL M+N KA ++L VHDEIV Sbjct: 794 INSP------------------IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835 Query: 634 CETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + E +M+ M S S +PL + Sbjct: 836 LEVPVAELETVKAMVKETMESAIS--LSVPLIVD 867 >gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] Length = 929 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 86/658 (13%), Positives = 182/658 (27%), Gaps = 162/658 (24%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 V A + + + +V++ AL + V H++ KA + Sbjct: 405 TPQVTSVALSSREGAARAVELKGESG--EVVRRALADPTVPKAVHDA-------KAAMHA 455 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146 +P+ +L P+ +L + Sbjct: 456 GLPLESVEHDTMLYEYLLDPTY-----TTYRLPDVVL-------------RRLNLKLAGT 497 Query: 147 KPNHREAWRLFGEYCKGDVT--VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 P + V ++++ ++ L + + G +D + Sbjct: 498 LPEAADMTHRLTTKLHKLVEDGGLMKVYE------DIDRPLVTVLYAMEAAGVKLDCDVL 551 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTC 259 ++ + + L +++ L+ G + ++L LF + L T +T Sbjct: 552 AEMSTRLQRDADALARKIYGLS-GQEFNINSPKQLGDVLFNKLNLPKPVKYGKGKTISTA 610 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL V R ++ Sbjct: 611 VDVLEGLAGEHEVPKLVLEYRQ-------------------------------FTKLKST 639 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGK 374 P R H Q T + +P+ I + +R+ +A +G Sbjct: 640 YVDALPNLCHAGTGRLHTTFAQAATSTGRLSSVNPNLQNIPIRTELGREIRAAFVAEKGN 699 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ AD + IE R+LA + ++ + A+ D++ T + F V P + + R K Sbjct: 700 VLLAADYSQIELRLLAHFSQDRLLVDAYNNDRDIHALTASEVFGVPPMMIDAEHRRRAKA 759 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y + G++ +++ + + + R + E Sbjct: 760 VNFGIVYGISPFGLSQ---QLGIDTKESKRYIES------YFERYSGVREWLNSVLEQVR 810 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 +D + + + + R +P ++ + Sbjct: 811 KDEKV-------------------------------------STLFGRIRPIPDIHSRN- 832 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 P+ R R+ NT Q + D++ M Sbjct: 833 --------PNLRGFA------ERTATNTPL------------------QGTAADLIKLAM 860 Query: 615 MNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + K ++L VHDE+V E P + L N +PLK + Sbjct: 861 IRIHRDLIERKLKTRMLLQVHDELVFEVPQAEVEEVRALVQDRMENVHPELTVPLKVD 918 >gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] Length = 919 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 89/516 (17%), Positives = 153/516 (29%), Gaps = 130/516 (25%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 E LE E L + + G +D A V + +L + L G Sbjct: 505 MEKDGLLELFRRLEMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQLDQLTAHVYELA-G 563 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + R ++L LF GL T+ +T Q+ L P + Sbjct: 564 TQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQHPVVDSIL------- 616 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 Q+ + P P+ R H +Q T Sbjct: 617 ------------------------QYRKLEKMRSTYLDPLPRLVDPQ-GRIHTTFNQKAT 651 Query: 345 HLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I + +RSC IA G+ LV AD + +E RVLA ++ + L Sbjct: 652 ATGRLSSSNPNLQNIPVRGPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALL 711 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T A +++ P QV+ DQR K + L G+ Sbjct: 712 EAFRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFGLI--------------YGMGA 757 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 A +K + T + + ++ + E Sbjct: 758 QKLAQELKIS------------------------------TTQAKDFIARYFERLQGLKE 787 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + + +LP S + R Sbjct: 788 FYEGVEASARK------------------HGFVTTLGGRRRLLPDINSASGQAAALARRQ 829 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIV 633 ++Q + DI+ M+ + ++L VHDE++ Sbjct: 830 A-----------------INTVIQGSAADIIKLAMLAVARDERLRELDARLLLQVHDELL 872 Query: 634 CETPDTDEFNASMLYHLMTSNPSWA---KGLPLKAE 666 E P A L + + A +PL + Sbjct: 873 LEVPADAAEEAGALVARLMQDVCPAGKELSVPLLVD 908 >gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1] Length = 892 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 101/621 (16%), Positives = 181/621 (29%), Gaps = 144/621 (23%) Query: 51 PVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP- 106 + P+ K L + + H++ ++A + C LA P Sbjct: 366 ELDPEDEKSFAAWLADNECPKAMHSAK---GPVEALAGRGWEVAGLTCDTELASYLLHPD 422 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GD 164 + K + + EG+E + + + D + E+ K D Sbjct: 423 RRSHKFDDAVRTHLNLTLGEGEE--------NSDQAMLDFGNDSSAESMERAVAVTKLAD 474 Query: 165 V-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V E E L E + ++ G VD + L D T+ Sbjct: 475 VMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAW 534 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L+ LF + + T++ + L + F + Sbjct: 535 E-AAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLE 593 Query: 284 SRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R A+ ++ L++ + DGR+ T Sbjct: 594 HRDAIKLRQTVDGLLKEIRDDGRVHTT-------------------------------YM 622 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 Q I + DP+ I +R + EG + L+ AD + IE R++A ++G Sbjct: 623 QTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSG 682 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF +G+D + T + F VAP V+ QR+ K M L Y A Sbjct: 683 DQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKV 742 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + K+ Sbjct: 743 S-----------------------------------------------VGEAKELMAGYF 755 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++ L + +Q G RR LP Sbjct: 756 SRFGKVHEYLEEVVDQARRQGYTETLLGRRRY---------------LPDL--------- 791 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTV 628 T+T + R+ L I Q + D++ M+ + ++L V Sbjct: 792 -------TSTNRQRRDMAERAALNAPI-QGSAADLIKLAMVATDQKLAEAGLTSRVLLQV 843 Query: 629 HDEIVCETPDTDEFNASMLYH 649 HDE++ E +E + Sbjct: 844 HDELILEVTKDEEEKVRQIVT 864 >gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1] gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1] Length = 946 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 95/536 (17%), Positives = 170/536 (31%), Gaps = 83/536 (15%) Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121 E+ V V N ++ VL I + T+V++ L A Sbjct: 421 EDDSVLKVFQNGKYDLNVLARV---GIDVSPIEDTMVMSF------DLDAGRGEGMGGGH 471 Query: 122 KMEEGKELIARFCKGETHE---CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 M+E E K + + P EY D VT +++ L+P Sbjct: 472 GMDELSER-HLLHKPLAFKDVCGTGKKAIPFGEVPLDRATEYAAEDADVTLRLYRMLKPR 530 Query: 179 SSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 S+E + L + + G VD A L++ L++E+ + G Sbjct: 531 LSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARLAKLSEEFATTTASLEKEIHEIA-G 589 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDL-------TETTCQRVLSSNKKLTPQAIQVFNNRM 281 + ++L LF + G T+ + L+ ++ P A +V R Sbjct: 590 QQFAVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQSVLENLAKDEAAKPIADKVLEWR- 648 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 S+ Q P R H Sbjct: 649 ------------------------------HLSKLKSTYTDALQAQINPETGRVHTSYSL 678 Query: 342 IITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 + ++DP+ I I +R + +G L+ AD + IE R+ A MA Sbjct: 679 VGAQTGRLSSTDPNLQNIPIRTEIGRTIREAFVPEDGNVLLAADYSQIELRLAAHMADVD 738 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF GED++ T F +VT+D RA K + A+ Y +A Sbjct: 739 TLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGIS---RWGLAGRLE 791 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + ++ T + + + + E E + G K + + S+ Sbjct: 792 VEPDEAQDMIDT--YFQRFPGIQRYIMETLETVRERGYSETLFGR-----KTWFPRITSK 844 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK--NNLILMLPSGRSLVY 570 +A G + KR ++ +D+ N+ ++L LV+ Sbjct: 845 NQAERQGSERAAINAPIQGTSADIIKRAMARMLPALRDEGLGNVRMLLQVHDELVF 900 Score = 61.3 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 18/189 (9%) Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ-TIENGKAIIARKRRDVPLVYMKK 553 ED+ TA E + R +R + + + + + + +D+ Y ++ Sbjct: 748 EDIHARTATEMFGEVTRDTRARAKTINFAILYGISRWGLAGRLEVEPDEAQDMIDTYFQR 807 Query: 554 DKNN---LILMLPSGRSLVYRDVGNNR---SYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 ++ L + R Y + R T+ Q R+ + + I Q S Sbjct: 808 FPGIQRYIMETLETVRERGYSETLFGRKTWFPRITSKNQAERQGSERAAINAPI-QGTSA 866 Query: 608 DILAEGMMNA------TKAGY-DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSW 657 DI+ M G ++L VHDE+V E PD D E + ++ +M P+ Sbjct: 867 DIIKRAMARMLPALRDEGLGNVRMLLQVHDELVFELPDGDVEKASPIIERVMAEAALPAV 926 Query: 658 AKGLPLKAE 666 + +PL + Sbjct: 927 SLDVPLAVD 935 >gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC] gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC] Length = 869 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 72/583 (12%) Query: 28 VCVILFAFGF-DDHPVELWDCVH--DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 + L D V D H D V+ L+ D T +N + LK Sbjct: 324 PSLTLMGVALASDDDVYYVDIEHALDDVLTP-LQYFFRREDTTFYGYNIKRDNHALKNA- 381 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIARFCKGETHECLY 143 + +A L L G + + M+ G R+ K L Sbjct: 382 GIH--------VHNIALDLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKEWGQLSLP 433 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------PLSSKEQELWYLDQTINDRGY 197 P + + FG + + + + + L+ + E L + TI G Sbjct: 434 IAKSPANPAQY--FGGFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERNGM 491 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +DV L +I+ E L ++ +L G + + ++L L+ + GL D + Sbjct: 492 PLDVEDLQELERILSEELAMLTDDIYTLA-GAPFNIKSPKQLSEVLYNKLGLKPIDKARS 550 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + ++ F + Sbjct: 551 TKAEVLEALSGEHEIIEKILA-------------------------------FRAVEKLL 579 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-AS 371 P Q P SR H +Q+ T DP+ I +R Sbjct: 580 STYVKALPRQVDPSTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCNTH 639 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 + + AD + IE R LA ++ ++ AFE+ ED++ T ++ F+V +VTK QR Sbjct: 640 QNNYFLSADYSQIELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQ 699 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y A ++ ++++ L+ + + + F E Sbjct: 700 AKTVNFGIIYGQQAY---GLSKILKISVSEAQKLIDA--YFDRYPEVARFINETVSQACE 754 Query: 492 HAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + +G ER+ W + +SR + A I+ A + + Sbjct: 755 NLRVKTLLGR--ERIIDNWTEFSNSRAAS----GRLAVNTRIQGSAAELIKLAMLQLSDA 808 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 ++K K ++L L++ + + T R + Sbjct: 809 LEKRKLKSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAMI 851 >gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus Y714s Mutant Bound To G:t Mismatch Length = 580 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 85/544 (15%), Positives = 162/544 (29%), Gaps = 129/544 (23%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195 R P+ + R L L EQ L + + Sbjct: 136 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFA 195 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G VD + + + + ++Q + L G + ++L LF + L + T Sbjct: 196 GVKVDTKRLEQMGKELAEQLGTVEQRIYELA-GQEFNINSPKQLGVILFEKLQLPVLKKT 254 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T +KL P + +VE L + + Sbjct: 255 KTGYSTSADVLEKLAP-------------------YHEIVE---------NILHYRQLGK 286 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 P + H +Q +T +++P+ I +R + Sbjct: 287 LQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVP 346 Query: 371 SE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 SE + AD + IE RVLA +A + ++AF D++ T F V+ +VT + R Sbjct: 347 SESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMR 406 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + +A ++ A + E + ++ + EN Sbjct: 407 RQAKAVNFGIVSGISDY---GLAQNLNISRKEAAEFI------ERYFESFPGVKRYMENI 457 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 + A + ++ T +RR +P + Sbjct: 458 VQEAKQKGYVTTLL-------------------------------------HRRRYLPDI 480 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 R+ R R +NT +Q + DI Sbjct: 481 TS--------------RNFNVRSF-AERMAMNTP------------------IQGSAADI 507 Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662 + + M++ + ++L VHDE++ E P + L +M + +P Sbjct: 508 IKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVP 565 Query: 663 LKAE 666 LK + Sbjct: 566 LKVD 569 >gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322] gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322] Length = 837 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 92/626 (14%), Positives = 191/626 (30%), Gaps = 154/626 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ L I + L +N + ++ V Sbjct: 315 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVA 374 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + +E + + K + P E +F + + + + Sbjct: 375 QHYGYDAIQSDE--AIYGKGAK---------KGLPEDEE---VFFGHLARKIKAIQFLTS 420 Query: 174 RL-EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +L L+ K E L + + G VD + ++++++ Sbjct: 421 KLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 480 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 + G + ++L LF + GL + T+T VL K+ P + R Sbjct: 481 AEA-GEEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 539 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + L++ + D ++ H Sbjct: 540 QIAKIQSTY-VEGLLKVIQPDNKI-------------------------------HTRYV 567 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R + E + +D + IE RVLA ++ Sbjct: 568 QTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISN 627 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF G+D++ +T R F V VT + R K + + Y + Sbjct: 628 DEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQY-- 685 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + T + +K Sbjct: 686 -LGITRKQAQQYIDT-----------------------------------------YFEK 703 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 + V + E+ + + + + +RR + + + R+ R Sbjct: 704 YPGVKQYMEEIVRDAKD--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF 747 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627 R+ +NT +Q + DIL M+ K ++L Sbjct: 748 -AERTAINTP------------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQ 788 Query: 628 VHDEIVCETPDTDEFNASML-YHLMT 652 VHDE+V E P+++ + L +M Sbjct: 789 VHDELVFEVPESELEQLNQLVKEVME 814 >gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916] gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916] Length = 875 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 104/669 (15%), Positives = 208/669 (31%), Gaps = 161/669 (24%) Query: 21 ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68 + Y E ++LF+ + V D +V KE E+ ++ Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFESKEIKK 385 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + +++ RT+L+ L I + + LA P + E L+S+ + + Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 F K + + +++ E +++ + L + EQ L Sbjct: 441 REDEFLKIKEVNIM--------PNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ VD + L + E E+ S++ + ++L LF + Sbjct: 485 LSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + P ++ R + + L A++ DG++ Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 +Q +T +++P+ I Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631 Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT R+ K + + Y G + + + + E + + Sbjct: 692 PIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + EN E A + + + TI N Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVSTILN----- 767 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 +RR + V R +N+ Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794 Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 +Q + DI+ M+N + I+L VHDE++ + E +++ M Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEME 852 Query: 653 SNPSWAKGL 661 GL Sbjct: 853 QVLELKVGL 861 >gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] Length = 878 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 100/553 (18%), Positives = 170/553 (30%), Gaps = 142/553 (25%) Query: 118 LSSQKMEEGKELIARFC-KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-EIFKRL 175 L S+K GK+ + F ET L+ A++ Y GD+ + R E + Sbjct: 425 LPSEKELVGKDELNLFSFTNETFRKLF---------AYKALIPYLAGDLLMERLEKQEMF 475 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + E Y + RG VD + + +L E+ G + Sbjct: 476 TLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKLQSRIDELHTEIIGYA-GKEFNINS 534 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF + GL T+T VL K P + R ++ Sbjct: 535 PKQLGVILFEDMGLSGGKKTKTGYSTSVDVLEKIKNDHPIIPAILEYRQLTKLNSTYA-Q 593 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L ++ DGR+ H +Q IT ++ Sbjct: 594 GLTAYISEDGRI-------------------------------HGTFNQTITATGRISST 622 Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 DP+ I + +R I +G V AD + IE RVLA ++ +Q AF D Sbjct: 623 DPNLQNIPMKLELGRLIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAFLNHVD 682 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ TT + F+V QVT QR K + + Y A + G++ Sbjct: 683 IHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVYGISAFGLSE---DLGISRK------- 732 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 +A ++ + + L + Sbjct: 733 ---------EAADYIEKYFATYK-------------------------NIKSF---LDRQ 755 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQ 586 E+ +G R I +P RS + R +N+ Sbjct: 756 VEEAKADGVVRTMFGR---------------IRPVPELRSSNFMTRSFGERVAMNSP--- 797 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGY--DIVLTVHDEIVCETPDTD 640 +Q + DI+ M K G ++L +HDE++ ET + Sbjct: 798 ---------------IQGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDELLVETAKDE 842 Query: 641 EFNASMLYHLMTS 653 ++ +M Sbjct: 843 ---VDIVKEIMEK 852 >gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] Length = 872 Score = 233 bits (595), Expect = 7e-59, Method: Composition-based stats. Identities = 86/557 (15%), Positives = 165/557 (29%), Gaps = 126/557 (22%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL----------EPL 178 L+ K + E + E E V + ++ +L E Sbjct: 409 LLRPSAKEQDLESILTDQLQMELEKTESEAETEVQQVRILFKLQDKLTDKLADKGLMELF 468 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L + + G VD + L+ ++ + L L G + ++ Sbjct: 469 IDVELPLIPILAQMELNGIAVDQDMIQELSNKLEEKLDSLRSRAYELA-GEEFNLNSPKQ 527 Query: 239 LKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L LF + GL + T+T VL + + R K Sbjct: 528 LGEILFEKLGLPVIKRTKTGYSTSASVLEKLEDKHEIVPLILEYR---------KYQ--- 575 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + P P+ R H +Q++T +++P+ Sbjct: 576 -------------------KLKSTYVDPLPDLINPKTERIHTSFNQLVTATGRLSSTEPN 616 Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R +A E K+L+ D + IE RVLA ++ ++ + A+ G+D++ Sbjct: 617 LQNIPIRTEEGRRIRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHT 676 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T A F + ++V+ QR K + + Y +A ++ + Sbjct: 677 KTAAEVFGLEASEVSYQQRRRAKAINFGIAYGISP---WGLAKDINVSKQEAEDYINQYL 733 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + ++ + A E+ ++ T R ++ + +S + + Sbjct: 734 NRYPK------VKEYMDHQIKQAKEEGYVTTILNR-RRYLPEINSSNYHRRSFGERMAIN 786 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 T G A + ML S R L R++ Sbjct: 787 TPIQGSAA----------------DIMKLAMLESARVLDERELDTK-------------- 816 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC-ETPDTDEFNASMLYH 649 I+L VHDE++ P+ E ++ Sbjct: 817 ---------------------------------ILLQVHDELIFEVPPEELEEVQQVIKA 843 Query: 650 LMTSNPSWAKGLPLKAE 666 M +PLK + Sbjct: 844 EMEDVIE--LDVPLKVD 858 >gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae] Length = 907 Score = 233 bits (595), Expect = 7e-59, Method: Composition-based stats. Identities = 95/633 (15%), Positives = 185/633 (29%), Gaps = 152/633 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118 L + D H + + + LA P + +L+ Sbjct: 386 LADPDNPKALHEAKL---AMHDLAGRGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRY 442 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-------TVTREI 171 +++ E + N + V ++ Sbjct: 443 LRRELRAET--------PEQEQFSLLDNVDEVDKQAIQTLILRARAVVDLAAALDAELDL 494 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L E + + + G D+ L L + + ++ G Sbjct: 495 IDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGDQIRDAAEAAYAVI-GKQI 553 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV--- 288 + ++L+ LF E G+ T+T + + L + F + R Sbjct: 554 NLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKTEHPFLQHLLTHRDVTRLK 613 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + ++ L+ A+ +DGR+ T +Q I Sbjct: 614 VTVDGLLNAVAADGRIHTT-------------------------------FNQTIATTGR 642 Query: 349 SITSDPDPLQII-----SDCVRSCVIAS----EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I +R + +L+ AD + IE R++A ++ ++ + Sbjct: 643 LSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLI 702 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF TGEDL+ +R+F + +T + R K M L Y A +A+ ++ Sbjct: 703 EAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAY---GLATQLKIST 759 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 K Q +R Sbjct: 760 EEA--------------------------------------------KLQMEQYFARFGG 775 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + L EQ ++G RR LP Sbjct: 776 VRDYLMDVVEQARKDGYTSTVLGRRRY---------------LPE--------------- 805 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 L+++ RQ+ RE L I Q + DI+ M+ K+ ++L VHDE++ Sbjct: 806 LDSSNRQI-REAAERAALNAPI-QGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELL 863 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 E + + M S ++ +PL+ Sbjct: 864 FEVAIGEREQIEAMVREQMGS--AYPLDVPLEV 894 >gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2] gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3] Length = 883 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 101/621 (16%), Positives = 181/621 (29%), Gaps = 144/621 (23%) Query: 51 PVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP- 106 + P+ K L + + H++ ++A + C LA P Sbjct: 357 ELDPEDEKSFAAWLADNECPKAMHSAK---GPVEALAGRGWEVAGLTCDTELASYLLHPD 413 Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GD 164 + K + + EG+E + + + D + E+ K D Sbjct: 414 RRSHKFDDAVRTHLNLTLGEGEE--------NSDQAMLDFGNDSSAESMERAVAVTKLAD 465 Query: 165 V-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 V E E L E + ++ G VD + L D T+ Sbjct: 466 VMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAW 525 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L+ LF + + T++ + L + F + Sbjct: 526 E-AAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLE 584 Query: 284 SRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R A+ ++ L++ + DGR+ T Sbjct: 585 HRDAIKLRQTVDGLLKEIRDDGRVHTT-------------------------------YM 613 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394 Q I + DP+ I +R + EG + L+ AD + IE R++A ++G Sbjct: 614 QTIAATGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSG 673 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q + AF +G+D + T + F VAP V+ QR+ K M L Y A Sbjct: 674 DQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKV 733 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + K+ Sbjct: 734 S-----------------------------------------------VGEAKELMAGYF 746 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 SR ++ L + +Q G RR LP Sbjct: 747 SRFGKVHEYLEEVVDQARRQGYTETLLGRRRY---------------LPDL--------- 782 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTV 628 T+T + R+ L I Q + D++ M+ + ++L V Sbjct: 783 -------TSTNRQRRDMAERAALNAPI-QGSAADLIKLAMVATDQKLAEAGLTSRVLLQV 834 Query: 629 HDEIVCETPDTDEFNASMLYH 649 HDE++ E +E + Sbjct: 835 HDELILEVTKDEEEKVRQIVT 855 >gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN] gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923] gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae] gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae] gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923] Length = 911 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 95/633 (15%), Positives = 185/633 (29%), Gaps = 152/633 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118 L + D H + + + LA P + +L+ Sbjct: 390 LADPDNPKALHEAKL---AMHDLAGRGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRY 446 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-------TVTREI 171 +++ E + N + V ++ Sbjct: 447 LRRELRAET--------PEQEQFSLLDNVDEVDKQAIQTLILRARAVVDLAAALDAELDL 498 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L E + + + G D+ L L + + ++ G Sbjct: 499 IDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGDQIRDAAEAAYAVI-GKQI 557 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV--- 288 + ++L+ LF E G+ T+T + + L + F + R Sbjct: 558 NLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKTEHPFLQHLLTHRDVTRLK 617 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + ++ L+ A+ +DGR+ T +Q I Sbjct: 618 VTVDGLLNAVAADGRIHTT-------------------------------FNQTIATTGR 646 Query: 349 SITSDPDPLQII-----SDCVRSCVIAS----EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I +R + +L+ AD + IE R++A ++ ++ + Sbjct: 647 LSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLI 706 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF TGEDL+ +R+F + +T + R K M L Y A +A+ ++ Sbjct: 707 EAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAY---GLATQLKIST 763 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 K Q +R Sbjct: 764 EEA--------------------------------------------KLQMEQYFARFGG 779 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + L EQ ++G RR LP Sbjct: 780 VRDYLMDVVEQARKDGYTSTVLGRRRY---------------LPE--------------- 809 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 L+++ RQ+ RE L I Q + DI+ M+ K+ ++L VHDE++ Sbjct: 810 LDSSNRQI-REAAERAALNAPI-QGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELL 867 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 E + + M S ++ +PL+ Sbjct: 868 FEVAIGEREQIEAMVREQMGS--AYPLDVPLEV 898 >gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] Length = 875 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 105/669 (15%), Positives = 207/669 (30%), Gaps = 161/669 (24%) Query: 21 ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68 + Y E ++LF+ + V D +V KE E ++ Sbjct: 326 LYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFEGKEIKK 385 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + +++ RT+L+ L I + + LA P + E L+S+ + + Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 F K + + +++ E +++ + L + EQ L Sbjct: 441 REDEFLKIKEVNIM--------PNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ VD + L + E E+ S++ + ++L LF + Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + P ++ R + + L A++ DG++ Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 +Q +T +++P+ I Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631 Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT R+ K + + Y G + + + + E + + Sbjct: 692 PIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + EN E A + + + TI N Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVSTILN----- 767 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 +RR + V R +N+ Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794 Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 +Q + DI+ M+N K I+L VHDE++ + E +++ M Sbjct: 795 --IQGSAADIIKLAMVNVHKKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEME 852 Query: 653 SNPSWAKGL 661 GL Sbjct: 853 QVLELKVGL 861 >gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] Length = 873 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 93/621 (14%), Positives = 178/621 (28%), Gaps = 134/621 (21%) Query: 31 ILFAFGF-DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ F ++ D + Q + + + + ++ + A + Sbjct: 332 LIVGFAIYNNSEAYYIDIENAIKC-QNFQNFINDESIEKYGYDIK---KCINAAKWHGLE 387 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 I ++ L LA PS + + E + + KG + + Sbjct: 388 IKNYVFDLQLASYILNPSLKDEIRSVCEYYDYYDVLYDEEV--YGKGAKKKIPETTAIAD 445 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 H K + + + E + + ++ +G +D + L Sbjct: 446 HLIKQAKAIYVLKDKAIEKLKQENQFDLYKDVEMPVAKILASMEYQGAKIDKDVLKDLEN 505 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSN 266 E L++E+ L + ++L LF + GL T+T +L+ Sbjct: 506 QFGKEIEVLEKEIHQLA-NKNFNIASPKQLGEVLFEDLGLPNGKKTKTGYSTSVDILNKL 564 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 K + P +V Q+ S+ Sbjct: 565 KDVHPIINKVL-------------------------------QYRTLSKLYSTYIIGLQE 593 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADL 381 Q + H +Q +T ++DP+ I +R I LV D Sbjct: 594 QIF-VDGKIHTIYNQALTQTGRLSSTDPNLQNIPVKTAEGKLIRKAFIPEYDY-LVSFDY 651 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA +A + +KAF +D++ T + F V +V R K + + Y Sbjct: 652 SQIELRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNFGIIY 711 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 +A G+ +N A NF + EN+PE Sbjct: 712 GMSDF---GLAEQVGVPVNE----------------ARNFIKRYFENYPE---------- 742 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 +K + K + M Sbjct: 743 ----IKTYMDN-----------------------------------NIEFCKKNGYVTTM 763 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618 L R + N ++Y+ + R +Q + DI+ M+ Sbjct: 764 LNRKR---FIREINEKNYMRQELGK--RLAMNSP------IQGSAADIIKVAMIKVDELF 812 Query: 619 ---KAGYDIVLTVHDEIVCET 636 ++L VHDE++ + Sbjct: 813 KKHNLKSKMILQVHDELIFDV 833 >gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008] gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008] Length = 873 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 83/535 (15%), Positives = 154/535 (28%), Gaps = 132/535 (24%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 L RF D + +A E + + E L + Sbjct: 426 LTERFSVPSIASGSVDVECVSMVKALLAMNEAACESARRE----ELWSLYETIELPLIHT 481 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G +D E ++ QE+ L G + ++L LF + Sbjct: 482 LVVMEKNGIYIDTEKLAETTTRFKEELAQVQQEIYELA-GENFNINSPKQLGVILFEKMN 540 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + +P ++ Sbjct: 541 LPIIKKTKTGYSTDAEVLDMLRHESPIVEKILA--------------------------- 573 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 + ++ + R H +Q++T +SDP+ I Sbjct: 574 ----YRSVAKLVSTYCEGLAVLINDKTRRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 629 Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R+ G LV AD + IE R+LA ++G++ +KAF G+D++ T A Sbjct: 630 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGK 689 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 A VT ++R+ K + + Y ++ G+ + + Sbjct: 690 AQDDVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 737 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 SR ++ + + ++ E GK Sbjct: 738 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 762 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+ LP S + R R+ +NT Sbjct: 763 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 792 Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M + ++L VHDE+V E +++ L Sbjct: 793 ---IQGTAADIIKLAMNQMEQKLEEQNFKSRLLLQVHDELVLEVVNSELEAIEEL 844 >gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] Length = 875 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 106/669 (15%), Positives = 205/669 (30%), Gaps = 161/669 (24%) Query: 21 ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68 + Y E ++LF+ + V D +V KE E+ ++ Sbjct: 326 LYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEIFESKEIKK 385 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + +++ RT+L+ L I + + LA P + E L+S+ + + Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 F K + + + E D + ++K EQ L Sbjct: 441 REDEFLKIKEVNIMPN---------LYKVLEEKIKDQDMEELLYK-------VEQPLTET 484 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ VD + L + E E+ S++ + ++L LF + Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + P ++ R + + L A++ DG++ Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 +Q +T +++P+ I Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631 Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT R+ K + + Y G + + + + E + + Sbjct: 692 PIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + EN E A + + + TI N Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVSTILN----- 767 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 +RR + V R +N+ Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794 Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 +Q + DI+ M+N + I+L VHDE++ D E +++ M Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVEKEME 852 Query: 653 SNPSWAKGL 661 GL Sbjct: 853 QVLELKVGL 861 >gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] Length = 888 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 93/502 (18%), Positives = 165/502 (32%), Gaps = 129/502 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS-SSRCLEKLK 240 E +L Y+ + G+ VD+ L D L + + + ++L Sbjct: 488 EHKLMYVLGDMELEGFKVDLNTLEELGVDFDKRVEDLTRNIREAAGEDEDFNVNSTKQLG 547 Query: 241 TWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 LF + GL T+T VL + P + + R S+ + LV Sbjct: 548 HVLFDKMGLPALKKTKTGYSTNIEVLEKLRDHHPIIPMIIDLRQ-ISKLNSTYVKGLVSL 606 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++ D ++ H +Q IT +S+P+ Sbjct: 607 IDKD------------------------------TNKIHSTFNQTITTTGRISSSNPNLQ 636 Query: 358 QII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R I+S E LV AD + IE RVLA ++ ++ + +F+ ED++ Sbjct: 637 NIPVRTEEGRIIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKNNEDIHTR 696 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + FNV +VT + R+ K + + Y +A + + T Sbjct: 697 TASEVFNVPIDEVTSEMRSSAKAVNFGIVYGISDF---GLAKGLSIARKDAKEYIDT--- 750 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 C++M++ A E ++ T Sbjct: 751 --YLSKYPGVCKYMEDIVVT-AKEQGYVTTMFN--------------------------- 780 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +RR + +Y ++ R G R+ LNT Sbjct: 781 ----------RRRYINEIYS--------------KNFNVRSFGE-RTALNTP-------- 807 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNA 644 +Q + DI+ M+N K ++L VHDE++ +TP + E Sbjct: 808 ----------IQGSAADIIKLAMVNVQNELNKRKLKAKLILQVHDELIIDTPMEEVEEVK 857 Query: 645 SMLYHLMTSNPSWAKGLPLKAE 666 ++L M + PLKA+ Sbjct: 858 ALLKDKMENVVD--MSCPLKAD 877 >gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702] Length = 901 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 99/634 (15%), Positives = 159/634 (25%), Gaps = 170/634 (26%) Query: 45 WDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 D + A L + H++ E L + + LA Sbjct: 386 IDLTDQDPADEATLRAWLADRGAPKWVHDAKAEWHKLN---GSGLVLAGVEQDTALAAYL 442 Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 P L+ A + H G C Sbjct: 443 LRPD-LRTGDLADVVQRHV--------------------------GHEITADAPGAVCAQ 475 Query: 164 DVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 T E+ L P E L + + G VD A L+ V Sbjct: 476 ---ATAELVAALTPELAEIGAMELYLDLEVPLATVLAKMEATGISVDAASLRDLSDEYGV 532 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 + E ++ + ++L+ LF L T+T +KL Sbjct: 533 QIEAEIAEARTIAGDDTLNLSSPKQLQKVLFETLELPKTKKTKTGYSTAAGELEKLAASH 592 Query: 274 IQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 F + A R ++ L+EA+ DGR+ T Sbjct: 593 PHPFLGHLMAHREYQKMKSTIDGLIEAVADDGRIHTT----------------------- 629 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384 +Q +SDP+ I +R G L+ AD + I Sbjct: 630 --------FNQRGAATGRLSSSDPNLQNIPVRTEAGRRIRGAFRVGTGYATLITADYSQI 681 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RV+A ++ + ++A+ GEDL+ ++ F+V VT + R K M L Y Sbjct: 682 EMRVMAHLSQDPGLIEAYRAGEDLHNYVGSKVFDVPVEHVTPELRRRVKAMSYGLVYGLS 741 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A + + Sbjct: 742 AFGLSQQLRIS-----------------------------------------------AG 754 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 K+ R + L + E G RR LP Sbjct: 755 EAKQIMDNYFERFGGVKRYLDEVVAHAKETGYTETLYGRRRY---------------LPE 799 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619 S +Q + DI+ M+ Sbjct: 800 LNSSNRVAAEAAGRAA-----------------LNAPIQGTAADIIKRAMLRVDAEFTRR 842 Query: 620 -AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651 ++L VHDE+V E D + + +L M Sbjct: 843 DLASRVLLQVHDELVVEVVDGEQDVVTEILREQM 876 >gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47] Length = 975 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 100/621 (16%), Positives = 180/621 (28%), Gaps = 91/621 (14%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------Q 55 L ID ET S +A ++ + + P + Sbjct: 397 LAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVIE 446 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113 L++ LE++ + V HN F+ VL+ + + + ++A Sbjct: 447 TLRDVLESSAIEKVGHNLKFDVIVLR---SAGVQLGGITMDTMVADYLLNSGGRNHGLDD 503 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A + K+LI K T + + Y DV V + Sbjct: 504 LAQRRLDHTNLSIKDLIGTGKKQITMDQVPV----------DDVSPYACEDVDVPIRLAP 553 Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L E L + + G V+ +++ D + L + Sbjct: 554 TLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALVF 613 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 S G + ++L LF E GL + T+T VLS A V Sbjct: 614 S-AAGHEFNLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVL--- 669 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 Q+ A++ P + R H Sbjct: 670 ----------------------------QYRQATKLKNTYIDALPQLICDKTGRVHTSFR 701 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394 Q + +S+P+ I +R+ A EG L+ AD + IE RVLA +G Sbjct: 702 QDVAATGRLSSSEPNLQNIPIRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSG 761 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + A+ D++ A + ++VT D R I K + + Y +A T Sbjct: 762 DEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPF---GLAKT 818 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQK 513 G++ + ++ + + E F +G E + + + Sbjct: 819 LGISNDEARDYIE--LYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKL 876 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRD 572 E + G A K + + K + L+L L+ Sbjct: 877 PESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLES 936 Query: 573 VGNNRSYLNTTTRQLTREYTY 593 L+ R+ Sbjct: 937 PDEELDALSDMIREAMTSVME 957 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 96/276 (34%), Gaps = 34/276 (12%) Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG-LNLNTFAHLVKT 468 T S + Q + GK + A + G + + + + + L AH Sbjct: 705 AATGRLSSSEPNLQNIPIRTEQGKAIRAA--FTAGREGWSLLGADYSQIELRVLAHYSGD 762 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + D + + + IE+ + + R+ K ++ + Sbjct: 763 EALIGAYHDDADIHTRVAAEV--NGIEESEVTSDLRRIAKTI-----NFGIVYGQSPFGL 815 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKN---NLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 +T+ I + RD +Y ++ ++ L R+ Y R R Sbjct: 816 AKTLG----ISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVR 871 Query: 586 QL-------TREYTYGGKLTENI-VQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631 L R T ++ N+ +Q + D++ M+ ++L +HDE Sbjct: 872 DLAKLPESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDE 931 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++ E+PD + + + M+ MTS +PLK + Sbjct: 932 LLLESPDEELDALSDMIREAMTSVME--LDVPLKVD 965 >gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S] gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S] Length = 928 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 103/631 (16%), Positives = 199/631 (31%), Gaps = 137/631 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V + N ++ TVL+ ++I + T+V++ +L Sbjct: 403 LKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYD--DTIVMSFDLDAGQSLAG----- 454 Query: 117 KLSSQKMEEGKEL-IARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKR 174 M+E + + C C R++ + E EY D VT +++ Sbjct: 455 ----HGMDEAARVHLNHVCISFKDVCGTGRSQISFAEVPLDKATEYAAEDADVTLRLWRL 510 Query: 175 LEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + E + L + + G VD L+ L+ E+ + Sbjct: 511 FKSRIANEGATRVYELVDRPLVGVIAKMEHEGIKVDREALSRLSAEFTAGIAALEGEIHA 570 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRA 283 L G + ++L LF + G ++ ++ ++L Q ++ Sbjct: 571 LA-GQPFAIGSTQQLGAILFDKMGYKGGRKGKSGAYSTDVTILEQLKAQGAEIA------ 623 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 G++ L + S+ Q R H Sbjct: 624 ------------------GKV---LDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLSG 662 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I +R +A G ++ AD + IE R+ A MA Sbjct: 663 AQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPAL 722 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF GED++ T + F +V +D R K + A+ Y G + +A ++ Sbjct: 723 KEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILY--GISRW-GLAGRLEIS 775 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + +A++ E P ++ Sbjct: 776 AD----------------EAQDMISRYYERFPGISL------------------------ 795 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + E+ + R + + P + G R+ Sbjct: 796 ----YITDTIEKA----------RSRGYTETLFGRKTWFPRIKAPV----QHERQGAERA 837 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638 +N + G + I +A++R A + ++L VHDE+V E P+ Sbjct: 838 AINAPIQ---------GTSADIIKRAMARMGPALAAEGLHRV--KMLLQVHDELVFELPE 886 Query: 639 TD-EFNASMLYHLMTSNPSWA--KGLPLKAE 666 D E +++ +M +PL E Sbjct: 887 GDVEHAGAVIRRVMEGAAEPIVKLSVPLGVE 917 >gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] Length = 915 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D V H++ + Sbjct: 362 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 418 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 419 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 470 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 471 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 530 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 531 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 589 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 590 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 643 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 644 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 678 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 679 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 738 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 739 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 766 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 767 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 810 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 811 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 839 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 840 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 887 >gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] Length = 910 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D V H++ + Sbjct: 357 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 413 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 414 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 465 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 466 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 525 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 526 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 584 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 585 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 638 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 639 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 673 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 674 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 733 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 734 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 761 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 762 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 805 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 806 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 834 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 835 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 882 >gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL] gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL] Length = 850 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 88/527 (16%), Positives = 163/527 (30%), Gaps = 138/527 (26%) Query: 165 VTVTREIFKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 V + ++ L L ++ E+ L + + G+ VD + ++ + Sbjct: 426 VILLERLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESK 485 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTP 271 L++++ + G + ++L LF + L + T+T VL Sbjct: 486 ILNLEKQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 + + RM +G LQ P Sbjct: 545 IVPLILDYRMYTKILTTY--------------CQGLLQA-----------------INPS 573 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q T +SDP+ I +R I EG L+ AD + IE Sbjct: 574 SGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIEL 633 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA ++ ++ + AF+ D++ T A F V VT + R+ K + + Y Sbjct: 634 RILAHISEDERLINAFKNNVDIHSQTAAEIFGVDIDDVTPEMRSQAKAVNFGIVYGISDY 693 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +A ++ A + E +P+ + + + Sbjct: 694 ---GLARDIKISRKEAAEFIN----------------RYFERYPK-------VKEYLDNI 727 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K R+ + V L+N ++R + + Sbjct: 728 VKFARE-NGYVLTLFN-------------------RKRYIKDINSTNR------------ 755 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----- 621 N RSY R +Q + DI+ M+ + Sbjct: 756 --------NTRSY-------AERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNL 794 Query: 622 -YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 I+L VHDE++ E P + + ++ M + A +PL E Sbjct: 795 KAKIILQVHDELLIEAPYEEKDIVKRIVKTEMENAV--ALKVPLVVE 839 >gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] Length = 905 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 94/507 (18%), Positives = 158/507 (31%), Gaps = 128/507 (25%) Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 +E ++ E + + T+ G VD+ H L D + Q+ G + Sbjct: 498 IELMAELELPIVEVLATMEQAGIAVDLDALHELEADYDAQVVAAQQDAWDAIGGEQVNLG 557 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KL 291 ++L+ LF GL T+T + L+ +A F + + R A + Sbjct: 558 SPKQLQVVLFETLGLPKTKKTKTGYTTDAEAIADLSEKAPHPFLDALLRHRDASKLRSTV 617 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++++ DGR+ T Q I + Sbjct: 618 QGLIKSIGDDGRIHTT-------------------------------YQQTIAATGRLSS 646 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +DP+ I +R + EG L+ AD + IE RV+A ++G++ ++AF G Sbjct: 647 TDPNLQNIPIRTESGRRIRRVFVVGEGYDCLMSADYSQIEMRVMAHLSGDEGLIQAFNDG 706 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ +R F V P++VT + RA K M L Y A K + Sbjct: 707 EDLHRFVGSRVFGVEPSEVTSEMRAKVKAMSYGLAYGLSAFGLSKQLRISTAEAQ----- 761 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + R + + L Sbjct: 762 ------------------------------------------RLMDGYFERFGGVRDYLR 779 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 Q + G RR LP L + R Sbjct: 780 QIVDDARATGYTETMMGRRRY---------------LP---------------DLTSDNR 809 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT 639 Q R+ L I Q + DI+ + M+ +A ++L VHDE++ E Sbjct: 810 Q-RRDMAERMALNAPI-QGSAADIMKKAMLGVDEALRAANLRSRVLLQVHDELIVEVGAG 867 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKA 665 + + M + A +PL Sbjct: 868 ERDEVERIVREQMGAAADLA--VPLDV 892 >gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266] Length = 931 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D V H++ + Sbjct: 378 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 434 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 435 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 486 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 487 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 546 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 547 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 605 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 606 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 659 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 660 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 694 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 695 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 754 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 755 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 782 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 783 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 826 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 827 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 855 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 856 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 903 >gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] Length = 879 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 103/663 (15%), Positives = 214/663 (32%), Gaps = 162/663 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60 +D E+ D G+ A++ ++ F+F +++ H + L+ A Sbjct: 313 LDKESIIAFDTETTGLD--AKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQI--SLQSA 368 Query: 61 LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + ++ + HN ++ +++ FNL +P + T++LA + AL Sbjct: 369 KKAIELIFNHFVIGHNLKYDFKIIQNNFNLTLPQE-YADTMILAWLKNPSLRVNMDDLAL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ KGE + +Y D +T + Sbjct: 428 RLFNYETLHFESLVK---KGENFTSV----------ELEKACKYAAEDAYITLRFYLYFL 474 Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LE PL E + + I + G +D L + + E L +E+ L Sbjct: 475 KNLETPLLELAKTCEFDFIKIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEIYILCE 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL++ P ++ + R + Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYR-ELA 592 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D + SR + Q T Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC +A EG + D + IE R+LA + ++ L Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKNYKSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++V T F + + R++ K + L Y G ++ ++ + Sbjct: 684 NAFANDEDIHVRTAMMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + + Sbjct: 737 SLA--------------------------------------------KSYIEKYFENFTS 752 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + +NG + SGR + Y Sbjct: 753 IKKYFEKIKNEAKQNG-----------------------FITTLSGR----------KRY 779 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636 + + + Y + +I+Q + D++ M+ K + ++L +HDE++ E Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839 Query: 637 PDT 639 D Sbjct: 840 KDK 842 >gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] Length = 867 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 96/547 (17%), Positives = 157/547 (28%), Gaps = 141/547 (25%) Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRG 196 R+ GE VT ++ RL + E + + G Sbjct: 421 LEEDRDLLTDVGEQLGHRAWVTVALYPRLRQDLERNHLQDVLDGIEIPTQEILARMEIAG 480 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 +D ++ + L + + E + + G + ++L+T LF E + T+ Sbjct: 481 IAIDQSVLNELITEFEAAAQQSASEAYA-SIGHEVNLNSPKQLQTVLFDELNMPKTKRTK 539 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV---EAMNSDGRLRGTLQFLGA 313 T S L + F + A R T+V + + DGR+ T Sbjct: 540 TGYTTDADSLADLLVKTQHPFLEHLLAHRDRTKLKQTVVGLQKVVADDGRIHTT------ 593 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +RS Sbjct: 594 -------------------------YLQTVAATGRLSSKDPNLQNIPVRTDAGRRIRSVF 628 Query: 369 IA---SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 A + L+ D + IE R++A ++G++ ++AF+ GEDL+ + F V VT Sbjct: 629 QAAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIEDVT 688 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 QR+ K M L Y A ++ G+ + L Sbjct: 689 DQQRSKVKAMSYGLVYGLSAY---GLSRQLGIPTGEASAL-------------------- 725 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 +R + L Q E+ G RR Sbjct: 726 ------------------------MDDYFARFGAVKEYLDQVVEEARGRGYTETMYGRRR 761 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 LP RS R+ RE L I Q Sbjct: 762 Y---------------LPQLRS----------------DRRQLREMAERAALNAPI-QGS 789 Query: 606 SRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658 + DI+ M A ++L VHDEI+ E + L M+ Sbjct: 790 AADIMKIAMKRVDDALREAELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQAAD-- 847 Query: 659 KGLPLKA 665 +PL Sbjct: 848 LSVPLDV 854 >gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985] gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985] Length = 903 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 193/621 (31%), Gaps = 155/621 (24%) Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + L A + A + G ++ V + L++ G+ F Sbjct: 378 DTAALGAWLADPAAPKAFHEAKWAAHALRGQGFSIAGVTTDIGLAAYIARPGQ---RSFQ 434 Query: 135 KGETHECLYDRNK-PNHREAWRLFGEYCKGD-----------VTVTREIFKRLEPLSSK- 181 + R P+ +L + D RE+ + L+ + +K Sbjct: 435 LPDLAVRYLRRQLGPDDSGQKQLSLLDAEQDDNAEANGAVSEAAAIRELGEALDDVLAKA 494 Query: 182 ---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E L ++ + + G VD L+ + + ++ G + Sbjct: 495 GSADLLHTMELPLTFVLGAMEEAGIAVDQDALAGLHADFSARVQQAAESAYAVI-GKEIN 553 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---L 289 ++L+ LF E G+ T+T + + L + F + + R A Sbjct: 554 LGSPKQLQVVLFDELGMPKTKKTKTGHTTDADALQWLFERTEHPFLSHLLEHRDATRLMT 613 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L++A+ DGR+ T Q + Sbjct: 614 TAQGLIKAVGPDGRIHTT-------------------------------FRQDVAATGRL 642 Query: 350 ITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++DP+ I + +R + EG + L+ AD + IE R++A ++G++ ++AF Sbjct: 643 SSTDPNLQNIPVRTEEARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDEGLIEAFR 702 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 TGEDL+ +R+F V QV + R K M L Y A + +G Sbjct: 703 TGEDLHNFVASRAFGVPIDQVGAELRRRVKAMSYGLAYGLSAFGLAQQLGVSG------- 755 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 E K +R + + Sbjct: 756 ----------------------------------------EEAKAQMEAYFARFGGVRDY 775 Query: 524 LHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 L + E+ G + +RR +P + T Sbjct: 776 LREVVEEARRKGYTETLFGRRRYLPDL--------------------------------T 803 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET 636 + Q R L I Q + DI+ M++ +A ++L VHDE+V E Sbjct: 804 SDNQQQRAVAERAALNAPI-QGSAADIIKVAMIHVAEALAARNMRSRMLLQVHDELVLEV 862 Query: 637 PDTDEFN-ASMLYHLMTSNPS 656 + ++ A+++ M S Sbjct: 863 AEGEQDELAALVAEQMGSAIE 883 >gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] Length = 952 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 75/342 (21%), Positives = 122/342 (35%), Gaps = 51/342 (14%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 K L E+ L + + G VD +L ++ + VE +L +E + G + Sbjct: 546 KLLRVYEDIERPLVGVLARMESAGITVDASLLAQESKELGVEVEQLVEEAHA-AAGHPFN 604 Query: 233 SRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 ++L LF E GL + T +T + VLS P + +R Sbjct: 605 LSSPKQLAQILFAEQGLPVVKKTASGTPSTDEEVLSELALNYPLPKIILEHRRL------ 658 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 ++ P + R R H Q + Sbjct: 659 -------------------------TKLKSTYLDKLPTL-IDRDGRIHTTFGQAVAVTGR 692 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R+ A G ++ AD + +E R++A ++ + L AF Sbjct: 693 LSSMDPNLQNIPTRTPEGRRIRTAFTARRGWSVIDADYSQVELRIMAHLSQDAGLLSAFS 752 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ +T A F+ QVT DQR + KV+ L Y A +A GL+ A Sbjct: 753 RGEDIHRSTAAEVFHTPLDQVTPDQRRMAKVINFGLIYGMSAF---GLAQQMGLDRQVAA 809 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 V E+ + E A ED ++ TA R Sbjct: 810 AYVD------EYFHKFPGVKRYMEKTRAQAAEDGYVETAFGR 845 >gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4] gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4] Length = 884 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 84/545 (15%), Positives = 181/545 (33%), Gaps = 72/545 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112 + K+ L + ++ ++ R ++ + I I L++A P+ Sbjct: 363 EAFKKWLADDEMRKYTFDAK--RAIVALKW-KGIEIQGIYFDLLIAAYLLDPADTDKDFR 419 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTV--- 167 A + ++ +E+ + K R P + DV Sbjct: 420 AVAKMKETHAVKSDEEVYGKGAK---------RAVPAQDIVAEHVARKVHVLYDVQKTFV 470 Query: 168 -TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + ++ E + E L + + +G VD ++ + +++QE+ L Sbjct: 471 EELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELA 530 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF L + T+T VL + ++ + R Sbjct: 531 -GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMEHHEIIPKILHYRQL- 588 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ ++ D S+ H +Q++ Sbjct: 589 GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQVL 618 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 T ++DP+ I +R I S EG + AD + IE RVLA +A ++ Sbjct: 619 TQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKG 678 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF+ D++ T F V +VT + R K + + Y + G+ Sbjct: 679 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGI 735 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + E++ + + + + A + ++ T R ++ + SR Sbjct: 736 TRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR-RRYIPEITSRN 788 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 L + + T G A K+ + + +++ L+L L++ Sbjct: 789 FNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEE 848 Query: 577 RSYLN 581 L Sbjct: 849 VEKLE 853 >gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] Length = 896 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 103/640 (16%), Positives = 204/640 (31%), Gaps = 161/640 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 L++ LE+ + + L LDI ++LA ++ Sbjct: 377 LRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYLVNNENNSNDLGEV 433 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A ++ E+ + K E F + + Sbjct: 434 AHLYDDYSVKTDLEVYGKGKKQAV------------PEDDEFFEHLAAKVAVIEKLKQPL 481 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 LE L EQ+ Y + + G V+ ++ + L V+ +L+ ++ Sbjct: 482 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 541 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282 G + ++L LF + L T+T + ++L +P ++ + R Sbjct: 542 A-GEEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 600 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L+E + D R+ H Q Sbjct: 601 A-KIQNTYVKGLLECIQPDSRI-------------------------------HTRYLQT 628 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395 +T + DP+ I +R + S +G D + +E RVLA ++G+ Sbjct: 629 LTATGRLSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 687 Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF++G D++ T + F++ P +VT R K + + Y ++ Sbjct: 688 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 744 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + E +P Sbjct: 745 LGISRKQAKTFIDN----------------YFEQYP------------------------ 764 Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ + + +A ++ ENG A I +RR +P ++ K + RS Sbjct: 765 ----QIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 807 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 R+ +N+ +Q + DI+ M+N K +VL Sbjct: 808 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 847 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 VHDE++ + P + + +M S +PL A+ Sbjct: 848 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 885 >gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] Length = 881 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 96/652 (14%), Positives = 196/652 (30%), Gaps = 159/652 (24%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK--------ACFNLDIPIHRWICTLVL 99 + L +V +S + TV L +P ++L Sbjct: 345 TKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNIVAAHRLGLHLP--DIAFDVLL 402 Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 A P + A + +++ + K R P + + F Sbjct: 403 ASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAK---------RQVPEDKLLFEQF 453 Query: 158 GE-----YCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + D+T ++ + + E L + + +G ++ + Sbjct: 454 ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKNMGTEF 513 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKK 268 L++++ G+ + ++L LF + L + T+T VL+ K Sbjct: 514 SQSIKVLEEKIYGEA-GVKFNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKS 572 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 +P + + G ++ Sbjct: 573 ASPIVQDIL-------------------------------DYRGWAKLNSTYVVGLLKAQ 601 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD----CVRSCVIAS-EGKKLVVADLAG 383 +P + H Q +T + DP+ I + +R + S ++ +D + Sbjct: 602 MP-DHKIHTRYLQTLTQTGRLSSVDPNMQNIPARDEGKIIRKAFVPSHPDWQIFSSDYSQ 660 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442 IE RVL+ ++G++ +AF+ G D++ T + F + P +VT D R K + Y Sbjct: 661 IELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG 720 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 +A G++ + Sbjct: 721 ISDY---GLAQNIGISRKKAKAFIDGYF-------------------------------- 745 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILM 561 + + + H + + ++ E+G + +RR +P ++ Sbjct: 746 -----EQYPKVH-------DYMENMVKKAREDGYVETLFHRRRYLPQIHS---------- 783 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621 R+ R R+ +NT +Q + DI+ M+ KA Sbjct: 784 ----RNFNLRKF-AERTAMNTP------------------IQGSAADIIKVAMIRMQKAL 820 Query: 622 ------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + L +M S S +PLK E Sbjct: 821 DEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLV--VPLKVE 870 >gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 921 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 96/625 (15%), Positives = 192/625 (30%), Gaps = 149/625 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113 + LK LE+ + + N ++ VL I + + T++L+ Sbjct: 396 KKLKPVLEDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRHGHGMDE 452 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 +L + K + T + P Y D +T ++ Sbjct: 453 LSLLYFDHQPISFKSVCGTGKSAITFN-----HVPIPA-----ATRYAAEDADITFRLWA 502 Query: 174 RLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 L+P ++ L + + G VD H L+ + ++L++E+ Sbjct: 503 LLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIY 562 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMR 282 L G ++L LF GL +++ ++ ++L + + + Sbjct: 563 VLA-GCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGEVIASK--- 618 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 L++ S+ + P R H + Sbjct: 619 ------------------------ILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLV 654 Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 ++DP+ I I +R+ IA +G L+ AD + IE R+ A +A E+ Sbjct: 655 GAQTGRLSSTDPNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKA 714 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L+AF+ ED++ T + F V ++ RA K + A G+ Sbjct: 715 LLQAFQEKEDIHALTAKQLFG----HVDRESRARAKTIN--------------FAILYGI 756 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A ++ + A+ E P Sbjct: 757 SAWGLAARLEIDR-----FSAQEMIDRYFERFP--------------------------- 784 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + + + + +G + P GR + Sbjct: 785 -AIRHYIDRTLDFVRLHG-----------------------YVETPFGRKTHLPAIK--- 817 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHD 630 +R++T + +Q +S DI+ M+ A ++L VHD Sbjct: 818 ------SRKVTERQAAERQAINAPIQGMSADIIKRAMVRMEPALAKAGLSSVKMLLQVHD 871 Query: 631 EIVCETPDTDEFNAS-MLYHLMTSN 654 E++ E P+ D A ++ +M Sbjct: 872 ELIFEVPEEDIEKAKPVIRQVMMEA 896 >gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B] gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B] Length = 878 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 102/491 (20%), Positives = 164/491 (33%), Gaps = 130/491 (26%) Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G +D A V E +L+ + L G + R +L L+ GL Sbjct: 491 MERIGIGIDTAALAAFGAEVATELARLEGAIRELA-GEGFNPRSSRQLGEVLYGRMGLKP 549 Query: 252 EDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307 T +T Q L P ++ R + + L+ L ++ GR+ Sbjct: 550 RGKTPGGAASTSQEALERLAGENPLVDRILEFR-KLEKLRSTYLDPLPRLADAAGRI--- 605 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISD 362 H + + T +S+P+ I + Sbjct: 606 ----------------------------HTTFNNLATATGRLSSSNPNLQNIPIRGTLGR 637 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R C +A+ GKKLV AD + IE RVLA ++GE L AFE G D++ T A F+ A A Sbjct: 638 RMRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEA 697 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 + D+R K + L Y G QK++ G+ L+ Sbjct: 698 DIRPDERRQAKTINFGLLYGMGP---QKLSRDLGIKLDAAKA------------------ 736 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 FI ER+ S +S + + + + +A + Sbjct: 737 ---------------FIEKYFERL--------SGLSTFYQGIVDTAKA--QGFVTTLAGR 771 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P ++ Q R+ +V Sbjct: 772 RRLLPEIHSANS---------------------------QLASQARRQ------AINTVV 798 Query: 603 QAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655 Q + DI+ M+ A G +VL VHDE++ ETP+ A L LM Sbjct: 799 QGGAADIIKMAMLAAHNDPELAGLGAAMVLQVHDELLLETPEAAAQAAGERLSALMCGVV 858 Query: 656 SWAKGLPLKAE 666 + A +PL + Sbjct: 859 ALA--VPLAVD 867 >gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22] gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22] Length = 886 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 103/640 (16%), Positives = 204/640 (31%), Gaps = 161/640 (25%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 L++ LE+ + + L LDI ++LA ++ Sbjct: 367 LRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYLVNNENNSNDLGEV 423 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A ++ E+ + K E F + + Sbjct: 424 AHLYDDYSVKTDLEVYGKGKKQAV------------PEDDEFFEHLAAKVAVIEKLKQPL 471 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 LE L EQ+ Y + + G V+ ++ + L V+ +L+ ++ Sbjct: 472 LEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQ 531 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMR 282 G + ++L LF + L T+T + ++L +P ++ + R Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQI 590 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L+E + D R+ H Q Sbjct: 591 A-KIQNTYVKGLLECIQPDSRI-------------------------------HTRYLQT 618 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395 +T + DP+ I +R + S +G D + +E RVLA ++G+ Sbjct: 619 LTATGRLSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGD 677 Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF++G D++ T + F++ P +VT R K + + Y ++ Sbjct: 678 EHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKN 734 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + E +P Sbjct: 735 LGISRKQAKTFIDN----------------YFEQYP------------------------ 754 Query: 515 SRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 ++ + + +A ++ ENG A I +RR +P ++ K + RS Sbjct: 755 ----QIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNF---------NVRSFA---- 797 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 R+ +N+ +Q + DI+ M+N K +VL Sbjct: 798 --ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837 Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 VHDE++ + P + + +M S +PL A+ Sbjct: 838 VHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIAD 875 >gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 874 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 74/408 (18%), Positives = 126/408 (30%), Gaps = 53/408 (12%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + + + E L + + G CV+ A L +E+ +L Sbjct: 458 ETELAAQELMHLYRTVELPLVPVLAAMEQTGVCVNRAALEHERAAATERIDALAREIHTL 517 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNR 280 G + ++L LF + GL + +T T L + P +V R Sbjct: 518 A-GTEFNISSPKQLGEILFEQLGLGDGKVKKTKTGYSTNAETLEGLRDQHPIIDKVLTYR 576 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 M ++ P R H + Sbjct: 577 M-------------------------------WTKLRSTYLDGIGALIRPATGRVHTSFN 605 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I VR+ EG L+ AD + IE R+LA M+G Sbjct: 606 QTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSG 665 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF G+D++ T A F V VT +QR K + + Y +A Sbjct: 666 DATLIDAFRQGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDF---GLARD 722 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + + + + R + A + ++ T R ++A Sbjct: 723 LGIGRREAGGYID------RYFERYHGVRTFLDKIVADAHANGYVTTLYGR-RRALPALA 775 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 SR + + T G A K V + +L Sbjct: 776 SRNYMQRSFAERMAMNTPIQGTAADLIKIAMVRAYDALQAAGVKSRIL 823 >gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c] gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c] Length = 312 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 103/255 (40%), Positives = 138/255 (54%), Gaps = 5/255 (1%) Query: 154 WRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W F EY + DV R++ KRL + E LW+LDQTINDRG +D L V Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGAV 62 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + + L Q E+LT G V ++ + L L G+ L D+ + T R + L Sbjct: 63 ERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVDDPA-LPE 121 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 ++ + R +AS ++ K L+ + DGRLRGTLQF GASRTGRW+G +F P NLPR Sbjct: 122 TVRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPR 181 Query: 332 PSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389 P+ S E + I + D + + S +RSC+IA KKLVVADL+ IE RVL Sbjct: 182 PTLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRVL 241 Query: 390 AWMAGEQWKLKAFET 404 AW+AGE KL AF Sbjct: 242 AWLAGETPKLHAFRE 256 >gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] Length = 948 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 109/638 (17%), Positives = 186/638 (29%), Gaps = 148/638 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-- 114 LK LE+ V + N ++ VL I + T++L+ + VG Sbjct: 420 LKPLLESDAVLKIGQNIKYDLNVLARY---GIAVAPIDDTMILSFDLDAGRSEGGVGGHG 476 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +LS + + C + P EY D VT + + Sbjct: 477 MDELSERHLGHTPLSFKEVC------GTGRKQIPFGEVPLDKATEYAAEDADVTWRLHQH 530 Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 L+P + E L + + G VD A L++ E KL++ + Sbjct: 531 LKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDRARLAKLSEEFATETAKLEKTIHE 590 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKL-TPQAIQVFNN 279 L G + ++L LF + G +T Q VL A +V Sbjct: 591 LA-GKEFTVGSPKQLGEVLFDDLGHKGGKKGKSGQYSTDQSVLERLSGDGAEIADKVLEW 649 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R ++ P R H Sbjct: 650 RQL-------------------------------TKLKSTYTDALQQAINPDTGRVHTSY 678 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 + ++DP+ I I +R + G L+ AD + IE R+ A MA Sbjct: 679 SLVGAQTGRLSSTDPNLQNIPIRTPIGRQIREAFVPENGNVLLAADYSQIELRLAAHMAD 738 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +AF GED++ T + + +D RA K + A Sbjct: 739 VPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTIN--------------FAIL 780 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ A +K + ++ Sbjct: 781 YGISRWGLAGRLKIEP---------------------------------DEAQELIDTYF 807 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + + +H+ E E G + GR + +G Sbjct: 808 KRFPGIQSYIHETLETVRERGYSETLF-----------------------GRKTWFPRIG 844 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---DIVLTVHDE 631 + + + G + I +A++R M AG ++L VHDE Sbjct: 845 SKNQAERQGSERAAINAPIQGTSADIIKRAMAR-----MMPALEDAGLEHVRMLLQVHDE 899 Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAE 666 +V E P+ D E + ++ +M A +PL E Sbjct: 900 LVFELPEGDVEAASPIIERVMAEAALPAVELSVPLGIE 937 >gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 933 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 92/546 (16%), Positives = 178/546 (32%), Gaps = 56/546 (10%) Query: 36 GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95 D V+ W + + L + + H ++ VL +L++ + + Sbjct: 390 SLSDGAVQQW---KPSEVLAKVGPLLSDAKLPKYTHALKDQQVVLSRA-DLNVEVRNVVG 445 Query: 96 TLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR-NKPNH 150 +LA P L+ + + + E ++ + K + + P Sbjct: 446 DTLLASYTLDPARSDHNLEGLAKDIGGRLVGDRES--IVGKGKKRVGFDQVAVAVAGPWA 503 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 E L V + ++ + L + E L + + RG +D A N Sbjct: 504 GERAGLAATLGPHMVAAAKAAGEQTQKLYAEVELPLARVLARLERRGVLLDEAELQRQND 563 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 + + L L+ G ++L LF E GL + T+T + ++L Sbjct: 564 ELGGQIDALKSTLQEEA-GYAVDPNSPKQLGKLLFEERGLPAKKKTKTGYSTDAQTLEEL 622 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + D ++ L + ++ P Sbjct: 623 SLL----------------------------DPIVKVILDYRSLAKLKNTYLDTLPKLVN 654 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384 P R H Q + + +P+ I +R +A EG +LV D + I Sbjct: 655 PNTGRLHTHFRQAVAATGRLSSREPNLQNIPIRTEQGRRIRRGFVAPEGMQLVTLDYSQI 714 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA ++ + +KAF G D++ T A F V A+VT +QR + K + + Y Sbjct: 715 ELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAEVTSEQRRVAKAVNFGVIYGQS 774 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A +A G+ +K ++ ++ + + + + G Sbjct: 775 AF---GLARQLGIPQGRAGKYIKA--YFKKIPGVSSYMNALIDTAKDTGFAETIFGRRRR 829 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + R +R + + T G A K V + + DK ++L Sbjct: 830 IPELRRRGAVAR-----SYGERIARNTPIQGSAADILKIAMVEVERLLDDKPWARMLLTV 884 Query: 565 GRSLVY 570 L++ Sbjct: 885 HDELIF 890 Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Query: 590 EYTYGGKLTEN-IVQAVSRDILAEGMMNATKAG-----YDIVLTVHDEIVCETPDTDEFN 643 +YG ++ N +Q + DIL M+ + ++LTVHDE++ E Sbjct: 840 ARSYGERIARNTPIQGSAADILKIAMVEVERLLDDKPWARMLLTVHDELIFECETDKVQE 899 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEG 667 L + + +PL EG Sbjct: 900 LIGLVKPAMEKSA-SLDVPLLVEG 922 >gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1] gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1] Length = 914 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 110/632 (17%), Positives = 193/632 (30%), Gaps = 145/632 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L + L + D H + + A + LA P Sbjct: 392 LGDWLADADQPKALHEAK---WAMHALRGRGWVLGGLTSDTALAAYLVRPGQ-----RTF 443 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTVTRE 170 L + + + GE L D EA + + Sbjct: 444 NLDDLSLRYLRRELRVEETGEEQLSLLDDADQVDAEAAETEILSARAVLDLAAALDTELD 503 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + LS E L + I G VD H L E + + + G Sbjct: 504 NIESTALLSEMELPLLEVLADIEASGIAVDGTHLHDLQSRFAAEVSAAAEAAYGVI-GKQ 562 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV-- 288 + ++L+ LF E + T+T + + L + F + A R A Sbjct: 563 INLGSPKQLQVVLFDELEMPKTKKTKTGYTTDAEALQNLFEKTSHPFLEHLLAHRDATRL 622 Query: 289 -LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + ++ L++ + DGR+ T +Q + Sbjct: 623 KVTVDGLLKTVAEDGRIHTT-------------------------------FNQTVAATG 651 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R + EG L+ AD + IE R++A ++G++ ++A Sbjct: 652 RLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDEGLIEA 711 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F TGEDL+ AR+F V +VT + R K M L Y A +A+ ++ Sbjct: 712 FNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAF---GLAAQLKISTEE 768 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 K +R + Sbjct: 769 A--------------------------------------------KSQMEAYFARFGGVR 784 Query: 522 NELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + LH+ EQ ++G + + +RR +P + Sbjct: 785 DYLHEVVEQARKDGYTSTLYGRRRYLPDL------------------------------- 813 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634 T+ + RE L I Q + DI+ M+N ++ ++L VHDE+V Sbjct: 814 -TSDNRQRREVAERAALNAPI-QGTAADIIKVAMINVQRSLRDAGLKSRMLLQVHDELVL 871 Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 E D++ L M+S +PL Sbjct: 872 EVVDSEREQVEQLVRDKMSSAIE--LSVPLDV 901 >gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17] gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17] Length = 877 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 84/545 (15%), Positives = 181/545 (33%), Gaps = 72/545 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112 + K+ L + ++ ++ R ++ + I I L++A P+ Sbjct: 356 EAFKKWLADDEMRKYTFDAK--RAIVALKW-KGIEIQGIYFDLLIAAYLLDPADTDKDFR 412 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTV--- 167 A + ++ +E+ + K R P + DV Sbjct: 413 AVAKMKETHAVKSDEEVYGKGAK---------RAVPAQDIVAEHVARKVHVLYDVQKTFV 463 Query: 168 -TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + ++ E + E L + + +G VD ++ + +++QE+ L Sbjct: 464 EELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELA 523 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF L + T+T VL + ++ + R Sbjct: 524 -GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMEHHEIIPKILHYRQL- 581 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ ++ D S+ H +Q++ Sbjct: 582 GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQVL 611 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 T ++DP+ I +R I S EG + AD + IE RVLA +A ++ Sbjct: 612 TQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKG 671 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF+ D++ T F V +VT + R K + + Y + G+ Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGI 728 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + E++ + + + + A + ++ T R ++ + SR Sbjct: 729 TRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR-RRYIPEITSRN 781 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 L + + T G A K+ + + +++ L+L L++ Sbjct: 782 FNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEE 841 Query: 577 RSYLN 581 L Sbjct: 842 VEKLE 846 >gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116] gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116] Length = 907 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 102/693 (14%), Positives = 208/693 (30%), Gaps = 166/693 (23%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57 + ID ET S + Y +I + F + + ++ Sbjct: 340 KYISIDTETSS--------LDTY--TAKLIGISISFKEFEGYYIPIEAKGKVYIEKHYII 389 Query: 58 KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 ++ L + I+ N F+ +LK IP + T++ A S + A Sbjct: 390 QKFNNLFKSKPKIIGQNYKFDYKILKNNGFDPIPP--YFDTMIAAYLIDTNSKVSLDFLA 447 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF--- 172 K K + +++I +N + + Y D +T +F Sbjct: 448 EKYLMHKNIKYEDVIQ-------------KNDNFAHISLEMATSYSSEDADITFRLFNVF 494 Query: 173 -KRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 ++L+ + E + + + G +D + + E ++ E+ Sbjct: 495 NEKLKEDGLDKLMYEIEMPFNRVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK- 553 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G+ + +++ LF L L D + T +VL S K + +R A Sbjct: 554 SIGIDFNLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKVLESLKGQHESIENLIKHRQIA 613 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + +R H Q Sbjct: 614 -------------------------------KLKSTYTDNLTELINYKTNRLHTNFIQTK 642 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T + +P+ I +R G + AD + IE +LA ++ ++ Sbjct: 643 TATGRITSINPNLQNIPIKEEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVL 702 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +KAFE +D++ T ++ F + ++T + R I K + + Sbjct: 703 IKAFENNKDIHAETASKLFKIEEKEITPNLRRIAKSINFGII------------------ 744 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + + A E + ++ + ++ Sbjct: 745 --------------------------YRMSDFRLAKELGITKEEAKGFINSYFDSYPKIK 778 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E T I+++RR + + + NN + + R Sbjct: 779 EFITNQINFVRNT--GYSETISKRRRYIKEI----NSNNYLERSAAERI----------- 821 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632 +I+Q + DI+ M+ K I+L VHDE+ Sbjct: 822 ------------------AINSIIQGSAADIMKIAMIKVFNEFKSKKMKSKILLQVHDEM 863 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + E+P +E + M ++ LPL+A Sbjct: 864 LIESPIEEENETKKILKNMMET-AYTLSLPLRA 895 >gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1] Length = 892 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D V H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] Length = 891 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 90/513 (17%), Positives = 152/513 (29%), Gaps = 125/513 (24%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E + L+ E L + T+ G VD TL+ QE ++ Sbjct: 477 AELEASDSMSLLADLELPLVDVLMTMESTGIAVDTDHLDTLHAEFTERMLGAAQEAYAVI 536 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G + ++L+ LF E G+ T+T + + L + F + A R Sbjct: 537 -GREVNLGSPKQLQVVLFDELGMPRTKRTKTGYTTDADALQGLFAKTQHPFLEHLLAHRD 595 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 RLR T++ P R H Q I Sbjct: 596 VT--------------RLRQTVE-------------GLQKTVAP-DGRIHTTYAQTIAAT 627 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLK 400 ++DP+ I +R G + L+ AD + IE R++A ++ + ++ Sbjct: 628 GRLSSADPNLQNIPIRTESGRRIREAFCVGPGFETLLTADYSQIEMRIMAHLSEDAGLIE 687 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF TGED + A+ F+ P + RA K M L Y + + G++ Sbjct: 688 AFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAMNYGLAYGLSSY---GLGQQLGISPG 744 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 L + Sbjct: 745 DAQVL--------------------------------------------MDDYFQTFGGV 760 Query: 521 WNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + LH ++ + G A I +RR +P + Sbjct: 761 RDYLHGVVDEARQTGFTATILGRRRYLPDL------------------------------ 790 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 + + RE L I Q + D++ M+ +A G ++L VHDE+V Sbjct: 791 --QSDNRQRREMAERMALNAPI-QGSAADLIKVAMLGVDRALADAGLGSRMLLQVHDELV 847 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 E + L M + +PL Sbjct: 848 LEVAPGERDALEALVREQMAAAAD--LSVPLDV 878 >gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] Length = 876 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 94/576 (16%), Positives = 159/576 (27%), Gaps = 135/576 (23%) Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 +G+ L + + + C G+ E D + E + Sbjct: 405 ELGDYLLHPEESRRDIERTAFALC-GDAAEAPADLSDEQRAEREAQLAARLHSPLQAALA 463 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L E L + + G V+ + L +E+ +L G+ Sbjct: 464 EAGLLPLYQDVELPLVPVLAAMEQTGIYVNRTALERERAAANARIDALAEEIHALA-GME 522 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC------QRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF L + T L + P +V RM Sbjct: 523 FNISSPKQLGEVLFERLELAAGTKIKKTKTGYSTNAETLEELRDRHPIVDKVLTYRM--- 579 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 ++ P R + +Q +T Sbjct: 580 ----------------------------WTKLRSTYLDGIGALIRPETGRVYTNFNQTVT 611 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWK 398 +SDP+ I VR+ EG L+ AD + IE R+LA M+G+ Sbjct: 612 ATGRLSSSDPNLQNIPVRTEEGRAVRALFEPGEGYDVLLSADYSQIELRILAHMSGDATL 671 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF G+D++ T A F V VT +QR K + + Y ++ + Sbjct: 672 IDAFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNFGIVYGLSDY---GLSRDLRIP 728 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A ++ + R Sbjct: 729 RKEAAGYIE--------------------------------------------RYFERYH 744 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN-NR 577 + L + NG RR L + S Y R Sbjct: 745 GVREFLDKTVADAHANGYVTTLYGRR---------------RELSAINSRNYMQRSFAER 789 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDE 631 +NT +Q + D++ M+ A A + I+L VHDE Sbjct: 790 MAMNTP------------------IQGTAADLIKIAMIRAHDALHAAGVKSRILLQVHDE 831 Query: 632 IVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 +V E + + S L M+ A +PL + Sbjct: 832 LVLEAAEAEIAQVSGLLRTAMSGAAELA--VPLAVD 865 >gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121] Length = 466 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 82/551 (14%), Positives = 163/551 (29%), Gaps = 140/551 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTV----TREIFKRLEP------LSSKEQELWYLDQT 191 +Y + K +H + ++ + E+ K+L+ L+ E L + Sbjct: 19 IYGKGKKHHVPEDEILNKHVASIIEAVSESKAEMQKQLKEYNQESLLADLELPLAEILSE 78 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + + G DV + + + + L + + G + ++L LF L + Sbjct: 79 MEEIGIFTDVKDLQQMEKEIQEKLDVLIKNIHE-AAGEEFNINSPKQLGVVLFETLELPV 137 Query: 252 EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T+T VL + P + R Sbjct: 138 IKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQL-------------------------- 171 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363 S+ + R H +Q + + DP+ I Sbjct: 172 -----SKLQSTYVEGLQK-VISDDHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRK 225 Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R S ++ AD + IE RVLA + ++ +AF G D++ T + F+V Sbjct: 226 IRKAFKPTSSDSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVEAD 285 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +V R K + + Y + + G+ + ++ D+ Sbjct: 286 EVDSLMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKKAKAFID------DYLDSFPGV 336 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + + + A F+ T + Sbjct: 337 KQYMSDIVKDAKAQGFVETLL-------------------------------------HR 359 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 RR +P + + + RS R+ +NT + Sbjct: 360 RRYIPDITSRNF---------NLRSFA------ERTAMNTP------------------I 386 Query: 603 QAVSRDILAEGMMN------ATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNP 655 Q + DI+ M+ T ++L VHDE++ E P + + + + +M S Sbjct: 387 QGSAADIIKLAMVQFNKEVQHTDYHAKLLLQVHDELIFEVPKDEVASFSKFVEEIMESAL 446 Query: 656 SWAKGLPLKAE 666 +PLK + Sbjct: 447 K--LDVPLKVD 455 >gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14] Length = 871 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 74/504 (14%), Positives = 156/504 (30%), Gaps = 131/504 (25%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L + + G V+ + + +L++E+ + G + ++ Sbjct: 472 NEIEMPLVFTLYDMEQAGVKVEGEELKRYGEELGARIVELEKEIYEMA-GEEFNINSPKQ 530 Query: 239 LKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L LF + + T+T T VL P ++ R A + Sbjct: 531 LGVILFEKLEMPHAKKTKTGYSTAADVLDKLAPEYPIVAKILEYRQLAKLKSTY------ 584 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 +DG ++G R H + +Q IT +++P+ Sbjct: 585 ----ADG----LANYIGM------------------DGRIHSKFNQTITATGRISSTEPN 618 Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I + +R + EG V AD + IE R+LA +G++ ++A+ D++ Sbjct: 619 LQNIPVRMELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHR 678 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T ++ F+V +VT QR K + + Y + + ++ A ++ Sbjct: 679 MTASQVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISRKEAAQYIEHYF 735 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + + ++ ++ Sbjct: 736 -----------------------------------------ESYPGIKTFLDKCVSDAKE 754 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + + +RR +P + K N + R +N Sbjct: 755 --KGYAETLYGRRRPMPEL---KSSNFMQRSF------------GERVAMNAP------- 790 Query: 591 YTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M + ++L VHDE++ E +T+ Sbjct: 791 -----------IQGTAADIIKIAMIHVNEELKKRNLKSRMILQVHDELLIEADETE---L 836 Query: 645 SMLYHLMTSNPSWAKGL--PLKAE 666 + ++ A L PL + Sbjct: 837 EEVQQILQDKMEHAAELLVPLSVD 860 >gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 880 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 111/665 (16%), Positives = 205/665 (30%), Gaps = 155/665 (23%) Query: 46 DCVHDPVMP--QVLKEALENTDVT--IVAHN---------SYFERTVLKACFNLDIPIHR 92 D D + +VL++ D+ H S + K F I + Sbjct: 316 DLFSDEDIFYFEVLRDNYHREDIIGFAWGHGEQIYASTDLSLLSTDLFKKVFEKPIATYD 375 Query: 93 WICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--CKGETHECLYDRNK 147 + + VL G+ + L LS+ + E + F E + +Y + Sbjct: 376 FKRSKVLLSHLGIELVAPSYDARLANYLLSNVEDNELTTIARLFTDISLEADDSIYGKGV 435 Query: 148 PNHREAWRLFGEYCKGDVTV----------TREIFKRLEPLSSKEQELWYLDQTINDRGY 197 + + V V +++ E L + + G Sbjct: 436 KRAVPEKEVLLGHLARKVKVLLDSRAPMVEKLADHDQIDLYHEIELPLANVLAKMEIEGI 495 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLT 255 V+ A + + V L QE+ + G + ++L + LF + L LE T Sbjct: 496 KVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILFEKMQLPLEMTKKT 554 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T + ++L P A V L + ++ Sbjct: 555 KTGYSTAVDVLERLAPIAPIVAK----------------------------ILDYRQITK 586 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIA 370 L + H Q +T + DP+ I +R Sbjct: 587 LQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTP 645 Query: 371 S-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQ 428 S E L+ +D + IE RVLA ++G++ + AF G D++ +T R F + A VT + Sbjct: 646 SHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTAND 705 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + + Y +++ G+ + T + + + EN Sbjct: 706 RRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------YFERYPGIKAYMEN 756 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 A + ++ + ++RR++P Sbjct: 757 VVREAKDKGYV-------------------------------------ETLFKRRRELPD 779 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + R+ R R+ +N+ +Q + D Sbjct: 780 I--------------NSRNFNVRSF-AERTAINSP------------------IQGSAAD 806 Query: 609 ILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGL 661 IL M+N A ++L VHDEIV E P+ + L M + A + Sbjct: 807 ILKIAMINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTAIKKLVKDTMEAAVDLA--V 864 Query: 662 PLKAE 666 PL+A+ Sbjct: 865 PLRAD 869 >gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132] gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132] Length = 888 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 95/503 (18%), Positives = 161/503 (32%), Gaps = 130/503 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G +D A V+ + +L + + G + R ++L Sbjct: 489 ELEIPLIPVLVAMERAGISIDDAAFQAFLNDVNAQLDELTRSIIGYA-GEEFNIRSSQQL 547 Query: 240 KTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF + G+ T T T +VL + P V RM + L L Sbjct: 548 AVVLFDQLGIKAGSKTSTGLRSTANQVLEKIRDQHPIVDAVLEFRMLEKLRSTY-LEPLP 606 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + + DGRL H +Q+ T +S P+ Sbjct: 607 KMVGEDGRL-------------------------------HTHFNQLSTATGRLSSSQPN 635 Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R+C A+EG L AD + IE RVLA + + + AF ED++ Sbjct: 636 LQNIPIRGVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAFRHDEDIHA 695 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T A + + VT D+R K + L Y G QK+A + Sbjct: 696 RTAALIHDKDISAVTPDERRGAKTINFGLIYGMGV---QKLARELQIKQTEAQEF----- 747 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E++ + + + A F+ Sbjct: 748 -TEKYFAKMATLKAYYDTVVKDAETHGFV------------------------------- 775 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 +A +RR +P ++ + N + Q R+ Sbjct: 776 ------TTLAGRRRLLPELHSRN---------------------------NQLSAQARRQ 802 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA 644 ++Q + DI+ M+ A K G ++L VHDE++ E P+ + A Sbjct: 803 ------AVNTVIQGSAADIIKMAMVQAHKDKRLRELGAQLILQVHDELIIEAPEANIKEA 856 Query: 645 -SMLYHLMTSNPSWAKGLPLKAE 666 L +M + +PLK + Sbjct: 857 GGRLLEIMQTVAK--LDVPLKVD 877 >gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603] gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603] Length = 893 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 90/612 (14%), Positives = 170/612 (27%), Gaps = 131/612 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L++ L + + H++ L + + I LA P E L Sbjct: 373 LRQWLMDPHYPKIVHSAKEAWHALHSFSG---GVKGVIADTELAAYLAFPDQRSYGLEDL 429 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 + + + + + + Sbjct: 430 SI-RYVSRDITPVAHQAQGSLDLGLDDTDDALRALANRAAVLPQLAQALDAELSDRSLTA 488 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + + G VD+ +L+ + Q+ G + Sbjct: 489 LYQEMELPLTVVLAQMEHVGVAVDLEQLRSLDAFF-AHQGSEAQKAAFEAIGRQVNLGSP 547 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNT 293 ++L+ LF + + +T +S L + F + R + + Sbjct: 548 KQLQEVLFDQLDMPKTKKIKTGYTTDAASLADLFVKTGHPFLQHLLEYRDSTKLRQTVEG 607 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++++ DGR+ T Q + ++D Sbjct: 608 LLKSVADDGRVHTT-------------------------------FQQTVAATGRLSSTD 636 Query: 354 PDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + EG L+ AD + IE R++A ++ + + AF+ GED Sbjct: 637 PNLQNIPIRTETGRRIRQGFVVGEGLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGED 696 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 L+ AR F V+ +VT R+ K M L Y A ++ +++ + L+ Sbjct: 697 LHNFVGARVFGVSIDEVTPQMRSKVKAMSYGLAYGLSAF---GLSKQLNISVGEASTLMD 753 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 R + + L Sbjct: 754 DYFT--------------------------------------------RFGGVRDYLTSV 769 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + G RR LP L + RQ Sbjct: 770 VARARTTGYTETIMGRRRY---------------LP---------------DLTSDNRQ- 798 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PDTD 640 RE L I Q + D++ + M+ A ++L +HDE++ E P Sbjct: 799 RRENAERVALNAPI-QGSAADVIKQAMLGVDAAFRSEGLSSRLLLQIHDELIVEVAPGEQ 857 Query: 641 EFNASMLYHLMT 652 E ++ M Sbjct: 858 EIAERIVREEMA 869 >gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] Length = 890 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 89/553 (16%), Positives = 175/553 (31%), Gaps = 135/553 (24%) Query: 135 KGETHECLYDRNKPNHR-EAWRLFGEYCK-----GDVTVTREIFKRLEPLSSKEQELWYL 188 KG L ++ P+ R + + E ++ ++ L E L + Sbjct: 440 KGYALGGLIEKYLPDFRCDVEERYKEIAAFPALCDALSKELTEWEMGSLLHDIELPLSEV 499 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + + G+ VDVA T +++ VE ++ QE+ G + +L LF + G Sbjct: 500 LANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYA-GEEFNINSTRELGAILFDKLG 558 Query: 249 LHLEDLTETTCQRVLSSNKKL---TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L T+T + +KL P A V R + ++ + + L++ D R+ Sbjct: 559 LPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYR-KLTKLSSTYVTGLLKVTGPDQRVH 617 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----I 360 Q T +++P+ I + Sbjct: 618 SVF-------------------------------RQTETRTGRISSTEPNMQNIPIRTEL 646 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R +A G L+ AD + IE R+LA ++ + + AF G D++ T ++ F V Sbjct: 647 GSQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQVFGVP 706 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 + + R K + + Y G+ + + + + A +A+ Sbjct: 707 AEVLPAELRRRAKAINFGIVY--------------GIGAYSLSQDINVSVA-----EAKE 747 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 + + S V + N++ ++ ++ K + Sbjct: 748 YIENYLHTY-------------------------SGVRQYMNDIVESSAKS-GYVKTMFG 781 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 R R LP + N T+ Sbjct: 782 RVRH-----------------LP------------EITSSNHNTKAFGERVA-----LNT 807 Query: 601 IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTS 653 +Q + DI+ M+ ++L VHDE++ E D A ++ M Sbjct: 808 PIQGTAADIIKIAMVKVYRRLKEEGLSAQLILQVHDELLIEVSKADAPRAKVILKEEMEH 867 Query: 654 NPSWAKGLPLKAE 666 +PL + Sbjct: 868 AAD--LSVPLSVD 878 >gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 867 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 104/675 (15%), Positives = 210/675 (31%), Gaps = 164/675 (24%) Query: 29 CVILFAFGFDDHP--VELWD-----CVHDPVMP---QVLKEALENTDVTIVAHNSYFERT 78 V +F DD VE+ D + + + +K+ N + N F T Sbjct: 324 EVKAVSFATDDESFFVEVDDYEVFKLLDNEKLTLIGHDIKDFFVNLSYHGIELNCKFYDT 383 Query: 79 VLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136 + L+ + VL + +P+ +G+ S + K LI C Sbjct: 384 AIMTYL-LNPSESNYDIGRVLKKYLKEDIPNIEDMLGKGKSKKSYDDIDKKLLIDYLCAT 442 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + F E+ + L+ + E L + +++ G Sbjct: 443 ASKLSKLK-------DKLMSF--------IKEMEMEELLDNV---ELPLVEVLKSMEVYG 484 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 + +D + L++ + + K+ +++ G + ++L +LF + L T+ Sbjct: 485 FTLDKDVLKDLSKEIGEKTDKIIKDIYD-AAGYEFNINSTKQLSEFLFDKLNLPPIKKTK 543 Query: 257 TTCQRVLSSNKKLTP---QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T + +L P ++ R + ++ + M+ D ++ Sbjct: 544 TGYSTDMEVLVELIPYNEIVGEIIEYRQLMKLKSTY-IDGFMPIMDKDDKV--------- 593 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 H Q + +++P+ I +R Sbjct: 594 ----------------------HSTFKQTVAATGRISSTEPNLQNIPVRDEFGRRIRKAF 631 Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 I+S +G +V AD + IE RVLA ++ + +++F ED+++ T + F +AP +VT + Sbjct: 632 ISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEEVTGE 691 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 R K + + Y ++ ++ + Sbjct: 692 MRRRAKAVNFGIVYGISDY---GLSRDLKISRKEAKEYID-------------------- 728 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 R + N + + ENG RR Sbjct: 729 ------------------------NYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRY- 763 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 +P S Y R +NT +Q + Sbjct: 764 --------------IPEINSKNYNQRSFGERMAMNTP------------------IQGSA 791 Query: 607 RDILAEGMMNA------TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAK 659 DI+ M+ ++L +HDE++ +T PD E ++L +M + Sbjct: 792 ADIIKMSMVKVYNELKSRSLKSKLILQIHDELIVDTFPDEVEIVKNLLKTIMENVIK--L 849 Query: 660 GLPLKAE-GYESKRY 673 +PL + GY Y Sbjct: 850 RVPLVVDIGYGKNWY 864 >gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13] gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13] Length = 901 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 78/468 (16%), Positives = 150/468 (32%), Gaps = 71/468 (15%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 +K EN ++T V N ++ VLK PI T++++ + A Sbjct: 379 IKSITENENITKVGQNIKYDMHVLKNYDVTFKGPIE---DTMIMSYVIDSTESHGMDKLA 435 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K + ++ + K T + + + Y D VT ++++ L Sbjct: 436 KKYLDHDCISFESVVGKGVKQLTFDQV----------SIDDAYLYASEDADVTLQLYEHL 485 Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E I G + + H NQ + ++ L+ E Sbjct: 486 NKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQNQDLGLKILNLENEAYQ 545 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 + + ++L+ LF + + T +T + VL + +R Sbjct: 546 IA-EQPFNLSSPKQLREILFDKMKIIPTKKTPTGTPSTSEDVLEELSHDHALPKVILEHR 604 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ P R H + Sbjct: 605 SL-------------------------------SKLKNTYTDKLPKMINLNTKRIHTSYN 633 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +S+P+ I VR IA+ ++V D + IE R++A ++ + Sbjct: 634 QAVAITGRLASSEPNLQNIPIKTKEGRKVREAFIANTDSQIVSCDYSQIELRIMAHLSKD 693 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L AF ED++ +T + FN A V+ +QR KV+ L Y A + T Sbjct: 694 PGLLDAFNQNEDIHRSTASAIFNTNDASVSSEQRRFAKVINFGLIYGMSAFGLSQ---TL 750 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 ++ N+ + + E++ +N+ + E + G Sbjct: 751 NIDRNSAKNFID--QYFEKYPGVKNYMDQGKLVAKEQGYVETVFGRRL 796 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNP 655 Q + D++ M N K +++ VHDE+V E P+ + + + + +M++ Sbjct: 822 QGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDELVLEVPNAELDIIKTEIPKIMSNVA 881 Query: 656 SWAKGLPLKAE 666 + +PL A+ Sbjct: 882 T--LDVPLIAD 890 >gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1] gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1] gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2] gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1] gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2] gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1] gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2] gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1] gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1] gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1] gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4] gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1] gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3] gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3] gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1] gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1] gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1] gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2] gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1] gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1] gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2] gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1] gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2] gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3] gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2] gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3] gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1] gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1] gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1] gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2] gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3] gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2] gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2] gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1] gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3] gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2] gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1] gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1] gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2] gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1] Length = 892 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D V H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 882 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 95/491 (19%), Positives = 161/491 (32%), Gaps = 129/491 (26%) Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G VD+ TL T+ +E ++ G + ++L+ LF E G+ Sbjct: 492 ELEIAGVAVDLEQLTTLEAHYLSRVTQAAEEAYAVI-GKQINLGSPKQLQVVLFDELGMP 550 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGT 307 T+T + + L + F M R A + L++++ DGR+ T Sbjct: 551 KTKRTKTGYTTDAEALQGLFEKTEHPFLQHMLEHRDATKLRTTVEGLIKSVADDGRIHTT 610 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362 L Q I +++P+ I Sbjct: 611 -------------------------------LLQTIAATGRLSSTEPNLQNIPVRTEEGR 639 Query: 363 CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + EG +L+ AD + IE R++A ++ ++ ++AF +GEDL+ +R+F++ P Sbjct: 640 RIRDAFVVGEGFTELMTADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPP 699 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 ++T + R K M L Y A + + Sbjct: 700 EEITPELRYRVKAMSYGLAYGLSAYGLSQQLRIS-------------------------- 733 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 E K R + + LH +NG Sbjct: 734 ---------------------TEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKNGYTETVF 772 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 RR LP LN+ RQ RE L I Sbjct: 773 GRRRY---------------LP---------------DLNSDNRQ-RREMAERMALNAPI 801 Query: 602 VQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654 Q + DI+ M+N +A I+L VHDE+V E + ++ L M S Sbjct: 802 -QGSAADIIKVAMLNVHRALVEAKLKSRILLQVHDELVLEVAEGEKEQLEQLVREGMGS- 859 Query: 655 PSWAKGLPLKA 665 ++A +PL+ Sbjct: 860 -AYALAVPLEV 869 >gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] Length = 874 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 93/520 (17%), Positives = 145/520 (27%), Gaps = 133/520 (25%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 ++ + E L + + G VD A L +E+ +L Sbjct: 458 ETELAAQGLMQLYRTVELPLVPVLAAMEQTGVYVDRAALERERAAATERINALAREIHTL 517 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNR 280 G + ++L LF GL + +T T L + P V R Sbjct: 518 A-GAEFNISSPKQLGEILFEHLGLGSGKVKKTKTGYSTNAETLEGLRDQHPIIDNVLTYR 576 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 M ++ P R H + Sbjct: 577 M-------------------------------WTKLRSTYLDGIGALIRPATGRVHTSFN 605 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAG 394 Q +T +SDP+ I VR+ EG L+ AD + IE R+LA M+G Sbjct: 606 QTVTATGRLSSSDPNLQNIPVRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSG 665 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF G+D++ T A F V VT +QR K + + Y +A Sbjct: 666 DATLIDAFRHGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDF---GLARD 722 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G+ + E + F Sbjct: 723 LGIGRREAGGYID--RYFERYHGVRTF--------------------------------- 747 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 L + NG RR LP+ S Y Sbjct: 748 ---------LDKIVADAHTNGYVTTLYGRR---------------RALPALASRNYMQRS 783 Query: 575 N-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 R +NT +Q + D++ M+ A A I+L Sbjct: 784 FAERMAMNTP------------------IQGTAADLIKIAMVRAYDALQAADVKSRILLQ 825 Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 VHDE+V E + + L M+ A +PL + Sbjct: 826 VHDELVMEVTAEETETVTELLRTAMSGAAELA--VPLAVD 863 >gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1] gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2] gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1] gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1] gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2] gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1] gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1] Length = 892 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 190/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D V H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626] gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626] Length = 903 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 88/518 (16%), Positives = 159/518 (30%), Gaps = 132/518 (25%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E K LE + E L + + RG VD A ++ + + + + Sbjct: 489 KKLEDDKSLELFETIEMGLLPVLAAMERRGLFVDPAKLAEQSKELGADIASRVERIHE-A 547 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNR 280 G + +L LF GL L +T T +VLS V R Sbjct: 548 AGETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYSTNAKVLSDLADTYQIVADVLEYR 607 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 RA + L+ L + D R H + Sbjct: 608 ERAKIKSTY-LDALPALIRGD-------------------------------HRIHTTFN 635 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q + +SDP+ I + VR+ G + D + IE R+LA ++G+ Sbjct: 636 QTVAATGRLSSSDPNLQNIPTRSELGHRVRTAFTVPSGHVFLACDYSQIELRLLAHLSGD 695 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF++G D + T +R+F V +VT + R+ K + + Y A +A++ Sbjct: 696 EHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGIVYGQQAY---GLATSL 752 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 + ++ + + Sbjct: 753 KIPRAEAQDMID--------------------------------------------RYFA 768 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + L ++ E G A+ R K ++ R L+ Sbjct: 769 AYPGVRAYLDESVRIAHEKGYAVTMYGR-----------KRHIREFGQHNRQLIAF---G 814 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629 R+ +N Q + DI+ M+ K ++L +H Sbjct: 815 ERTAMNHPM------------------QGSAADIIKIAMIRVEKRLRKEGCAAKLILQIH 856 Query: 630 DEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 DE+ E P+ + E + ++ M +PL A+ Sbjct: 857 DELDLEVPNDEIEAVSRLVKETMEEVVE--LKVPLIAD 892 >gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633] gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633] Length = 883 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 82/504 (16%), Positives = 153/504 (30%), Gaps = 131/504 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + +G VD + + +++Q + L G + ++L Sbjct: 483 EMELPLSDILARMEIQGIRVDQNRLIEMGLQFEERLKEIEQTIYELA-GEEFNINSPKQL 541 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL +P + R A Sbjct: 542 GVILFEKMNLPVIKKTKTGYSTAVDVLEKLASQSPIVECILEYRQLA------------- 588 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + + + H Q +T + DP+ Sbjct: 589 ------------------KLNSTYVEGLQTY-IDEKGKIHTRFVQNLTQTGRLSSQDPNL 629 Query: 357 LQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I VRS + S KL+ +D + IE RVLA MA + ++AF+ D++ Sbjct: 630 QNIPIRTEEGRQVRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHT 689 Query: 411 TTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T R F + P +VT R K + + Y + + + Sbjct: 690 NTAMRVFGIQNPEEVTSSMRRQAKAVNFGIVYGISDYGLSQ---NLNIPRKKAKEFID-- 744 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + E A ++ ++ T Sbjct: 745 ----RYLEEFQGVKDYMETIVAEARQNDYVETLF-------------------------- 774 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +RR +P ++ + RS R+ +N+ Sbjct: 775 -----------HRRRYLPEIHSSNF---------NIRSFA------ERTAMNSP------ 802 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EF 642 +Q + DIL M+ + ++L VHDE++ E P+ + E Sbjct: 803 ------------IQGTAADILKVAMIELDRELTERNFQAKLLLQVHDELIFEVPEEEVES 850 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 S++ +M + S +PLKA+ Sbjct: 851 LQSLVEEVMENAVS--LSVPLKAD 872 >gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] Length = 896 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 91/539 (16%), Positives = 158/539 (29%), Gaps = 140/539 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL----------WYLDQT 191 L R L Y G ++ RL +E+ L + Sbjct: 443 LAGRPLAASDLPLELAIGYAAGRGQAAFRLWPRLHQQLQQEKLLRLYEDLELPVLRVLAA 502 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + RG VD+ + V+ E L++E+ + G + +L LF L Sbjct: 503 METRGIRVDLDFLQRFGREVEKELASLEEEIHEMA-GEPFLIQSPPQLAAILFDRLQLPT 561 Query: 252 EDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 + T+ +T VL++ P A +V R Sbjct: 562 QKKTKGRTAYSTDNEVLTALADYHPIAAKVIAYR-------------------------- 595 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361 + Q P R H Q + + DP+ I + Sbjct: 596 -----TLGKLKATYVDGLCKQVHPASGRIHTTFVQSVAATGRLSSRDPNLQNIPVRGELG 650 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + S G + D + IE R+LA + + L+AF+ GED++ T A F + P Sbjct: 651 AQLRQAFLPSSGYIFISGDYSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHP 710 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 V+++ R KV+ + Y A +A ++ + A Sbjct: 711 ELVSREMRRQAKVINFGIIYGMSAF---GLAKQLNVSQRLAQDFINRYFARH-------- 759 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIA 540 + + QA + + G + Sbjct: 760 ------------------------------------TGVKRYFDQALDTARQKGWVTTLL 783 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 +RR +P ++ S R+L RS LNT Sbjct: 784 GRRRPIPHLH------------SSNRNLRQE---AERSALNTPL---------------- 812 Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652 Q + D++ + M+ A ++L +HDE++ E P L M Sbjct: 813 --QGSAADLIKKAMLAVEAALVHEGLSGRLLLQIHDELLLEAPYQEQAATVDCLRRAME 869 >gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 883 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 104/634 (16%), Positives = 201/634 (31%), Gaps = 145/634 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110 + +K LE++ V ++ L I + ++L + + Sbjct: 362 KQVKAILESSTVQKNVFDAKRTYVGLYRS---SITLQNVDFDMLLVSYLLNTTNNSNDVG 418 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG------D 164 V + ++ K +E E+ + K + P E + K D Sbjct: 419 TVAKLHGFANIKTDE--EVYGKGAKKKI--------DPEAPEFFDHIVHKAKAIDQLHND 468 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + + E ++ ++ + G V+ + +++Q + Sbjct: 469 MFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQ 528 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L LF + L + T+T + +KL P A V Sbjct: 529 EA-GEEFNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIV-------- 579 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L + S+ S+ H Q +T Sbjct: 580 --------------------QNVLNYRQISKLQSTYIDGLLKVIHKNDSKVHTRYLQTLT 619 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398 + DP+ I +R + S E ++ +D + IE RVLA + G++ Sbjct: 620 QTGRLSSVDPNLQNIPVRSEEGRLIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNM 679 Query: 399 LKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 +AF GED++ TT R F +A VT + R K + + Y +A+ TG+ Sbjct: 680 QEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDY---GLANNTGI 736 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + ++ + + + E+ E A ++ T Sbjct: 737 SRKQAHQFIQ------RYFEEYPGVKKYTEDIVEFAKNHGYVET---------------- 774 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 IA +RR +P ++ + + RS R Sbjct: 775 ---------------------IAHRRRYLPDIHSRNF---------NLRSFA------ER 798 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIV 633 + +NT +Q + DI+ M+N +A ++L VHDE++ Sbjct: 799 TAMNTP------------------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELI 840 Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 E P+ + L +M S +PLK E Sbjct: 841 FEVPNDEMETVEKLIPKVMDSAIK--LNIPLKVE 872 >gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] Length = 874 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 81/484 (16%), Positives = 150/484 (30%), Gaps = 125/484 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + + G VDV + + + ++++E L + ++L Sbjct: 474 DLELPLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQLVDEPSLNLSSPKQL 533 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVE 296 LF + L T+T + L F +++ A R + L++ Sbjct: 534 SVVLFDKLELPKTKKTKTGYSTAAGEIEALAETNPHPFLDKLLAHREYQKMKSTIEGLIK 593 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A+ +GR+ H Q + ++DP+ Sbjct: 594 AVADNGRI-------------------------------HTTFKQTVASTGRLSSTDPNL 622 Query: 357 LQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +RS G + L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 623 QNIPVRTEAGRKIRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDLHN 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 +R F+V QVT + R K M L Y A +++ ++ Sbjct: 683 FVGSRVFDVPIDQVTPELRRRVKAMSYGLVYGLSAY---GLSNQLSISAGEA-------- 731 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 K R + + L EQ Sbjct: 732 ------------------------------------KSIMESYFERFGGVKSYLDNVVEQ 755 Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +G + + +RR +P + T+ ++ R Sbjct: 756 ARRDGYTSTVFGRRRYLPEL--------------------------------TSDNRVAR 783 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNAS 645 E L I Q + DI+ M+ +A ++L VHDE+V E + Sbjct: 784 ENAERAALNAPI-QGSAADIIKVAMIRVDRALESFNSRVLLQVHDELVVEIAPGELAEVR 842 Query: 646 MLYH 649 + Sbjct: 843 EIVE 846 >gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612] Length = 421 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 84/492 (17%), Positives = 155/492 (31%), Gaps = 110/492 (22%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L + + G +D+ L++ + ++ ++ L+ + + Sbjct: 2 YEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELS-EENFNLSSPK 60 Query: 238 KLKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 +L LF + L + +T T VL + +R + ++ Sbjct: 61 QLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLTKLLSTY-ID 119 Query: 293 TLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L +N GR+ A+ TGR S QN+P + Sbjct: 120 ALPNLINEKTGRVHTNFNQ-AATATGRLSSSNPNLQNIPVRTE----------------- 161 Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 S +R + + KL+ AD + IE R+LA +A E+ + AF +D++ Sbjct: 162 --------FSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSL 213 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T F ++ D+R +GK + + Y G +K A +TG+++ + Sbjct: 214 TAKLIFEKEV--ISSDERRVGKTINFGVIYGMG---IKKFARSTGVSIPEAKEFL--IKY 266 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + F E A+ ++ T R ++ Sbjct: 267 KERYSKIFKFL----ELQERLALSKGYVKTIFGRKRE----------------------- 299 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 K DKN L ++ + R Sbjct: 300 -------------------FKFDKNGLGRLIGKDPY-------------EIDLQSARRAG 327 Query: 592 TYGGKL---TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDE 641 L +Q S DI+ M+ K ++L VHDE++ E PD+ E Sbjct: 328 MEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEPDSLE 387 Query: 642 FNASMLYHLMTS 653 ++ M Sbjct: 388 ITTKLVKKTMED 399 >gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2] gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2] Length = 888 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 85/550 (15%), Positives = 185/550 (33%), Gaps = 71/550 (12%) Query: 7 DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALEN 63 D ET +D K ++ F+F + + H+ + L +ALE Sbjct: 324 DTET-DDLDTKKA---------NLVGFSFAYSEEKAYYVPIGHNYLGVGDQVGLDKALEA 373 Query: 64 TDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 + HN F+ ++L +D + T++LA S++ A + Sbjct: 374 ISKIFEHTIIGHNLKFDLSLLYRY-GID-EKKDIVDTMILAWLVDPGSSVGLESVAKRFL 431 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 M KE + + + + D + ++ Sbjct: 432 DHDMIAYKETVKKGEDFSQVSIDAACKYASEDAVITYMVYFKLLDALRKQGASHLIDEAK 491 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E + G +D+ L ++ ++ Q++ G + ++L Sbjct: 492 KVEFPFVNTLIHMEQAGIKIDIPFFEELKSSLEKRIDEITQKIYEYAGG-EFNINSTKQL 550 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L T++ + L + K P + R + Sbjct: 551 AAILFEKLKLPPLKKTKSGYSTNETTLQALKDKHPIIPLLLEYRELYKLKSTY------- 603 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + + + + R + Q T + +P+ Sbjct: 604 -------IDPLINY---------AKRDP-------KHRIYTSFIQTGTATGRLASKNPNL 640 Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I + +R IA EG+ L+ D + IE R+LA + + L+AF+ G D+++ Sbjct: 641 QNIPIKTELGRKIRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQKGRDIHME 700 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F + K++R I K + L Y G+ +K+A T G++ ++++ A Sbjct: 701 TAIKLFGK---EHAKEKRNIAKSINFGLIYGMGS---RKLAETLGISTKEAKAIIESYFA 754 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + +++ ++ H ++ T +R ++ + H+ ++L L +A Sbjct: 755 S--FPTVKSYLESVENFAKTHG----YVETLLKR-RRYFDFAHASGAQLAAYLREATNTV 807 Query: 532 IENGKAIIAR 541 + A + + Sbjct: 808 FQGSAADLIK 817 >gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] Length = 878 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 109/699 (15%), Positives = 218/699 (31%), Gaps = 177/699 (25%) Query: 10 TRSPIDLTKCGICKYAED----VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVL 57 + + +D +A+D ++ + F + + ++ + ++ L Sbjct: 304 SYTEVD--SLSADMFADDQFFYFEILGDNYHVENIIGFAWGNDKA-IYASTNLDLLKDDL 360 Query: 58 KEALENTDVTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 +A + F+R+ VL + F +D+P LA+ Sbjct: 361 FKAALAKPIKTY----DFKRSKVLLSHFGVDLPAP--AFDSRLAKYL------------- 401 Query: 117 KLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWRLFGEYCKGDVTV----TRE 170 LS+ E + + ++ E +Y + + Y + V + Sbjct: 402 -LSTVDDNELSTIARLYTDYVLDSDEAVYGKGVKRAVPEKSVLLSYLARKIVVLNHSEKV 460 Query: 171 IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + +L L EQ L + + G V A + +L QE+ Sbjct: 461 MLDKLTEHQQASLLFDMEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYD 520 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282 L G+ + ++L LF + L T+T + ++L P + V Sbjct: 521 LA-GMEFNINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSK---- 575 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 L++ ++ L + + H Q Sbjct: 576 ------------------------ILEYRQIAKLQSTYIVGLQDFIL-QDGKIHTRYLQD 610 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396 +T + DP+ I +R + E + L+ +D + IE RVLA ++ ++ Sbjct: 611 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPETEDEVLLSSDYSQIELRVLAHISNDE 670 Query: 397 WKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF G D++ +T R F + VT + R K + + Y +A+ Sbjct: 671 HLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGIVYGISDY---GLANNL 727 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ ++T Sbjct: 728 GIPRKVAKQYIETYF--------------------------------------------E 743 Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + N + + + G + +RR++P + + R+ R Sbjct: 744 RYPGIKNYMERVVRDAKDKGYVETLFHRRRELPDI--------------NSRNFNIRQF- 788 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628 R+ +N+ +Q + DIL M+N KA D ++L V Sbjct: 789 AERTAINSP------------------IQGSAADILKIAMINLDKALVDGQFKTKMLLQV 830 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 HDEI+ + P + E +++ M S +PL A+ Sbjct: 831 HDEIILQVPKDELEAVKTLVKETMESAID--LSVPLIAD 867 >gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1] gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1] Length = 869 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 110/641 (17%), Positives = 204/641 (31%), Gaps = 148/641 (23%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 Q L++ + ++N +L A +N I I L LA PS + Sbjct: 352 QDFLNYLKDEKYSKYSYNIK--AQILSARWN-GIDIKGMNFDLQLASYILNPSLKDEMKS 408 Query: 115 ALKLSSQK-MEEGKELIARFCKGETHEC-LYDRNKPNHREAWRLFGEYCKGDVTVTRE-- 170 ++ +E+ + K E L R+ + +A + + + Sbjct: 409 ICDYYDYDSVQYEEEVFGKLAKKHIPEIDLLARHTVSKAKAIYDLKDEAIQRLKDEEQFD 468 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 +++ L E + Y+ + G +D+ + + + + ++++++ L Sbjct: 469 LYQNL------ELPVTYILADMEYVGAKIDIHVLKEMEMDFEQQIKQIEEDIYMLAD-KE 521 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF GL T+T Q +L + L P + RM Sbjct: 522 FNISSPKQLGEVLFERLGLPNGKKTKTGYSTSQDILEKIEGLHPIIPLIQKYRML----- 576 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 ++ Q + H +Q +T Sbjct: 577 --------------------------TKLSSTYVKGLQEQVFA-DGKIHTIYNQALTQTG 609 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + +P+ I +R I S LV D + IE R+LA +AG Q ++AF Sbjct: 610 RLSSIEPNLQNIPVRQEEGKLIRKAFIPSHDY-LVTFDYSQIELRILAHLAGVQSLIEAF 668 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +D++ T A F V +VT + R K + + Y G K++ G++L Sbjct: 669 NQDKDIHTHTAALVFKVKDEEVTANMRRQAKAVNFGIIYGMGEF---KLSQQIGVSLKEA 725 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 F R E +PE + Sbjct: 726 KE----------------FIRRYFEEYPEIKV---------------------------- 741 Query: 523 ELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + Q E G + + ++R +P + DKN ++ Sbjct: 742 YMDQIVEDCKNTGYVSTVLNRKRYIPTI---NDKNFMVRE-------------------- 778 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635 Q R +Q DIL MM +++L VHDE++ + Sbjct: 779 ----QARRFAMNSP------IQGSGADILKLAMMKVNQLMKDKHLKSEMILQVHDELIFD 828 Query: 636 T--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG-YESKRY 673 + DE ++ M ++ +PLK +G Y S Y Sbjct: 829 VYKDELDEM-MKLIKSAMVE--AFQMDVPLKVDGAYASNWY 866 >gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649] gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649] Length = 889 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 104/598 (17%), Positives = 177/598 (29%), Gaps = 159/598 (26%) Query: 114 EALKLSSQKMEEGKELIARFCKGETHE----CLYDRNKPNHREAWRLFG----------- 158 EA + + + L A K + L R+ +A G Sbjct: 392 EARGMPLRGVTMDTALAAYLVKPDQRSFDLADLVVRHLGRELKAEEHAGGQGLLDFDTDE 451 Query: 159 EYCKGDVTV-TREIFKRLEPLSSK-------------EQELWYLDQTINDRGYCVDVALA 204 E D V R + PLS + E L + + G VD Sbjct: 452 EVVGQDAMVRARAVLDLSVPLSEQLEATGGTELLRDIELPLVDILGAMERTGIAVDTDAL 511 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 L D + + + G + ++L+T LF GL T+T Sbjct: 512 SALEADFDAKVREAQLDAYEAIGGDEINLGSPKQLQTVLFETLGLPKTRRTKTGYTTDAD 571 Query: 265 SNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 + L + F M R A + + L++++ D R+ T Sbjct: 572 ALTDLYAKTQHPFLEAMLRHRDAMRLRVTVEGLIKSVAEDQRIHTT-------------- 617 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK- 375 Q I ++DP+ + +R + +G + Sbjct: 618 -----------------YIQTIAATGRLSSTDPNLQNVPIRTEAGRRIREVFVVGKGYES 660 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++G++ ++AF TGEDL+ AR F V P VT + R+ K M Sbjct: 661 LMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPEDVTAEMRSKVKAM 720 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y A ++ ++ L Sbjct: 721 SYGLAYGLSAF---GLSKQLTISTGEAQGL------------------------------ 747 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKD 554 + +R + + L + + G A + +RR +P + Sbjct: 748 --------------MDEYFARFGGVRDYLREVVGEARATGYTATMLGRRRYLPDLTSDNR 793 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + R G R LN +Q + DI+ M Sbjct: 794 Q---------------RREGAERMALNAP------------------IQGSAADIIKLAM 820 Query: 615 MNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 A ++L VHDE+V E + + + L M +PL Sbjct: 821 KGVDSALRESGAKSRMLLQVHDELVLEVAEGERDDVEALVRAEMGRAVE--MDVPLDV 876 >gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] Length = 877 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 84/545 (15%), Positives = 181/545 (33%), Gaps = 72/545 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112 + K+ L + ++ ++ R ++ + I I L++A P+ Sbjct: 356 EAFKKWLADDEMRKYTFDAK--RAIVALKW-KGIEIQGIDFDLLIAAYLLDPADTDKDFR 412 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTV--- 167 A + ++ +E+ + K R P + DV Sbjct: 413 AVAKMKETHAVKSDEEVYGKGAK---------RAVPAQDIVAEHVARKVHVLYDVQKTFV 463 Query: 168 -TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + ++ E + E L + + +G VD ++ + +++QE+ L Sbjct: 464 EELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELA 523 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF L + T+T VL + ++ + R Sbjct: 524 -GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMEHHEIIPKILHYRQL- 581 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ ++ D S+ H +Q++ Sbjct: 582 GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQVL 611 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 T ++DP+ I +R I S EG + AD + IE RVLA +A ++ Sbjct: 612 TQTGRLSSTDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKG 671 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF+ D++ T F V +VT + R K + + Y + G+ Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGI 728 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + E++ + + + + A + ++ T R ++ + SR Sbjct: 729 TRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR-RRYIPEITSRN 781 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 L + + T G A K+ + + +++ L+L L++ Sbjct: 782 FNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEE 841 Query: 577 RSYLN 581 L Sbjct: 842 VEKLE 846 >gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b] gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b] Length = 864 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 98/578 (16%), Positives = 191/578 (33%), Gaps = 66/578 (11%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y E+ VI A + V + D + +KE +E+ T + ++ LK Sbjct: 320 YFEE-DVIGVAIASERG-VTIGDVTLLED--ERVKEWIEDETKTTICLDAKQTIIQLKRH 375 Query: 84 FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK-GETHECL 142 + + + LV L ++ + +EE + + + K E + Sbjct: 376 ---QLALRGYEDLLVAGYLLNLSGG-TSLSSIAAHFTYPLEEDETVYGKGAKIKVPEENV 431 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + + +A+ ++ + V + ++ E + E+ L + + G V+V Sbjct: 432 FHAHLA--EKAYAIYTLF--ERVVSELKENEQTELYEALEKPLVSVLAEMEWAGIHVNVE 487 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259 + + L+ + L G + ++L LF + L T+T T Sbjct: 488 TLQHMETDLRERLNALEITIHELA-GEPFNINSPKQLGVVLFEKLSLPPVKKTKTGYSTA 546 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL L P ++ + R + + L + + DG++ Sbjct: 547 ADVLEKLAPLHPIIEKIMHYR-ELGKLQSTYVEGLQKVVKDDGKI--------------- 590 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-G 373 H Q +T + +P+ I +R ASE G Sbjct: 591 ----------------HTRYTQTLTQTGRLSSVNPNLQNIPIRLEEGRRIRKAFTASEPG 634 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L D + IE R++A M+ ++ + AF ED++ +T A F V+ +VT R K Sbjct: 635 WVLYAVDYSQIELRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAK 694 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + G+ + T E++ + F E EH Sbjct: 695 AVNFGIIYGISDYGLSQ---NLGITRKEAQTFIDT--YFEQFPGVKTFMDAAIERAREHG 749 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 F+ T +R ++ HSR L + T G A K+ + + + Sbjct: 750 ----FVETMLKR-RRNIPDIHSRNFNLRGFAERTAINTPIQGTAADIIKKAMIDVDHALN 804 Query: 554 DKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 L+L L++ L + + Sbjct: 805 ASKLQSKLLLQVHDELIFEGPTEEMEALEKLVTEAMEQ 842 >gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 942 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 81/514 (15%), Positives = 161/514 (31%), Gaps = 131/514 (25%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + +RL E L ++ + G+ V+ Q + ++ QE+ L G Sbjct: 533 MQEMERL--YQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLA-G 589 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL T+T VL + ++ + R+ A Sbjct: 590 TSFNLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAKL 649 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + + R H Q +T Sbjct: 650 QSTY-VEGLLKVIRKE------------------------------TGRVHTRFHQTLTA 678 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I +R + + + AD + IE R+LA ++G++ + Sbjct: 679 TGRLSSSEPNLQNIPIRLEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 738 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF D++ T A F V P QVT R K + + Y +A + Sbjct: 739 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDF---GLAQNLNIPQ 795 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +++ + Sbjct: 796 KEAKRFIES--------------------------------------------YFEKFPG 811 Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + +Q E G + +RR +P ++ + + RS R+ Sbjct: 812 VKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQ---------LRSFA------ERT 856 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 +NT +Q + D++ M+ +A ++L VHDE+ Sbjct: 857 AMNTP------------------IQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDEL 898 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + E P + +L N + +PLK + Sbjct: 899 IFECPKDELAALEVLVRDNMEN-AMTLSVPLKVD 931 >gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] Length = 857 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 68/389 (17%), Positives = 132/389 (33%), Gaps = 45/389 (11%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 EQ L + + G +D + + + + KL E+ G + ++L Sbjct: 457 EVEQPLIEVLAEMEKNGISIDEENWKKVRKSMKEKEEKLLLEIYREA-GEEFNVNSPKQL 515 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + G+ T+T + L Sbjct: 516 SHILFDKMGMPTGKKTKTGYSTAADVLESLAIDYP------------------------- 550 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 ++ L++ ++ P R H +Q++T +SDP+ I Sbjct: 551 ---FVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNI 607 Query: 360 I-----SDCVRSCVIASEGKKL-VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +RS + EG + +D + +E RVLA M+G++ ++AFE ED++ T Sbjct: 608 PVRTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTA 667 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V +VT +QR+ K + + Y ++ G++ +KT + Sbjct: 668 SEVFGVPFEEVTSEQRSHAKAVNFGIIYGISDF---GLSKQLGISRKKADEYIKT--YLK 722 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + F + M E A + + T R + +S+ + + + T Sbjct: 723 RYPGIHEFMKKMT----EEARKTGKVKTLFGRY-RDLPDINSKNFQRRSFAERTAMNTPI 777 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILML 562 G A K + + K +L Sbjct: 778 QGSAADIMKIAMIQVYEKMKKGKYKSRIL 806 >gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2] gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2] Length = 892 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 191/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + + A L + D V H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4] Length = 876 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 87/575 (15%), Positives = 196/575 (34%), Gaps = 84/575 (14%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 + +G + + + +E L + V +++ LK + ++ Sbjct: 332 IIGYGLSNQSGHYFIPTDIASESEGWQEWLRDESKEKVVYDAKKSIVALKRQ---GLELN 388 Query: 92 RWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 +LA P+ +VG+ LSS + +E ++ + K Sbjct: 389 GVSFDSLLAAYIINPAQNHEDFASVGKEYGLSSVQSDE--QVYGKGAKQAVPN------- 439 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGY 197 E+ ++ ++ ++L+ + E L ++ + +G Sbjct: 440 ------LDALSEHVARKASMLWDLTEKLKTALKENHQDALFFDLELPLAFILGEMEYQGV 493 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 VD ++ + + + +L++++ L G + ++L LF + L + T+T Sbjct: 494 KVDRTRLTSMGKELGGKLKELEEKIYDLA-GETFNINSPKQLGVILFEKLELPVIKKTKT 552 Query: 258 TCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 VL + + + R + + L++ ++ D Sbjct: 553 GYSTSADVLEKLQSKHEIVEYILHYRQL-GKLNSTYIEGLLKVIHED------------- 598 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI 369 + H +Q +T ++DP+ I +R + Sbjct: 599 -----------------SDKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV 641 Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428 S EG + AD + IE RVLA ++G++ ++AF+ ED++ T F+V+ VT + Sbjct: 642 PSKEGWVIFAADYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEM 701 Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488 R K + + Y + + + + E + D + E+ Sbjct: 702 RRHAKAVNFGIVYGISDFGLSQ---SLNITRKEAGEFI------ERYLDTYPAVKEYMED 752 Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 A + ++ T R ++ + SR L + + T G A K+ + + Sbjct: 753 IVVEARDKGYVSTLLNR-RRYIPELTSRNFNLRSFGERTAMNTPIQGSAADIIKQAMIDM 811 Query: 549 VYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLNT 582 +++N L+L L++ + L T Sbjct: 812 AKRLEEENIEAKLLLQVHDELIFEAPQSEIEKLKT 846 >gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] Length = 879 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 78/500 (15%), Positives = 160/500 (32%), Gaps = 125/500 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L ++ + G VD + T+L+ + L G + ++L Sbjct: 481 DIEMPLVFVLYDMECEGIMVDSKGLKEYGDKLATRITELENTIYELA-GTKFNINSPKQL 539 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 T LF + L T++ +KL P+ V Sbjct: 540 GTVLFEDMKLPSGKKTKSGYSTAADVLEKLAPEYPVVAK--------------------- 578 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L++ ++ L R H +Q IT +++P+ I Sbjct: 579 -------ILEYRQLTKLKSTYADGLAVYIL-EDGRIHGHFNQTITATGRISSTEPNLQNI 630 Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 I +R + G + AD + IE R+LA M+ + + A+ T +D++ T + Sbjct: 631 PVRMEIGRQIRKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITAS 690 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F+V +VT+ QR+ K + + Y + + ++ + ++ Sbjct: 691 QVFHVPLDEVTRTQRSNAKAVNFGIIYGISSFGLSQ---DLSISRKEASEYIE------- 740 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + + E + L + ++ Sbjct: 741 ----------------------------------QYFATYPHIKEFIDGLVASAKK--NG 764 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 + +RR VP + N + R +N+ Sbjct: 765 YSTTMFGRRRPVPEL---NSSNFMQRQF------------GERIAMNSP----------- 798 Query: 595 GKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY 648 +Q + DI+ M+N ++A ++L VHDE++ ET + + + Sbjct: 799 -------IQGSAADIIKIAMINVSRALKDNNLKSKMILQVHDELLIETYEDE---VDAVR 848 Query: 649 HLMTSNPSWAKGL--PLKAE 666 ++ N + A L PL+ + Sbjct: 849 QILIDNMTNAASLRVPLEVD 868 >gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1] Length = 892 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 191/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + + A L + D V H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3] Length = 857 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 108/647 (16%), Positives = 194/647 (29%), Gaps = 160/647 (24%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94 + D V L + L L+N DVT+ NS + + W Sbjct: 345 YAVQDTTVYLLEDA-------ELLRLLDNADVTLDVFNSA-------PLYAKAMAAGGWG 390 Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 ++V +G +A A K ++ + A F ++ +A Sbjct: 391 SSIVW---DGKLAAYLLDASASKYQISELIPAYKAAAAF------------TCTDYPDAG 435 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 RL + + +T L + E L + + G VD + E Sbjct: 436 RLADLFARMKAEITACGEDAL--YNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREE 493 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQ 272 ++ + T + ++L LF GL T+ + + L P Sbjct: 494 LEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLREYPL 553 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + + L++ + DG Sbjct: 554 VEDVLQYR-AYQKLNSTYVEGLLKVIGEDG------------------------------ 582 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q + +P+ I + +R+ +A G LV AD + IE R Sbjct: 583 -RIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLVDADYSQIELR 641 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA + G++ +AF GED++ +T A+ + + ++VT R+ K + + Y GA + Sbjct: 642 ILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYS 701 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G+ + + Sbjct: 702 LS---KDIGVTVKEA-----------------------------------------DAFL 717 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 K + VS + + NG RR LP S Sbjct: 718 KNYLAAFPNVSG---YMDKTIADAKANGYVSTLFGRR---------------RTLPELAS 759 Query: 568 LVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKA 620 + R NT +Q + D++ M+ K Sbjct: 760 TNFNVRASGERMARNTP------------------IQGTAADVIKLAMVRVWKRLRDEKM 801 Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666 ++LTVHDE++ E P+ + A+ +L M +A +PL + Sbjct: 802 ASRLILTVHDELIVEAPEVEAEQAARILREEMEGCVQYA--VPLSTD 846 >gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] Length = 867 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 86/515 (16%), Positives = 170/515 (33%), Gaps = 133/515 (25%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 RE+++ E L + + + G VD + + + ++ + + Sbjct: 462 KERELYR------EIELPLVFTLHEMEESGILVDREALLSYGAELREKIGEIRERIYREA 515 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRA 283 G + ++L LF + GL T+T +KL+ + A + R Sbjct: 516 -GEEFNLNSPQQLGQILFEKLGLPGGRKTKTGYSTAADVLEKLSEENQLASDILEYRT-Y 573 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S+ L+ + DGR+ G +Q++ Sbjct: 574 SKLNSTYAEGLLSWIREDGRIHGHF-------------------------------NQMV 602 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T ++DP+ I R I EG + AD + +E R+LA ++G++ Sbjct: 603 TATGRISSTDPNLQNIPIRTEMGRRFRRVFIPKEGSIFIDADYSQVELRILAALSGDEKL 662 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++A++ +D++ T + F+V ++VT R K + + Y A ++ ++ Sbjct: 663 IRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVYGISAF---GLSEGLSIS 719 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + E + + + + E A + ++ T Sbjct: 720 RQEAKEYI------ERYFETYPGVKKFLDGEVELARKQGYVRT----------------- 756 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 I ++R VP + S + R G R Sbjct: 757 --------------------IFGRKRPVPDI--------------SSSNFARRSFGE-RV 781 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632 +N+ +Q + DI+ + M ++A IVL VHDE+ Sbjct: 782 AMNSP------------------IQGSAADIMKKAMNEVSRALKAGAFRARIVLQVHDEL 823 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 + ETP+ + L L N + +PL A+ Sbjct: 824 LLETPEKEADQVEELLILSMQNAA-KLRVPLIADA 857 >gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] Length = 900 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 105/611 (17%), Positives = 215/611 (35%), Gaps = 100/611 (16%) Query: 7 DFETRS-PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVLKE 59 D ET S + K ++ F+F F+++ H + V + K Sbjct: 337 DTETTSLDTKIAK-----------IVGFSFCFNENSAYYIPIAHSYLGAPEQVSIEDAKS 385 Query: 60 ALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 A+ + ++ N ++ ++K FN DI ++ + T++LA S + A Sbjct: 386 AINKLNNFKLIVQNFKYDFDIIK--FNFDIELNLFADTIILAWLLDSSSKVGLDALAKNY 443 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-KRLEP 177 M K+++ KG+ + N Y D +T +I+ K LE Sbjct: 444 FDHTMIAFKDVVK---KGDDFSTVDISN----------ACNYAAEDALMTYKIYFKLLEE 490 Query: 178 LSSK--EQ--------ELWYLDQTINDR--GYCVDVALAHTLNQIVDVERTKLDQELESL 225 + E E ++D IN + G +D + L +L +++ L Sbjct: 491 FKKQNCEHLLKIANDYEFKFIDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTKKIHEL 550 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF GL +T VL+ + + R Sbjct: 551 A-GTKFNINSPKQLGVILFENLGLTASKKGKTGYSTNEVVLNKLVDSHEIIPVILDYR-E 608 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L+E ++D ++ + Q Sbjct: 609 AYKLQSTYIEPLLELASNDSE-----------------------------NKIYTSFLQT 639 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 T + +P+ I +R IA +G KLV D + IE R+LA + ++ Sbjct: 640 GTATGRLSSKNPNLQNIPVKSSAGREIRKAFIARDGYKLVGIDYSQIELRLLAHFSKDKA 699 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF + D++ T + F + +R I K + L Y G+ +K+A T + Sbjct: 700 LVDAFNSDLDIHSQTAVKIFG---EEKASQKRNIAKTINFGLLYGMGS---KKLADTLKI 753 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + + + +A + ++ + A+E+ ++ T +R ++ + + Sbjct: 754 TPKEAKVYIDS------YFEAFTNVKEYMKSIEDFALENGYVETLIKR-RRIFDFNAANT 806 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + L +A T G A K + + K+ +L ++L L++ + Sbjct: 807 MQRIGYLREAV-NTKFQGSAADLIKLSMIKIFEKYKNNEDLKMILQIHDELIFEVKNEKQ 865 Query: 578 SYLNTTTRQLT 588 + +++ Sbjct: 866 DEITNDLKKIM 876 >gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2] Length = 888 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 113/666 (16%), Positives = 201/666 (30%), Gaps = 160/666 (24%) Query: 27 DVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 DV ++ + D + D L AL + + + + +T +KA + Sbjct: 343 DVRILAVSGAPD--EAWVVDLAEAGEADVSKLSSALRSKTLILHS-----SKTQIKAWRS 395 Query: 86 LDIPIHRWICTLVLARSNGLPS---------ALKAVGEALKLSSQKMEEGKELIARFCKG 136 L + + LA +P AL+ G L S + +L Sbjct: 396 LGLDVDDVAGDTALAAYLLVPDQRSYELQQIALERAGIEL---SDAESDSGQLALDLESD 452 Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 +T + R L K D ++++ E L + + G Sbjct: 453 QTAQTHGHRAAALLEVHDILA---AKIDEANMSQVYR------DIELPLVPVLARMELAG 503 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD A L + EL G + ++L+T LF E + T+ Sbjct: 504 IAVDEAGLSGLIDEFTK-QANASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTKRTK 562 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL---VEAMNSDGRLRGTLQFLGA 313 T + +L + F + A R + T+ ++ + DGR+ T Sbjct: 563 TGYTTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQTVVGLLKTVAEDGRIHTT------ 616 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 617 -------------------------YQQTVAATGRLSSLDPNLQNIPVRTESGRRIREIF 651 Query: 369 IASE---GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 IA +L+ AD + IE R++A ++G+ ++AF+ GEDL+ ++ F V +V Sbjct: 652 IADPHVDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVD 711 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R+ K M L Y A + + Sbjct: 712 SAMRSKVKAMSYGLVYGLSAYGLSRQLAI------------------------------- 740 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRR 544 + K Q R + + L + EQ NG I +RR Sbjct: 741 ----------------GVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIMGRRR 784 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 +P ++ + R+ R+ L I Q Sbjct: 785 YLPALH--------------------------------SDRRQLRDMAERAALNAPI-QG 811 Query: 605 VSRDILAEGMMNATKAGYD----IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAK 659 + DI+ M+ + D ++L VHDEI+ + P+ + ++ M S Sbjct: 812 SAADIMKIAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSAFE--L 869 Query: 660 GLPLKA 665 +PL Sbjct: 870 DVPLDV 875 >gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7] Length = 877 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 89/558 (15%), Positives = 172/558 (30%), Gaps = 141/558 (25%) Query: 136 GETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSK----------EQE 184 + L E FG Y + + + L+ + E Sbjct: 423 PSRADWLKKMTLTEASEKEKESFGHYLAYSAMIPVQAYSTLKKRLEETGMDRLFDEIEMP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L Y + G V+ + +L++ + L G + ++L LF Sbjct: 483 LVYALYDMEKAGIAVEKDALAEYGSRLTGRIDELEKNIYELA-GESFNINSPKQLGIILF 541 Query: 245 LETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + GL T+T +L + P Q+ R Sbjct: 542 EKLGLPFAKKTKTGYSTSADILEKLRTYDPIVGQILEYRQL------------------- 582 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-- 359 ++ P R H + +Q IT +++P+ I Sbjct: 583 ------------TKLKSTYADGLAGYIRPDDQRIHGKFNQTITATGRISSTEPNLQNIPV 630 Query: 360 ---ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 + +R + E V AD + IE RVLA MAG++ ++A++ +D++ T ++ Sbjct: 631 RMELGRLIRKVFVPKEDCIFVNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRMTASQV 690 Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476 F+ +VT QR+ K + + Y + + S T + Sbjct: 691 FHTPFDEVTPAQRSNAKAVNFGIVYGISSFGLSQDLSITK-------------------K 731 Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536 +AEN+ + + + L ++ E E G Sbjct: 732 EAENYIQQYFRTY-------------------------PGIKAF---LDRSVEDAKEKGY 763 Query: 537 AI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 A+ + +RR VP + N + R +N+ Sbjct: 764 AVTLFGRRRPVPEL---LSSNFMQRSF------------GERIAMNSP------------ 796 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCE-TPDTDEFNASMLY 648 +Q + DI+ M+ + ++L +HDE++ E D + ++L Sbjct: 797 ------IQGTAADIIKIAMVRVNRRLKRQHMKSRLILQIHDELLIEAVLDEVDAVKAILK 850 Query: 649 HLMTSNPSWAKGLPLKAE 666 M + A +PL+ + Sbjct: 851 EEMEHAATLA--VPLEID 866 >gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f] gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f] Length = 891 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 95/604 (15%), Positives = 173/604 (28%), Gaps = 131/604 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118 L + D H+ L + LA LP + L+ Sbjct: 376 LADPDRAKAGHDLKGPMLALAEA---GFTLAGVTSDTALAAYLALPGQRSFDLADLTLRY 432 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 ++++ E + D + + A D + R RL L Sbjct: 433 LHRELKSDTETNGQLT--LDGSGEADEAEADAIRARAALELAAALDGDLERRSAARL--L 488 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L ++ + G D L + E + + L G + ++ Sbjct: 489 REMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAHGL-VGRSFNLGSPKQ 547 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L+ LF E L +T + L Q+ Sbjct: 548 LQQILFDELALPKTKKIKTGYTTDADALAWLATQSDHPL--------------------- 586 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + L +R + P + R H +Q+I ++DP+ Sbjct: 587 -----IPVLLHHRDVARLKTVVDSLIPM--IDDAGRIHTTFNQMIAATGRLSSTDPNLQN 639 Query: 359 II-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + G L+ AD + IE R++A ++G+ ++AF +GEDL+ Sbjct: 640 IPIRTPQGRQIRRAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHTFV 699 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A++F++ ++V + R K M L Y A +A G+ + Sbjct: 700 AAQAFDLPVSEVDPELRRRIKAMSYGLAYGLSAF---GLAGQLGIAPDEA---------- 746 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 ++ +R + + L +Q Sbjct: 747 ----------------------------------REHMDAYFARFGGVRDFLRGVVDQAR 772 Query: 533 ENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +G I +RR +P + T+ R+ Sbjct: 773 RDGYTETIMGRRRYLPDL--------------------------------TSDNTQRRQM 800 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNAS 645 L I Q + DI+ M+ +A ++L VHDE+V E + Sbjct: 801 AERMALNAPI-QGSAADIIKIAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVEVE 859 Query: 646 MLYH 649 L Sbjct: 860 ALVR 863 >gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] Length = 875 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 107/674 (15%), Positives = 202/674 (29%), Gaps = 171/674 (25%) Query: 21 ICKYAEDVCVILFA--------FGFDDHPVELWDCVH-----DPVMPQVLKEALENTDVT 67 + Y E ++LF+ F D V D +V KE E+ ++ Sbjct: 326 LYLYFELEDIVLFSKSRIKILYVSFKDE-VYRIDFETLLKNTKEEFIEVCKEIFESKEIK 384 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKME 124 + ++S RTVL+ L + + + LA P + +L L Sbjct: 385 KITYDSKNPRTVLRK---LGMEFNGINFDINLAAYLIDPVRKEYEISSLASEYLFKNINR 441 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184 E ++L K + + E D + ++K EQ Sbjct: 442 EDEDL-----KIKEVNIM---------PKLYKVLEEKIKDQDIEELLYK-------IEQP 480 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + G+ VD + L + E E+ S++ + ++L LF Sbjct: 481 LTETLSAMETEGFKVDKNILLQLEKKFKGEIESTQSEIYSMS-EEEFNINSPKQLGKILF 539 Query: 245 LETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 + L + T+T VL + P ++ R + + L A++ D Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDED 598 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII- 360 G++ +Q +T +++P+ I Sbjct: 599 GKIHS-------------------------------NFNQTVTATGRLSSTEPNLQNIPI 627 Query: 361 ----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 +R I + E ++ AD + IE RVLA ++ ++ + AF +D++ T + Sbjct: 628 KYEMGREIRKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKTASE 687 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F V +VT R+ K + + Y G + + + + E + Sbjct: 688 VFKVPIDEVTPLMRSNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERY 742 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + + L E+ I+ G Sbjct: 743 PNVKIY------------------------------------------LENIVEEAIQKG 760 Query: 536 -KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 I +RR + V R +N+ Sbjct: 761 YVTTILNRRRYIKEVKSSNK---------------IVKAAGERLAMNSP----------- 794 Query: 595 GKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASML 647 +Q + DI+ M+N + I+L VHDE++ D E +++ Sbjct: 795 -------IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALV 847 Query: 648 YHLMTSNPSWAKGL 661 M GL Sbjct: 848 KREMEQVLELKVGL 861 >gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 887 Score = 231 bits (590), Expect = 3e-58, Method: Composition-based stats. Identities = 103/633 (16%), Positives = 198/633 (31%), Gaps = 143/633 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +KE LEN + N+ L L ++ L +N + L + Sbjct: 365 EIKELLENPKIKKDTFNAKAHYVALHRQGIELHGNGFDFLLVSYLLNTNDNSNDLGQLAH 424 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-----VTR 169 + +E E+ + R+ P+ R + + +T Sbjct: 425 EHNYYQVQSDE--EVYGK---------GKSRHLPDDRSVFFTHLVQKGMAIEQLKHPLTD 473 Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 ++ + + E+ L ++ + G VD + + +L+Q + + Sbjct: 474 QLHENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMGSKLKERLAELEQAIYNEA- 532 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G + ++L T LF + L + T+T + +KL +A Sbjct: 533 GEEFNINSTKQLGTILFEKMKLPVIKKTKTGYSTSVEVLEKLQGRAPI------------ 580 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L + S+ + H Q +T Sbjct: 581 ----------------IDNILVYRQISKIQSTYITGLLKVIHSSDQKIHTRYLQTLTQTG 624 Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R S G K+ +D + +E RVLA + G++ + Sbjct: 625 RLSSVDPNLQNIPVRLEEGRKIRRAFKPSQPGWKIFSSDYSQVELRVLAHVTGDRNLQQD 684 Query: 402 FETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F G+D++ +T R F++ +VT + R K + + Y S GL+ N Sbjct: 685 FIDGKDIHESTARRIFHLLPGEKVTPNMRRQAKAVNFGIVYG---------ISDYGLSQN 735 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + + + + EN + A + ++ T Sbjct: 736 IHVTRKQAHEFIQSYFKEFPGVQEYIENIVKLAKKQGYVET------------------- 776 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + +RR +P + K RS R+ + Sbjct: 777 ------------------LTHRRRYLPEINSKNFSR---------RSFA------ERTAM 803 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVC 634 NT +Q + DI+ M+N KAG ++L +HDE++ Sbjct: 804 NTP------------------IQGSAADIIKIAMINMNEQLQKAGLKAKMLLQIHDELIF 845 Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 E P+ + L +M S +PLK E Sbjct: 846 EAPEEEIDQLRELVPKVMDSAVK--LDVPLKVE 876 >gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] Length = 875 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 104/669 (15%), Positives = 204/669 (30%), Gaps = 161/669 (24%) Query: 21 ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68 + Y E ++LF+ + V D +V KE E+ ++ Sbjct: 326 LYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLKNTKEQFIEVCKEIFESKEIKK 385 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + +++ RT+L+ L I + + LA P + +L S + Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLA-SEYLFKNI-- 439 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 E L + + +++ E +++ + L + EQ L Sbjct: 440 -------NREDEILKIKEVNMMPKLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ VD + L + E E+ S++ + ++L LF + Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + P ++ R + + L A++ DG++ Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 +Q +T +++P+ I Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631 Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT R K + + Y G + + + + E + + Sbjct: 692 PIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDA--YLERYPN-- 744 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + EN E A + + + TI N Sbjct: 745 --VKLYLENIVEEA------------------------------VEKGYVNTILN----- 767 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 +RR + V R +N+ Sbjct: 768 --RRRYIKEVKSSNK---------------IVKAAGERLAMNSP---------------- 794 Query: 600 NIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 +Q + DI+ M+N + I+L VHDE++ D E +++ M Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKKEME 852 Query: 653 SNPSWAKGL 661 GL Sbjct: 853 QVLELKVGL 861 >gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis] Length = 924 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 107/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 407 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 466 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 467 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 526 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 527 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 585 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 586 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 621 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 622 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 676 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 677 LEQGRLIRKAFTPSQEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 736 Query: 417 FNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + VT + R K + + Y +++ G+ + T + Sbjct: 737 FGIDKAEDVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 787 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 788 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 812 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 813 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 843 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q + DIL M+N A ++L VHDEIV E P+ + L Sbjct: 844 ------IQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTAIKKLVK 897 Query: 650 -LMTSNPSWAKGLPLKAE 666 M + A +PL+A+ Sbjct: 898 DTMEAAVDLA--VPLRAD 913 >gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 878 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 104/668 (15%), Positives = 207/668 (30%), Gaps = 153/668 (22%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + ++ + ++ L +A + F+R+ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSK 378 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 VL + +D+P LA+ + +L + + + E + + KG Sbjct: 379 VLLSHLGVDLPAP--AFDSRLAKYLLSTVDDNELSTIARLYTDYVLDSDEAV--YGKGVK 434 Query: 139 HECLYDRNKPNHREAWRL---FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195 +H + + E D + L EQ L + + Sbjct: 435 RAVPKKAVLLSHLARKIVVLNYSEKVMLDKLTEHQQASLLF---DMEQPLANVLAKMEIA 491 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--ED 253 G V A + +L QE+ L G+ + ++L LF + L Sbjct: 492 GISVKKATLQEMEASNQAVIDELTQEIYDLA-GMEFNINSPKQLGELLFDKMQLPTSYTK 550 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T+T + ++L P + V L++ Sbjct: 551 KTKTGYSTAVDVLERLAPISPIVSK----------------------------ILEYRQI 582 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 ++ L + + H Q +T + DP+ I +R Sbjct: 583 AKLQSTYIVGLQDFIL-QDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 641 Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 + E + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + VT Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A+ G+ ++T Sbjct: 702 NDRRNAKAVNFGIVYGISDY---GLANNLGIPRKVAKQYIETYF---------------- 742 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRD 545 R + N + + + G + +RR+ Sbjct: 743 ----------------------------ERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 +P + + R+ R R+ +N+ +Q Sbjct: 775 LPDI--------------NSRNFNIRQF-AERTAINSP------------------IQGS 801 Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658 + DIL M+N KA D ++L VHDEI+ + P + E +++ M S Sbjct: 802 AADILKIAMINLDKALVDGQFKTKMLLQVHDEIILQVPKDELEAVKTLVKETMESAID-- 859 Query: 659 KGLPLKAE 666 +PL A+ Sbjct: 860 LSVPLIAD 867 >gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall] gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall] Length = 875 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 103/670 (15%), Positives = 205/670 (30%), Gaps = 163/670 (24%) Query: 21 ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68 + Y E ++LF+ + V D +V KE E+ ++ Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLIKNTKEQFIEVCKEIFESKEIKK 385 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + +++ RT+L+ L I + + LA P + E L+S+ + + Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEY--EISSLASEYLFKNIN 440 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 F K + + +++ E +++ + L + EQ L Sbjct: 441 REDEFLKIKEVNIM--------PNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ VD + L + E E+ S++ + ++L LF + Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + P ++ R + + L A++ DG++ Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 +Q +T +++P+ I Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631 Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT R K + + Y G + + + + Sbjct: 692 PIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDAYL--------- 739 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAI 538 +++ V L E+ IE G + Sbjct: 740 --------------------------------ERYPNVKL---YLENIVEEAIEKGYVST 764 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 I +RR + V R +N+ Sbjct: 765 ILNRRRYIKEVKSSNK---------------IVKAAGERLAMNSP--------------- 794 Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651 +Q + DI+ M+N + I+L VHDE++ + E +++ M Sbjct: 795 ---IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEM 851 Query: 652 TSNPSWAKGL 661 GL Sbjct: 852 EQVLELKVGL 861 >gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] Length = 880 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 96/572 (16%), Positives = 185/572 (32%), Gaps = 63/572 (11%) Query: 22 CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81 Y E+ L F + + V +V KE EN + +S R V+ Sbjct: 329 DNYHEEP---LLGFSIVNETGSYFIPKDIAVESEVFKEWAENDEQKKWLFDSK--RAVVA 383 Query: 82 -ACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 +++ +LA P + V K + E + + KG Sbjct: 384 LRWQGIEL--KGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESV--YGKGAKR 439 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 + H L + + + E +LE E L + + G V Sbjct: 440 AVPSEDVLSEHLVRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKV 499 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 DV + + + + + ++++ + G + ++L LF + GL + T+T Sbjct: 500 DVDRLKRMGEELGAKLKEYEEKIHEIA-GEPFNINSPKQLGVILFEKIGLPVVKKTKTGY 558 Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 VL + R G+L+ T G + Sbjct: 559 STSADVLEKLADKHDIVDYILQYRQ-------------------IGKLQSTYI-EGLLKV 598 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 R P + H +Q +T ++DP+ I +R + S Sbjct: 599 TR-----------PDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPS 647 Query: 372 E-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 E + AD + IE RVLA ++ +Q ++AF D++ T F+VA +VT R Sbjct: 648 EKDWLIFAADYSQIELRVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRR 707 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y + G+ + ++ ++ + E+ Sbjct: 708 QAKAVNFGIVYGISDYGLSQ---NLGITRKEAGAFID------QYLESFQGVKAYMEDSV 758 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + A + ++ T R ++ + SR + + + T G A K+ + + Sbjct: 759 QDAKQKGYVTTLMHR-RRYIPELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAA 817 Query: 551 MKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLN 581 K+K L+L L++ L Sbjct: 818 KLKEKQLKARLLLQVHDELIFEAPQEEIEILE 849 >gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 900 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 82/437 (18%), Positives = 131/437 (29%), Gaps = 71/437 (16%) Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGEA 115 L + ++ V H+ F +L I + +LA P + Sbjct: 384 LLADPELPKVGHDVKFCEVIL---LRHRIGLVGVSFDTMLASYLLDPEGKNQLHELAERE 440 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L Q ++E R DV + RL Sbjct: 441 LGAKMQTLDEVA---------PKRRGQAQRALDEIELGEASSYGAAFADV--ALSLTDRL 489 Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P L E L + + G VD L + E L+Q+ + Sbjct: 490 RPRLRAEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREI 549 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L+ LF E L + T+T T VL + + P V +R Sbjct: 550 -VGHDINLASPKQLEAVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHR-- 606 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ P P R H Q Sbjct: 607 -----------------------------AIAKLKGTYVDALPRLVHPGTGRIHTRWGQA 637 Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + + DP+ I + +R +A G +V AD + IE RVLA ++ + Sbjct: 638 VAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPV 697 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF TG+D++V T F V A VT + R K + + Y G A A + Sbjct: 698 LVDAFRTGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESAL---AKRLDI 754 Query: 458 NLNTFAHLVKTNSAPEE 474 + A + A Sbjct: 755 SRAEAARFIDAYFARYR 771 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 597 LTENIVQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652 +Q + D+L M+ + G +VLTVHDE+ E P + + + + M Sbjct: 818 AQNTPIQGTAADLLKLAMVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAME 877 Query: 653 SNPSWAKGLPLKAE 666 S +PL + Sbjct: 878 SVFP--LDVPLVVD 889 >gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] Length = 994 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 106/639 (16%), Positives = 190/639 (29%), Gaps = 150/639 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------LPSALK 110 LK LE+ V V N ++ TVL I + T+V++ +P Sbjct: 466 LKPLLEDDSVLKVGQNIKYDLTVLARH---GIAVAPIDDTMVMSFCLDAGRGEPMPFGHG 522 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A + + K++ K + Y D VT Sbjct: 523 MDELAERHLGHTTIKFKDVAGTGKKAIS----------FAEVPLPDATRYAAEDAEVTWR 572 Query: 171 IFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + L P ++E + L + T+ G VD TL+ L+ Sbjct: 573 LHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHGIKVDRERLATLSGEFATRIAALES 632 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQAIQV 276 + G + ++L LF + G +T Q VL + + + Sbjct: 633 VIHEKA-GTTFTIGSPKQLGEVLFDKLGYKGGKKGKSGQYSTDQSVLETLASQGAEVATL 691 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + S+ P R H Sbjct: 692 VLEWRQLSK------------------------------LKSTYTDALQAAINPATGRVH 721 Query: 337 EELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391 + ++DP+ I I +R +A G L+ AD + IE R+ A Sbjct: 722 TSYSLVGAQTGRLSSNDPNLQNIPVRTEIGRQIRDAFVAEPGHVLLSADYSQIELRLAAH 781 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A +AF GED++ T F +V +D R K + A+ Y Sbjct: 782 IADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAILYGIS------- 830 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 RW +GT+ + + Sbjct: 831 -------------------------------RWGLATR---------LGTSADEAQAMID 850 Query: 512 QKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + R + +H+ E + G + ++ P + K Sbjct: 851 RYFERFPGIQRYIHETLEHVRDRGYSETLFGRKTWFPRIASKTQA--------------- 895 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 G+ R+ +N + G + I +A++R + ++ A ++L VHD Sbjct: 896 ERAGSERAAINAPIQ---------GTCADIIKRAMAR--MTPALVEAGLGHVRMLLQVHD 944 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAE 666 E+V E P++D A +++ +M + A +PL E Sbjct: 945 ELVFELPESDVAAASAVIERVMATAAEPAVKLSVPLGVE 983 >gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] Length = 881 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 111/665 (16%), Positives = 211/665 (31%), Gaps = 160/665 (24%) Query: 30 VILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFER-TVLKACFNLD 87 +I FA+G L+ ++ + KE LE T + + F+R VL + + Sbjct: 338 IIGFAWGTKG---HLYASTDTGLLQTPIFKEFLEKTPLKVY----DFKRAKVLLSHLGIT 390 Query: 88 IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + LA+ + L SQ E++ + + Sbjct: 391 L--QNPAFDSRLAKYLLSTVEDNEISTIASLYSQIALPLDEVV--------YGKGAKKAI 440 Query: 148 PNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 P + + +L+ L EQ L + + G V+ Sbjct: 441 PEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVER 500 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTC 259 + + +L QE+ L G + ++L LF + L LE T+T Sbjct: 501 QTLQDMQVENEAVLERLTQEIYELA-GEEFNINSPKQLGVILFEKLELPLEYTKKTKTGY 559 Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 VL + P ++ R A + + L + + DG++ Sbjct: 560 STAVDVLERLAPIAPIVSKILEYRQIAKIQSTY-VIGLQDWILEDGKI------------ 606 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 H Q +T + DP+ I +R + Sbjct: 607 -------------------HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPE 647 Query: 372 E-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429 E L+ +D + IE RVLA ++G++ + AF+ G D++ +T R FN+ P VT + R Sbjct: 648 EENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDR 707 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +++ G++ ++T Sbjct: 708 RNAKAVNFGVVYGISDF---GLSNNLGISRKEAKAYIETYF------------------- 745 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPL 548 R + + + + + + G + ++RR++P Sbjct: 746 -------------------------ERYPGIKDYMERVVREARDKGYVETLFKRRREIPD 780 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608 + + R+ R R+ +N+ +Q + D Sbjct: 781 I--------------NSRNFNVRGF-AERTAINSP------------------IQGSAAD 807 Query: 609 ILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661 IL M++ +A ++L VHDEIV + P + L M S + Sbjct: 808 ILKIAMIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESAIELV--V 865 Query: 662 PLKAE 666 PL+A+ Sbjct: 866 PLEAD 870 >gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B] gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B] Length = 910 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 91/519 (17%), Positives = 158/519 (30%), Gaps = 133/519 (25%) Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 D V RL L E L + + G VDV L+ + +Q Sbjct: 495 DAEVAARGGARL--LRDVELPLIDVLAAMERAGIAVDVDTLVDLSAELAAHVKATEQAAY 552 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G + ++L+ LF E L +T + + L Q + Sbjct: 553 QV-VGREFNLGSPKQLQQILFEELRLPKTKRIKTGYTTDAEALQNLLAQTGHPLLEHLLR 611 Query: 284 SRSAVLKLNTLVEA----MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R V +L V++ ++++GR+ T Sbjct: 612 HRD-VSRLKATVDSLIPMVDAEGRIHTT-------------------------------F 639 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMA 393 +Q++ + DP+ I +R + +G + L+ AD + IE R++A ++ Sbjct: 640 NQMVAATGRLSSQDPNLQNIPIRTAEGRRIRQAFVVGKGYEALLTADYSQIEMRIMAHLS 699 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 +Q ++AF +G D + T A F V P QV + R K M L Y A + Sbjct: 700 QDQALIEAFRSGFDFHAATAASVFGVRPEQVDAEMRRRVKAMNYGLAYGLSAYGLSQ--- 756 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G+ + + + Sbjct: 757 QLGITPDEA--------------------------------------------RVLMEEY 772 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 R + + L E+ +G RR LP Sbjct: 773 FRRFGGVRDYLRTVVERARRDGYTETLLGRRRY---------------LP---------- 807 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627 L + RQ RE L I Q + DI+ M+ +A ++L Sbjct: 808 -----DLTSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLGVDRALRAAGAKSRLLLQ 860 Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 VHDE+V E + + + M ++ +PL+ Sbjct: 861 VHDELVLEVAPGERADVEEIVRREMGH--AYELSVPLEV 897 >gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 849 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 75/486 (15%), Positives = 152/486 (31%), Gaps = 121/486 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + ++ G V + + + V +L++++ G + + Sbjct: 449 YTQIELPLIFTLDSMEKWGISVKSEELKSYGEKLSVRIGELEKQIWQQA-GEEFNINSPK 507 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 ++ LF + GL T+T +KL P+ V + Sbjct: 508 QMGVILFEKLGLKGGKKTKTGYSTAADILEKLAPEYPIVKD------------------- 548 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 L++ ++ + R H +Q IT +++P+ Sbjct: 549 ---------ILEYRQLAKLKSTYADGL-VGEIAEDGRIHSTFNQTITATGRISSTEPNLQ 598 Query: 358 QI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I + +R + EG + AD + IE RVLA M+G++ ++A++ +D++ T Sbjct: 599 NIPVRMELGRLIRKVFVPEEGYVFLDADYSQIELRVLAHMSGDEKLIQAYKEAQDIHRHT 658 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + F+V +VT QR K + + Y + + + A ++ Sbjct: 659 ASEVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAEYIE--RYF 713 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 E + + F + E E ++ Sbjct: 714 ETYPKIKGFL----DGLVEEGKEKGYV--------------------------------- 736 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + +RR +P L SG + R +N+ Sbjct: 737 ----TTMFGRRRPIP-------------ELKSGNFMQRSF--GERVAMNSP--------- 768 Query: 593 YGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE-TPDTDEFNAS 645 +Q + DI+ M +VL VHDE++ E + ++ Sbjct: 769 ---------IQGTAADIIKIAMNRVYRRLKDENLKSRLVLQVHDELLIETCKEEIPQVSA 819 Query: 646 MLYHLM 651 +L M Sbjct: 820 ILEEEM 825 >gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 908 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 110/674 (16%), Positives = 201/674 (29%), Gaps = 153/674 (22%) Query: 19 CGICK-YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSY 74 G K Y D + D D + P+ L L + H + Sbjct: 348 VGTHKAYDADATALAIVAADGDG--RYID--TSTLTPEDEAALASWLADPGPPKALHEAK 403 Query: 75 FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134 + + LA P + L + + Sbjct: 404 L---AMHDLAGRGWTLRGVTSDTALAAYLVRPGQ-----RSFTLDDLAVRYLHRELRAET 455 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYL 188 + L D + +A + + + + + L LS E + Sbjct: 456 PEQQQLSLLDDSDGVDEQAVQTVILRACAVLDLADALDQELARIDSLSLLSRMELPVQRT 515 Query: 189 DQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + G VD+ + L ++ D R + + G + ++L+ LF E Sbjct: 516 LAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYSVI--GKQINLGSPKQLQAVLFDEL 573 Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRL 304 + T+T + + L + F + A R A + ++ L+ ++ SDGR+ Sbjct: 574 EMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAHRDATRLKVTVDGLLNSVASDGRI 633 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 T +Q I +++P+ I Sbjct: 634 HTT-------------------------------FNQTIAATGRLSSTEPNLQNIPIRTE 662 Query: 361 -SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R + EG +L+ AD + IE R++A ++ + ++AF TGEDL+ +R+F+ Sbjct: 663 AGRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFS 722 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V +VT + R K M L Y A +A ++ Sbjct: 723 VPIDEVTPELRRRVKAMSYGLAYGLSAY---GLAQQLKISTEEA---------------- 763 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 K Q R + + L +Q ++G Sbjct: 764 ----------------------------KVQMEQYFDRFGGVRDYLRDVVDQARKDGYTS 795 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 RR LP S + + RE L Sbjct: 796 TVLGRRRY---------------LPELDS----------------SNRQVREAAERAALN 824 Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651 I Q + DI+ M+N +A I+L VHDE++ E + ++ L M Sbjct: 825 API-QGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLVREHM 883 Query: 652 TSNPSWAKGLPLKA 665 + ++ +PL+ Sbjct: 884 GN--AYPLDVPLEV 895 >gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 899 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 112/632 (17%), Positives = 194/632 (30%), Gaps = 151/632 (23%) Query: 60 ALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L + V H + VL + + + + L PS + L Sbjct: 383 LLADPAVKKGGH----DLKVLSLLLGGMKLTLQGAHDDVELLSYLLNPSRRE-----HAL 433 Query: 119 SSQKMEE-GKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRL 175 E G EL A T E R H E +G + +++ L Sbjct: 434 PDLSRERLGLELPAL---PATAEGKKGRPLVEHSAEEVAAAYGARADAARRLAPRLWEEL 490 Query: 176 EPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + E L + + +G +D A+ TL+ VD E + + +L G Sbjct: 491 EAIGLAALARDMELPLLPILARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLA-GQ 549 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +L L+ + L + +T T Q VL + P + R S+ Sbjct: 550 EFNVGSNPQLAQVLYEKLQLPILKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKL 608 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L+TL + D R H Q T Sbjct: 609 KSTYLDTLPGLVAKD-------------------------------GRIHTTYHQAATAT 637 Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I + +R +A G +LV AD + +E R+LA +A + L A Sbjct: 638 GRLSSSDPNLQNIPVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDA 697 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ ED++ T A F V P +V +DQR + K + + Y +++ Sbjct: 698 FQHDEDIHSRTAAEIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLST---RLSISVEE 754 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 +++ R + + Sbjct: 755 ARDIIERYFT--------------------------------------------RYAGIR 770 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 L E+ + G RR L+ L S V + + Sbjct: 771 RYLEDTVERARKTGYVETMFGRRR------------LMADLNSKNRAVAQAAERAAINM- 817 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635 +Q + D++ + M+ +A ++L VHDE++ E Sbjct: 818 -------------------PIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFE 858 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 P+ + L M+S + +PLK + Sbjct: 859 APEAEVDRVKALARQCMSSVAT--LKVPLKVD 888 >gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7] gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7] Length = 870 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 98/655 (14%), Positives = 200/655 (30%), Gaps = 128/655 (19%) Query: 31 ILFAFG-FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 ++ F ++D D + K + + + ++ + A + Sbjct: 329 MIVGFAVYNDSEAYFI-GTEDALNCTNFKNFISDKKIEKYGYDIK---KSINAAKWHGLE 384 Query: 90 IHRWICTLVLARSNGLPSALKAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRNKP 148 I ++ L LA PS + + + +E+ + K + E Sbjct: 385 IENYVFDLQLASYILNPSLKDEIRSVCEYYEYYDVFYDEEVYGKGAKKKVPETSRV---A 441 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208 H K + E E + + + +G VD + L Sbjct: 442 EHLIKQAKAIYILKDQAIEKLNNENQFELYKDVEMPVAKILARMEFQGAKVDSVVLKQLE 501 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSS 265 + E L++E+ +L + ++L LF + GL T+T +L+ Sbjct: 502 EQFGREINILEKEIHTLA-NREFNIASPKQLGEVLFEDLGLPNGKKTKTGYSTSVDILNK 560 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 K + P +V + S+ Sbjct: 561 LKDIHPIIDKVLK-------------------------------YRTLSKLYSTYIIGLQ 589 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 Q + H +Q +T ++DP+ I +R + LV D Sbjct: 590 DQVF-IDGKIHTIYNQALTQTGRLSSTDPNLQNIPVKTPEGKLIRKAFVPEYDY-LVSFD 647 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA +AG + +KAF +D++ T + F V QV R K + + Sbjct: 648 YSQIELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFGII 707 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y +A G+++ +K + + + +++ + ++ ++ Sbjct: 708 YGMSDF---GLAEQVGVSVGEAREFIK------RYFENYPEIKLYMDSNIDFCKKNGYVT 758 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 T R K+ R+ + + YM+++ Sbjct: 759 TMLNR-KRFIREINEKN--------------------------------YMRQEFG---- 781 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R +N+ + G + I A+ I + ++ + Sbjct: 782 ---------------KRLAMNSPIQ---------GSAADIIKVAM---IKVDELLKKHQL 814 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG-YESKRY 673 ++L VHDE++ + + + MT+ + LKAEG Y Y Sbjct: 815 KSKMILQVHDELIFDVYQEELQEVMEIVAKGMTTAIK--MDVELKAEGSYAVNWY 867 >gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58] gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58] Length = 928 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 108/641 (16%), Positives = 198/641 (30%), Gaps = 157/641 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V V N ++ TVL+ +++ + T+V++ +L G Sbjct: 403 LKPLLEDDAVLKVGQNLKYDMTVLRRH-GIEVVPYD--DTIVMSFDLEAGKSLSGHGM-- 457 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKRL 175 E ++ + C +N+ + E EY D VT ++KR Sbjct: 458 ------DEAARQHLGHECISFKDVVGTGKNQISFAEVPLPRATEYAAEDADVTLRLWKRF 511 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + + E + L + + +G VD L+ L+ E+ + Sbjct: 512 KARIANEGTNRVYELVDRPLVGVIAKMEHQGIKVDREALSRLSAEFTAGIAALETEIHEI 571 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKL-TPQAIQVFNNR 280 G + ++L LF + G +T +L K P A +V R Sbjct: 572 A-GQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKAQGAPIAAKVLEWR 630 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ Q R H Sbjct: 631 QL-------------------------------SKLKSTYTDALQAQINKDSGRVHTSYS 659 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 ++DP+ I +R +A G ++ AD + IE R+ A MA Sbjct: 660 LTGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGHVILAADYSQIELRLAAHMADV 719 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF GED++ T + F +V ++ R K + A+ Y +A Sbjct: 720 PALKEAFAAGEDIHAATAEQLFG----EVNRETRGRAKTINFAILYGIS---RWGLAGRL 772 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ + +A++ E P +I Sbjct: 773 EISAD----------------EAQDMISRYYERFPGISI--------------------- 795 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 +++ E+ E G R+ + + K ++ G Sbjct: 796 -------YINETIEKARERGYTETLFGRKT----WFPRIKASIQHERQ----------GA 834 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTV 628 R+ +N +Q S DI+ M+ A G ++L V Sbjct: 835 ERAAINAP------------------IQGTSADIIKRAMVRMGPALEAAGLSGVRMLLQV 876 Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSW--AKGLPLKAE 666 HDE+V E P+ D + ++++ +M + +PL E Sbjct: 877 HDELVFEVPEGDVDAASAVVRRVMETAAEPIVTLSVPLGVE 917 >gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065] Length = 875 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 102/670 (15%), Positives = 201/670 (30%), Gaps = 163/670 (24%) Query: 21 ICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENTDVTI 68 + Y E ++LF+ + V D +V KE E+ ++ Sbjct: 326 LYLYFELEDIVLFSKSRVKTLYANFKDEVYKIDFEMLLNNTKEQFIEVCKEIFESKEIKK 385 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128 + +++ RT+L+ L I + + LA P + +L S + Sbjct: 386 ITYDAKNPRTILRK---LGIEFNGIEFDINLAAYLIDPVRKEYEISSLA-SEYLFKNI-- 439 Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 E L + +++ E +++ + L + EQ L Sbjct: 440 -------NREDEFLRIKEVNIMPNLYKVLEEK-----IKEQDMEELLYKV---EQPLTET 484 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G+ VD + L + E E+ S++ + ++L LF + Sbjct: 485 LSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS-EEEFNINSPKQLGKILFEKLD 543 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + P ++ R + + L A++ DG++ Sbjct: 544 LPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLT-KIYSTYIEGLKAAIDEDGKIH 602 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 +Q +T +++P+ I Sbjct: 603 S-------------------------------NFNQTVTATGRLSSTEPNLQNIPIKYEM 631 Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R I + G ++ AD + IE RVLA ++ ++ + AF +D++ T + F V Sbjct: 632 GREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKV 691 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT R K + + Y G + + + + Sbjct: 692 PIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ---DLNITRKEAKQYIDAYL--------- 739 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAI 538 +++ V L E+ IE G + Sbjct: 740 --------------------------------ERYPNVKL---YLENIVEEAIEKGYVST 764 Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 I +RR + V R +N+ Sbjct: 765 ILNRRRYIKEVKSSNK---------------IVKAAGERLAMNSP--------------- 794 Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNASMLYHLM 651 +Q + DI+ M+N + I+L VHDE++ + E +++ M Sbjct: 795 ---IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEM 851 Query: 652 TSNPSWAKGL 661 GL Sbjct: 852 EQVLELKVGL 861 >gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429] gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429] Length = 890 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 118/594 (19%), Positives = 206/594 (34%), Gaps = 85/594 (14%) Query: 6 ID-FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57 ID +T S ID + ++ ++ + ++ H ++ + L Sbjct: 314 IDEVKTFS-IDTETTSLDPFS--AKLVGVSISTNEGEAYYIPISHVSENNLTKEIVLKFL 370 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115 KE LE IV N F+ V I ++A P A Sbjct: 371 KEILECERYNIVGQNLKFDYKV---FMVNGIEPQIPHFDTMVAAYLINPEERRYNLEELA 427 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 LK KM +EL+ + + EY DV +T ++ L Sbjct: 428 LKYLGYKMISFEELV--------DNNMPLFGNDFSFISIEKAAEYSCEDVDITFRLYSYL 479 Query: 176 EPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + +EL+Y + + G DV L++ + E KL++++ ++ Sbjct: 480 SKYIGEMKELFYNIEMPLINVLAQMELNGVYFDVDYLKELSKRYEEEMKKLEEKIFEIS- 538 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283 G + +++ LF + L + T T T VL K A + R Sbjct: 539 GEQFNINSSKQVAEILFEKLKLPIVKKTATGRNSTNAEVLEELAKDYEIARLILEYRK-- 596 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 Q L ++ V N+ +R H Q Sbjct: 597 ------------------------FQKLKSTYVDSIPSSV----NIT-TNRVHSSFHQTG 627 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 T +S P+ + +R V E +V AD + IE RVLA M+ ++ Sbjct: 628 TSTGRLSSSAPNLQNLPTRSEEGKEIRHAVKPQFENWYIVGADYSQIELRVLAHMSEDEK 687 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 L AFE D++ T ++ FNV+ VT+D R IGK++ A+ Y ++ GL Sbjct: 688 LLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIYGISPY---GLSRRIGL 744 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 N+N ++ + + ++ F + + ++ F+ T R K+ Q + Sbjct: 745 NVNETKKIID--NYFKYYQGVFEFIKKTIDFAKKNG----FVKTLFGR-KRFIPQLKLKN 797 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDKNNLILMLPSGRSLVY 570 L E + T G A K V + +K++ L+L LV+ Sbjct: 798 KNLIQEGERIAINTPVQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHDELVF 851 >gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 866 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 76/517 (14%), Positives = 157/517 (30%), Gaps = 76/517 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 Q +K LE+ + HN+ F + +L I + +L P+ Sbjct: 366 QWIKALLESAVIKKYLHNAKFIQVLL---LRHGIELRGVAGDTMLLAYVDDPAF------ 416 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 EG EL A K + N R +G + Sbjct: 417 ----------EGDELDACLKKHLQLNIAEN-NLAALVNTIRELYFQLEGQIPAELR---- 461 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L E + + + G V+ + +++ + ++ + L G + Sbjct: 462 -ELLQEVEMPMSEVLARMEFCGVKVERSTLARISEELASGIAGHEERIFELA-GSSFNIN 519 Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + GL + +T VL + + N R Sbjct: 520 SPKQLGKVLFEDLGLRVIKKGKTGYSTGAEVLEELYQEHEIIAHILNYRQL--------- 570 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 S+ P R H Q T + Sbjct: 571 ----------------------SKIKSTYADALQELIHPETGRVHTIFKQAQTATGRLSS 608 Query: 352 SDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +P+ I +R +A ++ AD + I+ R LA ++G++ ++ F++G Sbjct: 609 VEPNLQNIPIRMEEGRRIRQAFVAPGPDWLIMAADYSQIDLRSLAHISGDERLIETFKSG 668 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ T F+V V + R K + + Y +A TG++ Sbjct: 669 VDIHTRTAVEIFHVPVEWVDSELRRRAKAVNFGIIYGISDF---GLARDTGVSRKEARKY 725 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + ++ + E+ E ++ T +R ++ + ++R + Sbjct: 726 IDN------YLNSYPGVKKYMEDIVEFGRRHGYVETLLKR-RRYLPELNARNKMVQAFGR 778 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + T G + K + + + + +L Sbjct: 779 RMALNTPVQGTSADIIKLAMIKVDEEIRKRRLQARLL 815 >gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202] gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202] Length = 931 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 104/648 (16%), Positives = 189/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D H++ + Sbjct: 378 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 434 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 435 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 486 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 487 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 546 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 547 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 605 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 606 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 659 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 660 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 694 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 695 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 754 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 755 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 782 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 783 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 826 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 827 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 855 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 856 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 903 >gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] Length = 907 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 72/480 (15%), Positives = 150/480 (31%), Gaps = 126/480 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + G +D A + + V +L+ + G + ++L Sbjct: 511 EMPLVFTLADMEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEA-GEEFNINSPKQLGV 569 Query: 242 WLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + + T+T T VL P + R + + L + Sbjct: 570 ILFEKLEMPYGKKTKTGYSTAADVLDKLAPEYPIVADILEYRQLTKLKSTYA-DGLANYI 628 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H +Q IT +++P+ Sbjct: 629 KEDG-------------------------------RIHTSFNQTITVTGRLSSTEPNLQN 657 Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I + +R + ++G + AD + IE RVLA M+G++ ++A+ +D++ T Sbjct: 658 IPMRIELGRLIRKAFLPAKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITA 717 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 ++ F++ +VT QR K + + Y + + ++ A ++ Sbjct: 718 SQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISKKEAAEYIERYF--- 771 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + ++ + L + ++ Sbjct: 772 --------------------------------------ETYPKIKTFLDGLVEDAKK--N 791 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + +RR VP + S + + R G R +N Sbjct: 792 GYVTTMFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNAP---------- 826 Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M+ +++TVHDE++ ET + + + Sbjct: 827 --------IQGTAADIIKIAMIRVHDRLLEEHLKSRLIITVHDELLIETAEDEIDRVKEI 878 >gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4] gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4] Length = 914 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 111/631 (17%), Positives = 190/631 (30%), Gaps = 143/631 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L + L + + H + + A + LA P Sbjct: 392 LGDWLADAEQPKALHEAK---WAMHALRGRGWVLGGLTSDTALAAYLVRPGQ-----RTF 443 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTVTRE 170 L + + + G+ L D EA + + Sbjct: 444 NLDDLSLRYLRRELRVEETGQEQLSLLDDADQVDAEAAETEILSARAVLDLAAALDTELD 503 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + LS E L + I G VD H L E ++ + + G Sbjct: 504 NIESTALLSEMELPLLEVLAVIEASGIAVDGTHLHDLQSRFAAEVSEAAEAAYGVI-GKQ 562 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV-- 288 + ++L+ LF E + T+T + + L + F + A R A Sbjct: 563 INLGSPKQLQVVLFDELEMPKTKKTKTGYTTDAEALQNLFEKTSHPFLEHLLAHRDATRL 622 Query: 289 -LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + ++ L++ + DGR+ T +Q + Sbjct: 623 KVTVDGLLKTVAEDGRIHTT-------------------------------FNQTVAATG 651 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R + EG L+ AD + IE R++A ++G+ ++A Sbjct: 652 RLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDAGLIEA 711 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F TGEDL+ AR+F V +VT + R K M L Y A +A+ ++ Sbjct: 712 FNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAF---GLAAQLKISTEE 768 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 K +R + Sbjct: 769 A--------------------------------------------KSQMEAYFARFGGVR 784 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + LH+ EQ ++G RR LP L Sbjct: 785 DYLHEVVEQARKDGYTSTLYGRRRY---------------LP---------------DLT 814 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCE 635 + RQ RE L I Q + DI+ M+N ++ ++L VHDE+V E Sbjct: 815 SDNRQ-RREVAERAALNAPI-QGTAADIIKVAMINVQRSLREAGLKSRMLLQVHDELVLE 872 Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 D++ L M+S +PL Sbjct: 873 VVDSEREQVEQLVRDKMSSAIE--LSVPLDV 901 >gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4] Length = 877 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 99/599 (16%), Positives = 183/599 (30%), Gaps = 154/599 (25%) Query: 95 CTLVLARSNGLPSAL------------KAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 C A L +L A A L+ K G + IAR G T Sbjct: 367 CRTGHAWVLDLKHSLPFAKLSYGDTVYDAGVAAYLLNPLKDTYGYDDIARDVLGMTVPSK 426 Query: 143 YDRNKPNH-----REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWY 187 D K + F K L + E L Y Sbjct: 427 TDLIKKMSYKDACAKEQDNFTRMAGLMAYTAFAAGKPLSERLAAEGMEDLYRNIELPLIY 486 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + D G V + + L++E+ +T G + ++L LF + Sbjct: 487 TLFHMEDEGIAVRREELTAYGGKLKKQIAVLEKEIWEMT-GQEFNINSPKQLGEILFEKM 545 Query: 248 GLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 + T+T T VL P ++ + R ++ + L + DGR+ Sbjct: 546 QIKGGKKTKTGYSTAADVLEKLAPDYPVIQKILDYRQYTKLNSTYA-DGLGTYIKEDGRI 604 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI----- 359 H +Q IT +++P+ I Sbjct: 605 -------------------------------HSRFNQTITATGRISSTEPNLQNIPIRME 633 Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 + +R + G + AD + IE RVLA M+G++ ++A++T +D++ T ++ F++ Sbjct: 634 LGREIRKVFVPRNGFLFLDADYSQIELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHI 693 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 +VT QR K + + Y A ++ ++ ++ E + + Sbjct: 694 PLNEVTPLQRRNAKAVNFGIVYGISAF---GLSEDLSISRKEAMEYIE--RYFETYPQVK 748 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 +F ++ HA E ++ + Sbjct: 749 SFL----DSLVAHAKEQGYV-------------------------------------TTM 767 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 +RR VP + K N + R +N+ Sbjct: 768 FGRRRPVPEL---KSSNFMQRSF------------GERVAMNSP---------------- 796 Query: 600 NIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLM 651 +Q + DI+ M+ ++L VHDE++ ET + ++ +L M Sbjct: 797 --IQGTAADIIKIAMIRVDERLRRENLRSRLILQVHDELLIETAEDEKETVMKILSEEM 853 >gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367] gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367] Length = 886 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 106/635 (16%), Positives = 199/635 (31%), Gaps = 151/635 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LEN D+ ++ L+ L + + C L+L L + Sbjct: 367 LKGLLENADIAKQVFDAKRTFVALQR---LAVTLTGVDCDLLLGSYL-----LNTYDNSN 418 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-KRL 175 L ME G + K + +F + ++ + Sbjct: 419 DLGRLAMEHG-----YHQVATDEDVYGKGAKAAIPDDDDVFFSHLARKARAIEQLRPQIF 473 Query: 176 EPLSSKEQELWYLD---------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + L+ EQ Y D + G V+ + + + +++Q + + Sbjct: 474 KDLADNEQTDLYRDIELPMAFVLARMEVAGITVEASELEAMGSKFTEQLAEIEQTIYNEA 533 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF + GL + T+T VL P A + R A Sbjct: 534 -GEEFNIGSPKQLGHILFEKMGLPVIKKTKTGYSTAVGVLEKLAAEAPIAENILKYRKIA 592 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ ++ P + H Q + Sbjct: 593 KIQSTY-VEGLLKVIH------------------------------PDDQKVHTRYLQTL 621 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397 T + DP+ I +R + S ++ +D + IE RVLA M+ ++ Sbjct: 622 TQTGRLSSVDPNLQNIPVRNEEGRAIRKAFVPSHPDWEIFSSDYSQIELRVLAHMSHDKQ 681 Query: 398 KLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF G+D++ T R F + +VT + R K + + Y + G Sbjct: 682 MQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVNFGIVYGISDFGLSQ---NIG 738 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + T + + + E + A E ++ T Sbjct: 739 ISRKQAKAFIDT------YFEEYPGVKAYTERMVQQAHELGYVET--------------- 777 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 IA +RR +P + + R+ R Sbjct: 778 ----------------------IAHRRRYLPDI--------------NSRNFNQRSF-AE 800 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI----VLTVHDEI 632 R+ +NT +Q + DI+ M+ +A D+ +L VHDE+ Sbjct: 801 RTAMNTP------------------IQGSAADIIKIAMIRMEQALKDMQATMLLQVHDEL 842 Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + E P ++ + L +M S +PLK E Sbjct: 843 IFEAPASEIDTLAKLVPSVMDSAIE--LEIPLKVE 875 >gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 86/482 (17%), Positives = 149/482 (30%), Gaps = 121/482 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E+ L + + G VD ++ L+ + + G + +L Sbjct: 498 EVERPLVPVLVEMERAGILVDRGAMEGMSAEFGKAMQDLEARIHA-AAGHPFNVASTREL 556 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF+E L + +T +KL Q Sbjct: 557 AQVLFVELELPVVKRLKTGPSTDQDVLEKLAEQHALP----------------------- 593 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 R L+ S+ P P R H Q +SDP+ I Sbjct: 594 -----RLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSSSDPNLQNI 648 Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +S +R +A G +L+ AD + IE R+LA + + L+AF ED++ T A Sbjct: 649 PVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAA 708 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 +F VAP QVT DQR I KV+ + Y A + L + ++ Sbjct: 709 ETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQ---RLDLPPSEAQGIIDRYFT--- 762 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 R + + + A E+ Sbjct: 763 -----------------------------------------RYAGVRRYIEWAVEEARAK 781 Query: 535 GKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 G++ + + R +P + + P+ R+ R+ +NT Sbjct: 782 GESRTLFGRARAMPEIAARN---------PALRNAA------ERTAINTP---------- 816 Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML 647 +Q + D++ M+ + ++L VHDE+V E P+ + L Sbjct: 817 --------IQGTAADVVKIAMIRVHAALAQERREARLLLQVHDELVLEVPERELEPVEAL 868 Query: 648 YH 649 Sbjct: 869 VR 870 >gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1] gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1] Length = 888 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 94/505 (18%), Positives = 168/505 (33%), Gaps = 130/505 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 ++ E L + + G +D V L+ ++ +L G + R + Sbjct: 487 VAELEMPLVPVLVAMERAGIGIDKTAFAAFADEVAGRLAILETDIVALA-GKPFNPRSSQ 545 Query: 238 KLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 +L L+ + GL T +T Q L P ++ R + + L Sbjct: 546 QLGEILYTDLGLKAHGKTPGGAASTSQDALERLAGAHPLVDRILEFR-KLEKLRSTYLAP 604 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + + D R+ H L+ + T +S+ Sbjct: 605 MPALADRDSRI-------------------------------HTTLNNMATATGRLSSSN 633 Query: 354 PDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 P+ I +R+C A G +LV AD + IE RVLA ++GE L AF G D+ Sbjct: 634 PNLQNIPIRGEFGRRMRACFTAGPGNRLVAADYSQIELRVLAHLSGESALLDAFAHGADI 693 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T A F+ + D+R K + L Y G QK++ G+ L+ + Sbjct: 694 HARTAAILFDKPEEAIAPDERRQAKTINFGLLYGMGP---QKLSRDLGIKLDAAKAFI-- 748 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + ++ +S + + +A Sbjct: 749 ---------------------------------------ARYFERLPGLSAFYEGIVEAA 769 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 ++ + + +GR + D+G+ S + Q Sbjct: 770 KR--------------------------DGFVTTLAGRRRLLPDIGSANS---QLSSQAR 800 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEF 642 R+ +VQ + DI+ M+ A +VL +HDE++ ETP+ Sbjct: 801 RQ------AINTVVQGGAADIIKMAMLAAAGDAALAGLGAVLVLQIHDELLLETPEAAAK 854 Query: 643 NA-SMLYHLMTSNPSWAKGLPLKAE 666 A + L LMT S A +PL+ + Sbjct: 855 EAGARLAGLMTGVISLA--VPLEVD 877 >gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] Length = 879 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 105/621 (16%), Positives = 202/621 (32%), Gaps = 156/621 (25%) Query: 75 FERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 F+R+ VL + +D+P + LA + +L + E E++ Sbjct: 375 FKRSKVLLSHLGIDLP--QANYDARLANYLLSNIEDNELATIARLHTNLNMEADEVV--- 429 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY------ 187 + R P + + V I +L +KE++L++ Sbjct: 430 -----YGKGVKRAFPEDEALFDHLARKIQVLVDSKAVILDKLA--VNKEEDLYFDIELPL 482 Query: 188 --LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + + G V+ + + L +E+ + G + ++L + LF Sbjct: 483 ANVLAKMEIAGITVNKTALQEMAEQNKAVIESLTEEIYEMA-GEEFNINSPKQLGSILFE 541 Query: 246 ETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 + L LE T+T VL + P ++ + R S+ + L + + S Sbjct: 542 KMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQ-ISKLQSTYVIGLQDYIMS 600 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DG++ H Q +T +SDP+ I Sbjct: 601 DGKI-------------------------------HTRYIQDLTQTGRLSSSDPNLQNIP 629 Query: 361 -----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R + S E L+ +D + IE RVLA ++G++ + AF+ D++ +T Sbjct: 630 VRLEQGRLIRKAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAM 689 Query: 415 RSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 R F + + VT + R K + + Y +++ G+ ++T Sbjct: 690 RVFGIEKEEDVTPNDRRNAKAVNFGIVYGISDF---GLSNNLGITRKKAKDYIETY---- 742 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 R + + + Sbjct: 743 ----------------------------------------FERYPGIKEYMETVVRDARD 762 Query: 534 NG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 G + +RR++P + + + RS R+ +N+ Sbjct: 763 TGYVETLFNRRRELPDINSRNF---------NIRSFA------ERTAINSP--------- 798 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTD-EFNAS 645 +Q + DIL M+N KA ++L VHDEIV E P+ + E + Sbjct: 799 ---------IQGSAADILKIAMINLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEAIKA 849 Query: 646 MLYHLMTSNPSWAKGLPLKAE 666 ++ M A +PL A+ Sbjct: 850 LVKKTMEGAVDLA--VPLLAD 868 >gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes] gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] Length = 867 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 101/676 (14%), Positives = 215/676 (31%), Gaps = 165/676 (24%) Query: 21 ICKYAEDVCVILFAFGFDDHP--VELWD-----CVHDPVMP---QVLKEALENTDVTIVA 70 + + D + +F D VE+ D +++ + LK+ L N + Sbjct: 316 LYPFIYDGKIKAVSFACGDGSFFVEIDDYDNFKLLNNDKLTLIGHDLKDFLVNISYCGIE 375 Query: 71 HNSY-FERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGK 127 N + ++ N + + VL + L + VG+ S + K Sbjct: 376 LNCKILDTAIMTYLLN--PSESNYDISRVLKKYLKEDLQNIDDIVGKGRNKKSYDDIDKK 433 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187 L+ C + N ++ F E+ L+ + E L Sbjct: 434 LLVDYMCSAAS-------NLSKLKDKLMSF--------IKEMEMEDLLKNV---EIPLIE 475 Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + +++ G+ +D + ++++ +D + K+ +++ G + ++L +LF + Sbjct: 476 VLKSMEVYGFTLDKDVLRSISKEIDEKTDKIVKDIYD-AAGYEFNINSTKQLSEFLFDKL 534 Query: 248 GLHLEDLTETTCQRVLSSNKKLTP---QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L T+T + +L P ++ R + DG + Sbjct: 535 NLPAIKKTKTGYSTDMEVLAELIPYNDIVGEIIEYRQLMKLKSTY----------IDGFI 584 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 + +R H Q + +++P+ I Sbjct: 585 PIMDE----------------------NNRVHSTFKQTVAATGRISSTEPNLQNIPVREE 622 Query: 361 -SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +R ++S E ++ AD + IE RVLA ++ ++ +++F ED+++ T + F Sbjct: 623 FGRRIRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFK 682 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V+ +VT + R K + + Y ++ ++ + Sbjct: 683 VSKEEVTSEMRRRAKAVNFGIVYGISDY---GLSKDLKISRKEAKEYID----------- 728 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KA 537 R + N + + ENG Sbjct: 729 ---------------------------------NYFDRYKGVKNYIDSIVKFAKENGYVT 755 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 I +RR +P + + ++ R G R +NT Sbjct: 756 TILNRRRYIPEI--------------NSKNFNQRSFGE-RMAMNTP-------------- 786 Query: 598 TENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHL 650 +Q + DI+ M+ ++L VHDE++ +T PD E +L + Sbjct: 787 ----IQGSAADIIKMSMVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKELLKSI 842 Query: 651 MTSNPSWAKGLPLKAE 666 M + +PL + Sbjct: 843 MENIIK--LKVPLVVD 856 >gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 883 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 103/628 (16%), Positives = 202/628 (32%), Gaps = 133/628 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110 + +K LE++ V ++ L I + ++L + + Sbjct: 362 KQVKAILESSTVQKNVFDAKRTYVGLYRS---SITLQNVDFDMLLVSYLLNTTNNSNDVG 418 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 V + ++ K +E E+ + K + + + +H + D+ + Sbjct: 419 TVAKLHGFANIKTDE--EVYGKGAKKKIDPEVPE--FFDHIVHKAKAIDQLHNDMFKALD 474 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E ++ ++ + G V+ + +++Q + G Sbjct: 475 EHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEA-GEE 533 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF + L + T+T + +KL P A V Sbjct: 534 FNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIV-------------- 579 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + S+ S+ H Q +T Sbjct: 580 --------------QNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLS 625 Query: 351 TSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + DP+ I +R I S E ++ +D + IE RVLA + G++ +AF Sbjct: 626 SVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685 Query: 405 GEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ TT R F +A VT + R K + + Y +A+ TG++ Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDY---GLANNTGISRKQAH 742 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++ + + + E+ E A ++ T Sbjct: 743 QFIQ------RYFEEYPGVKKYTEDIVEFAKNHGYVET---------------------- 774 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 IA +RR +P ++ + + RS R+ +NT Sbjct: 775 ---------------IAHRRRYLPDIHSRNF---------NLRSFA------ERTAMNTP 804 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDT 639 +Q + DI+ M+N +A ++L VHDE++ E P+ Sbjct: 805 ------------------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPND 846 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + L +M S +PLK E Sbjct: 847 EMETVEKLIPKVMDSAI--RLNIPLKVE 872 >gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] Length = 885 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 104/639 (16%), Positives = 202/639 (31%), Gaps = 155/639 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 Q L LE+ + + RT++ + L I H ++LA Sbjct: 364 QPLLSLLEDQAIAKNVFDLK--RTMV-GLYRLGIKSHNMNYDMLLASYLVNNEN------ 414 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +S + E +L + + K E F + + Sbjct: 415 ----NSNDLGEICQLYNYYDLQPDIDIYGKGKKAAIPEETVFFNHLAGKVLAIEVLKPTL 470 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L+ L+ EQ+ Y + + G D + L T+L+ ++ L Sbjct: 471 LKKLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFAQRLTELEADIY-L 529 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + GL T+T VL K+ +P +V + R Sbjct: 530 EAGERFNINSPKQLGQILFEKLGLPPIKKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQI 589 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L++ + DG R H Q Sbjct: 590 AKIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYQQT 617 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395 +T + DP+ I +R + S +G D + +E RVLA ++G+ Sbjct: 618 LTATGRLSSVDPNLQNIPVRLEEGKKIRKAFVPSNSDGYIF-SCDYSQVELRVLAHVSGD 676 Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF+TG D++ T + F++ P +VT + R K + + Y ++ Sbjct: 677 ENMQEAFKTGYDIHAHTAMKIFHLDSPNEVTPNMRRHAKAVNFGIVYGISDY---GLSKN 733 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + + + + A E+ ++ T Sbjct: 734 LGISRKQAKEFIDN------YFEQYPKIKDYMDKEINFARENGYVET------------- 774 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 I +RR +P ++ K + RS Sbjct: 775 ------------------------IMHRRRYLPDIHAKNF---------NVRSFA----- 796 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 R+ +N+ +Q + DI+ M+N K +++ V Sbjct: 797 -ERTAINSP------------------IQGGAADIIKIAMINMQKKLDELHLKTKMLIQV 837 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 HDE++ + P + + +M + +PL A+ Sbjct: 838 HDELIFDVPADELETIKKVVPEVMQNAVQ--LDVPLVAD 874 >gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116] gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116] gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1] gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni 327] Length = 879 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 96/663 (14%), Positives = 210/663 (31%), Gaps = 162/663 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60 +D E+ D G+ ++ ++ F+F ++ H + L+ A Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQI--SLQSA 368 Query: 61 LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + +V + HN ++ +++ F L++P ++ T++LA + AL Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ + + +Y D +T + Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474 Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LE PL E + + + + G +D L + + E L +E+ +L Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL++ P ++ + R + Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYR-ELA 592 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D + SR + Q T Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC +A +G + D + IE R+LA + ++ L Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ T F + + R++ K + L Y G ++ ++ + Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + + Sbjct: 737 HLA--------------------------------------------KSYIEKYFENFTS 752 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +NG + SGR + Y Sbjct: 753 IKKYFETVKNKAKQNG-----------------------FITTLSGR----------KRY 779 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636 + + + Y + +I+Q + D++ M+ K + ++L +HDE++ E Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839 Query: 637 PDT 639 D Sbjct: 840 KDD 842 >gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 878 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 104/668 (15%), Positives = 206/668 (30%), Gaps = 153/668 (22%) Query: 28 VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78 ++ + F + + ++ + ++ L +A + F+R+ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSK 378 Query: 79 VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138 VL + +D+P LA+ + +L + + + E + + KG Sbjct: 379 VLLSHLGVDLPAP--AFDSRLAKYLLSTVDDNELSTIARLYTDYVLDSDEAV--YGKGVK 434 Query: 139 HECLYDRNKPNHREAWRLF---GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195 +H + E D + L EQ L + + Sbjct: 435 RAVPKKAVLLSHLARKIVVLNHSEKVMLDKLTEHQQASLLF---DMEQPLANVLAKMEIA 491 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--ED 253 G V A + +L QE+ L G+ + ++L LF + L Sbjct: 492 GISVKKATLQEMEASNQAVIDELTQEIYDLA-GMEFNINSPKQLGELLFDKMQLPTSYTK 550 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313 T+T + ++L P + V L++ Sbjct: 551 KTKTGYSTAVDVLERLAPISPIVSK----------------------------ILEYRQI 582 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 ++ L + + H Q +T + DP+ I +R Sbjct: 583 AKLQSTYIVGLQDFIL-QDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF 641 Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426 + E + L+ +D + IE RVLA ++ ++ + AF G D++ +T R F + VT Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y +A+ G+ ++T Sbjct: 702 NDRRNAKAVNFGIVYGISDY---GLANNLGIPRKVAKQYIETYF---------------- 742 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRD 545 R + N + + + G + +RR+ Sbjct: 743 ----------------------------ERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 +P + + R+ R R+ +N+ +Q Sbjct: 775 LPDI--------------NSRNFNIRQF-AERTAINSP------------------IQGS 801 Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658 + DIL M+N KA D ++L VHDEI+ + P + E +++ M S Sbjct: 802 AADILKIAMINLDKALVDGQFKTKMLLQVHDEIILQVPKNELEAVKTLVKETMESAID-- 859 Query: 659 KGLPLKAE 666 +PL A+ Sbjct: 860 LSVPLIAD 867 >gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] Length = 883 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 103/628 (16%), Positives = 202/628 (32%), Gaps = 133/628 (21%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LK 110 + +K LE++ V ++ L I + ++L + + Sbjct: 362 KQVKAVLESSTVQKNVFDAKRTYVGLYRS---SITLQNVDFDMLLVSYLLNTTNNSNDVG 418 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 V + ++ K +E E+ + K + + + +H + D+ + Sbjct: 419 TVAKLHGFANIKTDE--EVYGKGAKKKIDPEVPE--FFDHIVHKAKAIDQLHNDMFKALD 474 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E ++ ++ + G V+ + +++Q + G Sbjct: 475 EHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEA-GEE 533 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF + L + T+T + +KL P A V Sbjct: 534 FNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIV-------------- 579 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L + S+ S+ H Q +T Sbjct: 580 --------------QNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLS 625 Query: 351 TSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 + DP+ I +R I S E ++ +D + IE RVLA + G++ +AF Sbjct: 626 SVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685 Query: 405 GEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 GED++ TT R F +A VT + R K + + Y +A+ TG++ Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDY---GLANNTGISRKQAH 742 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++ + + + E+ E A ++ T Sbjct: 743 QFIQ------RYFEEYPGVKKYTEDIVEFAKNHGYVET---------------------- 774 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 IA +RR +P ++ + + RS R+ +NT Sbjct: 775 ---------------IAHRRRYLPDIHSRNF---------NLRSFA------ERTAMNTP 804 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDT 639 +Q + DI+ M+N +A ++L VHDE++ E P+ Sbjct: 805 ------------------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPND 846 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAE 666 + L +M S +PLK E Sbjct: 847 EMETVEKLIPKVMDSAI--RLNIPLKVE 872 >gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] Length = 872 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 92/568 (16%), Positives = 189/568 (33%), Gaps = 82/568 (14%) Query: 8 FETRSPIDLTK----------CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57 E S +D+ + + + AF F V D + L Sbjct: 297 VEKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTVY-IDVFQ----TEDL 351 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 KE E D H + V + ++ ++I T V+A + + LK Sbjct: 352 KEIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK 409 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175 + E I F KG D+ K + L C V + ++ ++L Sbjct: 410 KYLKVDVPSYEGI--FGKG------RDKKKIEEIDENILADYICSRCVYL-FDLKEKLMN 460 Query: 176 --------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + L E L + +++ G+ +D + L+Q +D ++ ++ Sbjct: 461 FIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEA- 519 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G + ++L +LF + L + T+T ++L P Sbjct: 520 GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPY--------------- 564 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + + +++ ++ F P +R H Q++T Sbjct: 565 -------------NDIVSDIIEYRQLTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATG 610 Query: 348 TSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R I S +V AD + IE RVLA ++G++ +++ Sbjct: 611 RISSTEPNLQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIES 670 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F ED+++ T + F V +VT + R K + + Y ++ ++ Sbjct: 671 FMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDY---GLSRDLKISRKE 727 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + E A E+ ++ T R ++ + +SR Sbjct: 728 AKEYINN------YFERYKGVKEYIEKIVRFAKENGYVTTIMNR-RRYIPEINSRNFTQR 780 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLV 549 ++ + G A K V + Sbjct: 781 SQAERLAMNAPIQGSAADIIKMAMVKVY 808 >gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S] gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S] Length = 912 Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats. Identities = 94/527 (17%), Positives = 162/527 (30%), Gaps = 129/527 (24%) Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 + + L+ E L + + G VD H L Q Sbjct: 486 SRAVRDLAAALDTELADIEATGLLADMELPLLEVLANLESTGIAVDTTHLHDL-QSAFAA 544 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274 R E G + ++L+ LF E + T+T + + L + Sbjct: 545 RVAEAAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTTDADALQSLFEKTQ 604 Query: 275 QVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 F + R A + ++ L++ + DGR+ T Sbjct: 605 HPFLEHLLEHRDATRLKVTVDGLLKTVAEDGRIHTT------------------------ 640 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIE 385 +Q + +++P+ I +R + EG L+ AD + IE Sbjct: 641 -------FNQTVAATGRLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIE 693 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R++A ++G+ ++AF TGEDL+ +R+F V +VT + R K M L Y A Sbjct: 694 MRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSA 753 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 +A+ ++ Sbjct: 754 F---GLAAQLKISTEEA------------------------------------------- 767 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 ++ +R + + LH+ EQ + G RR LP Sbjct: 768 -RQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRY---------------LP-- 809 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620 LN+ RQ RE L I Q + DI+ M++ +A Sbjct: 810 -------------DLNSDNRQ-RREVAERAALNAPI-QGTAADIIKVAMIDVQRALREAG 854 Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 ++L VHDE+V E + L M + +PL+ Sbjct: 855 LASRMLLQVHDELVLEVAAGERERVEQLVREKMAAAID--LSVPLEV 899 >gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] Length = 890 Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats. Identities = 104/648 (16%), Positives = 189/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D H++ + Sbjct: 337 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 393 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 394 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 445 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 446 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 505 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 506 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 564 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 565 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 618 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 619 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 653 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 654 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 713 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 714 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 741 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 742 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 785 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 786 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 814 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 815 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 862 >gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1] Length = 892 Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats. Identities = 104/648 (16%), Positives = 189/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss] gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14] gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg] Length = 866 Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats. Identities = 99/580 (17%), Positives = 185/580 (31%), Gaps = 71/580 (12%) Query: 28 VCVILFAFGF-DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 + L V + D + +LK + + + + LK + Sbjct: 324 PSLRLHGVALSGGDEVFYIEISGDQEI-ALLKAFFADATTKFFGYRTKRDNHALKNH-GI 381 Query: 87 DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK-ELIARFCKGETHECLYDR 145 D+ + LVLA+ L G + + +E G + A F K L + Sbjct: 382 DVHVT---ADLVLAQH------LVNGGAKISFQTLLVESGHIQEAAFFAKEWGASSLPVQ 432 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCV 199 N P + + FG + ++ +F++LE + EQ L + + G + Sbjct: 433 NLPQNPAQY--FGIFVSRLPSIKNYLFEKLEEKGLKSIFKNVEQPLEEILFAMECAGMPL 490 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D L++ + E QE+ L G + + ++L L+ G+ D ++T Sbjct: 491 DSEGLLVLDRDLSKELETYTQEIYDLA-GCEFNIKSPKQLSDVLYHRLGIKPVDKAKSTK 549 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + + ++ F + Sbjct: 550 AEVLEALEGSHEIISKILA-------------------------------FRATEKMLST 578 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-ASEG 373 P Q R H +Q+ T DP+ I +R E Sbjct: 579 YVRALPRQIDLGTHRVHPTFNQVGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKEN 638 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 + AD + +E R LA ++ ++ +AF++GED++ T ++ FNV QVT+ QR K Sbjct: 639 DYFLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAK 698 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + L Y A ++ +++N L+ A + A F E + Sbjct: 699 AVNFGLAYGQQAY---GLSKNLKISVNEAQGLIDAYFAR--YPQASEFITHTIEQASKEQ 753 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 +G ER+ W + L T G A K + + Sbjct: 754 KVTTMLGR--ERILSDW-ESSPGARAASGRL---AVNTRIQGSAAELIKLAMLNISRELV 807 Query: 554 DKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + L+L L++ + ++ Sbjct: 808 SRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAM 847 >gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] Length = 898 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 101/648 (15%), Positives = 193/648 (29%), Gaps = 132/648 (20%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 + F P + L + +V + H+ + A + Sbjct: 354 GYVFGGEPALI-----SEEDSAAFSALLSDPNVGKIGHSMK---VQIHAWLGEGYTLAGI 405 Query: 94 ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNH 150 + + P + + + G ++ + GE + L R H Sbjct: 406 VGDTEIDAYLLHPDQRTYDFTDLVQRYLAIDLGGGAQDTLGIGLDGEIVDDLAARAVATH 465 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 T E L + E + + + RG VD L+ Sbjct: 466 D------LRDAFARALETEEQSDALREM---ELRVCDVLARMEQRGIAVDADQLARLHAD 516 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 D + + + ++L+ LF + GL T++ + ++L Sbjct: 517 FDARVNQAATQAWEAIGDSSVNLSSPKQLQAVLFDQLGLPKTKKTKSGYTTNADALEQLL 576 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 + +++ A ++ + L +A+ +LR +++ R G Sbjct: 577 VKISMREDDQALAGQNFLTGLLAHRDAI----KLRQSVE-----GLQRSLGDD------- 620 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKK-LVVADLAGI 384 R Q + ++DP+ I +R + +G L+ AD + I Sbjct: 621 --QRIRTTYQQTVAATGRLSSTDPNLQNIHARTEEGQKIREVFVPGDGYDYLMTADYSQI 678 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++G+ + AF G DL+ +R F VA ++VT QR+ K M L Y Sbjct: 679 EMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAESEVTPAQRSKIKAMSYGLVYGLS 738 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A +++ + + +L Sbjct: 739 AF---GLSAQLKIPVPEAQNL--------------------------------------- 756 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 SR + L Q ++G RR LP Sbjct: 757 -----MDGYFSRFGRVKEYLDGLVAQARKDGFTQTLLGRRRY---------------LPE 796 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619 ++T + RE L I Q + DI+ M+N + Sbjct: 797 L----------------SSTNRQVRESAERMALNAPI-QGSAADIIKIAMLNVERELAAA 839 Query: 620 -AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 ++L VHDE+V E ++ + M + +W +PL Sbjct: 840 QLSSRVLLQVHDELVLEVAASEAEQVEAIVREQMGN--AWELSVPLSV 885 >gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus] Length = 954 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 83/550 (15%), Positives = 164/550 (29%), Gaps = 141/550 (25%) Query: 142 LYDRNKPNHREAWRLFGEYCK---------GDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 R P+ D + R RL L+ E L + + Sbjct: 510 GAKRTVPDEPTLAEQLVRKAAAIWALEEPLMD-ELRRNEQDRL--LTELEHALAGILANM 566 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + + +++ + L G + ++L T LF + L + Sbjct: 567 EFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA-GQEFNINSPKQLGTVLFDKLQLPVL 625 Query: 253 DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+T VL + + R + + L++ ++ Sbjct: 626 KKTKTGYSTSADVLEKLAPHHEIVEHILHYRQL-GKLQSTYIEGLLKVVH---------- 674 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364 P + H +Q +T + +P+ I + Sbjct: 675 --------------------PVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKI 714 Query: 365 RSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 R + SE + AD + IE RVLA +A + ++AF D++ T F+V+ Sbjct: 715 RQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSEED 774 Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483 VT + R K + + Y +A + A + E + + + Sbjct: 775 VTANMRRQAKAVNFGIVYGISDY---GLAQNLNITRKEAAEFI------ERYFASFPGVK 825 Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543 +N + A + ++ T + +R Sbjct: 826 QYMDNIVQEAKQKGYVTT-------------------------------------LLHRR 848 Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603 R +P + R+ R R+ +NT +Q Sbjct: 849 RYLPDITS--------------RNFNVRTF-AERTAMNTP------------------IQ 875 Query: 604 AVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656 + DI+ + M++ + ++L HDE++ E P + L +M + Sbjct: 876 GSAADIIKKAMIDLSVSVREERLQARLLLQGHDELILEAPKEEIGRLCRLVPEVMEQAVT 935 Query: 657 WAKGLPLKAE 666 +PLK + Sbjct: 936 --LRVPLKVD 943 >gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 921 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 93/618 (15%), Positives = 187/618 (30%), Gaps = 149/618 (24%) Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120 E+ + + N ++ VL I + + T++L+ +L Sbjct: 403 EDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFD 459 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 + K + T + P Y D +T ++ L+P Sbjct: 460 HQPISFKSVCGTGKSAITFN-----HVPIPA-----ATRYAAEDADITFRLWALLKPRLS 509 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++ L + + G VD H L+ + ++L++E+ L G Sbjct: 510 SDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYVLA-GCR 568 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF GL +++ ++ ++L + + + Sbjct: 569 FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGEAIASK---------- 618 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L++ S+ + P R H + Sbjct: 619 -----------------ILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRL 661 Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I I +R+ IA +G L+ AD + IE R+ A +A E+ L+AF Sbjct: 662 SSTDPNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFRE 721 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 ED++ T + F V ++ RA K + A G++ A Sbjct: 722 KEDIHALTAKQLFG----HVDRESRARAKTIN--------------FAILYGISAWGLAA 763 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 ++ + A+ E P + + + Sbjct: 764 RLEIDR-----FSAQEMIDRYFERFP----------------------------AIRHYI 790 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + + +G + P GR + + Sbjct: 791 DRTLDFVRLHG-----------------------YVETPFGRKTHLPAIK---------S 818 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEIVCETP 637 R++T + +Q +S DI+ M+ A ++L VHDE++ E P Sbjct: 819 RKVTERQAAERQAINAPIQGMSADIIKRAMVRMEPALAKAGLSSVKMLLQVHDELIFEVP 878 Query: 638 DTDEFNAS-MLYHLMTSN 654 + D A ++ +M Sbjct: 879 EEDIEKAKPVIRQVMMEA 896 >gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 868 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 84/520 (16%), Positives = 170/520 (32%), Gaps = 127/520 (24%) Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 K + + ++ E E+ L + + G VD + + + L + Sbjct: 451 AKNRIFQELKDTEQWELYRDVEEPLVPVLYRMEKAGILVDKEALLSYGEELKKNIAMLQE 510 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVF 277 E+ ++ G + ++L LF + L T+T VL ++ P ++ Sbjct: 511 EIYAMA-GEEFNINSPQQLGGILFEKMQLPGGKKTKTGYSTAVDVLEKLQEDYPIVGKIL 569 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R S+ L + D R+ G+ Q Sbjct: 570 EYRT-YSKLNSTYAEGLSNYVGEDQRIHGSFQ---------------------------- 600 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 Q++T +++P+ I RS I EG + AD + +E R+LA + Sbjct: 601 ---QMVTATGRLSSTEPNLQNIPIRTEMGRVFRSVFIPKEGSVFLDADYSQVELRLLASL 657 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ ++A+ D++ T + F+V +VT + R K + + Y A + Sbjct: 658 SKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAVNFGIVYGISAFGLSE-- 715 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 GL+++ ++A+ + ++P+ + + R+ Sbjct: 716 ---GLSISR--------------QEAKEYIERYFTSYPK-------VKEYLDGEVAFARE 751 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 HS V L+ +RR +P ++ N + Sbjct: 752 -HSFVKTLF-------------------GRRRPLPEIHA---SNFMRRSF---------- 778 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626 + R +N +Q + DI+ + M+ IVL Sbjct: 779 --SERVAMNAP------------------IQGTAADIIKKAMVIVDQKLSEKNCQSRIVL 818 Query: 627 TVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 +HDE++ E + E +L M S L ++A Sbjct: 819 QIHDELLLEVVKEELETVKDILVSAMEHVVSLPVPLIVEA 858 >gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] Length = 907 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 104/547 (19%), Positives = 170/547 (31%), Gaps = 139/547 (25%) Query: 146 NKPNHREAWRLFG--EYCKGDVTVTREIFKRLEP---------LSSKEQELWYLDQTIND 194 N P E + E +T + + L P E+ L + + + Sbjct: 463 NMPIVAERYLRTTWPEDAATRAAITYRLLQDLPPHLDEARRKLYEEVEKPLSAVLKRMEV 522 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 RG +D L++ + L+ E+ L G + R ++L+T L+ E GL Sbjct: 523 RGVRLDSDYLRGLSEALAGRIATLEAEIHRLA-GREFAIRSRDQLETVLYDELGLASGKK 581 Query: 255 TETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 T+ T +R L + P + R +LRGT Sbjct: 582 TKLTGKRSTAVSALEPLRNEHPIIPALLEYRELE-------------------KLRGT-- 620 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCV 364 P PR R H Q + +P+ I + + Sbjct: 621 ----------YLDPLPNLVNPRTGRLHTTFSQTTAATGRLSSLNPNLQNIPIRSELGREI 670 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R IA EG L+ AD + IE R+LA +A + +AF G D++ T A+ +A + Sbjct: 671 RKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREGADIHRRTAAQVLGLAEDAI 730 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 T +QR K + G++ + +N + +A F Sbjct: 731 TPNQRRAAKTVN--------------FGVLYGMSAHRL-----SNELGIPYAEAAQFIDV 771 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 +P I ER R+ H V L+ +RR Sbjct: 772 YFNTYP-------GIRRYIERTLDFGRE-HGYVETLY-------------------GRRR 804 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 VP + + N R+ Y +Q Sbjct: 805 YVPELKSQ----------------------------NRVIREAGERLAY-----NMPIQG 831 Query: 605 VSRDILAEGMMNAT----KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659 + DI+ M+ G ++L VHDE++ E P T + L +M Sbjct: 832 TAADIIKIAMVRLDQELDALGARLLLQVHDELLIEAPATQADRVAALTREVMEQAAH--L 889 Query: 660 GLPLKAE 666 +PL E Sbjct: 890 SVPLAVE 896 >gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2] Length = 892 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 106/648 (16%), Positives = 191/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D V H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E +E + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD + L D T+ + G + ++L+ LF + + T+ Sbjct: 508 IAVDTDIFEGLRSEFDERVTRAQEAAWE-AAGEKINLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R V Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGV 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13] Length = 877 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 79/500 (15%), Positives = 158/500 (31%), Gaps = 129/500 (25%) Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + G VD A + + + K+++++ L G + ++L Sbjct: 480 MPLTLVLGEMEALGIKVDKARLEEMGTDLGEKLEKIEEKIFDLA-GEKFNINSPKQLGVI 538 Query: 243 LFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + GL T+T VL + Q+ + R + + L++ ++ Sbjct: 539 LFEKLGLPPVKKTKTGYSTSADVLEKLAEKHEVIQQILHYRQL-GKLKSTYIEGLLKVIH 597 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 D ++ H +Q +T + DP+ I Sbjct: 598 ED------------------------------SNKIHTRFNQALTQTGRLSSIDPNLQNI 627 Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R I S E + AD + IE RVLA +A ++ ++AF+ D++ T Sbjct: 628 PVRLEEGRKIREAFIPSHEDWVIFAADYSQIELRVLAHIANDEKLIEAFKEDADIHTKTA 687 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 F+V+ +VT + R K + + Y + + G+ + Sbjct: 688 MDVFHVSEDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---SLGITRKDAKTFID------ 738 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + ++ + E+ A + ++ T Sbjct: 739 RYLESFPGVKEYMEDSVLDAKDKGYVTTLL------------------------------ 768 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +RR +P + + RS R+ +NT Sbjct: 769 -------HRRRYLPEITSSNF---------NLRSFA------ERTAMNTP---------- 796 Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ + M++ ++L VHDE+V E P + + Sbjct: 797 --------IQGSAADIIKKAMIDMANRLEEENMKSKVLLQVHDELVFEAPKDEIEKLKKI 848 Query: 648 Y-HLMTSNPSWAKGLPLKAE 666 +M +PLK + Sbjct: 849 VPEVMEQAVE--LKVPLKVD 866 >gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773] Length = 893 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 101/625 (16%), Positives = 184/625 (29%), Gaps = 156/625 (24%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 L+ +EN + N + + K L + + +LA L Sbjct: 372 ELRAVIENPAIIKNVFNVKAQLVMFKR---LGLALQGVDFDFLLAAYL-----LDTTAN- 422 Query: 116 LKLSSQKMEEGKELIARFCKG-ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREI-- 171 E L RF + E +Y + E + ++ Sbjct: 423 -------DNELSTLAQRFDVYVQPDEEIYGKGAKFAVPEDVDRVLMHLGQKADALMQLET 475 Query: 172 --------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +++ + E L ++ + RG ++ A R + ++ Sbjct: 476 PTLAALTDHEQMHLYTDIELPLAHVLADMEYRGIAINQARLAE-IGTDLTGRIQAIEDAI 534 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNR 280 L G + ++L LF + GL + T+T VL P V R Sbjct: 535 YLEAGEKFNINSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEKLAHQAPIVDYVLQYR 594 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + + S+ H Sbjct: 595 QLA-------------------------------KLKSTYVDGLLAVVNQKDSKIHTRFL 623 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394 Q +T + DP+ I +R+ + S ++ AD + IE RVLA M G Sbjct: 624 QTLTQTGRLSSVDPNLQNIPMRSDEGRQIRTAFVPSQPDWQIFGADYSQIELRVLAHMTG 683 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 ++ +AF GED++ T F + V QR K + + Y +A+ Sbjct: 684 DKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIVYGISDF---GLAN 740 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ + T +++ WM EN A ++ T Sbjct: 741 NLGISRAQAKQFIDT-----YFKEFPKVHEWM-ENIKAVAHAQGYVET------------ 782 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 IA++RR +P ++ K + RS Sbjct: 783 -------------------------IAKRRRYLPDIHAKNF---------NLRSFA---- 804 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLT 627 R+ +N+ +Q + DI+ M+ A ++L Sbjct: 805 --ERTAMNSP------------------IQGSAADIIKIAMIKVADALAENNMQARMLLQ 844 Query: 628 VHDEIVCETPDTDEFNASMLY-HLM 651 VHDE++ E P ++ + L +M Sbjct: 845 VHDELIFEAPTSEIPALTALVTKVM 869 >gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 870 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 74/500 (14%), Positives = 155/500 (31%), Gaps = 129/500 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + G V+ + + + +L++E+ + G + ++L Sbjct: 474 EMPLLFTLFAMEQAGVRVEAEALRFYGEQLGTKIVELEKEIYAQA-GEAFNINSPKQLGV 532 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L T+T KL P+ ++ R + + L + Sbjct: 533 ILFEKLKLPHGKKTKTGYSTAADVLDKLAPEYPVVEKILEYRQLTKLKSTYA-DGLANYI 591 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +DGR+ H + +Q IT +++P+ Sbjct: 592 CADGRI-------------------------------HGKFNQTITATGRISSTEPNLQN 620 Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I + +R I EG V AD + IE R+LA +G+Q + A+ +D++ T Sbjct: 621 IPVRMELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITA 680 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 ++ F+ +VT+ QR K + + Y + + + + + Sbjct: 681 SQVFHTPFDEVTELQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEASEYI------- 730 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + + ++ ++ Sbjct: 731 ----------------------------------DRYFETYPGIKKFLDDTVAHAKEM-- 754 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + +RR VP + N + R +N Sbjct: 755 GYVVTLFGRRRPVPEL---ASSNFMQRSF------------GERVAMNAP---------- 789 Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASM 646 +Q + D++ M+ K +VL VHDE++ E + + E + Sbjct: 790 --------IQGTAADVMKIAMIGVHRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKI 841 Query: 647 LYHLMTSNPSWAKGLPLKAE 666 L M +PL+ + Sbjct: 842 LKEQMEQAAQ--LDVPLEVD 859 >gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7] gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11] Length = 237 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 13/237 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L A+ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L + + K + GK LI RF K R H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E++K++ S E + +LDQ INDRG+ VDVALA + + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQR 237 >gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622] gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622] Length = 908 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 116/645 (17%), Positives = 201/645 (31%), Gaps = 150/645 (23%) Query: 48 VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLP 106 V +E LE+ V H + L N I +H + L P Sbjct: 377 VRPEAFTAAFREVLEDAAVKKGGH----DLKALSLVLANDGITLHGAHDDVELLSYLLNP 432 Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166 S + + LS +++ EL E DR +H + + Sbjct: 433 SRREH--ALVDLSRERLN--TELPPLPPAAEGKRGKKDRALADHTVE-EVATGFAIR-AE 486 Query: 167 VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 R + L E L L + RG +D A + VD Sbjct: 487 AARRLAPELWKELEAAKLAALARDMELPLLPLLAQMERRGVLLDTAELSRTSVKVDAAVE 546 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQA 273 +E+ G + +L LF E L + +T Q VL + P Sbjct: 547 AQVKEVYRHA-GREFNIGSNPQLVEVLFTELKLPIIKRGKTGPSADQEVLEKLSEEHPLP 605 Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333 + R S+ L+TL + +DG Sbjct: 606 GAIIEYR-SLSKLKSTYLDTLPTLVAADG------------------------------- 633 Query: 334 RSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARV 388 R H Q T ++DP+ I + +R +A+EG +LV AD + +E R+ Sbjct: 634 RIHTTYHQAATATGRLSSTDPNLQNIPVRTDLGREIRRAFVAAEGHQLVSADYSQVELRL 693 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA +A + ++AF ED++ T A F VA QV ++QR + K++ + Y Sbjct: 694 LAHIANDPVLIEAFLHDEDIHTRTAAEVFGVAKEQVDREQRRVAKMVNFGIAYGLSP--- 750 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + + G+ + +++ Sbjct: 751 HGLGARLGIAQDVARDIIE----------------------------------------- 769 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + +R + + L + ++ + G RR + L S Sbjct: 770 ---RYFTRYAGIRRYLEETVDRARKTGYVETLYGRRR------------YMADLNSKNRG 814 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------ 622 V + R+ +N +Q + D++ + M+ +A Sbjct: 815 VAQAA--ERAAINMP------------------IQGTAADLIKKAMLAVDEALTAQKLRT 854 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E PD + L M+S +PLK E Sbjct: 855 RMLLQVHDELLFEAPDAEVEQVKALAVKAMSSVAD--LKVPLKVE 897 >gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 921 Score = 230 bits (585), Expect = 7e-58, Method: Composition-based stats. Identities = 93/618 (15%), Positives = 189/618 (30%), Gaps = 149/618 (24%) Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120 E+ + + N ++ VL I + + T++L+ +L Sbjct: 403 EDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFD 459 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 + K + T + P Y D +T ++ L+P Sbjct: 460 HQPISFKSVCGTGKSAITFN-----HVPIPA-----ATRYAAEDADITFRLWALLKPRLS 509 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++ L + + G VD H L+ + ++L++E+ +L G Sbjct: 510 SDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYALA-GCR 568 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF GL +++ ++ ++L + + + Sbjct: 569 FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGEVIASK---------- 618 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L++ S+ + P R H + Sbjct: 619 -----------------ILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVGAQTGRL 661 Query: 350 ITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I I +R+ IA +G L+ AD + IE R+ A +A E+ L+AF+ Sbjct: 662 SSTDPNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQE 721 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 ED++ T + F V ++ RA K + A G++ A Sbjct: 722 KEDIHALTAKQLFG----HVDRESRARAKTIN--------------FAILYGISAWGLAA 763 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 ++ + A+ E P + + + Sbjct: 764 RLEIDR-----FSAQEMIDRYFERFP----------------------------AIRHYI 790 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + + +G + P GR + + Sbjct: 791 DRTLDFVRLHG-----------------------YVETPFGRKTHLPAIK---------S 818 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEIVCETP 637 R++T + +Q +S DI+ M+ A ++L VHDE++ E P Sbjct: 819 RKVTERQAAERQAINAPIQGMSADIIKRAMVRMEPALAKVGLSSVKMLLQVHDELIFEVP 878 Query: 638 DTDEFNAS-MLYHLMTSN 654 + D A ++ +M Sbjct: 879 EEDIEKAKPVIRQVMMEA 896 >gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 872 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 92/568 (16%), Positives = 189/568 (33%), Gaps = 82/568 (14%) Query: 8 FETRSPIDLTK----------CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57 E S +D+ + + + AF F V D + L Sbjct: 297 VEKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTVY-IDVFQ----TEDL 351 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 KE E D H + V + ++ ++I T V+A + + LK Sbjct: 352 KEIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK 409 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL-- 175 + E I F KG D+ K + L C V + ++ ++L Sbjct: 410 KYLKVDVPSYEGI--FGKG------RDKKKIEEIDENILADYICSRCVYL-FDLKEKLMN 460 Query: 176 --------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + L E L + +++ G+ +D + L+Q +D ++ ++ Sbjct: 461 FIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEA- 519 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G + ++L +LF + L + T+T ++L P Sbjct: 520 GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPY--------------- 564 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + + +++ ++ F P +R H Q++T Sbjct: 565 -------------NDIVSDIIEYRQLTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATG 610 Query: 348 TSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R I S +V AD + IE RVLA ++G++ +++ Sbjct: 611 RISSTEPNLQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIES 670 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F ED+++ T + F V +VT + R K + + Y ++ ++ Sbjct: 671 FMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDY---GLSRDLKISRKE 727 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + E A E+ ++ T R ++ + +SR Sbjct: 728 AKEYINN------YFERYKGVKDYIEKIVRFAKENGYVTTIMNR-RRYIPEINSRNFTQR 780 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLV 549 ++ + G A K V + Sbjct: 781 SQAERLAMNAPIQGSAADIIKMAMVKVY 808 >gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT] gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT] Length = 878 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 95/633 (15%), Positives = 196/633 (30%), Gaps = 162/633 (25%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK EN + V H+S VLK +I +A PS + Sbjct: 376 EILKNLFENEKIKKVCHDSKKVYVVLKKH---NIAAKNIAFDTKIAAYLLQPSKSDYM-- 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +++ E + + + E + D+ + Sbjct: 431 --------LKDLIEEMLLLSLKDDDNIKINETYYIKD-----VYEKLEKDIKKS-----N 472 Query: 175 LEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 +E L + E L + ++ G+ VD + + E L++E+ L + Sbjct: 473 MEELLYTVELPLIEVLASMECEGFRVDENRLTEIGEKFKKEIETLEKEIHELAD-EEFNI 531 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF + L + T+T VL K P ++ R + Sbjct: 532 KSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIIEKIIEYRQITKLDSTY- 590 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L ++ D ++ H +Q +T Sbjct: 591 VEGLKNVIDEDAKI-------------------------------HSSFNQTVTTTGRLS 619 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFET 404 +++P+ I +R + + + + AD + IE R+L+ +A ++ + AF+ Sbjct: 620 STEPNLQNIPIKHEMGREIRKVFVPNNDESVIFSADYSQIELRILSHIADDEKLIDAFKH 679 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +D++ T + F V +VT R+ K + + Y GA + ++ Sbjct: 680 HKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLS---KDINVSRKEAKE 736 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + T + + + + + A D F+ Sbjct: 737 YIDT--YFSRYPNVKKYIDEIIS----KAEVDGFV------------------------- 765 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 I ++R +P + R+ + R G R +NT Sbjct: 766 ------------TTILNRKRYIPEI--------------QSRNKIVRGFGE-RLAMNTP- 797 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC---- 634 +Q + DI+ M+ ++L VHDE++ Sbjct: 798 -----------------IQGSAADIIKLAMVEVYNELKNRNLKSTLILQVHDELILNVYK 840 Query: 635 -ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E + E + ++M +PL+A+ Sbjct: 841 DELEEVKEMVVDKMENVMKLL------VPLEAD 867 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 96/663 (14%), Positives = 212/663 (31%), Gaps = 162/663 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60 +D E+ D G+ ++ ++ F+F +++ H + L+ A Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQI--SLQSA 368 Query: 61 LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + +V + HN ++ +++ F+L++P ++ T++LA + AL Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ + + +Y D +T + Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474 Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LE PL E + + + + G +D L + + E L +E+ +L Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL++ P ++ + R + Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSRKKGKTGYSTDEKVLNALLDKHPAITKILDYR-ELA 592 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D + SR + Q T Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC +A +G + D + IE R+LA + ++ L Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ T F + + R++ K + L Y G ++ ++ + Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + + Sbjct: 737 HLA--------------------------------------------KSYIEKYFENFTS 752 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +NG + SGR + Y Sbjct: 753 IKKYFETVKNEAKQNG-----------------------FITTLSGR----------KRY 779 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636 + + + Y + +I+Q + D++ M+ K + ++L +HDE++ E Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839 Query: 637 PDT 639 D Sbjct: 840 KDD 842 >gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101] gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101] Length = 1045 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 120/722 (16%), Positives = 232/722 (32%), Gaps = 161/722 (22%) Query: 7 DFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQVL 57 D ET S P D GI +G + V H + + L Sbjct: 386 DTETTSLEPRDAELVGIG----------CCWGKNMEDVAYIPTGHKTDKNLDKVTVLESL 435 Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 K LE+++ V NS F+R V C + + +LA P A Sbjct: 436 KPVLESSEYPKVFQNSKFDRLVF-RCQGIKL--TGVFFDTMLASYVLNPEA------KHS 486 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE- 176 L + + + + + +N+ +YC V VT ++ ++L Sbjct: 487 LEEIYIRYLRNVGINLQSYQD---VVSKNQTIADLDILKVADYCGTQVWVTFQLVEKLRT 543 Query: 177 -----------------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE----- 214 L EQ L + + +G +D+ + + + Sbjct: 544 ELEKADKNKSTEKSLYRLLVDVEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEEIE 603 Query: 215 ------------RTKLDQELESLTYGLVSSSRCLEK------LKTWLFLETGLHLEDL-- 254 + L E+ + + S+ + L+K LK ++ H ++L Sbjct: 604 KRAFKTVDSQVLQKYLQTEIHEIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNLEN 663 Query: 255 TETTCQRV-------LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR---- 303 E+ +V L+S +L+ ++ N + SR +T V A+ Sbjct: 664 IESQINQVETRDLLNLNSPSQLSELLFRILNQNHKKSRRIKTGYSTDVVALEKLQTEPEH 723 Query: 304 ---LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 + L + P R H +Q T +S+P+ I Sbjct: 724 HPIIDEILNHRTLYKLFSTYVEAIPRLVRSDTQRVHTNFNQTQTDTGRLSSSEPNLQNIP 783 Query: 361 -----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 S +R + + LV AD + IE R+LA ++ E ++A++ +D++ T Sbjct: 784 IGTKFSRQIRQAFLPKKDWLLVAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAKL 843 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F +++ ++R +GK + + Y GA QK+A + + + + E++ Sbjct: 844 LF--EKEEISSEERRVGKTINFGVIYGMGA---QKLARSVKITVKESKQFL------EKY 892 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + E + AI ++ T R + EL + +++ Sbjct: 893 KQQYSLVFAYLEKLKKQAIAKGYVETILGRRRYF-------------ELESKTIRDLKDK 939 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++ + Q+ R Sbjct: 940 EP---------------------------------EEINLQELKFSQNDAQILRSAANSP 966 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIVCETPDTD-EFNASMLYHL 650 +Q S DI+ M+ K ++L VHDE+V E P ++ E ++ Sbjct: 967 ------IQGSSADIIKIAMIRLNKILTNYQTKLLLQVHDELVFEVPPSELEKMQQLIKST 1020 Query: 651 MT 652 M Sbjct: 1021 ME 1022 >gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] Length = 879 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 102/661 (15%), Positives = 207/661 (31%), Gaps = 160/661 (24%) Query: 8 FETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL-----KE 59 E+ S I D G+ A + ++ F+F ++ H +P + K Sbjct: 313 LESESIIAFDTETTGLN--AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQTAKR 370 Query: 60 ALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 AL I+ HN ++ +++ F L P ++ T++LA + AL+L Sbjct: 371 ALGQIYSHFIIGHNLKYDFAIIENNFKL-TPPKKYADTMILAWLYNPSLRVNMDDLALRL 429 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KR 174 K + ++ + + Y D +T + K Sbjct: 430 FDYKTLHFESVVK-------------KGENFASVELEKACNYAAEDAYITLRFYLYFLKN 476 Query: 175 LEPLS-----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 LEP E + + + G ++ L Q + E L +E+ +L Sbjct: 477 LEPNLLKLGFESEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYTLCDD- 535 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF + L T+T ++VL + P ++ R ++ Sbjct: 536 KFNLNSPKQVGDVLFEKLNLPSAKKTKTGYSTDEKVLENLVDKHPVVSKILAYR-ELAKL 594 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L++ D SR + Q T Sbjct: 595 YSTYCEPLLKLALKD-----------------------------ENSRIYSSFLQTGTAT 625 Query: 347 PTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I + +SC IA +G + D + IE R+LA + ++ L+A Sbjct: 626 GRLSSKEPNLQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEA 685 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ ED++ T F + + R++ K + L Y G ++ ++ + + Sbjct: 686 FKNDEDIHARTAIMIFG----ENNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEASL 738 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 K+ + + + + Sbjct: 739 A--------------------------------------------KEYIEKYFANFTSIK 754 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + + NG + SGR + Y + Sbjct: 755 SYFERVKNEAKING-----------------------YISTLSGR----------KRYFD 781 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCETPD 638 + + Y + +I+Q + DI+ M+ K A ++L +HDE++ E D Sbjct: 782 FANAKPMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEVKD 841 Query: 639 T 639 Sbjct: 842 E 842 >gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114] gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114] Length = 925 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 92/570 (16%), Positives = 181/570 (31%), Gaps = 107/570 (18%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV------------- 52 ID ET S ++ ++ + +++ H Sbjct: 345 IDTETNSLN----------SQKADLVGISLAINENEAYYVPVGHKNKQDPNLKKQIKIKE 394 Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSAL 109 + +VLK LE+ V V N ++ LK I + + T++L+ S L Sbjct: 395 LVKVLKPYLEDETVKKVGQNIKYD---LKIFLKYGIELKSFEDTMLLSYSLDAGVNRHNL 451 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + + K+++ T + + N Y D VT Sbjct: 452 DLLAKTH--LDHDNIKFKDVVGTGKSEVTFDEVLIDN----------AYRYACEDADVTL 499 Query: 170 EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 +++ + KE+ L + + + G +D + L+ + L+ Sbjct: 500 KLYNLFKDRIVKEKCFQIYETLEIPLVDVLARMENNGIKIDQVILKKLSNSFSADLKTLE 559 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-KLTPQAI 274 +++ L+ G + ++L L+ + + T+ T VL K Sbjct: 560 KKIYKLS-GEEFNIASTKQLGDILYEKLKISGTKKTKKGNFATNVNVLEDLASKGNEFPK 618 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 V R + S+ P R Sbjct: 619 LVLEWRQK-------------------------------SKLKNTYTDSLPEYIDKNTKR 647 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVL 389 H T ++DP+ I +RS ++ +G ++ AD + IE RVL Sbjct: 648 IHTSFLLAATSTGRLASADPNLQNIPIKSKEGKLIRSAFVSEKGSSIISADYSQIEMRVL 707 Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449 A +A + KAF+ ED++ T ++ F ++ +D R K + + Y + Sbjct: 708 AHVADVKELKKAFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINFGIIYGISSYGLA 767 Query: 450 KMASTTGLNLNT--FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 K S + F++ K + ++ FCR ++ F+ T R K Sbjct: 768 KQISVSNPEAEQFLFSYFKKFPEIRDYMQETLEFCR-----------KNGFVQTMFNR-K 815 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKA 537 + + + L + +A G A Sbjct: 816 CHFPNINDKNHTLKSFQERAAINAPIQGAA 845 >gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13] Length = 237 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 13/237 (5%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M L++D ET S DL K G YAE +++ + FD+ PV++WD MP+ L+ Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 A+ ++++ +V N F+R V+K C+ ++ + I T+++A + LP +L A+ Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169 E L + + K + GK LI RF K R H + W F Y K D+T R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E++K++ S E + +LDQ INDRG+ VDVALA + V + +L +E + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQR 237 >gi|332701547|ref|ZP_08421635.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay] gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay] Length = 882 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 96/517 (18%), Positives = 164/517 (31%), Gaps = 119/517 (23%) Query: 161 CKGDVTVTR-EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 DV R E L E L + + G +D A + V+ + +L Sbjct: 463 ALHDVLAKRLAAANLTELLRDLEMPLVPVLVAMEQAGIAIDKAAFESFLSEVNAQIGELT 522 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275 + ++ + + R ++L LF GL + T ++T VL + P Sbjct: 523 SRIHAVA-EMPFNIRSNQQLAQLLFDRLGLKAKGKTPGGAQSTANPVLEKLRNEHPVVAD 581 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 + RM + L L + + GR+ T Sbjct: 582 ILEFRMLEKLRSTY-LEPLPKLADEQGRIHTT---------------------------- 612 Query: 336 HEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLA 390 +Q+ T +S P+ I +R+C A G L AD + IE RVLA Sbjct: 613 ---FNQLATATGRLSSSAPNLQNIPIRGPQGTRMRACFTAGPGCLLAAADYSQIELRVLA 669 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 M+ + L+AF G+D++ T F+ QV D+R K + L Y G QK Sbjct: 670 HMSQDPTLLEAFRHGQDIHARTAGLIFDKDAGQVAPDERRSAKTINFGLLYGMGP---QK 726 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A+ G+ L ++ + + ++ + A ++ + T R ++ Sbjct: 727 LAAELGIALAQAKEFIERYFVG------LSKLKEFYDSIVKEAEQNGSVVTMLGR-RRLL 779 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 HSR L + + T G A + L R+ Sbjct: 780 PDIHSRNDNLKAQAVRQAINTRIQGSAADI-------------------IKLAMIRAHAD 820 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 + GG+L L VHD Sbjct: 821 EKI-----------------RALGGRLI---------------------------LQVHD 836 Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666 E++ ETP+ A + + +M +PL + Sbjct: 837 ELLLETPEATAQEAGARMKEIMAGIVE--LSVPLVVD 871 >gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149] gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149] Length = 902 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 100/626 (15%), Positives = 180/626 (28%), Gaps = 141/626 (22%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L + V H+S R A + LA P + AL+ Sbjct: 384 LADPARPKVLHDSKHARL---AFAARGWSLAGVARDTELAAYLARPDQRSYDLTDLALRY 440 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYC-KGDVTVTREIFKRL 175 +++ + T + L D + R + D ++R+ + Sbjct: 441 LHRELRVDAPETGQL----TFDGLGDDGEAEQNLMLQARATLDLADAIDAELSRDGEQSA 496 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 ++ E L + + G D+ L E Q + G + Sbjct: 497 RLMAQVELPLSEVLAAMQRVGIAADLDYLQELEAHFAGEVKSAAQGAYA-AVGREFNLGS 555 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLN 292 ++L+ LF E GL +T + + L Q + R ++ Sbjct: 556 PKQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEHLLRHRDVAKLKTTVD 615 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L+++++ DGR+ T Q + ++ Sbjct: 616 GLLKSVSEDGRIHTT-------------------------------FKQTVAATGRLSST 644 Query: 353 DPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 DP+ I +R + +G + L+ AD + IE R++A ++ + ++AF +G Sbjct: 645 DPNLQNIPIRTEEGRRIRRAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGH 704 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D + T + F V A+VT DQR K M L Y A + G+ L Sbjct: 705 DFHAATASSVFGVPVAEVTADQRRKIKAMNYGLAYGLSAFGLSQ---QLGITAEEARGL- 760 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + + L + Sbjct: 761 -------------------------------------------MDNYFAGFGGVRDYLQE 777 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + +G RR LP L + RQ Sbjct: 778 VVARARHDGYTSTILGRRRY---------------LP---------------DLVSDNRQ 807 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD 640 R+ L I Q + DI+ M+ ++L VHDE+V E + Sbjct: 808 -RRDMAERMALNAPI-QGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGE 865 Query: 641 EFNASMLYH-LMTSNPSWAKGLPLKA 665 L M ++ +PL+ Sbjct: 866 RDTLEALVRSQMGE--AYPLSVPLEV 889 >gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12] gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12] gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12] Length = 894 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 79/434 (18%), Positives = 156/434 (35%), Gaps = 47/434 (10%) Query: 160 YCKGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218 Y D+ K LE + E L + + G +D + + + L Sbjct: 473 YSCLDILEEDVKEKELEAVLWETELPLIPVLADMERIGIKIDRKYFEAYSLELTEKLALL 532 Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278 ++ + G + ++L LFL+ L T+T + + L+ Q Q+ + Sbjct: 533 EKAIWEEA-GEEFNLNSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLEHLSSQGFQIAS 591 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 N + ++ ++ P R H Sbjct: 592 NLL---------------------------EYRKLAKLKNTYVDPIPKMT-GEGDRIHTC 623 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393 QI T +SDP+ I +R IA EG KL+ D + +E RVLA ++ Sbjct: 624 YHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIAREGWKLLSIDYSQVELRVLASLS 683 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 ++ LKA++ +DL+ T R F + +V+++QR + K++ ++ Y +A Sbjct: 684 KDENLLKAYQEKQDLHSVTAKRIFELQEDEEVSREQRIMAKIINFSIIYGKTPF---GLA 740 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+++ +K ++ F R + EH + + G ++ Sbjct: 741 KELGISVKDAGEYIK--RYFAQYPRVAQFERQVITFAEEHGYVETYFGR-----RRIIDG 793 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR- 571 HS+ + ++ + T+ G A K+ + + K ++ L+L L++ Sbjct: 794 IHSKNKMVKSQAERMAVNTVVQGTAAEILKKVMIKIYSWLSQKTDIHLLLQVHDELIFEI 853 Query: 572 DVGNNRSYLNTTTR 585 G + Y R Sbjct: 854 QEGKLQEYEENLIR 867 >gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] Length = 879 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 95/663 (14%), Positives = 210/663 (31%), Gaps = 162/663 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60 +D E+ D G+ ++ ++ F+F ++ H + L+ A Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQI--SLQSA 368 Query: 61 LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + +V + HN ++ +++ F L++P ++ T++LA + AL Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ + + +Y D ++ + Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYISLRFYLYFL 474 Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LE PL E + + + + G +D L + + E L +E+ +L Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCE 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL++ P ++ + R + Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYR-ELA 592 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D + SR + Q T Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC +A +G + D + IE R+LA + ++ L Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ T F + + R++ K + L Y G ++ ++ + Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + + Sbjct: 737 HLA--------------------------------------------KSYIEKYFENFTS 752 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +NG + SGR + Y Sbjct: 753 IKKYFETVKNKAKQNG-----------------------FITTLSGR----------KRY 779 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636 + + + Y + +I+Q + D++ M+ K + ++L +HDE++ E Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839 Query: 637 PDT 639 D Sbjct: 840 KDD 842 >gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 81/501 (16%), Positives = 153/501 (30%), Gaps = 130/501 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E+ L + + G+ VD + ++ + KL+ ++ + G + ++L Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIA-GEWFNINSPKQLSY 511 Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L + T+T VL + + RM Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +G LQ P R H Q T +SDP+ Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R + G L+ AD + IE R+LA ++ ++ + AF+ D++ T Sbjct: 601 IPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F V A VT + R+ K + + Y +A ++ A + Sbjct: 661 AEVFGVDIADVTPEMRSQAKAVNFGIVYGISDY---GLARDIKISRKEAAEFIN------ 711 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + R ++ L + + Sbjct: 712 --------------------------------------KYFERYPKVKEYLDNTVKFARD 733 Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 NG + + ++R + + R+L R +N+ Sbjct: 734 NGFVLTLFNRKRYIKDIKST------------NRNL---RGYAERIAMNSP--------- 769 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP-DTDEFNAS 645 +Q + DI+ M+ + I+L VHDE++ E P + + Sbjct: 770 ---------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKE 820 Query: 646 MLYHLMTSNPSWAKGLPLKAE 666 ++ M + A +PL E Sbjct: 821 IVKREMENAV--ALKVPLVVE 839 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 230 bits (585), Expect = 1e-57, Method: Composition-based stats. Identities = 95/641 (14%), Positives = 187/641 (29%), Gaps = 159/641 (24%) Query: 46 DCVHDPVMPQVLKEAL----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 D + + + L EN + HN +++ VL I + + ++++ Sbjct: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSY 494 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 + + ++S + K D+ E+ Sbjct: 495 VLDSGRS------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS------DSQVQEHA 542 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQI 210 + V +++ L P E +L ++ + + G +D L ++ Sbjct: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSS 265 + L++ + L+ G + ++L LF + T+T T Q + Sbjct: 602 ISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 N P + R S+ P Sbjct: 661 NCGDNPIIKNILEWRQL-------------------------------SKIKSTYADSLP 689 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVAD 380 R R H T + +P+ I + +R I+ KKL+ AD Sbjct: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +A + FE D++ A F V +V+ R K + ++ Sbjct: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y ++A+ + + A + Sbjct: 810 YGISPF---RLATQLRIPRSEAADYI---------------------------------- 832 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 +R + H + + N + Q + I R+ + K N+ Sbjct: 833 ---KRYFHRFPGIHEYIEKTKNFVRQN-----GYVETIFGRRIHYDEINSPKSSIRNI-- 882 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 N R+ +N +Q + DI M++ K+ Sbjct: 883 --------------NERAAINAP------------------IQGSAADITRRAMISVHKS 910 Query: 621 GYD------IVLTVHDEIVCETPDTDEFNASM-LYHLMTSN 654 D ++L +HDE+V E P+ + AS + H M Sbjct: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 >gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] Length = 870 Score = 230 bits (585), Expect = 1e-57, Method: Composition-based stats. Identities = 74/500 (14%), Positives = 155/500 (31%), Gaps = 129/500 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E L + + G V+ + + + +L++E+ + G + ++L Sbjct: 474 EMPLLFTLFAMEQAGVRVEAEALRLYGEQLGTKIVELEKEIYAQA-GEAFNINSPKQLGV 532 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L T+T KL P+ ++ R + + L + Sbjct: 533 ILFEKLRLPHGKKTKTGYSTAADVLDKLAPEYPVVEKILEYRQLTKLKSTYA-DGLANYI 591 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +DGR+ H + +Q IT +++P+ Sbjct: 592 CADGRI-------------------------------HGKFNQTITATGRISSTEPNLQN 620 Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I + +R I EG V AD + IE R+LA +G+Q + A+ +D++ T Sbjct: 621 IPVRMELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITA 680 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 ++ F+ +VT+ QR K + + Y + + + + + Sbjct: 681 SQVFHTPFDEVTELQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEASEYI------- 730 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + + + ++ ++ Sbjct: 731 ----------------------------------DRYFETYPGIKKFLDDTVAHAKEM-- 754 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + +RR VP + N + R +N Sbjct: 755 GYVVTLFGRRRPVPEL---ASSNFMQRSF------------GERVAMNAP---------- 789 Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASM 646 +Q + D++ M+ K +VL VHDE++ E + + E + Sbjct: 790 --------IQGTAADVMKIAMIGVHRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKI 841 Query: 647 LYHLMTSNPSWAKGLPLKAE 666 L M +PL+ + Sbjct: 842 LKEQMEQAAQ--LDVPLEVD 859 >gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 936 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 93/639 (14%), Positives = 191/639 (29%), Gaps = 142/639 (22%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110 + +L+ LEN + V + F ++LK +I + ++L L Sbjct: 406 EEILSILQPTLENEKIKKVGQHLKFSYSILKRY---NINLAGMAFDVILELYI-----LY 457 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + ++ ++ F K ++ + N + + +L Y + Sbjct: 458 GTANYHDIKNFLDKDTFNVVTNFKKN--YDNYNENNILSDLQNIQLQSLYAAKFIKSLFN 515 Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + L P E L + I + G +D L +T +D L+ Sbjct: 516 LHHTLWPKIEANNKLKKIFEEVEMPLISILSRIENYGVLIDKKLLNTHAVELDYRLHALE 575 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 E L G + ++L+ L+ + L + T Sbjct: 576 LEAYQL-VGTPFNLASTKQLQEILYNQQKLPILKKTPKGAPSTNEEV------------- 621 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 + K + R LQ+ S+ + +R H Sbjct: 622 ----LKKLSKKYSMP----------RIILQYRALSKLQSTYINKLIAMINKKSNRVHTSY 667 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q T ++ P+ I +R IA + +V AD + IE R++A ++ Sbjct: 668 NQTRTSTGRLSSTSPNLQNIPNRNYDGRKIRQAFIAPKNFLIVAADYSQIELRIMAHLSQ 727 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + F + +D++ T + F A VT +QR K + L Y A +A Sbjct: 728 DIELINDFLSEKDIHTATASEIFVTALHLVTDEQRQRAKTINFGLIYGMSAF---GLARQ 784 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + ++ + ++ Sbjct: 785 LSVTCKEA-----------------------------------------QKYVDRYFNRY 803 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 V + + + + + + +R +P +Y + + G Sbjct: 804 PGVMKYMQHIREHANKY--GYVSTLDGRRLYLPDIYSAN---------------ILQKKG 846 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628 R+ +N Q + DI+ + M++ I++ V Sbjct: 847 AERAAINAPM------------------QGSAADIIKKAMISIDNWLQKDEIPARIIMQV 888 Query: 629 HDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E D + + LM + +PLK + Sbjct: 889 HDELVFEVHNDIVDPVVKKIKKLMEEC--FIMDVPLKVD 925 >gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] Length = 912 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 94/522 (18%), Positives = 162/522 (31%), Gaps = 129/522 (24%) Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + + L+ E L + + G VD H L Q R Sbjct: 491 DLAAALDTELADIEATGLLADMELPLLEVLANLESTGIAVDTTHLHDL-QSAFAARVAEA 549 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 E G + ++L+ LF E + T+T + + L + F Sbjct: 550 AEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTTDADALQSLFEKTQHPFLE 609 Query: 280 RMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + R A + ++ L++ + DGR+ T Sbjct: 610 HLLEHRDATRLKVTVDGLLKTVAEDGRIHTT----------------------------- 640 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLA 390 +Q + +++P+ I +R + EG L+ AD + IE R++A Sbjct: 641 --FNQTVAATGRLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIEMRIMA 698 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++G+ ++AF TGEDL+ +R+F V +VT + R K M L Y A Sbjct: 699 HLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAF---G 755 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A+ ++ ++ Sbjct: 756 LAAQLKISTEEA--------------------------------------------RQQM 771 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 +R + + LH+ EQ + G RR LP Sbjct: 772 DAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRY---------------LP------- 809 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624 LN+ RQ RE L I Q + DI+ M++ +A + Sbjct: 810 --------DLNSDNRQ-RREVAERAALNAPI-QGTAADIIKVAMIDVQRALREAGLASRM 859 Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 +L VHDE+V E + L M + +PL+ Sbjct: 860 LLQVHDELVLEVAAGERERVEQLVREKMAAAID--LSVPLEV 899 >gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] Length = 885 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 98/651 (15%), Positives = 203/651 (31%), Gaps = 135/651 (20%) Query: 34 AFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F D W D + + LK+ LE+ V N+ + L L I + Sbjct: 341 GFVIGDGT--TWLVSRDAELLKQAPLKKLLESPAVAKNVFNAKAQIVGLHR---LGIDLR 395 Query: 92 RWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 L+LA ++ AL+ ++ +E+ + K + D+ Sbjct: 396 NVDFDLLLASYLLNTNDNSNDLGQVALEHDYHEVATDEEVYGKGAKRAIPD--DDQTFYT 453 Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 H + + + ++ + E L + + G V+ + Sbjct: 454 HLAQKARAINDLRDPLFKKLDDNQQTPLYTEIEVPLTRVLAAMEITGIKVNSQTLKDMGS 513 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269 + ++ ++ + G + ++L LF + L + T+T + +KL Sbjct: 514 KLTERLADIEDQIYA-AAGEEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKL 572 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 QA V + LQ+ ++ Sbjct: 573 ADQAPIVED----------------------------ILQYRQIAKLQSTYITGLLKVIH 604 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAG 383 + H Q +T + DP+ I +R + S EG ++ +D + Sbjct: 605 SSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDYSQ 664 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQ 442 +E RVLA + G++ + F+ GED++ +T R F++ ++ ++ R K + + Y Sbjct: 665 VELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNFGIVYG 724 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 +A ++ + ++ + +E+ + + EH + Sbjct: 725 ISDY---GLAQRIHVSRSQAHEFIQ--NYFKEFPGVKKYIDDTIAFAREHGYVE------ 773 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 I +RR +P ++ K Sbjct: 774 -----------------------------------TITHRRRYLPDIHAKSFSR------ 792 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---- 618 RS R+ +NT +Q + DI+ M+ Sbjct: 793 ---RSFA------ERTAMNTP------------------IQGSAADIIKIAMIRMKEEIK 825 Query: 619 --KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + ++L +HDE+V E P + ++ +M S +PLK E Sbjct: 826 QRQLQARMLLQIHDELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVE 874 >gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2] gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2] Length = 1008 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 106/638 (16%), Positives = 197/638 (30%), Gaps = 144/638 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 VL++ +E+ V + F +L I + +++ AL A Sbjct: 480 DVLRKLMESEAVLKSGLDIKFISVMLAQH---KITLRTTDDVQLMS------YALDAGRG 530 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIF- 172 A + S ++ +A RNK + + EY + ++ Sbjct: 531 AHDIESLA----QKWLAHAAIKHGDVIGSGRNKLSLDQVTIERATEYGAETADIIIRLWL 586 Query: 173 --------KRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 +R+ + E+ L + + RG +D + L+ ++L+ E+ Sbjct: 587 LMKARLISERMNNVYESLERPLIGVLARMERRGIMIDRQVLSRLSGDFAQTASRLEDEIR 646 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G + ++L +F + GL T+T +S + + VF Sbjct: 647 KIA-GEDINPGSPKQLGDVIFGKMGLPGGQKTKTGAWSTSASILEDLAEEGHVFP----- 700 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R L + S+ P P+ R H Sbjct: 701 ---------------------RKILDWRQVSKLKSTYTDALPNYVNPQTQRVHTTYALAA 739 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T +++P+ I +R IA +G KLV AD + IE R+LA +A Sbjct: 740 TTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAEKGHKLVSADYSQIELRLLAEIADIPVL 799 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF D++ T + F V + + R K + + Y A +A+ G+ Sbjct: 800 KQAFHDKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYGISAF---GLANQLGIP 856 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 +K + +E +M + + R+ H V Sbjct: 857 REEAGAYIK-----KYFERFPGIRAYM------------------DATRDFCRE-HGYVE 892 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 L+ GR Y D+ Sbjct: 893 TLF-------------------------------------------GRKCHYPDIK---- 905 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 N + R +L Q + DI+ M+ A ++L VHDE+ Sbjct: 906 ASNASLRAFNERAAINARL-----QGTAADIIRRAMIRMEDALAEKKLAARMLLQVHDEL 960 Query: 633 VCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEG 667 V E PD++ ++ +M + P+ +PL + Sbjct: 961 VFEVPDSEVGDTIPVIQEVMENAAFPAARLSVPLHVDA 998 >gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 895 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 81/514 (15%), Positives = 161/514 (31%), Gaps = 131/514 (25%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + +RL E L ++ + G+ V+ Q + ++ QE+ L G Sbjct: 486 MQEMERL--YQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLA-G 542 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL T+T VL + ++ + R+ A Sbjct: 543 TSFNLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAKL 602 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + + R H Q +T Sbjct: 603 QSTY-VEGLLKVIRKE------------------------------TGRVHTRFHQTLTA 631 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I +R + + + AD + IE R+LA ++G++ + Sbjct: 632 TGRLSSSEPNLQNIPIRLEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 691 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF D++ T A F V P QVT R K + + Y +A + Sbjct: 692 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDF---GLAQNLNIPQ 748 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +++ + Sbjct: 749 KEAKRFIES--------------------------------------------YFEKFPG 764 Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + +Q E G + +RR +P ++ + + RS R+ Sbjct: 765 VKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQ---------LRSFA------ERT 809 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 +NT +Q + D++ M+ +A ++L VHDE+ Sbjct: 810 AMNTP------------------IQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDEL 851 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + E P + +L N + +PLK + Sbjct: 852 IFECPKDELAALEVLVRDNMEN-AMTLSVPLKVD 884 >gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] Length = 858 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 85/505 (16%), Positives = 167/505 (33%), Gaps = 126/505 (24%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 L E L + ++ G + + +++ + L Q++ S G++ + Sbjct: 456 NVLSLYREIEMPLTRVLFSMEQEGISIQESFLDEYGALLNEKLETLAQQIYSHA-GMIFN 514 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF E L +T VL + P + R + S+ + ++ Sbjct: 515 INSPKQLANVLFDELNLSSGGKKRSTSADVLEKLRGKHPIVDDILEYR-KISKVSSTYID 573 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L + + SD ++ H +Q +T +S Sbjct: 574 GLKKHIRSDQKI-------------------------------HTSFNQTMTQTGRLSSS 602 Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I + +R +A EG L+ AD + IE R+LA MA E +KAF G D Sbjct: 603 EPNLQNISIRDELGKEIRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFNEGLD 662 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T FN +P +V + +R I K + + Y ++S + +K Sbjct: 663 IHTKTATLIFNCSPEEVDEHKRRIAKTVNFGIVYGQTEF---GLSSQLNITRKEAGEFMK 719 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 E + + + + E+ + Sbjct: 720 M--YFESYPKIHEYMNQLIDFCKENGYVE------------------------------- 746 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + +RR++P + DKN + R+ +N Sbjct: 747 ----------TLFHRRREIPEI---NDKNFMTREF------------GKRAAMNAP---- 777 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD- 640 +Q + D++ M+ +A ++L +HDE++ PD + Sbjct: 778 --------------IQGSAADLIKIAMLKMDQALKDANVNSKMLLQIHDELIFLVPDEEL 823 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKA 665 + ++ M S +PLKA Sbjct: 824 DLMQKLVKETMESAME--LKVPLKA 846 >gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108] gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108] Length = 850 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 86/500 (17%), Positives = 155/500 (31%), Gaps = 128/500 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E+ L + + G+ VD + ++ + KL+ ++ + G + ++L Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALLQYTKEIENKILKLETQIYQIA-GEWFNINSPKQLSY 511 Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L + T+T VL + + RM Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +G LQ P R H Q T +SDP+ Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R + EG L+ AD + IE R+LA ++ ++ + AF+ D++ T Sbjct: 601 IPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNIDIHSQTA 660 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F V A VT + R+ K + + Y +A ++ A + Sbjct: 661 AEVFGVDIADVTPEMRSQAKAVNFGIVYGISDY---GLARDIKISRKEAAEFIN------ 711 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 E +P+ + + + + R+ + V L+N Sbjct: 712 ----------KYFERYPK-------VKEYLDNIVRFARE-NGYVLTLFN----------- 742 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 ++R V + N RSY R Sbjct: 743 --------RKRYVKDIKSANR--------------------NARSY-------AERIAMN 767 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASML 647 +Q + DI+ M+ + I+L VHDE++ E P ++ + Sbjct: 768 SP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRI 821 Query: 648 YHL-MTSNPSWAKGLPLKAE 666 M + A +PL E Sbjct: 822 VKREMENAV--ALKVPLVVE 839 >gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1] Length = 912 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 104/642 (16%), Positives = 178/642 (27%), Gaps = 143/642 (22%) Query: 33 FAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A P +D D + + + + + V H++ V++ + Sbjct: 368 IALAAASGPAVCFDPSAVDEPDERAFADWIADPERPKVMHDAK---RVMRVFDEQGWAVA 424 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 LA P +AL + G+EL + Sbjct: 425 GAAMDTALAAYLVKPGRRSFALDALSVEYL----GRELSPAAAAESGQLAFGADEQAEQD 480 Query: 152 EAWRLFG-----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 G + L E + L + G D Sbjct: 481 ALMIQARTILDLGEAFGRRLAEVGAVELLR---DVELPISALLARMEKAGIAADRDWLDR 537 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 ++Q + +E G + ++L+ F E GL +T + Sbjct: 538 MDQRFAGAVQQAVKEAHD-AVGHEFNLGSPKQLQEVFFGELGLPKTKKIKTGYTTDADAL 596 Query: 267 KKLTPQAIQ---VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 L Q V R R + L++A+ GR+ T Sbjct: 597 AWLATQTDHELPVIMLRHREQARLRSTVEGLIKAIAPGGRIHTT---------------- 640 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEG-KKLV 377 +Q + ++DP+ + +R + EG + L+ Sbjct: 641 ---------------FNQTVAATGRLSSTDPNLQNVHVRTEEGRAIRRGFVVGEGFESLL 685 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RV+A ++ ++ ++AF +GEDL+ T ++ F VA ++V + R K M Sbjct: 686 TADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMSY 745 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 L Y A + G+ + L+ T Sbjct: 746 GLAYGLSAFGLSQ---QLGITPDEARKLMDTFF--------------------------- 775 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 R + + L + ++ G RR Sbjct: 776 -----------------ERFGGVRDYLQRVVDEARATGYTETMLGRRRY----------- 807 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 LP LN+ RQ RE L I Q + DI+ M+ Sbjct: 808 ----LP---------------DLNSDNRQ-RREMAERMALNAPI-QGTAADIVKIAMLRV 846 Query: 618 ------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MT 652 K ++L VHDEIV E + L M Sbjct: 847 DEALTKEKLSSRMLLQVHDEIVVEVAPGEREQVEALVRREMA 888 >gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] Length = 878 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 95/642 (14%), Positives = 194/642 (30%), Gaps = 180/642 (28%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 ++LK EN + V H+S VL +I +A PS + Sbjct: 376 EILKNLFENEKIKKVCHDSKKVYVVLNKH---NITAKNIAFDTKIAAYLLQPSKSDYM-- 430 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +++ E + E + I+++ Sbjct: 431 --------LKDLIEEMLLLSLKEYDNIKINETYYIKD-------------------IYEK 463 Query: 175 LEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE L + E L + ++ G+ VD + + E L++E+ Sbjct: 464 LEKDIKESNMEELLYTVELPLVEVLASMECAGFRVDENRLTEIGEKFKKEIETLEKEIHE 523 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRM 281 L + + ++L LF + L + T+T VL K P ++ R Sbjct: 524 LAD-EEFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKIIEYRQ 582 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L ++ DG++ H +Q Sbjct: 583 ITKLDSTY-VEGLKNVIDGDGKI-------------------------------HSSFNQ 610 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGE 395 +T +++P+ I +R + + + + AD + IE R+L+ +A + Sbjct: 611 TVTTTGRLSSTEPNLQNIPIKHEMGREIRKVFVPNNNESVIFSADYSQIELRILSHIADD 670 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF+ +D++ T + F V +VT R+ K + + Y GA + Sbjct: 671 EKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLS---KDI 727 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ + T + + + + + A D F+ Sbjct: 728 NVSRKEAKEYIDT--YFSRYPNVKKYIDEIIS----KAEVDGFV---------------- 765 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 I ++R +P + R+ + R G Sbjct: 766 ---------------------TTILNRKRYIPEI--------------QSRNKIVRGFGE 790 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629 R +NT +Q + DI+ M+ ++L VH Sbjct: 791 -RLAMNTP------------------IQGSAADIIKLAMVEVYNELKNRNLKSTLILQVH 831 Query: 630 DEIVC-----ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 DE++ E + + ++M +PL+A+ Sbjct: 832 DELILNVYKDELEEVKNMVVDKMENVMKLL------VPLEAD 867 >gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5] gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5] Length = 871 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 87/619 (14%), Positives = 183/619 (29%), Gaps = 167/619 (26%) Query: 73 SYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPS----ALKAVG-EALKLSSQKMEEG 126 + F+ LK + C + +A P + V E L L ++E Sbjct: 384 AMFD---LKKYLPHVKAPDQEKCFDVTVAAYLLNPLKNNYDYEDVAREQLGLM---IDEK 437 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK----GDVTVTREIFKRLEPLSSKE 182 +++ + C + + + D + + E Sbjct: 438 ADVMTKAC-------------------YEAYTAFAAVKPLRD---KMQAEGMYHLFTDIE 475 Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242 L + + G V+ + + +L++E+ + G + ++L Sbjct: 476 MPLVFTLFDMEQAGIQVEAEALKFYGEQLGGRIVELEKEIYEMA-GETFNINSPKQLGVV 534 Query: 243 LFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF L T+T T VL P ++ R + Sbjct: 535 LFDHMQLPNGKKTKTGYSTAADVLDKLAPDYPVVEKILEYRQLTKLKSTY---------- 584 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DG ++GA R H + +Q IT +++P+ I Sbjct: 585 ADG----LAVYIGA------------------DGRIHGKFNQTITATGRISSTEPNLQNI 622 Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 + +R + EG + AD + IE R+LA +G++ ++A++ D++ T + Sbjct: 623 PVRMELGRLIRKVFVPKEGYVFIDADYSQIELRILAHCSGDEQLIQAYKDARDIHRMTAS 682 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F+ +VT+ QR K + + Y + + + A ++ Sbjct: 683 QVFHTPFEEVTELQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAQYIE------- 732 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + + + ++ ++ E Sbjct: 733 ----------------------------------NYFETYPGIKRFLDDTVAHAKE--EG 756 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 + +RR VP + K N + R +N Sbjct: 757 YVVTLFGRRRPVPEL---KSSNFMQRNF------------GERVAMNAP----------- 790 Query: 595 GKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA-SML 647 +Q + DI+ M+ + ++L VHDE++ E + +L Sbjct: 791 -------IQGSAADIMKIAMIGVNRELKEKGLRSRMILQVHDELLIEAHREEIGEVQEIL 843 Query: 648 YHLMTSNPSWAKGLPLKAE 666 M +PL + Sbjct: 844 KRQMEQAAD--LDVPLIVD 860 >gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] Length = 871 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 83/490 (16%), Positives = 152/490 (31%), Gaps = 131/490 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G V+ + + +L++E+ G + ++L Sbjct: 473 DIEMPLVFTLFDMEQNGIRVEADALKQYGDQLAGKIAELEKEIYEEA-GETFNINSPKQL 531 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF L T+T T VL P ++ R + + L Sbjct: 532 GVVLFENMKLPGGRKTKTGYSTAADVLEKLAPEHPVVAKILEYRQYTKLKSTYA-DGLAN 590 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DG R H + +Q IT +++P+ Sbjct: 591 YIQDDG-------------------------------RIHGKFNQTITATGRISSTEPNL 619 Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I + +R I EG + V AD + IE RVLA +G++ ++A++ D++ Sbjct: 620 QNIPVRMELGRLIRKVFIPEEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRI 679 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T ++ F++ +VT QR K + + Y + + + A + Sbjct: 680 TASQVFHIPFDEVTPQQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAKYID---- 732 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + + L A Sbjct: 733 -------------------------------------DYFATYPGIKTF---LDHAVTHA 752 Query: 532 IENGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 E G + + +RR VP + S + + R G R +N+ Sbjct: 753 KEEGYVVTLFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNSP------- 790 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET--PDTDEF 642 +Q + DI+ M+ K +VL VHDE++ E P+ DE Sbjct: 791 -----------IQGAAADIIKIAMIRVNQRLKDQKMKSRLVLQVHDELLIEAYEPELDEV 839 Query: 643 NASMLYHLMT 652 ++L M Sbjct: 840 Q-NILKEEME 848 >gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071] gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071] Length = 914 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 111/616 (18%), Positives = 182/616 (29%), Gaps = 145/616 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + + V H++ +++ + + L+ P +AL L Sbjct: 400 LGDPERPKVMHDAK---GLMRVFGEHGMTVAGVAMDTALSAYLVKPGRRTFALDALSLEY 456 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 G+EL+ + R + + + + RL Sbjct: 457 L----GRELV-----PAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGA 507 Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L+ E L + G D A + + + +E + G + Sbjct: 508 EGLLTDIELPTSALLARMERAGIAADRAHLEEMERQFAGAVEQAVREAHA-AVGHEFNLG 566 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKL 291 ++L+ LF E L T+T S L Q V R R + Sbjct: 567 SPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTV 626 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++++ DGR+ T +Q + + Sbjct: 627 EGLIKSIAPDGRIHTT-------------------------------FNQTVAATGRLSS 655 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +DP+ I +R + EG + L+ AD + IE RV+A ++ ++ + AF +G Sbjct: 656 TDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSG 715 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ T FNV PA V + R K M L Y A + G+ L Sbjct: 716 EDLHRTVAGYVFNVEPAAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEAGEARAL 772 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + T R + + LH Sbjct: 773 MDT--------------------------------------------YFERFGGVRDYLH 788 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + E+ G RR LP LN+ R Sbjct: 789 RVVEEARATGYTATMLGRRRY---------------LP---------------DLNSDNR 818 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE-TPD 638 Q RE L I Q + DI+ M+ +A ++L VHDEIV E P Sbjct: 819 Q-RREAAERMALNAPI-QGTAADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELAPG 876 Query: 639 TDEFNASMLYHLMTSN 654 E +L M + Sbjct: 877 EREPVEEILRREMAAA 892 >gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4] Length = 901 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 86/506 (16%), Positives = 157/506 (31%), Gaps = 115/506 (22%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V + L+ + E L Y + +G +D + V +L+Q + S Sbjct: 488 VIAEIKEEGMLDIYENIEMPLVYTLFDMELQGIAMDKEALAEYGSRLSVRINELEQSIYS 547 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF + G+ T+T T VL P + R Sbjct: 548 QA-GEEFNINSPKQLGVILFEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQ 606 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 A + + L ++ DGR+R T Q Sbjct: 607 LAKLKSTYA-DGLAACVDEDGRIRSTFM-------------------------------Q 634 Query: 342 IITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 +T +++P+ I + +R + + AD + IE RVLA M+G++ Sbjct: 635 TVTATGRISSTEPNLQNIPIRMELGREIRKVFYPKKDCVFLDADYSQIELRVLAHMSGDE 694 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF+ G+D++ +T + FN +VT QR K + + Y A +A G Sbjct: 695 NLIDAFKAGQDIHRSTASLVFNTPFDEVTDLQRRRAKAVNFGIVYGISAF---GLAKDIG 751 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + A E HA E ++ T Sbjct: 752 VGRKEAQEYIDNYFV------AYPKMHEFLEGLKSHAKEKGYVTT--------------- 790 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + +RR +P + N + Sbjct: 791 ----------------------MYGRRRPIPEL---ASSNFMTRQF------------GE 813 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636 R +N+ + G + I A+ + + ++L VHDE++ ET Sbjct: 814 RVAMNSPIQ---------GTAADIIKIAM---VNVHDRLLKEGLKSKLLLQVHDELLVET 861 Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGL 661 +++ + M + A L Sbjct: 862 LESERPQVEKLIAEEMENAAKLAVDL 887 >gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28] gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28] Length = 890 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 89/547 (16%), Positives = 185/547 (33%), Gaps = 76/547 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + K L N ++ ++ R ++ + I I L++A P+ Sbjct: 369 EAFKAWLANGEMRKHTFDAK--RAIVALKW-KGIDIQGIDFDLLIAAYLLDPADTDKDFR 425 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 426 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 474 Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE L EQ L + + +G VD + + + +++QE+ Sbjct: 475 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 534 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 535 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 593 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 594 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 622 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 623 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIIYAADYSQIELRVLAHIAND 682 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 683 KGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 739 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R ++ + S Sbjct: 740 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-RRYIPEITS 792 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVG 574 R L + + T G A K + + +++ L+L L++ Sbjct: 793 RNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQVHDELIFEAPK 852 Query: 575 NNRSYLN 581 L Sbjct: 853 EEIEKLE 859 >gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] Length = 878 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 101/655 (15%), Positives = 194/655 (29%), Gaps = 139/655 (21%) Query: 19 CGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMPQVLKEALENTDVTIVAHNSYF 75 G+ +AE+ ++ A + + V + L V + F Sbjct: 323 VGVQIFAEEGDLLGVAIAVSREEIYYVEVSGFVSGEYLADKL------AQVAKQTQIAAF 376 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 VL N++ + V A P LK + + GKE + + Sbjct: 377 HVKVLLKYVNVET-WTQTFGAEV-AAYLLNP---------LKTAYDYEDIGKEYLGQIFP 425 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQEL 185 G +K E V + LE E L Sbjct: 426 GRQEVVGKKGDKDALAEKPEEMKRLGCFMAYVALAVKAPLEEALREAGMERIFQEIEMPL 485 Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245 + ++ G V+ + + V +L++++ G + ++L LF Sbjct: 486 VFTLNSMEKEGIQVEGEALRVYGEQLQVRIGELEKQICGQA-GEDFNINSPKQLGAILFE 544 Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 + L T+T KL P+ V R Sbjct: 545 KMKLPGGKKTKTGYSTAADVLDKLAPKHPIV----------------------------R 576 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----I 360 L++ ++ + R H Q IT +++P+ I + Sbjct: 577 DILEYRQLTKLKSTYADGL-AGYIGEDGRIHSTFHQTITATGRISSTEPNLQNIPIRMEL 635 Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420 +R + EG + AD + IE RVLA M+G++ ++A+ +D++ T ++ F+ Sbjct: 636 GRLIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQVFHTP 695 Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480 +VT QR K + + Y + + + A ++ + + Sbjct: 696 FEEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAADYIE--RYFSTYPKIKG 750 Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 F + + ED ++ T R Sbjct: 751 FL----DGLVKKGKEDGYVTTMFGR----------------------------------- 771 Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600 RR +P + K N + R +N+ + G + Sbjct: 772 --RRPIPEL---KSSNFMQRSF------------GERIAMNSPIQ---------GTAADI 805 Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654 I A++R + ++L VHDE++ ET + + E + +L M Sbjct: 806 IKIAMNR---VYSRLRQEGLRSKLILQVHDELLIETWEEELEQVSEILLEEMRQA 857 >gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] Length = 886 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 110/664 (16%), Positives = 199/664 (29%), Gaps = 144/664 (21%) Query: 24 YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 Y E L F D L D + LK+ LE+ V N+ + L Sbjct: 334 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVERDVFNAKAQLVGLHR- 389 Query: 84 FNLDIPIHRWICTLVLARSNGLPS----ALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 L + + L+LA S L + A + +E E+ + K Sbjct: 390 --LGVDLAGVDFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDE--EVYGKGAK--RA 443 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 D H K + ++L E+ L + + G V Sbjct: 444 IPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHV 503 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D A + + +L+Q + G + ++L LF + L + T+T Sbjct: 504 DAATLKEMGSKLVEREAELEQAIYQEA-GEEFNINSPKQLGVILFEKMKLPVIKKTKTGY 562 Query: 260 QR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316 VL P + R S+ + L++ ++ D Sbjct: 563 STAVDVLEKLADRAPIVQDILAYRQ-ISKLQSTYITGLLKVIHQDD-------------- 607 Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS 371 + H Q +T + DP+ I +R S Sbjct: 608 ----------------QKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPS 651 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQR 429 G K+ +D + +E RVLA + G++ F G+D++ T R F++ + +VT + R Sbjct: 652 APGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMR 711 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y +A ++ +++ + + Sbjct: 712 RQAKAVNFGIVYGISDY---GLAQNIHVSRPQAHEFIQS------YFKEFPGVEKYVHDI 762 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 E A + ++ T + +RR +P + Sbjct: 763 VELAKQQGYVET-------------------------------------LTHRRRYLPEI 785 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 + K RS R +NT +Q + DI Sbjct: 786 HAKSFTQ---------RSFA------ERMAMNTP------------------IQGSAADI 812 Query: 610 LAEGMMNATKAG------YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLP 662 + M+ KA ++L +HDE+V E P + ++ +M S +P Sbjct: 813 IKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIAILEELVPSIMDSAVK--LDVP 870 Query: 663 LKAE 666 LK E Sbjct: 871 LKVE 874 >gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3] gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3] Length = 869 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 101/585 (17%), Positives = 187/585 (31%), Gaps = 76/585 (12%) Query: 28 VCVILFAFGFD-DHPVELWDC--VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 + L D V D D V+ L++ + D +N + LK Sbjct: 324 PSLTLMGVALACDEQVYYVDIEHAQDDVITP-LRDFFKRKDTEFYGYNIKRDNHALK--- 379 Query: 85 NLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 N I IH L LA G + + + L + GKE Sbjct: 380 NAGIHIHNITLDLALAEHLINGGAKISYQTLLVDHGLVESAGKYGKEWGQL--------S 431 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------PLSSKEQELWYLDQTINDR 195 L P + FGE+ + + + + L+ + E L + TI Sbjct: 432 LPILKSPAKPAEY--FGEFVSHLPKIKKSLLEELKVKGLEDLFFNMEMPLEKVLFTIERN 489 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +DV L + + E L ++ ++ G + + ++L L+ + GL D Sbjct: 490 GMPLDVEDLQELERTLSEELAILTDDIYTVA-GTSFNIKSPKQLSDVLYNKLGLTPIDKA 548 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL++ ++ F + Sbjct: 549 RSTKAEVLAALLGEHEIVEKILA-------------------------------FRAIEK 577 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI- 369 P Q P SR H +Q+ T DP+ I +R Sbjct: 578 LLSTYVKALPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCD 637 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 + + AD + IE R LA ++ ++ AF + ED++ T ++ F+V +VTK QR Sbjct: 638 TRQNNYFLSADYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQR 697 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y A ++ ++++ L+ + + F Sbjct: 698 MQAKTVNFGIIYGQQAY---GLSKILKISVSEAQKLIDA--YFDRYPAVARFINETINEA 752 Query: 490 PEHAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 E+ +G ER+ W + +SR + A I+ A + + Sbjct: 753 CENLRVKTLLGR--ERIIDNWTEFSNSRAAS----GRLAVNTRIQGSAAELIKLAMLQLA 806 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 ++K K ++L L++ + + T R + Sbjct: 807 AALEKRKLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAMI 851 >gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18] gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18] Length = 890 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 89/547 (16%), Positives = 185/547 (33%), Gaps = 76/547 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + K L N ++ ++ R ++ + I I L++A P+ Sbjct: 369 EAFKAWLANGEMRKHTFDAK--RAIVALKW-KGIDIQGIDFDLLIAAYLLDPADTDKDFR 425 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 426 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 474 Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE L EQ L + + +G VD + + + +++QE+ Sbjct: 475 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 534 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 535 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 593 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 594 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 622 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 623 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 682 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 683 KGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 739 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R ++ + S Sbjct: 740 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-RRYIPEITS 792 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVG 574 R L + + T G A K + + +++ L+L L++ Sbjct: 793 RNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQVHDELIFEAPK 852 Query: 575 NNRSYLN 581 L Sbjct: 853 EEIEKLE 859 >gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] Length = 937 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 94/511 (18%), Positives = 158/511 (30%), Gaps = 135/511 (26%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVA----LAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L E L L + G VDV L D + + T G+ + Sbjct: 526 LQELEIPLSRLLARMELTGIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNL 585 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---K 290 ++L+ LF + T+T + S + L Q F + A R A Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHRDATKLRQT 645 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L+E + DGR+ T Q Sbjct: 646 VEGLLETVAPDGRIHTT-------------------------------YSQTAAATGRLS 674 Query: 351 TSDPDPLQII-----SDCVRSCVIA----SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + P+ I +R +A E L+ AD + IE R++A ++ ++ ++A Sbjct: 675 SLHPNLQNIPVRTEAGRRIRGVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQA 734 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F GEDL+ ++ F V P +VT +QRA K M L Y + ++ ++++ Sbjct: 735 FREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSF---GLSKQLKISVDE 791 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 L+K R + Sbjct: 792 ARGLMKGYF--------------------------------------------DRFGGVR 807 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + L Q ++G RR LP L+ Sbjct: 808 DYLRDVVAQARQDGYTSTIEGRRRY---------------LP---------------DLS 837 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE 635 + RQL R+ L I Q + DI+ M++ ++L VHDE++ E Sbjct: 838 SDNRQL-RDMAERAALNAPI-QGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILE 895 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 P + E + ++L M +PL Sbjct: 896 VPAAELEQSTALLKERMGRAAE--LSVPLDV 924 >gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3] gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3] Length = 890 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 89/547 (16%), Positives = 185/547 (33%), Gaps = 76/547 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + K L N ++ ++ R ++ + I I L++A P+ Sbjct: 369 EAFKAWLANGEMRKHTFDAK--RAIVALKW-KGIDIQGIDFDLLIAAYLLDPADTDKDFR 425 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 426 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 474 Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE L EQ L + + +G VD + + + +++QE+ Sbjct: 475 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 534 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 535 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 593 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 594 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 622 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 623 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 682 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 683 KGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 739 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ T R ++ + S Sbjct: 740 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYVATLLNR-RRYIPEITS 792 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVG 574 R L + + T G A K + + +++ L+L L++ Sbjct: 793 RNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQVHDELIFEAPK 852 Query: 575 NNRSYLN 581 L Sbjct: 853 EEIEKLE 859 >gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115] Length = 926 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 100/531 (18%), Positives = 161/531 (30%), Gaps = 137/531 (25%) Query: 160 YCKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 G VT + + L P + E+ L + + RG +D L Sbjct: 498 DAAGRAAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGA 557 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSS 265 L+ E+ G S R +L+T L+ E GL T+ T +R L Sbjct: 558 AAARLAALETEIHQH-VGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEP 616 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P V R +LRGT P Sbjct: 617 LRDEHPVIPLVLEFREL-------------------DKLRGT------------YLDPLP 645 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 PR R H Q + +P+ I +R IA +G L+ AD Sbjct: 646 SLVNPRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEMGREIRKGFIADKGYCLISAD 705 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +A + +AF G D++ T A+ + VT QR K + + Sbjct: 706 YSQIELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVL 765 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A ++++ G++ + +A F +P Sbjct: 766 YGMSA---HRLSNELGIS----------------YVEAAGFIETYFNTYP---------- 796 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R R E Q + +T + +RR VP Sbjct: 797 --------GIRGYIDRTLEFGRT--QGYVET-------MYGRRRYVP------------- 826 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--- 617 + N R+ Y +Q + DI+ M+ Sbjct: 827 ---------------ELAATNRNVREAGERLAY-----NMPIQGTAADIIKHAMIRLDRE 866 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 G ++L VHDE++ E P+ + + L +M +PL E Sbjct: 867 LEALGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVE 915 >gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c] gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c] Length = 971 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 102/613 (16%), Positives = 176/613 (28%), Gaps = 144/613 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118 L + AH+ L L + LA LP + L+ Sbjct: 451 LADPAKPKAAHDVKGPMLALAE---LGFTLAGVTSDTALAAYLALPGQRSFDLGDLVLRY 507 Query: 119 SSQKMEEGKELIARFCKGETHECLYD---RNKPNHREA------WRLFGEYC-KGDVTVT 168 ++++ + + D EA R GE D + Sbjct: 508 LHRELKADEA-------PSDGQLTLDVEVEGVEESAEAEVDVVRARAVGELADALDGDLE 560 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 R RL L E L + + G D L E TK+ + + G Sbjct: 561 RRSAARL--LRDIELPLLTVLAGMERAGIAADAEYLADLQSQYGTEVTKVVEAAHEI-VG 617 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L+ LF E GL +T + L + Sbjct: 618 RPFNLGSPKQLQQILFEELGLPKTKKIKTGYTTDADALAWLATNSEHPL----------- 666 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L+ +R + P + R H +Q+I Sbjct: 667 ---------------IPTLLRHRDVARLKTVVESLLPM--IDDAGRIHTTFNQMIAATGR 709 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++DP+ I +R + G L+ AD + IE R++A ++G+ ++AF Sbjct: 710 LSSTDPNLQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDAGLIEAF 769 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +GEDL+ A++FN+ A+V + R K M L Y A +A+ G++ + Sbjct: 770 ASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYGLAYGLSAY---GLATQLGIHPDEA 826 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + +R + + Sbjct: 827 --------------------------------------------RDQMEAYFARFGGVRD 842 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 L +Q ++G RR LP T Sbjct: 843 FLRGVVDQARKDGYTETILGRRRY---------------LPDL----------------T 871 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636 + R+ L I Q + DI+ M+ + ++L VHDE+V E Sbjct: 872 SDNSQRRQMAERMALNAPI-QGSAADIIKIAMLGVDRGLRDAGLRSRLLLQVHDELVLEI 930 Query: 637 PDTDEFNASMLYH 649 + A L Sbjct: 931 APGERERAEALVR 943 >gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 852 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 112/632 (17%), Positives = 196/632 (31%), Gaps = 151/632 (23%) Query: 60 ALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 L + V H + VL + + + + L PS + L Sbjct: 336 LLADPAVKKGGH----DLKVLSLLLGGMKLTLQGAHDDVELLSYLLNPSRRE-----HAL 386 Query: 119 SSQKMEE-GKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRL 175 E G EL A T E R H E +G + +++ L Sbjct: 387 PDLSRERLGLELPAL---PATAEGKKGRPLVEHSAEEVAAAYGARADAARRLAPRLWEEL 443 Query: 176 EPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + E L + + +G +D A+ TL+ VD E + + +L G Sbjct: 444 EAIGLAALARDMELPLLPILARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLA-GQ 502 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +L L+ + L + +T T Q VL + P + R S+ Sbjct: 503 EFNVGSNPQLAQVLYEKLQLPILKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKL 561 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L+TL + D R H Q T Sbjct: 562 KSTYLDTLPGLVAKD-------------------------------GRIHTTYHQAATAT 590 Query: 347 PTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I + +R +A G +LV AD + +E R+LA +A + L A Sbjct: 591 GRLSSSDPNLQNIPVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDA 650 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ ED++ T A F V P +V +DQR + K + + Y +++ Sbjct: 651 FQHDEDIHSRTAAEIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLST---RLSISVEE 707 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 +++ + +R + + Sbjct: 708 ARDIIE--------------------------------------------RYFTRYAGIR 723 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 L E+ + G RR L+ L S V + + Sbjct: 724 RYLEDTVERARKTGYVETMFGRRR------------LMADLNSKNRAVAQAAERAAINM- 770 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635 +Q + D++ + M+ +A ++L VHDE++ E Sbjct: 771 -------------------PIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFE 811 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 P+ + L M+S + +PLK + Sbjct: 812 APEAEVDRVKALARQCMSSVAT--LKVPLKVD 841 >gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440] gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440] Length = 899 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 88/520 (16%), Positives = 152/520 (29%), Gaps = 129/520 (24%) Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D ++R+ + ++ E L + + G D L E Q Sbjct: 480 AIDAELSRDGEQSARLMAEVELPLMRVLAGMERTGIAADTQYLSELEAHFAAEVKAAAQG 539 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L+ LF E GL +T + + L Q + Sbjct: 540 AYE-AVGREFNLGSPKQLQEILFGELGLPKTKRIKTGYTTDADALQWLYGQNPHPVLGHL 598 Query: 282 RASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ L+++++ DGR+ T Sbjct: 599 LRHRDVAKLKTTVDGLLKSVSDDGRIHTT------------------------------- 627 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWM 392 +Q + +++P+ I +R + G + L+ AD + IE R++A + Sbjct: 628 FNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGTGYECLLTADYSQIEMRIMAHL 687 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + ++ + AF +G D + T + F V VT DQR K M L Y A + Sbjct: 688 SADEALIDAFNSGLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGLAYGLSAFGLSQ-- 745 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ L++T Sbjct: 746 -QLGVTAEEARGLMET-------------------------------------------- 760 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + + L + + +G RR LP Sbjct: 761 YFAGFGGVRDYLQEVVARARRDGYTESVLGRRRY---------------LP--------- 796 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626 L + RQ RE L I Q + DI+ MMN A ++L Sbjct: 797 ------DLVSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMMNVDAAVREAGLRSRMLL 848 Query: 627 TVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 VHDE+V E + L M +PL+ Sbjct: 849 QVHDELVFEVAPGEREALEALVRREMGGAFP--LSVPLEV 886 >gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] Length = 877 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 101/630 (16%), Positives = 195/630 (30%), Gaps = 140/630 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L E LEN + ++ L+I + ++LA P ++ V Sbjct: 358 ELIEWLENDHNNKIVFDAKKTYVAAHR---LEINLQHIDFDVMLASYIINPSRTIEDVQS 414 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +Q K IA + KG+ + D H A CK ++ + Sbjct: 415 VVSYYNQNF--VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDILSDHNQ 472 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 ++ L++ E L + + + G DV + L ++ + + KLD + + G + Sbjct: 473 MDLLNNLELPLARILADMEETGIYTDV---NDLKEMQNELQEKLDNLVSEIYEAAGESFN 529 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 530 INSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQL------- 582 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 583 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 617 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA M ++ +AF Sbjct: 618 SSIDPNLQNIPIRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFI 677 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + G+ Sbjct: 678 HGDDIHAATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKKAK 734 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A + ++ T Sbjct: 735 AFID------DYLASFPGVKQYMTDIVKDAKANGYVETLL-------------------- 768 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +RR +P + + + RS R+ +NT Sbjct: 769 -----------------HRRRYIPDITSRNF---------NLRSFA------ERTAMNTP 796 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637 +Q + DI+ M+ K ++L VHDE++ E P Sbjct: 797 ------------------IQGSAADIIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVP 838 Query: 638 DTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 ++ + S + +M + + A +PL + Sbjct: 839 KSEVQDFSEFVEEIMDNALTLA--VPLLVD 866 >gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi] gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi] Length = 909 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 104/695 (14%), Positives = 211/695 (30%), Gaps = 169/695 (24%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVL 57 + ID ET S + Y +I + F + + ++ Sbjct: 341 NYISIDTETSS--------LDTY--TAKLIGISISFKEFEGYYIPIETKGKIYIEKHYII 390 Query: 58 KEA--LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 ++ L ++ I+ N F+ +LK IP + T++ A S + A Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K K + +++I +N + + Y D +T +F Sbjct: 449 EKYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLFNIF 495 Query: 176 EPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELES 224 KE EL+ L I + G +D + + E ++ E+ Sbjct: 496 TEKL-KEDELYELMHEIEMPFNNVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK 554 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMR 282 + G+ + +++ LF + L L + + T +VL S ++ + +R Sbjct: 555 -SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIGNLIKHRRI 613 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L+E +N + +R H Q Sbjct: 614 AKLKSTYT-DNLIELINY------------------------------KTNRLHTSFIQT 642 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 T + +P+ I +R G + AD + IE +LA ++ ++ Sbjct: 643 RTATGRITSINPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDET 702 Query: 398 KLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +KAFE +D+++ T ++ F + ++T + R I K + + Sbjct: 703 LIKAFENNKDIHIETASKLFKIEEKEKITPNLRRIAKSINFGII---------------- 746 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + A E + ++ + + Sbjct: 747 ----------------------------YRMSDFRLAKELGITKEEAKGFINSYFDSYPK 778 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + E + + K+ S L R Sbjct: 779 IKEF------------------------IINQINFVKNTGY------SETILKRRRYIKE 808 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 + N R + +Q + D + M+ K I+L VHD Sbjct: 809 INSNNYLERSAAERIA-----INSTIQGSAADYMKIAMIKVFNEFKNKKMESKILLQVHD 863 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 E++ E+P +E + +M ++ LPL+A Sbjct: 864 EMLIESPIKEENEVKKILKIMMET-AYTLNLPLRA 897 >gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I) [Deinococcus deserti VCD115] Length = 923 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 100/531 (18%), Positives = 161/531 (30%), Gaps = 137/531 (25%) Query: 160 YCKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 G VT + + L P + E+ L + + RG +D L Sbjct: 495 DAAGRAAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGA 554 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSS 265 L+ E+ G S R +L+T L+ E GL T+ T +R L Sbjct: 555 AAARLAALETEIHQH-VGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEP 613 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 + P V R +LRGT P Sbjct: 614 LRDEHPVIPLVLEFREL-------------------DKLRGT------------YLDPLP 642 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 PR R H Q + +P+ I +R IA +G L+ AD Sbjct: 643 SLVNPRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEMGREIRKGFIADKGYCLISAD 702 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA +A + +AF G D++ T A+ + VT QR K + + Sbjct: 703 YSQIELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVL 762 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A ++++ G++ + +A F +P Sbjct: 763 YGMSA---HRLSNELGIS----------------YVEAAGFIETYFNTYP---------- 793 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 R R E Q + +T + +RR VP Sbjct: 794 --------GIRGYIDRTLEFGRT--QGYVET-------MYGRRRYVP------------- 823 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--- 617 + N R+ Y +Q + DI+ M+ Sbjct: 824 ---------------ELAATNRNVREAGERLAY-----NMPIQGTAADIIKHAMIRLDRE 863 Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 G ++L VHDE++ E P+ + + L +M +PL E Sbjct: 864 LEALGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVE 912 >gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] Length = 885 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 102/639 (15%), Positives = 196/639 (30%), Gaps = 155/639 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 Q L+ LE+ V + L L I + ++LA Sbjct: 364 QPLQTLLEDQAVNKNVFDLKRTIVGLHR---LGIKANNINYDMLLASYLVNNEN------ 414 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +S + E +L + + K + F + + Sbjct: 415 ----NSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDEEIFFNHLAGKVLAIEALKPTL 470 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L+ L+ EQ+ Y + + G D + L T+L+ ++ L Sbjct: 471 LKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRLTELEADIY-L 529 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + L T+T VL K +P +V + R Sbjct: 530 EAGERFNINSPKQLGQILFEKLELPPIKKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQI 589 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L++ + DG R H Q Sbjct: 590 AKIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYQQT 617 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395 +T + DP+ I +R I S +G D + +E RVLA ++G+ Sbjct: 618 LTATGRLSSVDPNLQNIPVRLEEGKKIRKAFIPSNKDGYIF-SCDYSQVELRVLAHVSGD 676 Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF+TG D++ T + F++ P +VT + R K + + Y ++ Sbjct: 677 ENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTPNMRRHAKAVNFGIVYGISDY---GLSKN 733 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + + + + A E ++ T Sbjct: 734 LGISRKQAKEFIDN------YFEQYPKIKDYMDKEINFAREKGYVET------------- 774 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 I +RR +P ++ K + RS Sbjct: 775 ------------------------IMHRRRYLPDIHAKNF---------NVRSFA----- 796 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 R+ +N+ +Q + DI+ M+N K +++ V Sbjct: 797 -ERTAINSP------------------IQGGAADIIKIAMINMQKKLDELNLKSKMLIQV 837 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 HDE++ + P + + +M + +PL A+ Sbjct: 838 HDELIFDVPADELETIKKVVPEVMQNAVH--LDVPLVAD 874 >gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826] Length = 878 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 99/611 (16%), Positives = 190/611 (31%), Gaps = 92/611 (15%) Query: 3 TLFIDF--ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVL 57 L D ET D G+ ++ ++ F+F F+D H L Sbjct: 307 KLLADITPETIVAFDTETTGVD--SKSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQIDL 364 Query: 58 KEALENTDVT----IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113 K A ++ N ++ ++K L+ P + T++LA + S++ Sbjct: 365 KFATWAVGQIYKGCVIGQNLKYDFEIVKNNLGLN-PPANFKDTMILAWLSDPNSSVGMDA 423 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 A +L + ++++ + + +Y D +T + +K Sbjct: 424 LAKRLYDYDTIKFEDVVK-------------KGQTFGDVPLENAAKYAAEDAWITLKFYK 470 Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + E + G ++ A L D + L E+ Sbjct: 471 TFQNTLDPNLLALADMHEFPFILTLFDMEQNGIKINEAKMQKLILENDTKLKALTSEIYE 530 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNKKLTPQAIQVFNNRM 281 L+ G + +++L LF L + +T + VL+ P ++ R Sbjct: 531 LS-GENFNINSVKQLGVILFEHLKLPTKKKTKTGYSTDESVLAELIDAHPVVGKILAYRE 589 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + L A +G SR + Q Sbjct: 590 LYKLQSTYCEPLLALAKKDEG------------------------------SRIYTSFLQ 619 Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T + +P+ I + VR C A EG V D + IE R+LA + + Sbjct: 620 TGTSTGRLSSKNPNLQNIPARGSLAKDVRECFEAREGYSFVGLDYSQIELRLLAHFSRDP 679 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 L+AF+ ED++ T F + RA+ K + L Y G+ K+A+ Sbjct: 680 ALLEAFKNDEDIHARTAISIFGSS----DGQNRAVAKSINFGLIYGMGSS---KLANQVN 732 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA-WRQKHS 515 + + E + A + E+ A + F+ T R + ++ Sbjct: 733 ITRAEAKEYI------ERYFKAFATIKEFLESIKISAKNEGFVQTLLGRKRYFDFKSATP 786 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 ++ + T+ G A K V + N ++L L++ Sbjct: 787 MQMAMF---EREAVNTVFQGSAADLVKMAMVKV--RANLDKNASMLLQIHDELIFEVKDE 841 Query: 576 NRSYLNTTTRQ 586 T++ Sbjct: 842 FAQEFGRATQK 852 >gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381] gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 95/560 (16%), Positives = 203/560 (36%), Gaps = 83/560 (14%) Query: 7 DFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVMPQ 55 D E I D + + + ++ F+F +D+ H D + + Sbjct: 308 DLENVKEIAFDTETTSVDSH--NAKIVGFSFCWDEKSSFYVPLAHSYLGAPDMLDKNIAK 365 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 L EA+ + N ++ +++ F L+ P ++ T++LA +++ A Sbjct: 366 RLIEAIYTKFII--GQNLKYDFRIVRNNFGLN-PPAKYADTMILAWLMDPDNSVGMDNLA 422 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR--EAWRL---FGEYCKGDVTVTRE 170 + + + ++ KGE + +N N+ +AW + ++C T + Sbjct: 423 KRYFDYDTIKFENVVK---KGENFSSVDVKNAANYASEDAWITLKFYKKFCGILSTELLD 479 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + K L E + + + G +D++ + + + L E+ L+ G Sbjct: 480 LAKNL------EFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKILTNEIYDLS-GEN 532 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF GL + T+T + LS+ +L ++ R + Sbjct: 533 FNINSTKQLGEVLFEHLGLPAKKKTKTGYSTNESALSAISELHAVVPKILAYRELYKLQS 592 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 L A+ +D +R Q T Sbjct: 593 TYTEPLLALALKND------------------------------ENRIFSNFLQTGTSTG 622 Query: 348 TSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + +P+ I + +R+C ++ +G V D + IE R+LA + ++ L+AF Sbjct: 623 RLSSKNPNLQNIPAHGSMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAF 682 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 ED++ T F + K++RA+ K + L Y GA K+++ G++ + Sbjct: 683 REDEDIHSRTAISIFGTS----DKEKRAVAKTINFGLIYGMGAS---KLSNELGISRSDA 735 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + E++ A + EN A ++ + T R K+ + ++ + Sbjct: 736 KDYI------EKYFKAFASIKNFMENLKSEAKKNGYTTTLFGR-KRYFDFANATPMQFAM 788 Query: 523 ELHQAFEQTIENGKAIIARK 542 ++ + A I +K Sbjct: 789 YERESVNTKFQGSAADIIKK 808 >gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484] gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484] Length = 915 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 114/654 (17%), Positives = 186/654 (28%), Gaps = 139/654 (21%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A +D + A L + V H S A +P+ Sbjct: 363 IALADASGQAAAFDLSQVDPADENALAAWLADPAQPKVVHASK---EAWHALAGRGMPLA 419 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 LA P L + + E G E +G + D R Sbjct: 420 GVTFDTELAAYLCQPDRRAYDLGDLAIGYLRRELGSEDAQVGGQGA-LDLELDGTDEGRR 478 Query: 152 EAWRLFGEYCKGDVTV----TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 A R DV R L L E L + + G D A +L Sbjct: 479 AAVRASAVRDLADVLAGELGDRGADGLLRDL---ELPLVDVLARMERTGIATDGAYLSSL 535 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267 + D + E ++ G + ++L+ LF + G+ +T +S Sbjct: 536 EKSFDAQVQDAAAEAYAVI-GREVNLGSPKQLQEVLFDQLGMPKTKKIKTGYTTDAASLT 594 Query: 268 KLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 L + F + A R A+ + L+ ++ DGR+ T Sbjct: 595 DLFARTQHPFLEHLLAHRDAIRLRQTVEGLLRSVAPDGRIHTT----------------- 637 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVV 378 Q I ++DP+ I +R + +G L+ Sbjct: 638 --------------FQQTIAATGRLSSADPNLQNIPIRTEAGRQIRRAFVVGDGYETLLT 683 Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438 AD + IE R++A ++G++ + AF +GEDL+ +R F V +VT R+ K M Sbjct: 684 ADYSQIEMRIMAHLSGDEGLIDAFRSGEDLHSYVGSRVFGVPTDEVTPAMRSKIKAMSY- 742 Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498 G G S+ GL+ + + Sbjct: 743 -GLAYGL-------SSYGLSQQLTIEVSEAAG---------------------------- 766 Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + +R + + L + G RR Sbjct: 767 ----------LMQDYFARFGGVRDYLTGVVDVARTTGYTQTILGRRRY------------ 804 Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618 LP L + RQ RE L I Q + D++ M+ Sbjct: 805 ---LP---------------DLTSDNRQ-RREAAERMALNAPI-QGSAADLIKVSMLGVD 844 Query: 619 K------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 + ++L VHDE+V E + L M + A PL Sbjct: 845 RELTRRGLASRLLLQVHDELVLEVAAGEREEVEALVREQMGAAGDAATDGPLDV 898 >gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 537 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 84/462 (18%), Positives = 134/462 (29%), Gaps = 71/462 (15%) Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGEA 115 L + ++ V H+ F +L I + +LA P + Sbjct: 124 LLADPELPKVGHDVKFCEVIL---LRHRIGLVGVSFDTMLASYLLDPEGKNQLHELAERE 180 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L Q ++E R DV + RL Sbjct: 181 LGAKMQTLDEVA---------PKRRGQAQRALDEIELGEASSYGAAFADV--ALSLTDRL 229 Query: 176 EP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P L E L + + G VD L + E L+Q+ + Sbjct: 230 RPRLRVEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREI 289 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMR 282 G + ++L+ LF E L + T+T T VL + + P V +R Sbjct: 290 -VGHDINLASPKQLEAVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHR-- 346 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ P P R H Q Sbjct: 347 -----------------------------AIAKLKGTYVDALPRLVNPGTGRIHTRWGQA 377 Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 + + DP+ I + +R +A G +V AD + IE RVLA ++ + Sbjct: 378 VAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPV 437 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF G+D++V T F V A VT + R K + + Y G A A + Sbjct: 438 LVDAFRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESAL---AKRLDI 494 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 + A + S A R + I Sbjct: 495 SRAEAARFIDACSRICAAATACAALRRSASRRTPPSRGRRRI 536 >gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314] Length = 945 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 101/609 (16%), Positives = 174/609 (28%), Gaps = 138/609 (22%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118 L + + H + V + +A P + + Sbjct: 432 LADEASPKLLHGAK---AVFHMLAGRGFELRGIEHDTAIAAYLLRPGQRTYELADVYQRH 488 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 +++ L + + E + +EI E Sbjct: 489 LQRQLNPSNN------GSNQLTLLDAGDSQVLVDEAVAILELAGELTSQLQEI-NGFELY 541 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L + + G VDVA + + T+ ++ L + ++ Sbjct: 542 RDLEIPLLSILARMEATGIAVDVATLEEQLETFIDQVTREEEAARELAGDPTLNLSSPKQ 601 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLV 295 L+T LF G+ T+T + + L + F + + A R L L+ Sbjct: 602 LQTVLFETFGMPKTKKTKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLI 661 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 ++ SDGR+ T +Q + ++DP+ Sbjct: 662 RSVGSDGRIHTT-------------------------------FNQTVASTGRLSSTDPN 690 Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +RS + EG L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 691 LQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 750 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 ++ F+V VT + R K M L Y A + Sbjct: 751 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQ------------------ 792 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +G K R + L + E Sbjct: 793 -----------------------------LGIPAGEAKTIMESYFERFGGVQRYLAEVVE 823 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q ++G RR LP LN+ R + R Sbjct: 824 QARKSGYTETLFGRRRY---------------LPE---------------LNSDNR-VAR 852 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE-TPDTDEF 642 E L I Q + DI+ M+ + ++L VHDE+V E P E Sbjct: 853 ENAERAALNAPI-QGTAADIIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQ 911 Query: 643 NASMLYHLM 651 +L M Sbjct: 912 VQGILEREM 920 >gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] Length = 886 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 67/364 (18%), Positives = 126/364 (34%), Gaps = 51/364 (14%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E Y + RG VD + ++ +L + G + ++L Sbjct: 490 ELPTVYTLHDMEKRGVRVDRTALEEYSHKLESRIKELHDSIIEYA-GKDFNINSPKQLGP 548 Query: 242 WLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L T+T VL K + P + R + ++ + + Sbjct: 549 VLFEDMALPGGKKTKTGYSTSADVLEKIKNVHPIINDILEYRQLSKLNSTYAIGLGS-FI 607 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +SDGR+ GT +Q IT ++DP+ Sbjct: 608 SSDGRIHGTF-------------------------------NQTITATGRISSTDPNLQN 636 Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I + +R I +G V AD + +E RVLA ++ + AF+ D++ TT Sbjct: 637 IPMRMELGRLIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTA 696 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V +VT QR K + + Y A ++ G++ + + E Sbjct: 697 SEVFGVPIDEVTPLQRRHAKAVNFGIVYGISAF---GLSEDLGISRKEASDFI------E 747 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 ++ D + + + A E+ ++ T R++ K S + + + + Sbjct: 748 KYYDTYKSIKTYLDGQVKFAKENGYVKTMFGRIRPIPELKSSNFMQ-RSFGERVAMNSPI 806 Query: 534 NGKA 537 G A Sbjct: 807 QGSA 810 >gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1] gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1] Length = 850 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 91/497 (18%), Positives = 154/497 (30%), Gaps = 115/497 (23%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L Y + D G V+ L + V +L+Q++ T G + ++L Sbjct: 452 EIEMPLTYSLYRMEDAGIRVERKLLKEYGDRLKVRIAELEQKIYEET-GETFNINSPKQL 510 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + T+T T VL P + + R ++ Sbjct: 511 GEVLFDHMKIPGGKKTKTGYSTAADVLEKLASDWPAVRLILDYRQLTKLNSTY------- 563 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +DG A+ G R H +Q IT +++P+ Sbjct: 564 ---ADG---------LAAYIGP-------------DERIHGTFNQTITATGRISSTEPNL 598 Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I + +R + EG + AD + IE RVLA M+G+Q + A++ ED++ Sbjct: 599 QNIPVRMELGREIRKVFVPQEGCVFIDADYSQIELRVLAHMSGDQRLIGAYKQAEDIHAI 658 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T ++ F+V +VT QR K + + Y + GL++ Sbjct: 659 TASQVFHVPLHEVTPLQRRNAKAVNFGIVYG-----ISSFGLSEGLSITRKEASEYIEKY 713 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + + F + E Sbjct: 714 FETYPGVKTFLDGLVAEAKELGY------------------------------------- 736 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 A + +RR VP + K N + R +N+ + Sbjct: 737 ----AASMFGRRRPVPEL---KSSNFMQRSF------------GERVAMNSPIQ------ 771 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM-LYHL 650 G + I A+ R +G + IVL VHDE++ E + L Sbjct: 772 ---GTAADIIKIAMIR---VDGALRKQGLRSRIVLQVHDELLIEAYREEADQVKELLAEE 825 Query: 651 MTSNPSWAKGLPLKAEG 667 M A L ++A Sbjct: 826 MKHAADLAVSLEVEANA 842 >gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] Length = 877 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 101/630 (16%), Positives = 195/630 (30%), Gaps = 140/630 (22%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE 114 L E LEN + ++ L+I + ++LA P ++ V Sbjct: 358 ELIEWLENDHNNKIVFDAKKTYVAAHR---LEINLQHIDFDVMLASYIIDPSRTIEDVQS 414 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + +Q K IA + KG+ + D H A CK ++ + Sbjct: 415 VVSYYNQNF--VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDILSDHNQ 472 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--TYGLVSS 232 ++ L++ E L + + + G DV + L ++ + + KLD + + G + Sbjct: 473 MDLLNNLELPLARILADMEETGIYTDV---NDLKEMQNELQEKLDNLVSEIYEAAGESFN 529 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF L + T+T VL + P + R Sbjct: 530 INSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQL------- 582 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 S+ + R H +Q + Sbjct: 583 ------------------------SKLQSTYVEGLQK-VISDDQRIHTRFNQTLAQTGRL 617 Query: 350 ITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S+ ++ AD + IE RVLA M ++ +AF Sbjct: 618 SSIDPNLQNIPIRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFI 677 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G+D++ T + F V QV R K + + Y + G+ Sbjct: 678 HGDDIHAATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKKAK 734 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + ++ + + + + A + ++ T Sbjct: 735 AFID------DYLASFPGVKQYMTDIVKDAKANGYVETLL-------------------- 768 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 +RR +P + + + RS R+ +NT Sbjct: 769 -----------------HRRRYIPDITSRNF---------NLRSFA------ERTAMNTP 796 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637 +Q + DI+ M+ K ++L VHDE++ E P Sbjct: 797 ------------------IQGSAADIIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVP 838 Query: 638 DTDEFNASM-LYHLMTSNPSWAKGLPLKAE 666 ++ + S + +M + + A +PL + Sbjct: 839 KSEVQDFSEFVEEIMDNALTLA--VPLLVD 866 >gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411] gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411] Length = 859 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 111/647 (17%), Positives = 179/647 (27%), Gaps = 158/647 (24%) Query: 39 DHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D+ V + D P + L E L N T H+S N + + Sbjct: 338 DNVVIVQDLADVAPKDEKALAEWLANPQATKWLHDSK---KAYHTLQNQGLTLDGVEHDT 394 Query: 98 VLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155 LA P L + ++ EG E + + + K E Sbjct: 395 SLAAYLLRPDVRTLSLADVVQRHVGHELSEGAT------GPERAQAVAELVKALTPEI-- 446 Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 G + ++ E L + + G VD A L+ Sbjct: 447 ----EAAGQAELYFDL----------EVPLALILAAMEHAGIAVDDAALQELSDDYGARL 492 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 + L + ++L+ LF L T+T + +KL Q+ Sbjct: 493 NEEIAAARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNH 552 Query: 276 VFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 F + A R ++ L+EA+ DGR+ T Sbjct: 553 PFLGHLMAHREYQKMKSTIDGLIEAVGDDGRIHTT------------------------- 587 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEA 386 +Q +SDP+ I +R+ EG L+ AD + IE Sbjct: 588 ------FNQKGAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLTADYSQIEM 641 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RV+A ++ + ++A+ +GEDL+ +R F+V +VT + R K + L Y A Sbjct: 642 RVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYGLSAF 701 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 + + Sbjct: 702 GLSQQLKISAWEA----------------------------------------------- 714 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K+ R + L E E G RR LP Sbjct: 715 KRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRRY---------------LPELN 759 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620 S RE L I Q + DI+ M+ + Sbjct: 760 SSNRV----------------ARENAERAALNAPI-QGTAADIIKLAMLRVDREITRQQL 802 Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL--PLKA 665 ++L VHDE+V E + + L+ A L PL Sbjct: 803 ASRVLLQVHDELVVEVAPGE---LEQITELVEREMDAAAQLRVPLDV 846 >gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1] Length = 926 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 74/499 (14%), Positives = 158/499 (31%), Gaps = 121/499 (24%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L + + + G + V +L++++ G + ++ Sbjct: 527 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEA-GEEFNINSPKQ 585 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L LF + + T+T +L P+ V + Sbjct: 586 LGVILFEKLSMPYGKKTKTGYSTAADVLDRLAPEYPIVSD-------------------- 625 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 L++ ++ + + R H +Q IT +++P+ Sbjct: 626 --------ILEYRQLTKLKSTYADGL-VNYIAKDGRIHTSFNQTITATGRLSSTEPNLQN 676 Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I + +R + EG + + AD + IE RVLA M+G++ ++A+ +D++ T Sbjct: 677 IPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITA 736 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 ++ F++ +VT QR K + + Y + + ++ A ++ Sbjct: 737 SQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISKKEAAEYIERYF--- 790 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + ++ + L ++ + Sbjct: 791 --------------------------------------ETYPKIKTFLDGLVAEAKE--K 810 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + +RR VP + S + + R G R +N+ Sbjct: 811 GYVTTMFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNSP---------- 845 Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SM 646 +Q + DI+ M+ ++LTVHDE++ ET +E + Sbjct: 846 --------IQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKI 897 Query: 647 LYHLMTSNPSWAKGLPLKA 665 L M A L + A Sbjct: 898 LEEEMHGAADLAVTLEIDA 916 >gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469] gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469] Length = 912 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 93/510 (18%), Positives = 162/510 (31%), Gaps = 132/510 (25%) Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 LE +S E +L + + RG VD + + + + + T G + Sbjct: 506 LELFTSLEMQLLPVLAAMERRGLYVDPQKLAEQSAQLGEDIAQRVASIHQ-TAGEDFNLD 564 Query: 235 CLEKLKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 +L LF L L +T T +VL + V R RA + Sbjct: 565 SPSQLSHILFDVLKLPTYGLKKTRTGFYSTNAKVLGELAQEYQIVADVLEYRERAKIKST 624 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 L+ L + D R H L+Q +T Sbjct: 625 Y-LDALPSLIRGDKR-------------------------------IHTTLNQTVTATGR 652 Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +SDP+ I + VR+ EG + D + IE R+LA ++ ++ + AF Sbjct: 653 LSSSDPNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADEHLVAAFN 712 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +G D + T AR F V +VT R+ K + + Y A +A++ ++ Sbjct: 713 SGADFHAATAARVFGVPVEEVTPALRSRAKAVNFGIVYGQQAF---GLATSLKISRKEAQ 769 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++ + DA R Sbjct: 770 EMID------RYFDAYPGVRAY-------------------------------------- 785 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 L + E G A + M K ++ S R L+ R+ +N Sbjct: 786 LDDSVRTAHECGYA-----------ITMYGRKRHIREFNQSNRQLIAF---GERTAMNHP 831 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637 Q + DI+ M+N K ++L +HDE+ E P Sbjct: 832 M------------------QGSAADIIKIAMINVEKRLRDEGLTSKLILQIHDELDLEVP 873 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ E ++++ M + +PL A+ Sbjct: 874 ESEIETVSTLVKETMEDVVT--LRVPLIAD 901 >gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] Length = 896 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 78/565 (13%), Positives = 179/565 (31%), Gaps = 68/565 (12%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLK----EALENTDVTIVAHNSYFERTVLKACFNLDIP 89 F H V + +D + EN + +++ + + LK I Sbjct: 349 CFSTKLHEVSYINLPNDKNKALEIILQFQAIFENKNKILISADVKNDIIWLKRA---GIK 405 Query: 90 IHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-K 147 + I + +A P + AL+ + K+ K+ + E + N Sbjct: 406 LKNDIFDIKIAHYVLHPDISHDLGRVALEYLNYKLSGSKKEDQQLTLQFDEEAGTEDNDF 465 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 + E D+ T L ++ E L ++ + G +D ++ Sbjct: 466 AEKTDVIFQLHEKLCDDLQQT----GLLALYNNIEMPLVFVLADMEYEGVSIDCNELQSI 521 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRV 262 + + +++E+ L + + ++L LF + + + +T ++V Sbjct: 522 SSELKERIDIIEKEIYELAH-QEFNISSPKQLGEVLFDKLKIDSNHKKTKSGQYSTSEQV 580 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + P ++ + G + Sbjct: 581 LVKLEDEHPIINKIL-------------------------------DYRGLKKLLTTYAE 609 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-ASEGKKL 376 P P + H +Q + +P+ I +R + ++ Sbjct: 610 ALPSFIDPGTGKIHTHFNQAEAATGRLSSLNPNLQNIPIRTEEGRKIRKAFVTGNDDYLF 669 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 AD + +E R++A ++ ++ + AF G D++ T ++ ++V +VT + R K Sbjct: 670 FSADYSQVELRLMAHLSQDKELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTAN 729 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A +A ++ L+ + D + E E A + Sbjct: 730 FGIIYGISA---WGLAERLHISRKEGKELIDG------YFDLYPGVKKYMEESVEKARKK 780 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 F+ T R ++ R +SR + + + G A K + + +++ Sbjct: 781 EFVETIMGR-RRYLRDINSRNAVVRGMAERNAINAPIQGSAADIIKMAMICIQKRIQEEG 839 Query: 557 -NLILMLPSGRSLVYRDVGNNRSYL 580 +++ L + + YL Sbjct: 840 LMSRMIIQVHDELNF-KCHKSEQYL 863 >gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] Length = 888 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 92/491 (18%), Positives = 148/491 (30%), Gaps = 127/491 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E L + G D A + Q+ + +E + G + + Sbjct: 485 LRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHA-AAGHEFNLGSPK 543 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLKLNTL 294 +L+ LF E L T+T + L Q + V R R + + L Sbjct: 544 QLQEVLFGELALPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTVEGL 603 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ + +DGR+ T +Q + ++DP Sbjct: 604 IKTIAADGRIHTT-------------------------------FNQTVAATGRLSSTDP 632 Query: 355 DPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL Sbjct: 633 NLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDL 692 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T ++ F V P V + R K M L Y A + + L Sbjct: 693 HTTAASQVFAVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAAEARAL--- 746 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 R + + L +A Sbjct: 747 -----------------------------------------MDAYFERFGGVRDYLRRAV 765 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 ++ G RR LP LN+ RQ Sbjct: 766 DEARATGYTATLFGRRRY---------------LP---------------DLNSDNRQ-R 794 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642 RE L I Q + DI+ M+N A ++L VHDEIV E + Sbjct: 795 REAAERMALNAPI-QGTAADIVKIAMLNVDSALKDAGLTSRMLLQVHDEIVLEVAPGERA 853 Query: 643 NASMLYHL-MT 652 A L M Sbjct: 854 TAEELVRREMA 864 >gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] Length = 873 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 82/522 (15%), Positives = 149/522 (28%), Gaps = 132/522 (25%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188 L RF D + +A E + + E L + Sbjct: 426 LTERFSVPSIASGSVDVECVSMVKALLAMNEVACESARRE----ELWSLYETIELPLIHT 481 Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248 + G +D E ++ QE+ L G + ++L LF + Sbjct: 482 LVVMEKNGIYIDTNKLAETTARFKDELAQVQQEIYDLA-GETFNINSPKQLGVILFEKMN 540 Query: 249 LHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305 L + T+T VL + +P ++ R Sbjct: 541 LPVIKKTKTGYSTDAEVLDMLRNESPIVEKILAYR------------------------- 575 Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII----- 360 ++ + R H +Q++T +SDP+ I Sbjct: 576 ------SVAKLVSTYLEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNLQNIPVRTEK 629 Query: 361 SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R+ G LV AD + IE R+LA ++G++ +KAF G+D++ T A Sbjct: 630 GREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGK 689 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 A VT ++R+ K + + Y ++ G+ + + Sbjct: 690 AQEDVTSEERSHAKAINFGIIYGISDF---GLSRDLGITRGEAKNYIDLYF--------- 737 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 SR ++ + + ++ E GK Sbjct: 738 -----------------------------------SRYPKVKEYMDRMVQEAHETGKVRT 762 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLT 598 R+ LP S + R R+ +NT Sbjct: 763 MFGRQ---------------RELPDINSRNFNRRSFAERTAMNTP--------------- 792 Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVC 634 +Q + DI+ M + ++L VHDE+V Sbjct: 793 ---IQGTAADIIKLAMNQVEQKLEEGNFKSRLLLQVHDELVL 831 >gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88] gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88] Length = 882 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 84/503 (16%), Positives = 161/503 (32%), Gaps = 130/503 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L ++ + G+ VD + + + + E K+ +E+ L + ++L Sbjct: 483 EVELPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIYELAD-EEFNVNSPKQL 541 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T +VL + P ++ R + + L Sbjct: 542 GKILFEKLDLPVIKKTKTGYSTNAQVLEVLEDKHPIISKIGYYRQLT-KLYSTYVEGLKN 600 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ DGR+ H +Q +T +++P+ Sbjct: 601 VIDEDGRI-------------------------------HSSFNQTVTTTGRLSSTEPNL 629 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I VR + + E ++ AD + IE RVLA +A ++ + AF+ D++ Sbjct: 630 QNIPIKYEMGREVRKVFVPNYENSIILSADYSQIELRVLAHIADDENLINAFKHHADIHT 689 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT + R K + + Y G + A ++ + T Sbjct: 690 KTASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIGDFSL---AKDLKISRKEAKGYIDT-- 744 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +E N ++M E + A D+++ T Sbjct: 745 ---YFERYPNVKKYMDETI-DKAKRDMYVTTILN-------------------------- 774 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 +RR +P + G R +NT Sbjct: 775 -----------RRRFIPEI---------------GNKNKIVKALGERLAMNTP------- 801 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET-PDTDEFN 643 +Q + DI+ M+ I+L VHDE++ D E Sbjct: 802 -----------IQGSAADIIKMAMVKVFNVLKERDLKSKIILQVHDELILNVYKDELEEI 850 Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666 S++ M + +PL+ + Sbjct: 851 KSIVKDSMENVLP--LSVPLEVD 871 >gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82] gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82] Length = 930 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 74/499 (14%), Positives = 158/499 (31%), Gaps = 121/499 (24%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L + + + G + V +L++++ G + ++ Sbjct: 531 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEA-GEEFNINSPKQ 589 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L LF + + T+T +L P+ V + Sbjct: 590 LGVILFEKLSMPYGKKTKTGYSTAADVLDRLAPEYPIVSD-------------------- 629 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 L++ ++ + + R H +Q IT +++P+ Sbjct: 630 --------ILEYRQLTKLKSTYADGL-VNYIAKDGRIHTSFNQTITATGRLSSTEPNLQN 680 Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I + +R + EG + + AD + IE RVLA M+G++ ++A+ +D++ T Sbjct: 681 IPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITA 740 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 ++ F++ +VT QR K + + Y + + ++ A ++ Sbjct: 741 SQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISKKEAAEYIERYF--- 794 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + ++ + L ++ + Sbjct: 795 --------------------------------------ETYPKIKTFLDGLVAEAKE--K 814 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + +RR VP + S + + R G R +N+ Sbjct: 815 GYVTTMFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNSP---------- 849 Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SM 646 +Q + DI+ M+ ++LTVHDE++ ET +E + Sbjct: 850 --------IQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKI 901 Query: 647 LYHLMTSNPSWAKGLPLKA 665 L M A L + A Sbjct: 902 LEEEMHGAADLAVTLEIDA 920 >gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093] gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093] Length = 867 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 80/470 (17%), Positives = 143/470 (30%), Gaps = 123/470 (26%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E+ + + + G +D A ++ + + L++E+ L + + Sbjct: 466 YEEIERPVAEVLAHMEVTGVRLDTAALAAQSESLAEKLAALEREVRELAGNPNLNLNSRD 525 Query: 238 KLKTWLFLETGLHLEDLTETTCQR----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 +L LF + L T T + L K P + Sbjct: 526 QLAELLFEKLELQAGRKTSTGKRSTAVSALEPLKDAHPVVPLILE--------------- 570 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + ++ P P R H +Q T +++ Sbjct: 571 ----------------YRELAKLKSTYLDPLPRLINPHTGRLHTTFNQTATATGRLSSAN 614 Query: 354 PDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 P+ I +R +A EG L+VAD + IE R+LA + GE+ ++ F GED+ Sbjct: 615 PNLQNIPVRTAVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGEDI 674 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T A+ F V P VT + R + KV+ + Y A + S Sbjct: 675 HRRTAAQIFGVPPEAVTPEGRRVAKVINFGVLYGMSAHRLARELSI-------------- 720 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + +A+ F R E +P+ + + R + + Sbjct: 721 -----PYAEADAFIRSYFEGYPK-------VRAYIDETLAFAR-------------DKGY 755 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +T + +RR +P + N R+ Sbjct: 756 VET-------LFGRRRPIPDIRSS----------------------------NRNAREYA 780 Query: 589 REYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVC 634 Y +Q DI+ M G ++L VHDE+V Sbjct: 781 ERTAY-----NMPIQGTQADIVKLAMVRLLPRLKAHGAKLLLQVHDELVL 825 >gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74] Length = 918 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 106/608 (17%), Positives = 176/608 (28%), Gaps = 144/608 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + + + H++ +++ + + L P AL L Sbjct: 404 LGDPERPKIMHDAK---GLMRVFGEHGMSVAGVSMDTALGAYLVKPGRRTFALGALSLEY 460 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 G+EL+ + R + + + + RL Sbjct: 461 L----GRELV-----PAQESDGQLAFGADDESQARTLMVEARTILDLGTALTARLPEVGA 511 Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L+ E L + G D A + + + +E + G + Sbjct: 512 EGLLTDIELPTSALLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHA-AVGHEFNLG 570 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKL 291 ++L+ LF E L T+T S L Q V R R + Sbjct: 571 SPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVIMLRHREQAKLRSTV 630 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++++ DGR+ T +Q + + Sbjct: 631 EGLIKSIAPDGRIHTT-------------------------------FNQTVAATGRLSS 659 Query: 352 SDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +DP+ I +R + EG + L+ AD + IE RV+A ++ ++ + AF +G Sbjct: 660 TDPNLQNIPVRTDEGRAIRRGFVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAFTSG 719 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ T F V PA V + R K M L Y A + G+ L Sbjct: 720 EDLHRTVAGYVFGVEPAAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEAGEARAL 776 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + T R + + LH Sbjct: 777 MDT--------------------------------------------YFERFGGVRDYLH 792 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + E+ G RR LP LN+ R Sbjct: 793 RVVEEARATGYTATMLGRRRY---------------LP---------------DLNSDNR 822 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639 Q RE L I Q + DI+ M+N +A ++L VHDEIV E Sbjct: 823 Q-RREAAERMALNAPI-QGTAADIVKIAMLNVDRALREAELTSRMLLQVHDEIVLELAPG 880 Query: 640 DEFNASML 647 + + Sbjct: 881 ERAPVEEI 888 >gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4] Length = 930 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 74/499 (14%), Positives = 158/499 (31%), Gaps = 121/499 (24%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L + + + G + V +L++++ G + ++ Sbjct: 531 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEA-GEEFNINSPKQ 589 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L LF + + T+T +L P+ V + Sbjct: 590 LGVILFEKLSMPYGKKTKTGYSTAADVLDRLAPEYPIVSD-------------------- 629 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 L++ ++ + + R H +Q IT +++P+ Sbjct: 630 --------ILEYRQLTKLKSTYADGL-VNYIAKDGRIHTSFNQTITATGRLSSTEPNLQN 680 Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I + +R + EG + + AD + IE RVLA M+G++ ++A+ +D++ T Sbjct: 681 IPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITA 740 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 ++ F++ +VT QR K + + Y + + ++ A ++ Sbjct: 741 SQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSISKKEAAEYIERYF--- 794 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + ++ + L ++ + Sbjct: 795 --------------------------------------ETYPKIKTFLDGLVAEAKE--K 814 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 + +RR VP + S + + R G R +N+ Sbjct: 815 GYVTTMFGRRRPVPEL--------------SSSNFMQRSFGE-RVAMNSP---------- 849 Query: 594 GGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SM 646 +Q + DI+ M+ ++LTVHDE++ ET +E + Sbjct: 850 --------IQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKI 901 Query: 647 LYHLMTSNPSWAKGLPLKA 665 L M A L + A Sbjct: 902 LEEEMHGAADLAVTLEIDA 920 >gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] Length = 886 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 81/515 (15%), Positives = 166/515 (32%), Gaps = 132/515 (25%) Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 ++ + + E L + + G VD + + L++++ + G Sbjct: 477 HQQFDLFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEA-GETF 535 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF + GL + T+T VL +K P + + R A + Sbjct: 536 NINSPKQLGVILFEKMGLPVVKKTKTGYSTAVDVLEQLRKDAPIVQTILDYRQIAKIQST 595 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L+++++ D ++ H Q +T Sbjct: 596 Y-VEGLLKSIHQDNKV-------------------------------HTRYLQTLTQTGR 623 Query: 349 SITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 + DP+ I +R + S ++ +D + IE RVLA ++G+ +AF Sbjct: 624 LSSVDPNLQNIPVRLAEGRKIRQAFVPSHPDWQMFASDYSQIELRVLAHISGDANMQEAF 683 Query: 403 ETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + D++ T + F + + +VT D R K + Y + G++ Sbjct: 684 KEDRDIHANTAMKIFGLNSADEVTPDMRRQAKATNFGIVYGISDYGLSQ---NIGISRQE 740 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + + + A E+ ++ T Sbjct: 741 AKRFIDA------YFEQYPGVQQFMVDIVKKAREEGYVETLF------------------ 776 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 +RR +P ++ K + RS R+ +N Sbjct: 777 -------------------HRRRYLPDIHAKNF---------NLRSFA------ERTAMN 802 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCE 635 T +Q + DI+ M + ++L VHDE++ E Sbjct: 803 TP------------------IQGSAADIIKVAMILMQQELKKANLQARMLLQVHDELIFE 844 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE-GY 668 P + ++ +M S A +PLK E G+ Sbjct: 845 APTEEIPILQKLVPSVMDSAVKLA--VPLKVESGF 877 >gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6] Length = 857 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 111/633 (17%), Positives = 187/633 (29%), Gaps = 148/633 (23%) Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 D +L+ LE++ V H+S R +L + + + L Sbjct: 324 DGGLGEGALALLRGWLEDSARLKVVHDSKRLRVLLARY---GVSLSGVVADPRLESFLVD 380 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK--- 162 P+ L + + + K + R + E Sbjct: 381 PTGL--------VPHRIDQLVKAFLQRTVPPAKSVLGSGKKARRFAELAASVTGAWACQR 432 Query: 163 GDVTVTR--EIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 DV VT +I +RLE + + L + T+ G V+ ++ Sbjct: 433 ADVVVTMWPQIRERLEEVDQLPHLQEVDLPLSEVLATMELAGVRVEPTELEEMSAEFRAT 492 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTP 271 +L+ E+ G + ++L LF E L + T+T T VL + P Sbjct: 493 LLQLEAEIWRQA-GREFNVASPKQLGVVLFEELNLPVIKRTKTGYSTAAEVLERLTREHP 551 Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331 A + +R A ++ A P Sbjct: 552 IAGLLLQHRKLAKLLTT--YTEVLRAA-----------------------------INPV 580 Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEA 386 R H Q I+++PD + +R I + G +++ AD + IE Sbjct: 581 TGRVHPTFQQTYAATGRLISTNPDIQKTPVRTPEGKRIRRAFIPAPGWRIISADWSQIEL 640 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 R+LA + + L+AF ED++ T A F P VT QR++ K + A Y GA Sbjct: 641 RLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDAQRSVAKTVNFATIYGQGAT 700 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 A GL Sbjct: 701 AL---GQRLGLKRTEA-------------------------------------------- 713 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 K + + + L + E + +G RR V + S Sbjct: 714 KGYISRYFQAYAGVREWLDRTIEGALASGYVETLLGRRRV-------------IPELSSN 760 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---- 622 S + R VG R NT +Q + D+ M+ K Sbjct: 761 SAMVRQVGM-RMAANTP------------------IQGSAADLCKLVMLTLAKRFQTRGL 801 Query: 623 --DIVLTVHDEIVCE-TPDTDEFNASMLYHLMT 652 ++L +HDE+V E PD + + ++ M Sbjct: 802 QTRMLLQIHDELVFEAAPDEVDASCQLIREAME 834 >gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046] Length = 876 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 106/648 (16%), Positives = 208/648 (32%), Gaps = 158/648 (24%) Query: 60 ALENTDVTIV-AHNSYFERTVLKACFNLDIPIHRWICT-LVLARSNGLPSALKAVGEALK 117 AL + + T+ A ++ + LKA + + + A + L LK V L Sbjct: 335 ALSDGERTVYTAIDNVVDNADLKAWLQDETKKKYIVDSKATQAMLHRLGIELKGVEFDLL 394 Query: 118 LSSQKME------EGKELIARF--CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 L+S ++ + L F +++E +Y + E+ Sbjct: 395 LASYILKPSISGDDVATLAKEFGYQDVQSNEAIYGKGAKWVVPGADHVAEHVSRKAVAV- 453 Query: 170 EIFKRLEPLSSK--------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 +L+PL + E L ++ + G V++ + + + Sbjct: 454 ---WKLQPLLDQKLKENEQFELYKELELPLAHILGKMESEGITVNIDTLRQMGDDLKAKL 510 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQ 272 ++ + L G + ++L LF + GL + T+T T VL + Sbjct: 511 EVMEATIYELA-GEKFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQSEHDI 569 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 + R A + + L++ ++ + Sbjct: 570 VKYILEYRTLAKLQSTY-IEGLIKEVHKED------------------------------ 598 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEA 386 S+ H Q +T +++P+ I +R + S+ L AD + IE Sbjct: 599 SKVHTRFQQALTSTGRLSSTNPNLQNIPIRLEEGRKIRKAFVPSKKDWILFAADYSQIEL 658 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGA 445 RVLA M G++ ++AF+ G D++ T FN+ P +VT R K + + Y Sbjct: 659 RVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKAVNFGIVYGISD 718 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + + + A + E + + + + E A + F+ T Sbjct: 719 YGLSQ---SLDITRKEAAIFI------ENYLQSFPGVKNYMDTSIEEAKKAGFVTTILN- 768 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +RR +P + + Sbjct: 769 ------------------------------------RRRYLPDITSSNF---------NL 783 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG 621 RS R+ +NT +Q + DI+ + M+ + G Sbjct: 784 RSFA------ERTAMNTP------------------IQGSAADIIKKAMIDMNARLEQEG 819 Query: 622 YD--IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE++ E P + E ++ +M + +PLK E Sbjct: 820 LQTKLLLQVHDELIFEAPKEEIEILERIVPEVMENAIK--LSVPLKVE 865 >gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B] Length = 850 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 83/501 (16%), Positives = 153/501 (30%), Gaps = 130/501 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E+ L + + G+ VD + ++ + KL+ ++ + G + ++L Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIA-GEWFNINSPKQLSY 511 Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L + T+T VL + + RM Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +G LQ P R H Q T +SDP+ Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R + EG L+ AD + IE R+LA ++ ++ + AF+ D++ T Sbjct: 601 IPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F V A VT + R+ K + + Y +A ++ A + Sbjct: 661 AEVFGVDIANVTPEMRSQAKAVNFGIVYGISDY---GLARDVKISRKEAAEFIN------ 711 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + R ++ L + + Sbjct: 712 --------------------------------------KYFERYPKVKEYLDNTVKFARD 733 Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 NG + + ++R V + R+L R +N+ Sbjct: 734 NGFVLTLFNRKRYVKDIKST------------NRNL---RGYAERIAMNSP--------- 769 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646 +Q + DI+ M+ + I+L VHDE++ E P ++ Sbjct: 770 ---------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKR 820 Query: 647 LYHL-MTSNPSWAKGLPLKAE 666 + M + A +PL E Sbjct: 821 IVKREMENAV--ALKVPLVVE 839 >gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] Length = 850 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 83/501 (16%), Positives = 153/501 (30%), Gaps = 130/501 (25%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E+ L + + G+ VD + ++ + KL+ ++ + G + ++L Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIA-GEWFNINSPKQLSY 511 Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L + T+T VL + + RM Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +G LQ P R H Q T +SDP+ Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R + EG L+ AD + IE R+LA ++ ++ + AF+ D++ T Sbjct: 601 IPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F V A VT + R+ K + + Y +A ++ A + Sbjct: 661 AEVFGVDIANVTPEMRSQAKAVNFGIVYGISDY---GLARDVKISRKEAAEFIN------ 711 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + R ++ L + + Sbjct: 712 --------------------------------------KYFERYPKVKEYLDNTVKFARD 733 Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 NG + + ++R V + R+L R +N+ Sbjct: 734 NGFVLTLFNRKRYVKDIKST------------NRNL---RGYAERIAMNSP--------- 769 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646 +Q + DI+ M+ + I+L VHDE++ E P ++ Sbjct: 770 ---------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKR 820 Query: 647 LYHL-MTSNPSWAKGLPLKAE 666 + M + A +PL E Sbjct: 821 IVKREMENAV--ALKVPLVVE 839 >gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] Length = 875 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 80/530 (15%), Positives = 164/530 (30%), Gaps = 132/530 (24%) Query: 154 WRLFGEYCKGDVT-VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212 + + + D+ E + L E L + + G + + + Sbjct: 450 YEAYTAFKGSDLLYKKLEETQMLHLFEDIEMPLVFTLYDMERNGIRAEGEALKVYSSQLG 509 Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKL 269 ++L++E+ + G + ++L LF + L T++ VL Sbjct: 510 GRISELEKEIYEMA-GESFNINSPKQLGVILFEKLLLPGSKKTKSGYSTAASVLDKLAPD 568 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P +V R + + LV + DG Sbjct: 569 YPIVSKVLEYRQLTKLKSTYA-DGLVNYIEEDG--------------------------- 600 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGI 384 R H + +Q IT +++P+ I + +R + +G V AD + I Sbjct: 601 ----RIHSKFNQTITATGRISSTEPNLQNIPVRVELGRLIRKVFVPEDGYIFVDADYSQI 656 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RVLA +G+ ++A+ +D++ T ++ F++ +VT QR K + + Y Sbjct: 657 ELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVTPLQRRNAKAVNFGIVYGIS 716 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 + + + A ++ Sbjct: 717 SFGLSE---DLSIGRKEAAKYIE------------------------------------- 736 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 + + + + ++ ++ + +RR VP + S Sbjct: 737 ----DYFKTYPGIKTFLDDTVAHAKEM--GYVVTLFGRRRPVPEL--------------S 776 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621 + + R G R +N +Q + DI+ M+ + Sbjct: 777 SSNFMQRSFGE-RVAMNAP------------------IQGTAADIMKIAMIGVNRRLKEQ 817 Query: 622 ---YDIVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 +VL VHDE++ E P+ E +L M S +PL+ + Sbjct: 818 NLKSRLVLQVHDELLIEAYRPELPEVE-KILREEMEQAAS--LDVPLEID 864 >gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] Length = 932 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 87/484 (17%), Positives = 149/484 (30%), Gaps = 120/484 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E L + + G D L + + T++ + + + G + + Sbjct: 529 LRDVELPLVTVLAGMERAGIAADTDHLLDLQKHYGAQVTEVAAQAQEI-VGRPFNLSSPK 587 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L+ LF E GL +T + L+ QA + R Sbjct: 588 QLQVILFDELGLPKTKKIKTGYTTDADALAWLSTQADHPLLAVLLRHRDVA--------- 638 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 RLR + + P + R H +Q+I ++DP+ Sbjct: 639 -----RLRTVVD------------SLIPM--IDDAGRVHTTFNQMIAATGRLSSADPNLQ 679 Query: 358 QII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + G + L+ AD + IE R++A ++G++ + AF +GEDL+ Sbjct: 680 NIPVRTAEGRQIRRAFVVGAGYESLLTADYSQIEMRIMAHLSGDKGLIGAFASGEDLHTF 739 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 A++F + +V + R K M L Y A +A G+ Sbjct: 740 VAAQAFGIPVDEVDPELRRRIKAMSYGLAYGLSAF---GLAGQLGI-------------- 782 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 HPE A E +R + + L E+ Sbjct: 783 -----------------HPEEARE-------------QMEAYFARFGGVRDFLRGVVERA 812 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 +G RR LP T+ R+ Sbjct: 813 RADGYTETILGRRRY---------------LPDL----------------TSDNTQRRQM 841 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNAS 645 L I Q + DI+ M+ + A ++L VHDE+V E + + Sbjct: 842 AERMALNAPI-QGSAADIIKIAMLGVDRKLREHGARSRLLLQVHDELVLEIAPGERADVE 900 Query: 646 MLYH 649 L Sbjct: 901 ALVR 904 >gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] Length = 871 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 78/503 (15%), Positives = 153/503 (30%), Gaps = 131/503 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G V+ + + +L+ ++ + G + ++L Sbjct: 473 EIEMPLVFTLYEMESAGVKVEAEALKLYGDQLGEQIIQLEHQIYEMA-GEEFNINSPKQL 531 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + + T+T T VL + P ++ R A + Sbjct: 532 GVILFEKLNMPHAKKTKTGYSTAADVLEKLAEEYPIVSKILEYRQLAKLKSTY------- 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A + G R H + +Q +T +++P+ Sbjct: 585 ----------------ADGLAVFIGDD---------GRIHGKFNQTVTATGRLSSTEPNL 619 Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I + +R + E V AD + IE RVLA +G++ +KA+ D++ Sbjct: 620 QNIPVRMELGRMIRKVFVPKEDCVFVDADYSQIELRVLAHCSGDEQLIKAYREATDIHRM 679 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T ++ F+ +VT QR K + + Y + ++ + A ++ Sbjct: 680 TASQVFHTPFDEVTDLQRRNAKAVNFGIVYGISSF---GLSMDLSITRKEAAEYIE--HY 734 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + + F L + E Sbjct: 735 FETYPGVKKF------------------------------------------LDDSVENA 752 Query: 532 IENGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 E G A+ + +RR VP + K N + R +N Sbjct: 753 KEKGYAVTLFGRRRPVPEL---KSSNFMQRNF------------GERVAMNAP------- 790 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M++ K ++L VHDE++ E ++ Sbjct: 791 -----------IQGTAADIMKIAMIDVHKELKKRNMKSRMILQVHDELLIEAECSEVDEV 839 Query: 645 SMLYH-LMTSNPSWAKGLPLKAE 666 + M + +PL + Sbjct: 840 KEILRDKMENAVK--LSVPLIVD 860 >gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 920 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 81/476 (17%), Positives = 152/476 (31%), Gaps = 114/476 (23%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L Y + G V+ A + V L+QE+ T G + ++L Sbjct: 522 EIEMPLIYSLYHMEQEGVKVERAELEEYGNRLKVRIVDLEQEIYRDT-GKEFNINSPKQL 580 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + + T+T T VL P ++ + R ++ L Sbjct: 581 GEILFEDMKMPGGKKTKTGYSTAADVLDKLAPDYPVVQKILDYRQLTKLNSTYA-EGLAA 639 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DGR+ G + +Q IT +++P+ Sbjct: 640 YIGEDGRIHG-------------------------------KFNQTITATGRISSTEPNL 668 Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I + +R + EG V AD + IE R+LA M+G++ ++A+ + +D++ Sbjct: 669 QNIPVRMELGREIRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAI 728 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F+V +VT QR K + + Y A + ++ + N Sbjct: 729 TASEVFHVPLGEVTPLQRRNAKAVNFGIVYGISAFGLSE---DLSISRKEAVEYI--NKY 783 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E + + F + E Sbjct: 784 FETYPGVKIFLDGLVSQGKEQGYV------------------------------------ 807 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + +RR +P + K N + R +N+ + + Sbjct: 808 -----TTLYGRRRPIPEL---KSANFMQRQF------------GERVAMNSPIQGSAADI 847 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647 K+ AV R++ A + + IVL +HDE++ ET + + + Sbjct: 848 M---KIAMI---AVDRELRARNLKS------RIVLQIHDELLIETAEDEIGTVKEI 891 >gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314] Length = 904 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 101/609 (16%), Positives = 174/609 (28%), Gaps = 138/609 (22%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118 L + + H + V + +A P + + Sbjct: 391 LADEASPKLLHGAK---AVFHMLAGRGFELRGIEHDTAIAAYLLRPGQRTYELADVYQRH 447 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 +++ L + + E + +EI E Sbjct: 448 LQRQLNPSNN------GSNQLTLLDAGDSQVLVDEAVAILELAGELTSQLQEI-NGFELY 500 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L + + G VDVA + + T+ ++ L + ++ Sbjct: 501 RDLEIPLLSILARMEATGIAVDVATLEEQLETFIDQVTREEEAARELAGDPTLNLSSPKQ 560 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLV 295 L+T LF G+ T+T + + L + F + + A R L L+ Sbjct: 561 LQTVLFETFGMPKTKKTKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLI 620 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 ++ SDGR+ T +Q + ++DP+ Sbjct: 621 RSVGSDGRIHTT-------------------------------FNQTVASTGRLSSTDPN 649 Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +RS + EG L+ AD + IE RV+A ++ + ++A+ GEDL+ Sbjct: 650 LQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 709 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 ++ F+V VT + R K M L Y A + Sbjct: 710 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQ------------------ 751 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +G K R + L + E Sbjct: 752 -----------------------------LGIPAGEAKTIMESYFERFGGVQRYLAEVVE 782 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q ++G RR LP LN+ R + R Sbjct: 783 QARKSGYTETLFGRRRY---------------LPE---------------LNSDNR-VAR 811 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE-TPDTDEF 642 E L I Q + DI+ M+ + ++L VHDE+V E P E Sbjct: 812 ENAERAALNAPI-QGTAADIIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQ 870 Query: 643 NASMLYHLM 651 +L M Sbjct: 871 VQGILEREM 879 >gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 892 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 108/648 (16%), Positives = 198/648 (30%), Gaps = 153/648 (23%) Query: 27 DVCVILFAFGFDDHP-VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 D+ + FA DD V++ + D + L L + T H + L + Sbjct: 343 DIDTLAFATTSDDAACVDVPELTPDDE--KALAAWLTDPQATKAMHGAKGPLLAL---WA 397 Query: 86 LDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 + + LA P + AL+ G+EL + + E + Sbjct: 398 RQLDLAGLDSDTQLAAYLLRPDQRSYDLDDLALRHL------GREL-----RVQDSEQVN 446 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTRE--IFKRLEP------LSSKEQELWYLDQTINDR 195 E + + L+ L S E L + + R Sbjct: 447 QETLDFGSERQPAETAMLRARAIAELAGVLDGELDDTSQRGLLHSLEMPLERVLARMEQR 506 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +D+ + L D R + ++ G + ++L+ LF + + T Sbjct: 507 GVAIDMDVLDQLRSEYDA-RVQAAEQAAFAAIGTQINLGSPKQLQAVLFDQLDMPKTKRT 565 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLG 312 ++ + +KL + F + A R + ++TL+++ + DGR+ T Sbjct: 566 KSGYTTDADALEKLYQKTRHPFLEHLLAYRDTIKLRQIIDTLIKSTSDDGRIHTT----- 620 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 Q + ++DP+ I +R Sbjct: 621 --------------------------YVQTVAGTGRLSSTDPNLQNIPIRTPEGRRIRDA 654 Query: 368 VIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + EG + L+ AD + IE RV+A +G++ + AF +G D + T + F+V QVT Sbjct: 655 FVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHSMTASHVFDVPVEQVTP 714 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 QR+ K M L Y A ++S +++ L Sbjct: 715 AQRSSVKQMNYGLAYGLSAY---GLSSRLNVSVPEARAL--------------------- 750 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 Q + + L E+ + G RR Sbjct: 751 -----------------------MDQYFQTFGPVRDYLDSLVEKARKQGYTETMLGRRRY 787 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 LP LN++ RQ R+ L + Q + Sbjct: 788 ---------------LP---------------DLNSSNRQ-RRQMAERMALNAPM-QGTA 815 Query: 607 RDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY 648 DI+ M+ + ++L +HDE+V E + + Sbjct: 816 ADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEVAAGERDRVQQIV 863 >gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583] gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583] Length = 880 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 97/654 (14%), Positives = 197/654 (30%), Gaps = 154/654 (23%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQV--------------------LKEALENTDVTI 68 ++ + + E++ + + + +K L D+ Sbjct: 332 QILGLGLAWGEEETEVYSILPQGFVTEDYLIEKTQEFCQQGKLIASLNIKAMLRYMDLK- 390 Query: 69 VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEG 126 +HN F+ L A L+ + + G P+ +G+ L E+ Sbjct: 391 -SHNDMFD-AGLAAYL-LNPLKSEYTYDDIAKEFLGEMFPAKEDLLGK-LSYIKAANEKE 446 Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186 +EL C + L R E + E L Sbjct: 447 EELAKSVC-YMAYTALKSRTSLLEALEKENMKEL-----------------YTDMEMPLL 488 Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 + + G V+ + + V L++E+ G + ++L LF + Sbjct: 489 FTLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQA-GEEFNINSPKQLGVILFEK 547 Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 L T+T +KL P+ V + Sbjct: 548 LELPGGKKTKTGYSTAADVLEKLAPEHKLVAD---------------------------- 579 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361 L++ ++ + R H +Q IT +++P+ I + Sbjct: 580 ILEYRQLTKLKSTYADGL-ANYIAEDGRIHSTFNQTITATGRISSTEPNLQNIPVRTELG 638 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R I +G + AD + IE RVLA M+G++ ++A++ +D++ T ++ F++ Sbjct: 639 RLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPF 698 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT QR K + + Y + + ++ A +++ + + + F Sbjct: 699 DEVTPLQRRNAKAVNFGIVYGISSFGLSQ---DLSISRKEAAQYIES--YFQTYPKIKGF 753 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + E E + + Sbjct: 754 LDGLVEEAKEKGYV-----------------------------------------STLFH 772 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 +RR VP + K N + R +N+ + G + I Sbjct: 773 RRRPVPEL---KSSNFMQRSF------------GERVAMNSPIQ---------GTAADII 808 Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN 654 A+ R + +VL VHDE++ ET + E +++L M Sbjct: 809 KIAMIR---VNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEA 859 >gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1] gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 866 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 94/551 (17%), Positives = 177/551 (32%), Gaps = 69/551 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ + + S + L+ I V A L L + G + Sbjct: 353 LKDFFADKATQFFGYRSKRDNHALRN---------SGIDVHVTADLV-LAEHLVSGGAKI 402 Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ME G + F K L ++ P + FG + + + +F +L Sbjct: 403 SFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPAQY--FGMFASKLLAIKNYLFVKL 460 Query: 176 EP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + EQ L + + G +D L++ + E + QE+ LT G Sbjct: 461 EEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLT-GC 519 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + ++L L+ G+ D ++T VL + + ++ Sbjct: 520 EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEVLEALEDRHEIIPKIL------------ 567 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 F + P Q R H +Q+ T Sbjct: 568 -------------------MFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRL 608 Query: 350 ITSDPDPLQII-----SDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 DP+ I +R + + + AD + IE R LA ++ ++ +AF Sbjct: 609 SCQDPNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFN 668 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +GED++ T ++ FNV QVTK +R K + L Y A ++ ++++ Sbjct: 669 SGEDIHAFTASQVFNVPLEQVTKQERYQAKAVNFGLVYGQQAY---GLSKILKISVSEAQ 725 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L+ A + A F E ++ +G ER+ W + Sbjct: 726 GLMDAYFAR--YPLAAEFITQTIEQASKNQKVTTMLGR--ERILSDW-ESSPGARAASGR 780 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNT 582 L T G A K + + + + L+L L++ + + Sbjct: 781 L---AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRS 837 Query: 583 TTRQLTREYTY 593 ++ Sbjct: 838 LVQEKMESAME 848 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASMLYH 649 +Q + +++ M+N + ++L +HDE++ E P + E S++ Sbjct: 782 AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQE 841 Query: 650 LMT 652 M Sbjct: 842 KME 844 >gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 895 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 87/498 (17%), Positives = 153/498 (30%), Gaps = 131/498 (26%) Query: 170 EIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + +R + + E L + + G +D L + + + L + G Sbjct: 483 ALDERTRAVLDEIELPLVAVLAEMELNGVAIDAVALTRLRDRLTGKASDLAARAYAEI-G 541 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L+ LF E G+ T+T +S L ++ F + R A Sbjct: 542 HEINLGSPKQLQQVLFEELGMPKTRSTKTGYSTDAASLADLQEKSPHPFLGLLLQHRDAT 601 Query: 289 LK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + TL ++ DGR+ T DQ T Sbjct: 602 KLKQIVETLERSVTGDGRIHTT-------------------------------YDQTGTS 630 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +RS + E + L+ AD + IE R++A ++ + + Sbjct: 631 TGRISSNDPNLQNIPIRTEEGREIRSSFVSGGEDETLLTADYSQIEMRIMAHLSDDPGLI 690 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GEDL+ +R F V P +VT R K M L Y A ++ + Sbjct: 691 EAFNAGEDLHRFVGSRVFGVPPEEVTPLMRTKVKAMSYGLAYGLSAF---GLSKQLRIET 747 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + L+ R Sbjct: 748 SEARELMN--------------------------------------------GYFERFGA 763 Query: 520 LWNELHQAFEQTIENG--KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + L EQ +G + I R+R L Sbjct: 764 VRDYLRNVVEQARLDGFTETIFGRRRPFADL----------------------------- 794 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 T+T ++ RE L I Q + DI+ M+ + G ++L VHDE Sbjct: 795 ----TSTNRVLRENAERQALNAPI-QGSAADIMKIAMLGIAGDMSDQRLGSRMLLQVHDE 849 Query: 632 IVCETPDTDEFNASMLYH 649 ++ E + + Sbjct: 850 LIFEVAPGEGDALETIVR 867 >gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135] gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135] Length = 919 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 90/625 (14%), Positives = 195/625 (31%), Gaps = 156/625 (24%) Query: 67 TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKM 123 ++ N F+ +LK IP + ++A P +L + E Sbjct: 412 KLIGQNYKFDYKILKKHEFNVIPPY---FDTMIAAYVIDPNTKVSLDFLAE--------- 459 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------ 177 K L+ K +E + +N + Y D +T +FK Sbjct: 460 ---KYLMH---KNIRYEEIVAQNGTLKDIPLEMVSNYAAEDADITFRLFKIFTKKLKEDN 513 Query: 178 ----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 ++ E + + + G +D +D E ++ E+ + G+ + Sbjct: 514 LENLMTDIEMPFSNVITEMEENGIYLDKDYLRQYGYELDKELKLIENEIIK-SIGIEFNL 572 Query: 234 RCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L T LF L L ++T +VL + K+ ++ R A Sbjct: 573 NSTKQLHTVLFERLNLVLPQNVKQDSTDIKVLETIKEQHESIPKLIQYRQIA-------- 624 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + + ++ H Q T + Sbjct: 625 -----------------------KLKNTYTDNLIEFVNEKTNKIHTNFIQTKTATGRISS 661 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 + P+ I +R +G + AD + IE +LA ++ ++ ++AF+ + Sbjct: 662 TSPNLQNIPIKDEKGRKIREAFKPEKGNIFISADYSQIELVILAHLSEDESLIEAFKNKK 721 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D+++ T ++ F V +VT R I K + + Y+ A +++ + + Sbjct: 722 DIHIKTASQLFKVDEEKVTSSMRRIAKSINFGIIYRMSAF---RLSKELSIKREEAQKFI 778 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + + + + +N + ++ + T Sbjct: 779 ------DSYFNLYSKIKTFIQNQIDFVRKNGYSET------------------------- 807 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + ++RR + + + G R +N+T Sbjct: 808 ------------LLKRRRYIKEINSQNYS---------------ERSGAERIAINST--- 837 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTD 640 +Q + DI+ M+ I+L VHDE++ E+P+ + Sbjct: 838 ---------------IQGSASDIMKIAMIKVYNELKSKNLKSKILLQVHDEMLIESPEQE 882 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKA 665 + + M N ++ +PLK Sbjct: 883 CEEVNKIIKTMMEN-AYPLKIPLKV 906 >gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 857 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 93/619 (15%), Positives = 179/619 (28%), Gaps = 138/619 (22%) Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 ALE+++V + A + L A D+P++ L L + E Sbjct: 356 LTALEDSEVVVTADGKSLYKAALCAGIG-DLPVYDVTLAAYLLDPTRTAYGLTYLSEVFG 414 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + + + + ET + L+G + + E Sbjct: 415 RTLNE-------VKGEAQNETAN--------EAAFVYSLYGPV--QQALEEKGLSSLFE- 456 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + G+ V+ + + E L+ E+ L G + + Sbjct: 457 --TIESPLERTLAVMELNGFTVNRDRLEEMKADLSREADALETEIYDLA-GESFNINSTK 513 Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF + GL + T+T VL + + ++ Sbjct: 514 QLGVILFEKMGLPVIKKTKTGYSTDSSVLEELAEQSEIVPKILK---------------- 557 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 F + P + R + +Q++T +SDP Sbjct: 558 ---------------FRALKKLISTYLDGLEPLIDEKTERVYTSFNQMVTATGRLSSSDP 602 Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +RS + EG LV D + IE R+LA ++ + + F+ +D+ Sbjct: 603 NLQNIPIRTEQGRKIRSFFVPGEGYDYLVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDI 662 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T + F V +VT + R+ K + + Y ++ G+ N +++ Sbjct: 663 HRRTASEVFGVPFDEVTGELRSHAKAVNFGIIYGISDF---GLSRNLGITRNRAKEYIES 719 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 A + E A T R+ + + S+ + + Sbjct: 720 YFARY------STIHDYMNGLVEEARRTGESRTMFGRL-RTLPEISSKNFMRRSFAERTA 772 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 T G A + +N ++L Sbjct: 773 MNTPIQGSA-----------------------------------ADIIKLAMNAVQKKLE 797 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM-L 647 L M+ + VHDE+V E P ++ L Sbjct: 798 ALN------------------LHSRML----------VQVHDELVLEVPAQEKETIEKLL 829 Query: 648 YHLMTSNPSWAKGLPLKAE 666 M + +PL A+ Sbjct: 830 KETMEEVVT--LSVPLIAD 846 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 96/663 (14%), Positives = 211/663 (31%), Gaps = 162/663 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60 +D E+ D G+ ++ ++ F+F +++ H + L+ A Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQI--SLQSA 368 Query: 61 LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + +V + HN ++ +++ F L++P ++ T++LA S + AL Sbjct: 369 KKAIEVIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSSRVNMDDLAL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ + + +Y D +T + Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLDFL 474 Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LE PL E + + + + G ++ L + + E L +E+ +L Sbjct: 475 KNLETPLLELAKNCEFDFIKIIMMMEENGIKLNTNALEILMKKFENEIKNLSEEIYTLCE 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL+ P ++ + R + Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVITKILDYR-ELA 592 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D + SR + Q T Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC +A +G + D + IE R+LA + ++ L Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ T F + + R++ K + L Y G ++ ++ + Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEA 736 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + K + + Sbjct: 737 HLA--------------------------------------------KSYIEKYFENFTS 752 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +NG + SGR + Y Sbjct: 753 IKKYFETVKNEAKQNG-----------------------FITTLSGR----------KRY 779 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636 + + + Y + +I+Q + D++ M+ K + ++L +HDE++ E Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839 Query: 637 PDT 639 D Sbjct: 840 KDD 842 >gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05] gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05] Length = 887 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 107/647 (16%), Positives = 201/647 (31%), Gaps = 159/647 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L+ LE+ + + L L I +H ++LA Sbjct: 367 LRHLLEDEQIKKNVFDLKRTMVGLHR---LGIHVHGQDYDMLLASYLINNEN-------- 415 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RL 175 +S + E L + E + + + V + + L Sbjct: 416 --NSNDLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDDDEELFNHLASKVNAIENLKQPLL 473 Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L EQ+ + + + G V+ + L V +L+ ++ Sbjct: 474 EKLKEHEQDDLFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKIYQQA 533 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF + L + T+T VL K +P ++ + R A Sbjct: 534 -GERFNLNSPKQLGHILFEKLNLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIA 592 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ + DG R H Q + Sbjct: 593 KIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYLQTL 620 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIA--SEGKKLVVADLAGIEARVLAWMAGEQ 396 T + DP+ I +R + +G D + +E RVLA ++G+Q Sbjct: 621 TATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPTNPDGYIF-SCDYSQVELRVLAHVSGDQ 679 Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF+TG D++ T R F++ P +VT R K + + Y ++ Sbjct: 680 NMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNL 736 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + E +P Sbjct: 737 GISRKRAQEFIDN----------------YFEQYP------------------------- 755 Query: 516 RVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ + +A + E G A I +RR +P ++ KK + RS Sbjct: 756 ---QIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKF---------TVRSFA----- 798 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 R+ +N+ +Q + DI+ M+N K +V+ V Sbjct: 799 -ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQV 839 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 HDE++ + P + + +M S +PL A+ G+ Y Sbjct: 840 HDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603] gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603] Length = 838 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 85/545 (15%), Positives = 179/545 (32%), Gaps = 72/545 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112 KE L N ++ ++ R ++ + + I L++A P+ Sbjct: 317 DAFKEWLANGEMRKHTFDAK--RAIVALKW-KGVDIQGIDFDLLIAAYLLDPADTDKDFR 373 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDV----T 166 A + ++ +E+ + K R P + DV Sbjct: 374 AVAKMKETHAVKSDEEVYGKGAK---------RAVPEQEVVAEHVARKVHVLYDVKQIFE 424 Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E ++ E + E L + + +G VD + + + +++QE+ L Sbjct: 425 EELEKNEQYELFTELELPLARVLADMEVKGVTVDTERLRNMGEELAGRLKEMEQEIYELA 484 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF L + T+T VL ++ + R Sbjct: 485 -GTEFNINSPKQLGVILFENLNLPVLKKTKTGYSTSADVLDKLMDHHAIIPKILHYRQL- 542 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ ++ D S+ H +Q++ Sbjct: 543 GKLNSTYIEGLLKVVHDD------------------------------SSKIHTRFNQVL 572 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQW 397 T +++P+ I +R I SE G + AD + IE RVLA +A ++ Sbjct: 573 TQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEEGWIMYAADYSQIELRVLAHIAKDEG 632 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF+ D++ T F V +VT + R K + + Y + G+ Sbjct: 633 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NLGI 689 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + E + ++ + + + A + ++ T R ++ + SR Sbjct: 690 TRKAAGEFI------ERYLESFPGVQEYMADIVKDAKQKGYVSTLLNR-RRYIPEITSRN 742 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNN 576 L + + T G A K+ + + +++ L+L L++ Sbjct: 743 FNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEE 802 Query: 577 RSYLN 581 L Sbjct: 803 VEKLE 807 >gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] Length = 880 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 96/606 (15%), Positives = 187/606 (30%), Gaps = 134/606 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGE 114 +K L D+ +HN F+ L A L+ + + G P+ +G+ Sbjct: 380 IKAMLRYMDLK--SHNDMFD-AGLAAYL-LNPLKSEYTYDDIAKEFLGEMFPAKEDLLGK 435 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L E+ +EL C + L R E Sbjct: 436 -LSYIKAANEKEEELAKSVC-YMAYTALKSRTSLLEALEKENMKEL-------------- 479 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + E L + + G V+ + + V L++E+ G + Sbjct: 480 ---YTDMEMPLLFTLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQA-GEEFNIN 535 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 ++L LF + L T+T +KL P+ V + Sbjct: 536 SPKQLGVILFEKLELPGGKKTKTGYSTAADVLEKLAPEHKLVAD---------------- 579 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 L++ ++ + R H +Q IT +++P Sbjct: 580 ------------ILEYRQLTKLKSTYADGL-ANYIAEDGRIHSTFNQTITATGRISSTEP 626 Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I + +R I +G + AD + IE RVLA M+G++ ++A++ +D++ Sbjct: 627 NLQNIPVRTELGRLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIH 686 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T ++ F++ +VT QR K + + Y + + ++ A +++ Sbjct: 687 RITASQVFHIPFDEVTPLQRRNAKAVNFGIVYGISSFGLSQ---DLSISRKEAAQYIES- 742 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + F + E E Sbjct: 743 -YFQTYPKIKGFLDGLVEEAKEKGYV---------------------------------- 767 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + +RR VP + K N + R +N+ + Sbjct: 768 -------STLFHRRRPVPEL---KSSNFMQRSF------------GERVAMNSPIQ---- 801 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLY 648 G + I A+ R + +VL VHDE++ ET + E +++L Sbjct: 802 -----GTAADIIKIAMIR---VNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILE 853 Query: 649 HLMTSN 654 M Sbjct: 854 QEMKEA 859 >gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] Length = 859 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 97/577 (16%), Positives = 156/577 (27%), Gaps = 140/577 (24%) Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 L +E L A + + H E+ + L Sbjct: 383 QGLKLDGVEHDTSLAAYLLRPDVRTLGLADVVQRHVGHELSENATGPERAQAVAELVRAL 442 Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 P E L + + G VD A L+ + L Sbjct: 443 TPEIEAAGQAELYFDLEVPLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAAREL 502 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L+ LF L T+T + +KL Q+ F + A R Sbjct: 503 AGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHR 562 Query: 286 SAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ L+EA+ DGR+ T +Q Sbjct: 563 EYQKMKSTIDGLIEAVGDDGRIHTT-------------------------------FNQK 591 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396 +SDP+ I +R+ EG L+ AD + IE RV+A ++ + Sbjct: 592 GAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDA 651 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++A+ +GEDL+ +R F+V +VT + R K + L Y A + Sbjct: 652 GLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYGLSAFGLSQ---QLK 708 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ K+ R Sbjct: 709 ISAGEA--------------------------------------------KRIMDNYFER 724 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + L E E G RR LP S Sbjct: 725 FGGVKRYLDHVVEVAKETGYTETLYGRRRY---------------LPELNSSNRV----- 764 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630 RE L I Q + DI+ M+ + ++L VHD Sbjct: 765 -----------ARENAERAALNAPI-QGTAADIIKLAMLRVDREITRQQLASRVLLQVHD 812 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGL--PLKA 665 E+V E + + L+ A L PL Sbjct: 813 ELVVEVAPGE---LEQITELVEREMDAAAQLRVPLDV 846 >gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644] gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644] Length = 1040 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 93/515 (18%), Positives = 162/515 (31%), Gaps = 131/515 (25%) Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 W V R + LE L + E+ L + + + G +D A L++ Sbjct: 608 EWADASARLGQ-VLAQRVAAEGLERLYDTLERPLIEILADMEEAGVALDRARLRQLSRDF 666 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267 T L+++ L G + +L+ LF GL T T Q VL Sbjct: 667 SARLTDLERQAHQLA-GEPFNLSSPPQLRVILFERLGLPPRGKTPKGEASTAQEVLEELA 725 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 L Q +V R + L+ L + DGR+R T Sbjct: 726 ALH-QLPKVLLEHRRIEKLKNTYLDALPNLTHPDGRIRATF------------------- 765 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK--LVVAD 380 +Q +T +S+P+ I VR +A + + L+ AD Sbjct: 766 ------------NQGVTATGRLSSSEPNLQNIPVRTEEGRQVRQAFVAGDPARQVLLTAD 813 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE RVLA + + L+AFE D++ A+ F VA VT DQR + K + + Sbjct: 814 YSQIELRVLAHFSRDPALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNFGVI 873 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y A +AS G++ + A + + D A + + Sbjct: 874 YGLSA---HGLASRLGISQSEAAAFINA------YFDQYPHVEAFMTRVLTQARDTGRV- 923 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + + R+R + +++ NL Sbjct: 924 -----------------------------------ETLEGRRRAINGIKHVEGRHRNLA- 947 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 R+ +NT ++Q + D++ M+ + Sbjct: 948 ---------------ERTAINT------------------VIQGSAADLIKRAMIAVDQR 974 Query: 621 G------YDIVLTVHDEIVCETPDTDEFNASMLYH 649 ++L +HDE++ E + L Sbjct: 975 LKETKLPARMILQIHDELLFEVERDALTETARLVQ 1009 >gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 83/517 (16%), Positives = 153/517 (29%), Gaps = 136/517 (26%) Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210 G + R ++ L L E L + + G+ VD + Sbjct: 421 WAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKE 480 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNK 267 ++ + KL+ ++ + G + ++L LF + L + T+T VL Sbjct: 481 IESKLLKLESQIYQIA-GEWFNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELY 539 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + RM + + Sbjct: 540 DKHDIIPLILDYRMYTKILTT------------------------------YCQGLVQA- 568 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 P R H Q T +++P+ I +R + EG L+ AD + Sbjct: 569 INPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYS 628 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA ++ ++ + AF+ D++ T A F V +QVT R+ K + + Y Sbjct: 629 QIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYG 688 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 ++ ++ A + Sbjct: 689 ISDY---GLSRDIKISRKEAAEFINRYF-------------------------------- 713 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 +K+ RV E L + ENG + R+ +KN Sbjct: 714 ---------EKYPRVKE---YLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKN------ 755 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG- 621 R+ R +N+ +Q + DI+ M+ K Sbjct: 756 --LRNYA------ERIAMNSP------------------IQGSAADIMKIAMIRVYKKLK 789 Query: 622 -----YDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652 I+L VHDE++ E+P + E ++ M Sbjct: 790 ENNLKSRIILQVHDELLIESPYEEKEIVKEIVKSEME 826 >gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70] gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s] gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923] gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2] gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150] gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023] Length = 866 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 94/551 (17%), Positives = 176/551 (31%), Gaps = 69/551 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ + + S + L+ I V A L L + G + Sbjct: 353 LKDFFADKATQFFGYRSKRDNHALRN---------SGIDVHVTADLV-LAEHLVSGGAKI 402 Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ME G + F K L ++ P + FG + + + +F +L Sbjct: 403 SFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPSQY--FGMFASKLLAIKNYLFVKL 460 Query: 176 EP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + EQ L + + G +D L++ + E + QE+ L G Sbjct: 461 EEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDL-VGC 519 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + ++L L+ G+ D ++T VL + + ++ Sbjct: 520 EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEVLEALEDRHEIIPKIL------------ 567 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 F + P Q R H +Q+ T Sbjct: 568 -------------------MFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRL 608 Query: 350 ITSDPDPLQII-----SDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 DP+ I +R + + + AD + IE R LA ++ ++ +AF Sbjct: 609 SCQDPNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFN 668 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +GED++ T ++ FNV QVTK QR K + L Y A ++ ++++ Sbjct: 669 SGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGLVYGQQAY---GLSKILKISVSEAQ 725 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L+ A + A F E ++ +G ER+ W + Sbjct: 726 GLMDAYFAR--YPLAAEFITQTIEQASKNQKVTTMLGR--ERILSDW-ESSPGARAASGR 780 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNT 582 L T G A K + + + + L+L L++ + + Sbjct: 781 L---AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRS 837 Query: 583 TTRQLTREYTY 593 ++ Sbjct: 838 LVQEKMESAME 848 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 595 GKLTENI-VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646 G+L N +Q + +++ M+N + ++L +HDE++ E P + E S+ Sbjct: 779 GRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSL 838 Query: 647 LYHLMT 652 + M Sbjct: 839 VQEKME 844 >gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29] gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29] Length = 890 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 99/632 (15%), Positives = 203/632 (32%), Gaps = 141/632 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + K L N ++ ++ R ++ + I I L++A P+ Sbjct: 369 EAFKAWLANGEMRKRTFDAK--RAIVALKW-KGIDIQGIDFDLLIAAYLLDPADTDKDFR 425 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 + KM+E + ++ E +Y + + E+ V V ++ + Sbjct: 426 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQT 474 Query: 175 -LEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 LE L EQ L + + +G VD + + + +++QE+ Sbjct: 475 FLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYK 534 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF L + T+T VL + + R Sbjct: 535 LA-GTEFNINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQ 593 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ D S+ H +Q Sbjct: 594 L-GKLNSTYIEGLLKVVHED------------------------------SSKIHTRFNQ 622 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGE 395 ++T ++DP+ I +R + SE G + AD + IE RVLA +A + Sbjct: 623 VLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAND 682 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 683 KGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQ---NL 739 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ A + E++ ++ + ++ + A + ++ Sbjct: 740 GITRKAAAEFI------EKYLESFPGVQEYMDDIVKDAKQKGYV---------------- 777 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 A + +RR +P + + + RS Sbjct: 778 ---------------------ATLLNRRRYIPEITSRNF---------NLRSFA------ 801 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ +NT + + I+ ++ ++L VHDE++ E Sbjct: 802 ERTAMNTPIQGSAADII------------KIAMIIMADRLDEEGLQARLLLQVHDELIFE 849 Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 P + L +M A +PLK + Sbjct: 850 APKEEIEKLEKLVPEVMEHAIELA--VPLKVD 879 >gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56] gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56] Length = 869 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 108/583 (18%), Positives = 194/583 (33%), Gaps = 76/583 (13%) Query: 29 CVILFAFGFDDHPVELWDC--VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ A DD V D D V+ + LK+ D +N + LK N Sbjct: 327 SLMGVALACDDS-VYYVDVENATDDVI-KPLKDFFGRKDTEFYGYNIKRDSHALK---NA 381 Query: 87 DIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 I ++ L LA G + + + L L S GKE Sbjct: 382 GIHVNNIALDLALAEHLINGGAKISYQTLLADLGLVSSAGRYGKEWGQL-------SLPI 434 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGY 197 ++ PN + FGE+ T+ + K L+ + + E L + TI G Sbjct: 435 QKSPPNPAQ---YFGEFVSHLPTIKETLLKELKSKNIEDIFFNMEMPLEKVLFTIERNGM 491 Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257 +DV L +I+ E L ++ +L G + + ++L L+ + GL D + Sbjct: 492 PLDVEDLQNLEKILSEELAILADDIYALA-GSPFNIKSPKQLAEVLYNKLGLTPVDKARS 550 Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 T VL + ++ F + Sbjct: 551 TKAEVLEAMTGEHDVIEKILA-------------------------------FRSVEKLL 579 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-AS 371 P Q P R H +Q+ T DP+ I +R Sbjct: 580 STYVRALPKQVDPCTFRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTH 639 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431 + + AD + IE R LA ++ ++ AFE+ ED++ T ++ F+V +VTK QR Sbjct: 640 QNTYFLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQ 699 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y A ++ ++++ L+ + + D F E Sbjct: 700 AKTVNFGIIYGQQAY---GLSKILKISVSEAQKLIDA--YFDRYPDVARFINETVSQACE 754 Query: 492 HAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 + +G ER+ W + +SR + A I+ A + + Sbjct: 755 NLRVKTLLGR--ERIIDNWTEFSNSRAAS----GRLAVNTRIQGSAAELIKLAMLQLSDA 808 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 ++K K ++L L++ + + T R + Sbjct: 809 LEKRKLRSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAMI 851 Score = 39.0 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 7/47 (14%) Query: 595 GKLTENI-VQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVC 634 G+L N +Q + +++ M+ + A ++L +HDE++ Sbjct: 782 GRLAVNTRIQGSAAELIKLAMLQLSDALEKRKLRSRMLLQIHDELIF 828 >gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] Length = 880 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 110/619 (17%), Positives = 199/619 (32%), Gaps = 144/619 (23%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647 +Q + DIL M+N KA ++L VHDEIV E P DE A ++ Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVP-NDELTAIKKLV 852 Query: 648 YHLMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 853 KDTMEAAVDLA--VPLCVD 869 >gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002] gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002] Length = 850 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 75/483 (15%), Positives = 145/483 (30%), Gaps = 127/483 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E+ L + + G+ VD + ++ + KL+ ++ + G + ++L Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIA-GEWFNINSPKQLSY 511 Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L + T+T VL + + RM Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +G LQ P R H Q T +SDP+ Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R + G L+ AD + IE R+LA ++ ++ + AF+ D++ T Sbjct: 601 IPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F V A VT + R+ K + + Y +A ++ A + Sbjct: 661 AEVFGVDIADVTPEMRSQAKAVNFGIVYGISDY---GLARDIKISRKEAAEFIN------ 711 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + R ++ + + + Sbjct: 712 --------------------------------------RYFERYPKVKEYIDNTVKFARD 733 Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 NG + + ++R + + R+L R +N+ Sbjct: 734 NGFVLTLFNRKRYIKDIKST------------NRNL---RGYAERIAMNSP--------- 769 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646 +Q + DI+ M+ + I+L VHDE++ E P ++ Sbjct: 770 ---------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKE 820 Query: 647 LYH 649 + Sbjct: 821 IVK 823 >gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] Length = 880 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDIVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q + DIL M+N KA ++L VHDEIV E P+ + L Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 Query: 650 -LMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 854 DTMEAAVDLA--VPLCVD 869 >gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 561 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 93/564 (16%), Positives = 188/564 (33%), Gaps = 85/564 (15%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVM------------PQVLKEALENTDVTIVAHNSYFE 76 + AF F + V D + +K+ L + S + Sbjct: 17 EIKKIAFSFGEDTVY-IDVFQIEDLKEIFEKEEFEFTTHEIKDFLVKLSYKGIECKSKYI 75 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKE--LIAR 132 T + A L+ + VL + +PS + G+ +K+EE E L Sbjct: 76 DTAIMAYL-LNPSESNYDLDRVLKKYLKVDVPSYEEVFGK--GRDKKKLEEIGEDILADY 132 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 C + + RE F E ++ K L E L + + + Sbjct: 133 ICS-------RCVHLFDLREKLMNFIE--------EMDMKKLL---LEIEMPLVEVLKLM 174 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G+ +D + L+Q +D ++ ++ G + ++L +LF + L + Sbjct: 175 EVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVI 233 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T+T ++L P + ++ +++ Sbjct: 234 KKTKTGYSTDSEVLEQLVP----------------------YNDVVSD------IIEYRQ 265 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 ++ F P +R H Q++T +++P+ I +R Sbjct: 266 LTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRA 324 Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 I + +V AD + IE RVLA ++G++ +++F ED+++ T A F V +VT Sbjct: 325 FIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTP 384 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y ++ ++ + + + + Sbjct: 385 EMRRAAKAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYI 435 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 E A E+ ++ T R ++ + +SR ++ + G A K V Sbjct: 436 EKIVRFAKENGYVTTIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMV 494 Query: 547 PLVY-MKKDKNNLILMLPSGRSLV 569 + KK + L+L LV Sbjct: 495 KVYEDFKKLQLKSQLILQVHDELV 518 >gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] Length = 895 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 91/521 (17%), Positives = 155/521 (29%), Gaps = 131/521 (25%) Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + D V RL LS E L +L + G VD L + + + Sbjct: 477 AELDSAVEAAGGDRL--LSEVELPLLHLLARMEKTGIAVDTEHLDALERHFAGQMKQAAD 534 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 E + G + ++L+ LF E + T+T + ++L + F Sbjct: 535 EAYGVI-GKEINLGSPKQLQVVLFDELDMPKTKRTKTGWTTDADALQQLYVKTEHPFLLA 593 Query: 281 MRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 + R + + L++ + DGR+ T Sbjct: 594 LLRHRDVTRLRVTIEGLLKTVQDDGRIHTT------------------------------ 623 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAW 391 +Q I +++P+ I +R + G + L+ AD + IE R++A Sbjct: 624 -FNQTIAATGRLSSTEPNLQNIPVRTEEGRGIRKGFVVGGGFESLMTADYSQIEMRIMAH 682 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 ++ ++ ++AF +G D + T AR F V P V+ +QRA K M L Y A + Sbjct: 683 LSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNYGLAYGLSAFGLSQ- 741 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 G+ + L Sbjct: 742 --QLGIEPSEARGL--------------------------------------------ME 755 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 + + + L E+ G RR L +L R R Sbjct: 756 EYFETFGGIRDYLRSLVEEARRTGYTETIMGRRRY-----------LPDLLSDNRQ---R 801 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625 R LN +Q + D++ M+ A ++ Sbjct: 802 RETAERMALNAP------------------IQGSAADLIKVAMLRVQAAIDEADLSSRML 843 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 L VHDE+V E + L M S +PL Sbjct: 844 LQVHDELVFEVAPGEREALESLVRAQMGSAAD--LNVPLDV 882 >gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98] Length = 877 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 82/547 (14%), Positives = 184/547 (33%), Gaps = 76/547 (13%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 + + L++ ++ ++ R ++ + + I L++A P+ Sbjct: 356 EAFIKWLKDEEMRKYTFDAK--RAIVALKW-KGVEIRGVDFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV------- 167 + KM+E + ++ E +Y + A + E+ V V Sbjct: 413 ----TVAKMKETHAV-------KSDEEVYGKGAKRAVPAQEIVAEHVARKVHVLYDVKQT 461 Query: 168 ---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E ++ E + E L + + +G VD + + +++QE+ Sbjct: 462 FIDELEKNEQYELFINLEMPLACVLADMEVKGVKVDTERLRNMGDELAGRLKEMEQEIYE 521 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G + ++L LF + L + T+T VL ++ + R Sbjct: 522 LA-GTEFNINSPKQLGVVLFEKLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPKILHYRQ 580 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ + S+ H +Q Sbjct: 581 L-GKLNSTYIEGLLKVVHDE------------------------------SSKIHTRFNQ 609 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 ++T +++P+ I +R I S EG + AD + IE RVLA +A + Sbjct: 610 VLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSQEGWVMYAADYSQIELRVLAHIAKD 669 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + ++AF+ D++ T F V +VT + R K + + Y + Sbjct: 670 KGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNFGIVYGISDYGLSQ---NL 726 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + E++ + + + + A + ++ T R ++ + S Sbjct: 727 GITRKAAGEFI------EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNR-RRYIPEITS 779 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVG 574 R + + + T G A K+ + + +++ L+L L++ Sbjct: 780 RNFNVRSFAERTAMNTPIQGSAADIIKKAMIVMADRLEEEGLQARLLLQVHDELIFEVPK 839 Query: 575 NNRSYLN 581 L Sbjct: 840 EEIEKLE 846 >gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20] Length = 945 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 95/515 (18%), Positives = 153/515 (29%), Gaps = 129/515 (25%) Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 L + E + + D G VD A+ +D R E Sbjct: 532 QMVARDALGLFTDLEMPVAATLTVMEDAGIAVDDAVLQIRQTELDA-RVTHAAEGAYAAA 590 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G + ++L+ LF E + T+T + L + F + R A Sbjct: 591 GRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDA 650 Query: 288 VL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L +A+ DGR+ T Q I Sbjct: 651 IKLRQTVEGLRKAIQPDGRIHTT-------------------------------FQQTIA 679 Query: 345 HLPTSITSDPDPLQIISD-----CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I + +R EG + L+ AD + IE R++A ++ +Q Sbjct: 680 ATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRIMAHLSADQAL 739 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 + AF +GEDL+ A + VT QR+ K M L Y +A G++ Sbjct: 740 IDAFRSGEDLHRYVAALVHGIDVEDVTAQQRSHVKAMSYGLAYGLSTF---GLARQLGID 796 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A L +R Sbjct: 797 NADAADLRN--------------------------------------------AYFARFG 812 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 ++ + L EQ +G RR LP Sbjct: 813 KVHDYLESVVEQARRDGYTETMFGRRRY---------------LP--------------- 842 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 L + RQ RE L I Q + DI+ + M++ A I+L +HDE+ Sbjct: 843 DLTSDNRQ-RREMAERAALNAPI-QGSAADIVKKAMIDVDSALTERALASRILLQIHDEL 900 Query: 633 VCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + E P E ++L M +PL Sbjct: 901 LIEVAPGEAEAVENLLKEQMGGAAE--LSVPLDVA 933 >gi|332523957|ref|ZP_08400209.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] gi|332315221|gb|EGJ28206.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] Length = 887 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 109/689 (15%), Positives = 211/689 (30%), Gaps = 185/689 (26%) Query: 25 AED----VCVI--------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72 AED ++ + AF + + P++L++ L + Sbjct: 326 AEDSFFYFEILKDNYHREAITAFAWGNQEAIYV-----SQNPELLRQPLFTKVLEKPIFT 380 Query: 73 SYFER-TVLKACFNLDIPIHRWICTLVLARSNGLP------SALKAVGEALKLSSQKMEE 125 F+R VL ++IP LA + + + ++ L S + Sbjct: 381 YDFKRAKVLLNHLGIEIP--EAAFDARLANYLLSNVDDNELATIARLHTSISLESDEAIY 438 Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---- 181 GK + F LF + + LE L+ Sbjct: 439 GKGVKRAF-----------------PAKDLLFSHLARKVAVLAASKPVMLEKLADNGQSD 481 Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E L + + G V+ + + L QE+ L G + Sbjct: 482 LYYKIELPLANVLAKMEIAGIKVNKQTLMEMAEQNRNVIDALTQEIYDLA-GEEFNINSP 540 Query: 237 EKLKTWLFLETGLH--LEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L + LF + L + T+T VL + P ++ + R + L Sbjct: 541 KQLGSILFEKMQLPLTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTY-L 599 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L + + DG++ H Q +T + Sbjct: 600 IGLQDYIMEDGKI-------------------------------HTRYVQDLTQTGRLSS 628 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVAD-LAGIEARVLAWMAGEQWKLKAFETG 405 +DP+ I +R S ++++ + IE RVLA ++G++ + AF Sbjct: 629 TDPNLQNIPIRMEQGRLIRKAFTPSSDDSVLLSSDYSQIELRVLAHISGDEHLIAAFNNN 688 Query: 406 EDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 D++ T R F + VT + R K + + Y +++ G++ Sbjct: 689 ADIHTATAMRVFGIEKETDVTPNDRRNAKAVNFGIVYGISDF---GLSNNLGISRKKARD 745 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 + T + + + ++ A + ++ Sbjct: 746 YIDT------YFERYPGIKAYMDSVVREAKDKGYVE------------------------ 775 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + ++RR++P + + R+ R R+ +N+ Sbjct: 776 -------------TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP- 806 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPD 638 +Q + DIL M+N KA D ++L VHDEIV E P+ Sbjct: 807 -----------------IQGSAADILKIAMINLDKALADRAFKAKMLLQVHDEIVLEVPN 849 Query: 639 TDEFNASML-YHLMTSNPSWAKGLPLKAE 666 + L +M A +PL+A+ Sbjct: 850 QELVTVRQLVKEIMEDAVDLA--VPLRAD 876 >gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J] gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J] Length = 881 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 110/659 (16%), Positives = 208/659 (31%), Gaps = 155/659 (23%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNLDIPIHR 92 F + + ++ + V+ + +A + F+R +L + N+D+P R Sbjct: 341 TFAWGNTE-NIYVSQNPEVLKTDVFQAFLRKPMATY----DFKRAKILLSHLNIDVP--R 393 Query: 93 WICTLVLARSNG---LPSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRN 146 LA + L + L S + GK + F + L + Sbjct: 394 GAFDARLANYLLSNVDDNQLSTIARVHTNIHLESDDVVYGKGVKRAF----PDKGLLFAH 449 Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 + D +L E L + + G V+ Sbjct: 450 LAKKIKVLVESKAT-MLD---KLSDHDQLALFEDIEMPLANVLAKMEITGIKVNKETLVE 505 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTETTCQR--- 261 + + V +L QE+ L G + ++L + LF + L +E T+T Sbjct: 506 MAEQNKVIIDRLTQEIYDLA-GEEFNINSPKQLGSILFEKMQLPIEMTKKTKTGYSTAVD 564 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + P ++ + R + L L + + DG++ Sbjct: 565 VLERLAPIAPVVAKILDYRQITKLQSTY-LIGLQDYIMEDGKI----------------- 606 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKK 375 H Q +T + DP+ I +R AS E Sbjct: 607 --------------HTRYVQDLTQTGRLSSIDPNLQNIPIRMEQGRLIRKAFTASSEDAL 652 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKV 434 L+ +D + IE RVLA ++G+Q + AF D++ +T R F + + VT + R K Sbjct: 653 LLSSDYSQIELRVLAHISGDQHLITAFNEDADIHTSTAMRVFAIDKEEDVTANDRRNAKA 712 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y +++ G++ + T + D + ++ A Sbjct: 713 VNFGIVYGISDF---GLSNNLGISRQKAKEYINT------YFDRYPGIKDYMDSIVREAK 763 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 + ++ + ++RR++P + Sbjct: 764 DKGYVE-------------------------------------TLFKRRRELPDI----- 781 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + R+ R R+ +N+ +Q + DIL M Sbjct: 782 ---------NSRNFNVRSF-AERTAINSP------------------IQGSAADILKIAM 813 Query: 615 MNATKAGYD------IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 +N KA + ++L VHDEIV E P + L M +PL+A+ Sbjct: 814 INLDKALEEGRFKTKMLLQVHDEIVLEVPKDELEKVKQLVKETMEHAVD--LSVPLRAD 870 >gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] Length = 871 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 77/503 (15%), Positives = 151/503 (30%), Gaps = 129/503 (25%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L + + G V Q + + +L+ E+ + G + ++ Sbjct: 472 TDIEMPLAFTLFDMEQAGVKVKAEELKVYGQQLGGKINELETEIYEIA-GETFNINSPKQ 530 Query: 239 LKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L LF L T+T T VL P ++ R A + + L Sbjct: 531 LGVVLFEHLNLPNGKKTKTGYSTAADVLEKLAPDYPIVSKILEYRQLAKLKSTYA-DGLA 589 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + DG R H + +Q +T +++P+ Sbjct: 590 NFIQEDG-------------------------------RIHGKFNQTVTATGRISSTEPN 618 Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I + +R + E V AD + IE R+LA +G++ + A++ D++ Sbjct: 619 LQNIPVRMELGRLIRKVFVPEEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHR 678 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T ++ F++ +VT +R K + + Y + + + + Sbjct: 679 ITASQVFHIPFDEVTDLERRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAGEYID--- 732 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + + + ++ ++ Sbjct: 733 --------------------------------------NYFKTYPGIKTFLDDTVAHAKE 754 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + + +RR VP L SG + R +N Sbjct: 755 --QGYVVTLFGRRRPVP-------------ELESGNFMQRSF--GERVAMNAP------- 790 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFN 643 +Q + DI+ M+ + +VL VHDE++ E D E Sbjct: 791 -----------IQGTAADIMKIAMIGVNRTLKEKQMKSKLVLQVHDELLIEAYKDEVEEV 839 Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666 S+L M S +PL + Sbjct: 840 KSILKREMEEAAS--LSVPLDID 860 >gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479] gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479] Length = 598 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 80/486 (16%), Positives = 144/486 (29%), Gaps = 123/486 (25%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L Y + G + + V+ L+Q++ T G + ++ Sbjct: 199 TDIEMPLIYSLFHMEQVGIKAERVRLKEYGDRLKVQIAVLEQKIYEET-GETFNINSPKQ 257 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 L LF L T++ KL P V Sbjct: 258 LGEVLFDHMKLPNGKKTKSGYSTAADVLDKLAPDYPVV---------------------- 295 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + L + ++ P R H +Q IT +++P+ Sbjct: 296 ------QMILDYRQLTKLNSTYAEGLAVYIGP-DERIHGTFNQTITATGRISSTEPNLQN 348 Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I + +R + +G + AD + IE RVLA M+G++ + A+ ED++ T Sbjct: 349 IPVRMELGREIRKIFVPEDGYVFIDADYSQIELRVLAHMSGDERLIGAYRHAEDIHAITA 408 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F+ +VT QR K + + Y + + ++ + Sbjct: 409 SEVFHTPLDEVTPLQRRNAKAVNFGIVYGISSFGLSE---GLSISRKEATEYIN------ 459 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + + + V E L + E Sbjct: 460 -----------------------------------KYFETYPGVKEF---LDRLVADAKE 481 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYT 592 G A+ RR +P +S + R +N+ Sbjct: 482 TGYAVSMFGRR---------------RPVPELKSANFMQRSFGERVAMNSP--------- 517 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTDEFNAS 645 +Q + DI+ M+ +A IVL VHDE++ ET D E + Sbjct: 518 ---------IQGTAADIMKIAMIRVDRALKAKGLKSRIVLQVHDELLIETRKDEVEAVKA 568 Query: 646 MLYHLM 651 +L M Sbjct: 569 LLVDEM 574 >gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1] gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1] Length = 887 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 107/647 (16%), Positives = 201/647 (31%), Gaps = 159/647 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L+ LE+ + + L L I +H ++LA Sbjct: 367 LRHLLEDEQIKKNVFDLKRTMVGLHR---LGIHVHGQDYDMLLASYLINNEN-------- 415 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RL 175 +S + E L + E + + + V + + L Sbjct: 416 --NSNDLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDDDEELFNHLASKVNAIENLKQPLL 473 Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E L EQ+ + + + G V+ + L V +L+ ++ Sbjct: 474 EKLKEHEQDDLFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKIYQQA 533 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRA 283 G + ++L LF + L + T+T VL K +P ++ + R A Sbjct: 534 -GERFNLNSPKQLGHILFEKLNLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIA 592 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L++ + DG R H Q + Sbjct: 593 KIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYLQTL 620 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIA--SEGKKLVVADLAGIEARVLAWMAGEQ 396 T + DP+ I +R + +G D + +E RVLA ++G+Q Sbjct: 621 TATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPTEPDGYIF-SCDYSQVELRVLAHVSGDQ 679 Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF+TG D++ T R F++ P +VT R K + + Y ++ Sbjct: 680 NMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNL 736 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + E +P Sbjct: 737 GISRKRAQEFIDN----------------YFEQYP------------------------- 755 Query: 516 RVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ + +A + E G A I +RR +P ++ KK + RS Sbjct: 756 ---QIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKF---------TVRSFA----- 798 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 R+ +N+ +Q + DI+ M+N K +V+ V Sbjct: 799 -ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQV 839 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 HDE++ + P + + +M S +PL A+ G+ Y Sbjct: 840 HDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1] gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus pyogenes SSI-1] Length = 880 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q + DIL M+N KA ++L VHDEIV E P+ + L Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 Query: 650 -LMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 854 DTMEAAVDLA--VPLCVD 869 >gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] Length = 885 Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats. Identities = 102/658 (15%), Positives = 205/658 (31%), Gaps = 149/658 (22%) Query: 34 AFGFDDHPVELWDCVHD-PVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F D + W D ++ Q LK+ LE+ V N+ + L L I + Sbjct: 341 GFVIGDG--KTWLVSRDAELLKQDPLKKLLESPAVAKNVFNAKAQIVGLHR---LGIDLR 395 Query: 92 RWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149 L+LA ++ AL+ ++ +E+ + K R P Sbjct: 396 NVDFDLLLASYLLNTNDNSNDLGQVALEHDYHEVATDEEVYGKGAK---------RAIPA 446 Query: 150 HREAWRLFGEYCKGDVTVTRE-IFKRL------EPLSSKEQELWYLDQTINDRGYCVDVA 202 + + + R +FK+L + E L + + G V+ Sbjct: 447 DDQVFYTHLAQKARAIDDLRAPLFKKLDDNQQTPLYTDIEVPLTRVLAAMEITGIKVNAQ 506 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 + + ++ ++ + G + ++L LF + L + T+T Sbjct: 507 TLKDMGSKLTERLADIESQIYA-AAGEEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTA 565 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 + +KL QA V + LQ+ ++ Sbjct: 566 VDVLEKLADQAPIVED----------------------------ILQYRQIAKLQSTYIT 597 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKL 376 + H Q +T + DP+ I +R + S G ++ Sbjct: 598 GLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHAGWQI 657 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVM 435 +D + +E RVLA + G++ + F+ GED++ +T R F++ ++ ++ R K + Sbjct: 658 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAV 717 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 + Y +A ++ ++ + +E+ + + EH Sbjct: 718 NFGIVYGISDY---GLAQRIHVSRAQAHEFIQ--NYFKEFPGVKKYIDDTIAFAREHGYV 772 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + I +RR +P ++ K Sbjct: 773 E-----------------------------------------TITHRRRYLPDIHAKSFS 791 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 RS R+ +NT +Q + DI+ M+ Sbjct: 792 R---------RSFA------ERTAMNTP------------------IQGSAADIIKIAMI 818 Query: 616 NAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + ++L +HDE+V E P + ++ +M S +PLK E Sbjct: 819 RMKEEIKQRQLQARMLLQIHDELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVE 874 >gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] Length = 880 Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q + DIL M+N KA ++L VHDEIV E P+ + L Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 Query: 650 -LMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 854 DTMEAAVDLA--VPLCVD 869 >gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] Length = 920 Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats. Identities = 120/660 (18%), Positives = 191/660 (28%), Gaps = 155/660 (23%) Query: 33 FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A P +D D + E + + D V HN+ +++ + Sbjct: 376 IALATGSGPAAFFDPSQLDEADERTFAEWIADPDRPKVLHNAK---GIMRVFAEHGWSVA 432 Query: 92 RWICTLVLARSNGLPS---------ALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 LA P +++ +G L + + G+ G E Sbjct: 433 GVTMDTALAAYLVKPGRRSFELDALSVEYLGRELS-PAVAADSGQ-----LAFGADDEAE 486 Query: 143 YDRNKPNHREAWRLFGEYCKG--DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 D R L + DV L E + L + G D Sbjct: 487 RDALMIKARTILDLGEAFGGRLKDVGAA-------GLLHDMELPVSELLARMERSGIAAD 539 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + Q QE + G + ++L+ LF E GL T+T Sbjct: 540 RGWLERMEQQFAAAVQHAVQEAHA-AVGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYT 598 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 + L Q M R RLR T++ G +T Sbjct: 599 TDADALAWLAGQTDHELPVIMLRHR--------------EQARLRSTVE--GLIKT---- 638 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-K 374 + SR H +Q + ++DP+ I +R + +G + Sbjct: 639 --------IAPGSRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGDGFE 690 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T ++ F+V + V + R K Sbjct: 691 SLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEMRRKIKA 750 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 M L Y A + G+ + Sbjct: 751 MSYGLAYGLSAFGLSQ---QLGITPDEA-------------------------------- 775 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 +K R + + L + E+ G RR Sbjct: 776 ------------RKLMENFFERFGGVRDYLQRVVEEARATGYTETMLGRRRY-------- 815 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 LP L + RQ RE L I Q + DI+ M Sbjct: 816 -------LP---------------DLTSDNRQ-RREMAERMALNAPI-QGTAADIVKIAM 851 Query: 615 MNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGL--PLKA 665 + K ++L VHDEIV E + L MT A GL PL Sbjct: 852 LKVDAALTGEKLSSRMLLQVHDEIVLEIAPGERERVEELVRREMTG----AFGLSAPLDV 907 >gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977] gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus] Length = 902 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 118/683 (17%), Positives = 212/683 (31%), Gaps = 165/683 (24%) Query: 16 LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAH 71 L G Y D + A D D V P L E L + H Sbjct: 339 LAVVGTYTPYDGDATAVAIASADGDGA--YIDTTT--VTPDDEAALAEWLADAARPKALH 394 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKM---EEG 126 + + A + LA P + +L+ +++ ++G Sbjct: 395 EAK---QAIHALAGRGWELGGVTSDTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDDG 451 Query: 127 KELIARF-------CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179 ++ ++ K + L R + + DV + R L L+ Sbjct: 452 EQQLSLLDEDGAGDAKAAQAQMLRARAVIDLAD---------ALDVELERIESAGL--LT 500 Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTL-NQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E + + + G VD +L NQ R D + G + ++ Sbjct: 501 DMELPVQRVLAGLESVGIAVDTDHLSSLQNQFASGIREAADAAYAVI--GKQINLGSPKQ 558 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLV 295 L+ LF E G+ T+T + + L + F + R + ++ L+ Sbjct: 559 LQVVLFDELGMPKTKKTKTGYTTDADALQTLFDKTGHPFLEHLLTHRDVTRLKVTVDGLL 618 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 +++ +DGR+ T +Q I +++P+ Sbjct: 619 KSVAADGRIHTT-------------------------------FNQTIAATGRLSSTEPN 647 Query: 356 PLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +R + G + L+ D + IE R++A ++ ++ ++AF TGEDL+ Sbjct: 648 LQNIPVRTEAGREIRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGEDLH 707 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 AR+F V +VT + R K M L Y A +A+ ++ + Sbjct: 708 SFVAARAFGVPIDEVTAELRRRVKAMSYGLAYGLSAY---GLATQLKISNDEA------- 757 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 K+ Q SR + + L + Sbjct: 758 -------------------------------------KEQMDQYFSRFGGVRDYLRAVVD 780 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q ++G RR + L SG L R Sbjct: 781 QARKDGYTSTVLGRRR------------YLPDLDSGDRL-------------------RR 809 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFN 643 E L I Q + DI+ M+ KA ++L VHDE++ E + + + Sbjct: 810 EAAERAALNAPI-QGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERES 868 Query: 644 ASMLY-HLMTSNPSWAKGLPLKA 665 L M S ++ +PL+ Sbjct: 869 LEALVRKTMGS--AYPLDVPLEV 889 >gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505] gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505] Length = 946 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 95/504 (18%), Positives = 155/504 (30%), Gaps = 129/504 (25%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E + + D G VD A+ H +D R E G + ++ Sbjct: 544 TDLEMPVAATLTVMEDAGIAVDDAVLHARQTELDA-RVTHAAEGAYAAAGRELNLSSPKQ 602 Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLV 295 L+ LF E + T+T + L + F + R A+ + L Sbjct: 603 LQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQTVEGLR 662 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 +A+ +DGR+ T Q I ++DP+ Sbjct: 663 KAIQADGRIHTT-------------------------------FQQTIAATGRLSSTDPN 691 Query: 356 PLQIISD-----CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I + +R EG + L+ AD + IE R++A ++ +Q ++AF +GEDL+ Sbjct: 692 LQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAFRSGEDLH 751 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 A + VT QR+ K M L Y +A G++ A L Sbjct: 752 RYVAALVHGIEVEDVTAQQRSHVKAMSYGLAYGLSTF---GLARQLGIDNAEAADLRN-- 806 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +R ++ + L E Sbjct: 807 ------------------------------------------AYFARFGKVHDYLESVVE 824 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 Q +G RR LP L + RQ R Sbjct: 825 QARRDGYTETMFGRRRY---------------LP---------------DLTSDNRQ-RR 853 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PDTDEF 642 E L I Q + DI+ + M++ A I+L +HDE++ E P E Sbjct: 854 EMAERAALNAPI-QGSAADIVKKAMIDVDSALREQALTSRILLQIHDELLIEVAPGEAEA 912 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 ++L M +PL Sbjct: 913 VENLLKEQMGGAAE--LSVPLDVA 934 >gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] Length = 880 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q + DIL M+N KA ++L VHDEIV E P+ + L Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 Query: 650 -LMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 854 DTMEAAVDLA--VPLCVD 869 >gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 880 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 107/618 (17%), Positives = 196/618 (31%), Gaps = 142/618 (22%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILT-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q + DIL M+N KA ++L VHDEIV E P+ + L Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 Query: 650 -LMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 854 DTMEAAVDLA--VPLCVD 869 >gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 82/517 (15%), Positives = 154/517 (29%), Gaps = 136/517 (26%) Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210 G + R ++ L L E L + + G+ VD + Sbjct: 421 WAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKE 480 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNK 267 ++ + KL+ ++ + G + ++L LF + L + T+T VL Sbjct: 481 IESKLLKLESQIYQIA-GEWFNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELY 539 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + RM + + Sbjct: 540 DKHDIIPLILDYRMYTKILTT------------------------------YCQGLVQA- 568 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 P R H Q T +++P+ I +R + EG L+ AD + Sbjct: 569 INPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYS 628 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA ++ ++ + AF+ D++ T A F V +QVT R+ K + + Y Sbjct: 629 QIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYG 688 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 ++ ++ A + Sbjct: 689 ISDY---GLSRDIKISRKEAAEFIN----------------------------------- 710 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + +K+ +V E L + ENG + R+ +KN Sbjct: 711 ------RYFEKYPKVKE---YLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKN------ 755 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG- 621 R+ R +N+ +Q + DI+ M+ K Sbjct: 756 --LRNYA------ERIAMNSP------------------IQGSAADIMKIAMIRVYKKLK 789 Query: 622 -----YDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652 I+L VHDE++ E+P + E ++ M Sbjct: 790 ENNLKSRIILQVHDELLIESPYEEKEIVKEIVKSEME 826 >gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1] gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC] Length = 869 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 103/585 (17%), Positives = 186/585 (31%), Gaps = 76/585 (12%) Query: 28 VCVILFAFGFD-DHPVELWDC--VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 + L D V D D V+ LK+ + D +N + LK Sbjct: 324 PSLTLMGVALACDEQVYYVDIEHAQDDVITP-LKDFFKRKDTEFYGYNIKRDHHALK--- 379 Query: 85 NLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 N I I L LA G + + + L + GKE Sbjct: 380 NAGIHIDNITLDLALAEHLINGGAKISYQTLLVDHGLMESAGKYGKEWGQL--------S 431 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE------PLSSKEQELWYLDQTINDR 195 L P + FGE+ + + + + L+ + E L + TI Sbjct: 432 LPILKSPAKPAEY--FGEFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLENVLFTIERN 489 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +DV L + + E L ++ +L G + + ++L L+ + GL D Sbjct: 490 GMPLDVEDLQELERTLSEELAILTDDIYTLA-GASFNIKSPKQLSDVLYNKLGLTPIDKA 548 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315 +T VL + ++ F + Sbjct: 549 RSTKAEVLEALLGEHEIVEKILA-------------------------------FRAIEK 577 Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI- 369 P Q P SR H +Q+ T DP+ I +R Sbjct: 578 LLSTYVKALPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFRD 637 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 + + AD + IE R LA ++ ++ AFE+ ED++ T ++ F+V +VTK QR Sbjct: 638 TRQNNYFLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQR 697 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 K + + Y A ++ ++++ L+ + + F Sbjct: 698 MQAKTVNFGIIYGQQAY---GLSKILKISVSEAQKLIDA--YFDRYPAVARFIDETISQA 752 Query: 490 PEHAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548 E+ +G ER+ W + +SR + A I+ A + + Sbjct: 753 CENLRVKTLLGR--ERIIDNWTEFSNSRAAS----GRLAVNTRIQGSAAELIKLAMLQLA 806 Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 ++K K ++L L++ + + T R + Sbjct: 807 DALEKRKLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAMI 851 Score = 39.0 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 6/44 (13%) Query: 597 LTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVC 634 +Q + +++ M+ A ++L +HDE++ Sbjct: 785 AVNTRIQGSAAELIKLAMLQLADALEKRKLRSRMLLQIHDELIF 828 >gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 914 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 95/524 (18%), Positives = 187/524 (35%), Gaps = 63/524 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + + D+ +++N KA NL I +++A L S+ + + Sbjct: 401 VVNFISQLDIKFISYN-------FKALLNLGISFKSMYMDMMIAYH--LISSQTKIDPII 451 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD----VTVTREIF 172 ++ E K+ A F K + G D + +++ Sbjct: 452 AITEYSKLEPKDFKATFGKVNVELITTQDFSKYLSD--ISIGILAIYDELNYLLKKEDLY 509 Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 K L E L + + +G +DV + +D E ++++ + G + Sbjct: 510 KVL---MENEMPLIPVLSLMERKGIEIDVQYFKNYSVELDKELLRIEKAIYEEA-GEEFN 565 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF++ L T+T + + L + Sbjct: 566 INSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNI---------------- 609 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 R L + ++ P SR H +QI T +S Sbjct: 610 -----------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTSFNQIGTATGRLSSS 657 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 DP+ I +R IA EGK L+ D + +E RVL M+ ++ ++A+ +D Sbjct: 658 DPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 717 Query: 408 LYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 L+ T R FN+A ++ V+++QR I K++ ++ Y +A + + + + Sbjct: 718 LHDLTARRIFNLADSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYI 774 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 K E++ F + + E EH G K+ S+ + ++ + Sbjct: 775 K--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAER 827 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 T+ G A K+ V + + KDK ++ L+L L++ Sbjct: 828 MAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIF 871 >gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] Length = 945 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 105/634 (16%), Positives = 189/634 (29%), Gaps = 140/634 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V V N ++ +L I + T+V++ + Sbjct: 417 LKPLLESDAVLKVGQNIKYDLNILARQ---GIMVSPIDDTMVMSFCLDAGRS------ET 467 Query: 117 KLSSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 L+ M+E E L+ K + + Y D VT + + Sbjct: 468 GLAGHGMDELSERHLLHTTMKFKELCGTGKKAISFAEVPLADATRYAAEDADVTWRLHRL 527 Query: 175 LEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +P + E + L + + G VD L+ + +L+ + Sbjct: 528 FQPRLAGEGGTRIYQKVDRPLIPVVAMMERNGIKVDRERLSGLSTEFAAQIARLEGVIHE 587 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQAIQVFNNR 280 G+ + ++L LF + G +T Q VL + + Sbjct: 588 KC-GMSFTIGSPKQLGEVLFDKLGYKGGKKGKTGQYSTDQSVLEGLAAQGAEVATLVLEW 646 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + S+ P R H Sbjct: 647 RQLSK------------------------------LKSTYTDALQAAINPHTGRVHTSYS 676 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 + +++P+ I I +R +A G L+ AD + IE R+ A MA Sbjct: 677 LVGAQTGRLSSNEPNLQNIPIRTEIGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMADV 736 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF GED++ T F V +D R K + A+ Y + Sbjct: 737 PALKEAFAAGEDIHARTAMEMFGT----VDRDTRGRAKTINFAILYGIS---RWGLGGRL 789 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + +A+ E P +I E V+ Sbjct: 790 GVSAD----------------EAQAMIDRYFERFP---GIQRYIHETLESVR-------- 822 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + + +T+ K R S ++ R G+ Sbjct: 823 ---------ERGYSETLFGRKTWFPRI---------------------SSKNQAERQ-GS 851 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635 R+ +N + G + I +A++R + + A ++L VHDE+V E Sbjct: 852 ERAAINAPIQ---------GTSADIIKRAMAR--MMPALTEAGLGHVRMLLQVHDELVFE 900 Query: 636 TPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAE 666 P D E ++ +M + A +PL E Sbjct: 901 LPQGDVEAAKPVIERVMATAAEPAVKLSVPLGVE 934 >gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] Length = 885 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 102/639 (15%), Positives = 196/639 (30%), Gaps = 155/639 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 Q L+ LE+ V + L L I + ++LA Sbjct: 364 QPLQTLLEDQAVNKNVFDLKRTIVGLHR---LGIKANNINYDMLLASYLVNNEN------ 414 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +S + E +L + + K + F + + Sbjct: 415 ----NSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDEEIFFNHLAGKVLAIEALKPTL 470 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L+ L+ EQ+ Y + + G D + L T+L+ ++ L Sbjct: 471 LKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRLTELEADIY-L 529 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + L T+T VL K +P +V + R Sbjct: 530 EAGERFNINSPKQLGQILFEKLELPPIKKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQI 589 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + + L++ + DG R H Q Sbjct: 590 AKIQSTY-VKGLLDVIQPDG-------------------------------RVHTRYQQT 617 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGE 395 +T + DP+ I +R I S +G D + +E RVLA ++G+ Sbjct: 618 LTATGRLSSVDPNLQNIPVRLEEGKKIRKAFIPSNKDGYIF-SCDYSQVELRVLAHVSGD 676 Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + +AF+TG D++ T + F++ P +VT + R K + + Y ++ Sbjct: 677 ENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTTNMRRHAKAVNFGIVYGISDY---GLSKN 733 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + + + + + A E ++ T Sbjct: 734 LGISRKQAKEFIDN------YFEQYPKIKDYMDKEINFAREKGYVET------------- 774 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 I +RR +P ++ K + RS Sbjct: 775 ------------------------IMHRRRYLPDIHAKNF---------NVRSFA----- 796 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 R+ +N+ +Q + DI+ M+N K +++ V Sbjct: 797 -ERTAINSP------------------IQGGAADIIKIAMINMQKKLDELNLKSKMLIQV 837 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 HDE++ + P + + +M + +PL A+ Sbjct: 838 HDELIFDVPADELETIKKVVPEVMQNAVH--LDVPLVAD 874 >gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] Length = 909 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 169/561 (30%), Gaps = 66/561 (11%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 + GI Y E+ + A + V L+ C + Q + + + + E Sbjct: 349 KEAGISIYKENDA-MWVALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 407 Query: 77 RTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 + + + A N L S + A S + KELI + Sbjct: 408 VKEHLSHLTIHEMTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSKKELIDKKHP 467 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLD 189 T L D K G + + +L L E + Sbjct: 468 MVTDGVLSDAGKKIM-------GYEAYISREAIQPLSDKLTELEMMDLYREIEIPTMFAL 520 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + RG VD + +L + + G + ++L LF L Sbjct: 521 HDMEVRGIHVDSKALKGYGDQLVGRIEELQESIYKEA-GEEFNINSPKQLGVVLFDHMKL 579 Query: 250 HLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+T VL + L P + R + + L + D R+ Sbjct: 580 EGAKKTKTGYSTSVEVLEKIEHLYPIIPMILEYRQLTKLKSTYA-DGLANFIQDDQRI-- 636 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361 H + +Q IT +++P+ I + Sbjct: 637 -----------------------------HGKFNQTITATGRISSTEPNLQNIPIRMELG 667 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + EG + AD + IE RVLA ++ ++ + A+E +D++ T + F + Sbjct: 668 RAIRKVFLPEEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPM 727 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT QR K + + Y A + ++ + + + F Sbjct: 728 DEVTSTQRRDAKAVNFGIIYGLSAFGLSQ---DLKISRKQAQEYID--RYFAMYPRVKEF 782 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + E D ++ T R++ K S + N + + G A Sbjct: 783 L----DGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQ-RNFGERVAMNSPIQGTAADII 837 Query: 542 KRRDVPLVYMKKDKNNLILML 562 K V + K+K +L Sbjct: 838 KIAMVRVNMKLKEKQMKSRLL 858 >gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] Length = 875 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 105/647 (16%), Positives = 209/647 (32%), Gaps = 143/647 (22%) Query: 35 FGFDDHPV-------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNL 86 + D+ PV +++ + + + KE E+ DV F+ + Sbjct: 328 YYVDNEPVIFAIYTDKVY-ITRNVDIVKSFKEEFESKDVNK----LSFDIKPCIYHLMRY 382 Query: 87 DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 I I +V+ PS + K+ + +++ + +T + Sbjct: 383 GIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKSLEDITGKGRSKKTILESDE 442 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + N+ + +F + E + E L + + G CV Sbjct: 443 KEIDNYIVKYMMFTNKL-YEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 + ++ + E ++ +E L G + ++L LF + L + +T T Q Sbjct: 502 VEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R A + ++ +V+ + DG++ Sbjct: 561 VLEALSGRHEIIDYILRYRTIA-KLKTTYIDGMVDLIKEDGKI----------------- 602 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 H Q I +++P+ I +R + S+G L Sbjct: 603 --------------HTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSQGSVL 648 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RVLA +A ++ + AF+ G D++ T + F V +VT QR+ K + Sbjct: 649 LDADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRSNAKAVN 708 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y G + + E EN+ +E + +ED Sbjct: 709 FGIVYGIGDYSLS---KDLHITRKEAK------------EYIENYLDTYKEI--KQYMED 751 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + +TI ++RR +P + Sbjct: 752 IVAIGK----------------------EKGYVETI-------MKRRRYIPEL------- 775 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-- 614 ++ R G R LNT +Q + DI+ M Sbjct: 776 -------KSKNYNVRSFGE-RVALNTP------------------IQGSAADIIKVAMVK 809 Query: 615 ----MNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656 +N ++L VHDE++ + P+ + E ++ +MT Sbjct: 810 FYNRLNEENLKAKLILQVHDELIVDCPEDEREKVLEIMKDVMTHAVD 856 >gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873] gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873] Length = 881 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 97/636 (15%), Positives = 200/636 (31%), Gaps = 179/636 (28%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 E+ ++ ++H+ VL+ DI +I +A PS + + L Sbjct: 384 FEDKNIKKISHDIKNVYVVLRKY---DIDAKNFIFDTKIASYLLEPSKSDYILREIILEK 440 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 + N + E ++ YC EI+++L+ Sbjct: 441 LSI----------------------NIDDSDEECKIKETYCIK------EIYEKLQKEIK 472 Query: 181 K----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E L + ++ G+ VD + + E L++E+ L G Sbjct: 473 EANMEELFYNVELPLTKVLASMECEGFKVDKDRLTEIGEKFKAEIKMLEKEIHKLA-GED 531 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + + ++L LF + L + T+T VL K P ++ + R + Sbjct: 532 FNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIDYRQITKLDS 591 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L ++ D + H +Q +T Sbjct: 592 TY-VEGLKHVIDED-------------------------------GKIHSSFNQTVTTTG 619 Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R +A+ E + AD + IE RVLA +A ++ + A Sbjct: 620 RLSSTEPNLQNIPIKHEMGREIRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDA 679 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ +D++ T + F V +VT R+ K + + Y GA + ++ Sbjct: 680 FKHHKDIHTITASEVFRVPVEEVTPLMRSNAKAVNFGIVYGIGAFSLS---KDINVSRKE 736 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T + + + + + + D F+ Sbjct: 737 AKEYIDT--YFSRYPNVKKYIDDIINKSEQ----DGFV---------------------- 768 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 I ++R +P + R+ + R G R +N Sbjct: 769 ---------------TTIMNRKRYIPEI--------------QSRNRIVRSFGE-RLAMN 798 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVC- 634 T +Q + DI+ M++ + ++L VHDE++ Sbjct: 799 TP------------------IQGSAADIIKLAMVHVYEELIKRNLKSTLILQVHDELILN 840 Query: 635 ----ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 E + + + +M +PL+A+ Sbjct: 841 VYKDELEEVKQMVVEKMEGVMNLL------VPLEAD 870 >gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 887 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 85/514 (16%), Positives = 157/514 (30%), Gaps = 130/514 (25%) Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + LE + E L + + D G VD + ++ L Sbjct: 475 ELSDIESLELYTDLEIPLITILAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAG 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF L T+T + L + F + A R Sbjct: 535 DPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKKTDHPFLQHLLAHREY 594 Query: 288 VL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L L+ ++ DGR+ T Q + Sbjct: 595 SKMKSTLEGLIRSVGGDGRIHTT-------------------------------FKQTVA 623 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I +RS + EG + L+ AD + IE RV+A ++ + Sbjct: 624 STGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGL 683 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++A++ GEDL+ ++ F+V +VT + R K M L Y + +A+ + Sbjct: 684 IQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSY---GLAAQLDIP 740 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 K R Sbjct: 741 QGEA--------------------------------------------KSIMDSYFERFG 756 Query: 519 ELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + N L ++ ++G + + +RR +P + Sbjct: 757 GVKNYLRSVVDEARKDGYTSTLFGRRRYLPEL---------------------------- 788 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIV 633 T+T ++ RE L I Q + DI+ M+ + ++L VHDE+V Sbjct: 789 ----TSTNRIARENAERAALNAPI-QGTAADIIKVAMVRVNRRLDSLKSRVLLQVHDELV 843 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGL--PLKA 665 E + + +++ A L PL+ Sbjct: 844 LEVAPGE---LEEVSRIVSEEMDGAISLRVPLEV 874 >gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] Length = 880 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 109/621 (17%), Positives = 201/621 (32%), Gaps = 148/621 (23%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + L LE T+T VL + P ++ R + + L + + Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILAYRQITKLQSTY-VIGLQDYIL 600 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DG++ H Q +T + DP+ I Sbjct: 601 ADGKI-------------------------------HTRYVQDLTQTGRLSSVDPNLQNI 629 Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T Sbjct: 630 PIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTA 689 Query: 414 ARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 R F + A VT + R K + + Y +++ G+ + T Sbjct: 690 MRVFGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKTYIDT---- 742 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + + + EN A + ++ Sbjct: 743 --YFERYPRIKAYMENVVREAKDKGYVE-------------------------------- 768 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 -----TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP--------- 799 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646 +Q + DIL M+N KA ++L VHDEIV E P+ + Sbjct: 800 ---------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKK 850 Query: 647 LYH-LMTSNPSWAKGLPLKAE 666 L M + A +PL + Sbjct: 851 LVKDTMEAAVDLA--VPLCVD 869 >gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] Length = 922 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 98/519 (18%), Positives = 172/519 (33%), Gaps = 142/519 (27%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 RE++ L E L + + RG +D A V E +L E+ + G Sbjct: 514 RELYNTL------ELPLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELDRLTAEVYA-AAG 566 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + R ++L LF L T+ +T Q+ L + R + Sbjct: 567 TTFNIRSAQQLGDVLFKTLNLPSPRKTKGGQASTSQQTLEKLAGRHAVVDSILQFR-KLE 625 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L+ L ++ G R H +Q T Sbjct: 626 KMRSTYLDPLPRLVDGQG-------------------------------RIHTTFNQKAT 654 Query: 345 HLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I + +R+C IA G+ LV AD + +E RVLA M+ + L Sbjct: 655 ATGRLSSSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALL 714 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF GED++ T A +++ +V+ DQR K + L Y GA QK+ ++ Sbjct: 715 DAFRQGEDIHARTAALIYDLQAGEVSPDQRRNAKTINFGLIYGMGA---QKLGQELKIST 771 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +A+ F E + Sbjct: 772 ----------------AEAKEFITRYFERLT-------------------------GLKA 790 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + ++ + + +RR +P + + + R Sbjct: 791 FYENVEATAKR--QGYVTTLGGRRRLLPDILSANGQAFALAR---------------RQA 833 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIV 633 +NT ++Q + DI+ M+ + ++L VHDE++ Sbjct: 834 INT------------------VIQGSAADIIKLAMLAVAHDAELRRMDARLLLQVHDELL 875 Query: 634 CETPD-TDEFNASMLYHLMTSNPSWAKG-----LPLKAE 666 ETP+ T E + + LM+S A G +PL + Sbjct: 876 LETPEATAEAAGARVAALMSSV---APGGETLSVPLVVD 911 >gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] Length = 886 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 105/622 (16%), Positives = 196/622 (31%), Gaps = 150/622 (24%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K I + + + VL GL + L LS+ + E L + Sbjct: 369 FKKVLEQPIATYDFKRSKVLLSHLGLDLPAASYDARLANYLLSTVEDNEMATLARLYTTI 428 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEP------LSSKEQE 184 +T E +Y + + + V V + + +L + E Sbjct: 429 PLDTDEVVYGKGVKRAVPDKAVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELP 488 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ + + V +L QE+ + G V + ++L LF Sbjct: 489 LANVLAKMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILF 547 Query: 245 LETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + L L T+T VL + P ++ + R + + L + + Sbjct: 548 EKMQLPLHLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTY-VIGLQDYIM 606 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR H Q +T + DP+ I Sbjct: 607 ADGR-------------------------------IHTRYLQDLTQTGRLSSVDPNLQNI 635 Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S + L+ +D + IE RVLA ++G++ + AF+ G D++ +T Sbjct: 636 PIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 695 Query: 414 ARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 R F + P VT + R K + + Y +++ G+ + T Sbjct: 696 MRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDF---GLSNNLGIPRKQAKAYIDTY--- 749 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 R + + + + + Sbjct: 750 -----------------------------------------FERYPGIKDYMERVVREAK 768 Query: 533 ENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + G + ++RR +P + + R R R+ +N+ Sbjct: 769 DKGYVETLFKRRRQLPDI--------------NSRQFNVRSF-AERTAINSP-------- 805 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNAS 645 +Q + DIL M+N +A ++L VHDEIV E P+ + Sbjct: 806 ----------IQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAAVK 855 Query: 646 ML-YHLMTSNPSWAKGLPLKAE 666 L M S + A +PL+ + Sbjct: 856 ELVKETMESAVNLA--VPLRVD 875 >gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] Length = 1040 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 97/499 (19%), Positives = 160/499 (32%), Gaps = 117/499 (23%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + ++R+ L E L L + + D G VD L +Q + E + + Sbjct: 624 ILTEQVKYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTETAAFE 683 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L+ LF + GL T+T + ++L F + Sbjct: 684 -AIGREVNLSSPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYF 742 Query: 285 RSAVLKLN---TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R L L + + DGR+ T Q Sbjct: 743 RDRSKLLQIVRNLGDRIAPDGRIHTT-------------------------------FGQ 771 Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 + + DP+ I + +R IA L+ AD + IE R++A ++G+ Sbjct: 772 TVAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGD 831 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF++GEDL+ + A F VAP VT QR K L Y A +A Sbjct: 832 EGLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAF---GLAGQL 888 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ HL++T S Sbjct: 889 RISQGEAKHLMETYF--------------------------------------------S 904 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + + L + G RR LP R+ N Sbjct: 905 RFGAVRDYLEHIVSEARRVGYTETMWGRRRY---------------LPGLRATNRVVAEN 949 Query: 576 N-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R+ LN + G + + QA+ R + M A G I+L +HDE+V Sbjct: 950 ARRAALNAPIQ---------GSAADLMKQAMLR---VDAAMAAAGLGSRILLQIHDELVF 997 Query: 635 ET-PDTDEFNASMLYHLMT 652 E P + ++ MT Sbjct: 998 EVAPGEVDALRRVVTEAMT 1016 >gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 169 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 6/167 (3%) Query: 1 MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58 M + ID ET S +L + G+ +YA+ D ++LF + D PV++ D +P + Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60 Query: 59 EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 EAL+N ++ A N+ FER L + W C+ V + + GLP +L+ VG L L Sbjct: 61 EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYC 161 QK+ GKEL+ F CK RN P H + W+ F +Y Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYN 167 >gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] Length = 880 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 110/619 (17%), Positives = 199/619 (32%), Gaps = 144/619 (23%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQSKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647 +Q + DIL M+N KA ++L VHDEIV E P DE A ++ Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVP-NDELTAIKKLV 852 Query: 648 YHLMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 853 KDTMEAAVDLA--VPLCVD 869 >gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] Length = 874 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 88/638 (13%), Positives = 203/638 (31%), Gaps = 142/638 (22%) Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARSNGLP 106 +P + A+ + A++ E+ + A + DI + + +A P Sbjct: 344 IPTEV--AINSDMFKKWANDEKNEKWIFNAKQAIVSLGWNDISLRGVTFDIQIASYLIDP 401 Query: 107 S--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 S + + + + S ++ + + KG+ + + H K + Sbjct: 402 SASSHEMADISNRKRSYTVKSDEAVYG---KGKKRQVPEEEIVAQHLVRKAAAINVLKEE 458 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + ++ E E L + + G ++ + + + + + +++E+ Sbjct: 459 LESELKENEQFELFKDLEMPLSIVLGHMEMNGISINKEELLQMGETLSDKLSTMEKEIHE 518 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L G+ + ++L LF + L + T+T VL + ++ R Sbjct: 519 LA-GVEFNINSPKQLGEILFDKLQLPVVKKTKTGYSTSADVLEQLRDKHEIVEKILLYRQ 577 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ ++ + + H +Q Sbjct: 578 L-GKLNSTYIEGLLKVIHQ------------------------------KSGKIHTIFNQ 606 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 +T +++P+ I +R + E + AD + IE RVLA ++ + Sbjct: 607 ALTQTGRLSSTEPNLQNIPIRLEEGRKIRRAFVPERENAVIFAADYSQIELRVLAHISND 666 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + AF+ D++ T F+V+ +VT R K + + Y + Sbjct: 667 ENLTNAFKENMDVHTKTAMDVFHVSADEVTSLMRRTAKAVNFGIVYGISDYGLSQ---NL 723 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + D+ + E+ E A + ++ Sbjct: 724 GITRKEAKKFID------RYFDSYPGVKEYMESIVEEARVNGYV---------------- 761 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + +RR +P + + + RS Sbjct: 762 ---------------------TTMLHRRRYLPEITSRNF---------NLRSFA------ 785 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD--IVLTVH 629 R+ +NT +Q + DI+ + M+ + G ++L VH Sbjct: 786 ERTAMNTP------------------IQGSAADIIKKAMVKMEEEMKEKGLKSTLLLQVH 827 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E + L +M + + A +PLK + Sbjct: 828 DELIFEVVQEEIETMKELVPKVMENAVNLA--VPLKVD 863 >gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus] gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus] Length = 943 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 97/639 (15%), Positives = 189/639 (29%), Gaps = 155/639 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L+ LEN V + N F ++LK +I + I ++L L Sbjct: 420 LQPILENPAVVKIGQNMKFNYSLLKRH---NINLSGKIFDVILEFYI-----LYGTTNYQ 471 Query: 117 KLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + +E I F + + + + N + Y + ++ + L Sbjct: 472 NIKRFLNKETFNSILNFQQSYDNYNNYIVKEIKNIYQE----SLYAIQLILAIFDLHQIL 527 Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 P E L + I G +D L + + ++V L + Sbjct: 528 WPQLYSNDKLKKIFQEIEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQ 587 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNR 280 L G + +++L+ L+ + L + + +T + VL P + R Sbjct: 588 LA-GTSFNLDSIKQLQEILYKKQKLPILKKTPSGSPSTNEEVLKKLSHKYPIPKIILKYR 646 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 S+ +R H + Sbjct: 647 SL-------------------------------SKLKSTYTNKLISMVNTESNRIHTSYN 675 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q T +++P+ I +R IA +V AD + IE R++A ++ + Sbjct: 676 QTRTATGRLSSANPNLQNIPNRNHDGRKIRQAFIAPSHSVIVSADYSQIELRIMAHLSRD 735 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + F +G+D++ TT + F + VT +QR K + L Y A K S T Sbjct: 736 FKLINDFLSGKDIHTTTASEIFVTSLNLVTNEQRHQAKTINFGLIYGMSAFGLSKQLSVT 795 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 C +K + Sbjct: 796 -----------------------------------------------CYEAQKYVDRYFQ 808 Query: 516 RVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 R + + + + G + + ++ +P +Y K + G Sbjct: 809 RYPGVMQYIQHIKDNVYKYGYVSTLEGRKLYLPNIYSKNLS---------------KKKG 853 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628 R+ +N Q + DI+ + M++ +++ V Sbjct: 854 AERAAINAPM------------------QGSAADIIKKAMISINYWLKQDDIPVQMIMQV 895 Query: 629 HDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAE 666 HDE+V E + + + LM + +PLK + Sbjct: 896 HDELVFEVQNNFIDTAIKQIKKLMEEC--FILDVPLKVD 932 >gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] Length = 887 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 85/514 (16%), Positives = 157/514 (30%), Gaps = 130/514 (25%) Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + LE + E L + + D G VD + ++ L Sbjct: 475 ELSDIESLELYTDLEIPLITILAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAG 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L+ LF L T+T + L + F + A R Sbjct: 535 DPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKKTDHPFLQHLLAHREY 594 Query: 288 VL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 L L+ ++ DGR+ T Q + Sbjct: 595 SKMKSTLEGLIRSVGGDGRIHTT-------------------------------FKQTVA 623 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I +RS + EG + L+ AD + IE RV+A ++ + Sbjct: 624 STGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGL 683 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++A++ GEDL+ ++ F+V +VT + R K M L Y + +A+ + Sbjct: 684 IQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSY---GLAAQLDIP 740 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 K R Sbjct: 741 QGEA--------------------------------------------KSIMDSYFERFG 756 Query: 519 ELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + N L ++ ++G + + +RR +P + Sbjct: 757 GVKNYLRSVVDEARKDGYTSTLFGRRRYLPEL---------------------------- 788 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG----YDIVLTVHDEIV 633 T+T ++ RE L I Q + DI+ M+ + ++L VHDE+V Sbjct: 789 ----TSTNRIARENAERAALNAPI-QGTAADIIKVAMVRVNRRLDSLKSRVLLQVHDELV 843 Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGL--PLKA 665 E + + +++ A L PL+ Sbjct: 844 LEVAPGE---LEEVSRIVSEEMDGAISLRVPLEV 874 >gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] Length = 876 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 91/567 (16%), Positives = 169/567 (29%), Gaps = 67/567 (11%) Query: 27 DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86 ++ F D H V + + P+ L E LEN +++ L Sbjct: 330 TADILKFGIQADGHFV-VINAEQINDYPE-LVEWLENDQTRKRVYDAK---KTYAEAHRL 384 Query: 87 DIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 +I I ++LA P ++ V + + E + + KG + D Sbjct: 385 NIDIKNVSFDIMLASYILDPSRSIDDVYSV--VHNYGQNYVAEEVNIYGKGRKRQIPEDE 442 Query: 146 NKPNHREAWRLFGEYC---KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + + D E F +L+ S E L + + + G DV Sbjct: 443 VLDTYIASILDAISESTPIMYD---QLEEFNQLDLFESLELPLARILGEMEELGIYTDVD 499 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR- 261 + + + + L + G + ++L LF L + T+T Sbjct: 500 ELKEMEKEIQGKLDTLITRIHD-AAGEDFNINSPKQLGVVLFENLKLPVIKKTKTGYSTA 558 Query: 262 --VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 VL + P + R S+ Sbjct: 559 VDVLEQLQGEHPIIDDILEYRQL-------------------------------SKLQST 587 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV-IASEG 373 + R H +Q + + DP+ I +R A G Sbjct: 588 YIEGLQK-VIQNDHRIHTHFNQTLAQTGRLSSVDPNLQNIPVRLEEGRRIRKAFKPAEPG 646 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 ++ AD + IE RVLA + ++ +KAF G D++ T + F V P +V R K Sbjct: 647 NVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMRRQAK 706 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y + + G+ + ++ D+ + + + A Sbjct: 707 AVNFGIVYGISDYGLSQ---SLGITRKAAKQFID------DYLDSFPGVKQYMSDIVKDA 757 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 ++ T R ++ SR + + T G A K V K Sbjct: 758 KAKGYVETLLHR-RRYIPDITSRNFNRRSFAERTAMNTPIQGSAADIIKLAMVNFDKEIK 816 Query: 554 DKNN-LILMLPSGRSLVYRDVGNNRSY 579 +K+ L+L L++ Sbjct: 817 NKDFHAHLLLQVHDELIFELPEEEVEA 843 >gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] Length = 880 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 109/619 (17%), Positives = 198/619 (31%), Gaps = 144/619 (23%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRTTLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDKHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647 +Q + DIL M+N KA ++L VHDEIV E P DE A ++ Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVP-NDELTAIKKLV 852 Query: 648 YHLMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 853 KDTMEAAVDLA--VPLCVD 869 >gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673] gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673] Length = 890 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 93/487 (19%), Positives = 158/487 (32%), Gaps = 127/487 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E + Y + + G CV + + V+ KL+QE+ T + ++L Sbjct: 492 DIEMPVIYSLYHMQEEGICVRREELRCYGERLKVQIDKLEQEIYQDT-ETEFNINSPKQL 550 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + T+T T VL P +V + R + + L Sbjct: 551 GEILFDRMKMPGGKKTKTGYSTAADVLEKLAPEYPVVRKVLDYRQLTKLKSTYA-DGLAA 609 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DGR+ H +Q IT +++P+ Sbjct: 610 FIREDGRI-------------------------------HGTFNQTITATGRISSTEPNL 638 Query: 357 LQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I + +R + EG L+ AD + IE RVLA M+G++ + A+ ED++ Sbjct: 639 QNIPVRMELGREIRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAI 698 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T + F+V +VT QR K + + Y A + S + Sbjct: 699 TASEVFHVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISR--------------- 743 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 ++A + E +PE F+ E K Q + +T Sbjct: 744 ----KEALEYINRYFETYPE---VKKFLDHLVELGK-----------------EQGYVET 779 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + +RR +P + K N + R +N+ Sbjct: 780 -------MFGRRRPIPEL---KSANFMQRSF------------GERVAMNSP-------- 809 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET-PDTDEFNA 644 +Q + DI+ M+ K +VL VHDE++ ET D E Sbjct: 810 ----------IQGTAADIIKIAMIRVDQRLRKEKLRSRLVLQVHDELLIETWTDELEKVQ 859 Query: 645 SMLYHLM 651 +L M Sbjct: 860 KVLEEEM 866 >gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7] gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7] Length = 886 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 71/441 (16%), Positives = 149/441 (33%), Gaps = 63/441 (14%) Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVD 200 E ++ ++ + R + K+L K E L + + G V+ Sbjct: 446 PEDKKVTYDHVARKIKAIRILSKQLSDNLEKNVQTKLFDEMELPLSIVLAEMELTGVKVN 505 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + + + ++Q + L G + ++L LF + G + T+T Sbjct: 506 DKRLMEMKEEFAIRLNDIEQRVYELA-GEKFNLNSPKQLGVILFEKMGYPVVKKTKTGYS 564 Query: 261 R---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317 VL K+ P + R A + + L++ ++ + Sbjct: 565 TAVDVLEQLKEQAPIVEHILEYRQIAKIQSTY-IEGLLKVIDKE---------------- 607 Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS- 371 + H Q I + DP+ I +R + S Sbjct: 608 --------------TGKIHTRYMQTIAQTGRLSSVDPNLQNIPIRLEEGRKIRQAFVPSH 653 Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRA 430 EG K+ +D + IE RVL ++ ++ +AF G+D++ +T R F + +P +V+ + R Sbjct: 654 EGWKIFASDYSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSPEEVSSEMRR 713 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K + + Y + G++ + T + + + E+ Sbjct: 714 RAKAVNFGIVYGISDYGLSQ---NLGISRKEAQRFIDT------YFEKYPGVKTYMEDIV 764 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 A + F+ T R ++ + +SR L + + T G A K + + Sbjct: 765 REAKDKGFVETLFHR-RRYLPEINSRNFNLRSFAERTAINTPIQGSAADIIKIAMIKMDE 823 Query: 551 MKKDKNNLI-LMLPSGRSLVY 570 K+ ++L L++ Sbjct: 824 RLKESKLKATMLLQVHDELIF 844 >gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] Length = 932 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 92/501 (18%), Positives = 158/501 (31%), Gaps = 121/501 (24%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L + ++ G VD A ++ + + +L + L G + + Sbjct: 531 TKIEMPLVRVLASMERAGMYVDPARLAAQSEELSGQIAELSDRIRELAGGEEFNLSSPMQ 590 Query: 239 LKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 L LF + GL L +T T +VL K + R R + L+ Sbjct: 591 LSRVLFDKLGLPTAGLKKTQRGYYSTNAKVLEDLAKDYEIVRLILEYRERTKIKSTY-LD 649 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 TL +DGR+ T +Q IT +S Sbjct: 650 TLGALRETDGRVHTT-------------------------------YNQTITATGRLSSS 678 Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I + V+ EG V D + IE R+LA ++G++ + AF GED Sbjct: 679 NPNLQNIPTRSELGHAVKKAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVGAFNEGED 738 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + T AR F V +VT R+ K + + Y A GL+ + + Sbjct: 739 FHAETAARVFGVPVEEVTPQLRSRAKAVNFGIVYGQQA---------YGLSQALDIPMAE 789 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + A R + A + + T Sbjct: 790 AREMIDAYFRAYPGVRTYLDETVAFAKQTGYAET-------------------------- 823 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + +RR +P L +P+ R R+ +N + Sbjct: 824 -----------MYGRRRPIPE-----------LRVPAQRMF------GERTAMNHPMQ-- 853 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASM 646 G + I A+ R + ++L VHDE+ E P + + +M Sbjct: 854 -------GSAADIIKIAMVR---VAERLRTEGFAAKMILQVHDELDFECPVGEVDALVAM 903 Query: 647 LYHLMTSNPSWAKGLPLKAEG 667 + M +PL A+ Sbjct: 904 VREEMEGVAQ--LRVPLIADA 922 >gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833] gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833] Length = 893 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 101/612 (16%), Positives = 173/612 (28%), Gaps = 149/612 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + AH+ L + + + C +A +P E L L Sbjct: 380 LADETKPKAAHDVKGPLLAL---WEHGLDLRGLTCDTAIAAYLAMPGQRSFPIEELVL-- 434 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 + +E D + RE+ LE Sbjct: 435 ----------RYLNRELRYETPADGQASLFDDVEAGMARDLALKAQAVRELADALERHLA 484 Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 ++ E L + + G D TL + + +L G Sbjct: 485 ARGGTRLMTEVELPLTRVLAEMEHTGIAADRQYFATLEAEFSAAAKQAVEAAHAL-VGEQ 543 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL- 289 + ++L+ LF++ GL +T + L Q + R Sbjct: 544 FNLGSPKQLQEILFVKLGLPKTKKIKTGYTTDADALAWLATQTDNELPAILLRHRDQTKL 603 Query: 290 --KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ + DGR+ T +QI+ Sbjct: 604 RATVEGLIKEIADDGRIHTT-------------------------------FNQIVAATG 632 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401 + P+ I +R I +G L+ AD + IE R++A ++G++ + A Sbjct: 633 RLSSEKPNLQNIPIRTAEGRRIRKGFIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAA 692 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +G D + T AR F + P QVT + RA K M L Y +A + + Sbjct: 693 FGSGHDFHQATAARVFGLPPDQVTPELRARIKAMNYGLAYGLSDF---GLAGQLNIPVAE 749 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 L + + + + Sbjct: 750 ARALKE--------------------------------------------EYFEEFAGVR 765 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 L++ +Q ++G RR LP L Sbjct: 766 EYLNRVVDQARKDGYTETILGRRRY---------------LP---------------DLT 795 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETP 637 + RQ RE L I Q + DI+ M+ KA ++L VHDE+V E Sbjct: 796 SDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLKVRKAMEGMRSRMLLQVHDELVFEVA 853 Query: 638 DTDEFNASMLYH 649 + + L Sbjct: 854 PGELDDLIALVR 865 >gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] Length = 1040 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 97/499 (19%), Positives = 161/499 (32%), Gaps = 117/499 (23%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + ++R+ L E L L + + D G VD L +Q + E + + Sbjct: 624 ILTEQVKYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFE 683 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L+ LF + GL T+T + ++L F + Sbjct: 684 -AIGREVNLSSPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYF 742 Query: 285 RSAVLKLNTLV---EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R L + + + SDGR+ T Q Sbjct: 743 RDRSKLLQVVRNLGDRIASDGRIHTT-------------------------------FGQ 771 Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 + + DP+ I + +R IA L+ AD + IE R++A ++G+ Sbjct: 772 TVAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGD 831 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF++GEDL+ + A F VAP VT QR K L Y A +A Sbjct: 832 EGLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAF---GLAGQL 888 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ HL++T S Sbjct: 889 RISQGEAKHLMETYF--------------------------------------------S 904 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + + L + G RR LP R+ N Sbjct: 905 RFGAVRDYLEHIVSEARRVGYTETMWGRRRY---------------LPGLRATNRVVAEN 949 Query: 576 N-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R+ LN + G + + QA+ R + M A G I+L +HDE+V Sbjct: 950 ARRAALNAPIQ---------GSAADLMKQAMLR---VDAAMAAAGLGSRILLQIHDELVF 997 Query: 635 ET-PDTDEFNASMLYHLMT 652 E P + ++ MT Sbjct: 998 EVAPGEVDALRRVVTEAMT 1016 >gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a] gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a] Length = 884 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 83/498 (16%), Positives = 145/498 (29%), Gaps = 122/498 (24%) Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 D + R L L E L + + G D L + E T + + Sbjct: 469 DADLERRSAAVL--LRDMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAH 526 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G + ++L+ LF + GL +T + L Q+ + Sbjct: 527 EI-VGRTFNLGSPKQLQQILFDDLGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLR 585 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 R +R + P + R H +Q+I Sbjct: 586 HRD--------------------------VARLKTVVDSLLPM--IDDAGRIHTTFNQMI 617 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397 ++DP+ I +R + G L+ AD + IE R++A ++G++ Sbjct: 618 AATGRLSSTDPNLQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDEG 677 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF +GEDL+ A +F + ++V + R K M L Y A +AS G+ Sbjct: 678 LIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAF---GLASQLGI 734 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + ++ R Sbjct: 735 APDEA--------------------------------------------REHMDAYFGRF 750 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + L E+ +G RR LP Sbjct: 751 GGVRDFLRGVVERARRDGYTETMLGRRRY---------------LPDL------------ 783 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 T+ R+ L I Q + DI+ M+ +A ++L VHDE Sbjct: 784 ----TSDNAQRRQMAERMALNAPI-QGSAADIIKIAMLGVDRALRAGGHASRLLLQVHDE 838 Query: 632 IVCETPDTDEFNASMLYH 649 +V E + L Sbjct: 839 LVLEIAPGEYDAVEALVR 856 >gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS] gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS] Length = 880 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 110/619 (17%), Positives = 200/619 (32%), Gaps = 144/619 (23%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T ++ ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVNVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDRAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647 +Q + DIL M+N KA ++L VHDEIV E P DE A ++ Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVP-NDELTAIKKLV 852 Query: 648 YHLMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 853 KDTMEAAVDLA--VPLCVD 869 >gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 82/517 (15%), Positives = 154/517 (29%), Gaps = 136/517 (26%) Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210 G + R ++ L L E L + + G+ VD + Sbjct: 421 WAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKE 480 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNK 267 ++ + KL+ ++ + G + ++L LF + L + T+T VL Sbjct: 481 IESKLLKLESQIYQIA-GEWFNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELY 539 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + RM + + Sbjct: 540 DKHDIIPLILDYRMYTKILTT------------------------------YCQGLVQA- 568 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 P R H Q T +++P+ I +R + EG L+ AD + Sbjct: 569 INPVTGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYMLIDADYS 628 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA ++ ++ + AF+ D++ T A F V +QVT R+ K + + Y Sbjct: 629 QIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYG 688 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 ++ ++ A + Sbjct: 689 ISDY---GLSRDIKISRKEAAEFIN----------------------------------- 710 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + +K+ +V E L + ENG + R+ +KN Sbjct: 711 ------RYFEKYPKVKE---YLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKN------ 755 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG- 621 R+ R +N+ +Q + DI+ M+ K Sbjct: 756 --LRNYA------ERIAMNSP------------------IQGSAADIMKIAMIRVYKKLK 789 Query: 622 -----YDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652 I+L VHDE++ E+P + E ++ M Sbjct: 790 ENNLKSRIILQVHDELLIESPYEEKEIVKEIVKSEME 826 >gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33] gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33] Length = 912 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 151/399 (37%), Gaps = 45/399 (11%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E L + + +G +DV + +D E ++++ + G + + Sbjct: 510 LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEA-GEEFNINSPK 568 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF++ L T+T + + L + Sbjct: 569 QLGDVLFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 R L + ++ P SR H +QI T +SDP+ Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660 Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R +A EGK L+ D + +E RVL M+ ++ ++A++ +DL+ T Sbjct: 661 NIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKDLHDLT 720 Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 R FN++ ++ V+++QR I K++ ++ Y +A + + + +K Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E++ +F R + E EH G K+ S+ + ++ + T Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + G A K+ V + + KDK ++ L+L L++ Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIF 869 >gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG] gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF] Length = 914 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 108/616 (17%), Positives = 178/616 (28%), Gaps = 145/616 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + + V H++ +++ + + L P +AL L Sbjct: 400 LGDPERPKVMHDAK---GLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALSLEY 456 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 G+EL+ + R + + + + RL Sbjct: 457 L----GRELV-----PAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGA 507 Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L+ E L + G D + + + +E + G + Sbjct: 508 EGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREAHA-AVGHEFNLG 566 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKL 291 ++L+ LF L T+T S L Q V R R + Sbjct: 567 SPKQLQEVLFGGLNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTV 626 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++++ DGR+ T +Q + + Sbjct: 627 EGLIKSIAPDGRIHTT-------------------------------FNQTVAATGRLSS 655 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +DP+ I +R + EG + L+ AD + IE RV+A ++ ++ + AF +G Sbjct: 656 TDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSG 715 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ T FNV P V + R K M L Y A + G+ L Sbjct: 716 EDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEAGEARAL 772 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + T R + + LH Sbjct: 773 MDT--------------------------------------------YFERFGGVRDYLH 788 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 + E+ G RR LP LN+ R Sbjct: 789 RVVEEARATGYTATMLGRRRY---------------LP---------------DLNSDNR 818 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE-TPD 638 Q RE L I Q + DI+ M+ +A ++L VHDEIV E P Sbjct: 819 Q-RREAAERMALNAPI-QGTAADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELAPG 876 Query: 639 TDEFNASMLYHLMTSN 654 E +L M + Sbjct: 877 EREPVEEILRREMAAA 892 >gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124] gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124] Length = 866 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 77/503 (15%), Positives = 151/503 (30%), Gaps = 130/503 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G+ V+ + L+ E + +E+ L + ++L Sbjct: 467 DIELPLETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL K P ++ R S+ + L Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T +Q +T +++P+ Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613 Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I EG L+ AD + IE RVLA ++G++ + AF D++ Sbjct: 614 QNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT R+ K + + Y G + + ++ Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ---DLNISRKEA-------- 722 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 K+ R ++ + + + Sbjct: 723 ------------------------------------KEYMDIYFERYPKIKEYISKVIHE 746 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 G + RR + N ++ L R +N Sbjct: 747 AQTKGYVLTMLNRRRY--IPEANSSNKIVKAL------------GERLAMNAP------- 785 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFN 643 +Q + DI+ M+N ++L VHDE++ + + Sbjct: 786 -----------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIV 834 Query: 644 ASMLYHLMTSNPSWAKGLPLKAE 666 +L M + +PL + Sbjct: 835 KKLLKEEMENTIK--LSVPLDVD 855 >gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] Length = 838 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 106/662 (16%), Positives = 204/662 (30%), Gaps = 168/662 (25%) Query: 25 AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84 A+ A D V + + V + ++E L F+ L Sbjct: 317 ADLFSTPEVAVIHDFERVIAINEGYVEVDFKEIEEFLPEKGKIYT-----FDLKSLYHKV 371 Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 + +I V E L QK K+++ + Sbjct: 372 GEKLRNFSFIDLS--------------VCEYLLNPLQKDYSSKDILKK------------ 405 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYC 198 + +Y + + +EI L+ S E L ++ + RG Sbjct: 406 ---RLGVVSLEEVKDYVHYTLDIGKEILNELKKEGLENLYESIEHPLTFVLYKMEKRGVL 462 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 D + +D + ++++++ + G + ++L LF + L T++ Sbjct: 463 FDKEYLENFGKELDRKSKEIEKKIFEIA-GEKFNLNSPKQLSKILFEKLKLKPLKKTKSG 521 Query: 259 CQRVLSSNKKL----TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314 + + L A + R + ++ + +++ M+ DGR+R T G Sbjct: 522 YSTDVETLTALALKGHKIAELLLEYR-KLTKLNSTFVKGILKHMDEDGRVRTTFIQTG-- 578 Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVI 369 T +++P+ + IS +R V Sbjct: 579 -----------------------------TATGRLSSAEPNLQNLPVSDEISKKIRYAVT 609 Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429 A G LV AD + IE R+LA ++ ++ L+A+ G D++ T + F ++ +V + R Sbjct: 610 APAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFGISAEEVDERLR 669 Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489 I K + + Y ++ G+++ + + + + + E Sbjct: 670 RIAKTVNFGIIYGMSP---HGLSERLGISVEEAEKYI------DRYFEKFPKVKEYIE-- 718 Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549 N L +A+E+ K I RKR Sbjct: 719 --------------------------------NTLREAYEK--GYVKTIFGRKRP----- 739 Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609 LP +S N R +Q + DI Sbjct: 740 ------------LPELKSS------------NKNIRSFGERAA-----VNATIQGTAADI 770 Query: 610 LAEGMMNA----TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLK 664 + M+ K G +VL VHDEIV E + E ++ M + +PL Sbjct: 771 MKLAMVKLYKKLEKLGAYMVLQVHDEIVIEALEEKTEEIMKIVKETMENVVE--FSVPLT 828 Query: 665 AE 666 + Sbjct: 829 VD 830 >gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] Length = 881 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 102/639 (15%), Positives = 192/639 (30%), Gaps = 149/639 (23%) Query: 63 NTDVTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---L 118 N + V+ N R + I + + T VL G+ + A L L Sbjct: 346 NQETIYVSQNPDLLRQPLFTKVLEKPILTYDFKRTKVLLSHLGVEISEAAFDARLANYLL 405 Query: 119 SSQKMEEGKELIAR------FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 S+ E + + R P + T + Sbjct: 406 SNVDDNELATIARLHTSISLESDEAVYGKGVKRAFPAKDLLFAHLARKVAVLATSKPVML 465 Query: 173 KRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 ++L E L + + G V+ + + L QE+ L Sbjct: 466 EKLAENGQSDLYYKIELPLANVLAKMEIAGIKVNKLTLMEMAEQNRNIIDALTQEIYDLA 525 Query: 227 YGLVSSSRCLEKLKTWLFLETGLH--LEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 G + ++L + LF + L + T+T VL + P ++ + R Sbjct: 526 -GEEFNINSPKQLGSILFEKMQLPLTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQ 584 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + L L + + DG++ H Q Sbjct: 585 ITKLQSTY-LIGLQDYIMEDGKI-------------------------------HTRYVQ 612 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 +T ++DP+ I +R S + L+ +D + IE RVLA ++G+ Sbjct: 613 DLTQTGRLSSTDPNLQNIPIRMEQGRLIRKAFTPSSDDWLLLSSDYSQIELRVLAHISGD 672 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 + + AF D++ T R F + VT + R K + + Y +++ Sbjct: 673 EHLIAAFNDNADIHTATAMRVFGIEKEADVTANDRRNAKAVNFGIVYGISDF---GLSNN 729 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + T + + + + A + ++ Sbjct: 730 LGISRQKARDYIDT------YFERYPGIKKYMDAVVREAKDKGYVE-------------- 769 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + ++RR++P + + R+ R Sbjct: 770 -----------------------TLFKRRRELPDI--------------NSRNFNVRSF- 791 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 R+ +N+ +Q + DIL M+N KA ++L V Sbjct: 792 AERTAINSP------------------IQGSAADILKIAMINLDKALVDGEFKAKMLLQV 833 Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666 HDEIV E P + L +M A +PL+A+ Sbjct: 834 HDEIVLEVPKQELAAVRQLVKEIMEDAVDLA--VPLRAD 870 >gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1] Length = 833 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 103/667 (15%), Positives = 207/667 (31%), Gaps = 162/667 (24%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVM------------PQVLKEALENTDVTIVAHNSYFE 76 + AF F + V D + +K+ L + S + Sbjct: 289 EIKKIAFSFGSNTVY-IDIFQIEDLKEIFEKEEFEFTTHEIKDFLVKLSYKGIECKSKYI 347 Query: 77 RTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKE--LIAR 132 T + A L+ + VL + +PS + G+ +K+EE +E L Sbjct: 348 DTAIMAYL-LNPSESNYDLDRVLKKYLKVDVPSYEEVFGK--GRDKKKLEEIREDVLADY 404 Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192 C + + RE F E ++ K L E L + +++ Sbjct: 405 ICS-------RCVHLFDLREKLMNFIE--------EMDMKKLL---LEIEMPLVEVLKSM 446 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G+ +D + L+Q +D ++ ++ G + ++L +LF + L + Sbjct: 447 EVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVI 505 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T+T ++L P + ++ +++ Sbjct: 506 KKTKTGYSTDSEVLEQLVP----------------------YNDVVSD------IIEYRQ 537 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 ++ F P +R H Q++T +++P+ I +R Sbjct: 538 LTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRA 596 Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 I + +V AD + IE RVLA ++G++ +++F ED+++ T A F V +VT Sbjct: 597 FIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTP 656 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K + + Y ++ ++ + + + + Sbjct: 657 EMRRAAKAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYI 707 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 E A E+ ++ I +RR + Sbjct: 708 EKIVRFAKENGYV-------------------------------------TTIMNRRRYI 730 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 P + + T Q R +Q + Sbjct: 731 PEINSRNF---------------------------TQRSQAERLAMNAP------IQGSA 757 Query: 607 RDILAEGMMNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAK 659 DI+ M+ + ++L VHDE+V +T D + +L M + Sbjct: 758 ADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVKKILKENMENVIK--L 815 Query: 660 GLPLKAE 666 +PL E Sbjct: 816 KVPLVVE 822 >gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] Length = 887 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 91/504 (18%), Positives = 159/504 (31%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G VD+ V + +L + + G + R ++L Sbjct: 488 DLEIPLIPVLVSMEQAGIGVDLDAFAGFLDDVSTQLDELTRSIIRHA-GEPFNIRSSQQL 546 Query: 240 KTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF + + + T T T +VL + + P + RM + L L Sbjct: 547 AAILFDKLDIKEGNKTATGQRSTANQVLEAIRSRHPIVEDILEYRMLEKLRSTY-LEPLP 605 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + + D RL H +Q+ T +S P+ Sbjct: 606 KLVGEDSRL-------------------------------HTHFNQLATATGRLSSSQPN 634 Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R+C IA G L AD + IE RVLA +G+ + AF ED++ Sbjct: 635 LQNIPIRGKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHT 694 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T A + P V D+R K + L Y G QK+A + +N ++ Sbjct: 695 RTAALLTDKQPQDVLADERRNAKTINFGLIYGMGP---QKLARELDITVNQAKEFIE--- 748 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +++ L + Sbjct: 749 -----------------------------------------RYFDKLATLKAYYDTIVKD 767 Query: 531 TIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +G +A +RR +P ++ + Q R Sbjct: 768 AESHGFVTTLAGRRRLLPELHSRN---------------------------TQLVSQARR 800 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTD-EF 642 + ++Q + DI+ M+ + G ++L VHDE++ E P+ Sbjct: 801 Q------AVNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQVHDELIIEAPEASIRP 854 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 L +M S A +PLK + Sbjct: 855 AGERLKTIMQSVADLA--VPLKVD 876 >gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131] gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131] Length = 880 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 110/619 (17%), Positives = 198/619 (31%), Gaps = 144/619 (23%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIEVVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGTKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA--SML 647 +Q + DIL M+N KA +L VHDEIV E P DE A ++ Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKCLLQVHDEIVLEVP-NDELTAIKKLV 852 Query: 648 YHLMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 853 KDTMEAAVDLA--VPLCVD 869 >gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] Length = 882 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 84/497 (16%), Positives = 177/497 (35%), Gaps = 48/497 (9%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139 LK L + + +++A + + + + E ++++ K ET Sbjct: 385 LKELLKLGFSFQKPVYDMMIAYHLVSSQTKEDYTSIGQYYLKTIAEDEKIVFAKQKIETL 444 Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 N R +E+ L E L + ++ +G + Sbjct: 445 SIDSYGNFLLKRSQILYSCLDSLEKDLKEKELENVLW---ETELPLIPVLASMEKQGIKI 501 Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259 D + ++ + L++E+ G + ++L LFL+ L T+T Sbjct: 502 DRKYFQKYSLELNEKLVLLEKEIWKEA-GEEFNINSPKQLGEILFLKLNLPTGKKTKTGF 560 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + + L+ Q Q+ N + ++ ++ Sbjct: 561 STDVEVLENLSSQGFQIATNLL---------------------------EYRKLAKLKNT 593 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK 374 P R H QI T +SDP+ I +R IA +G Sbjct: 594 YVDPIPKMV-KFGDRIHTCYHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGW 652 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGK 433 KL+ D + +E RVLA ++ ++ +KA++ +DL+ T + F + +V+++QR + K Sbjct: 653 KLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIFELEEKEEVSREQRTMAK 712 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 ++ ++ Y +A G+++ A +K E++ F + E +H Sbjct: 713 IINFSIIYGKTPF---GLAKELGISVKDAAEYIK--RYFEQYPRVAQFETEIIEFAEQHG 767 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + + G K+ HS+ + N+ + T+ G A K+ + + Sbjct: 768 YVETYFGR-----KRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILKKVMIKIYSWLL 822 Query: 554 DKNNLILMLPSGRSLVY 570 K ++ L+L L++ Sbjct: 823 GKTDIYLLLQVHDELIF 839 >gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11] gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11] gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11] Length = 912 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 151/399 (37%), Gaps = 45/399 (11%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E L + + +G +DV + +D E ++++ + G + + Sbjct: 510 LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEA-GEEFNINSPK 568 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF++ L T+T + + L + Sbjct: 569 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 R L + ++ P SR H +QI T +SDP+ Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660 Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R +A EGK L+ D + +E RVL M+ ++ ++A++ +DL+ T Sbjct: 661 NIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKDLHDLT 720 Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 R FN++ ++ V+++QR I K++ ++ Y +A + + + +K Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E++ +F R + E EH G K+ S+ + ++ + T Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + G A K+ V + + KDK ++ L+L L++ Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIF 869 >gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 886 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 106/664 (15%), Positives = 201/664 (30%), Gaps = 159/664 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 FA D P LKE LE++ V + RT + L I Sbjct: 343 FALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAEG 397 Query: 93 WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+LA ++ ++ E+ + +N Sbjct: 398 LSFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDLEVYGKG-----------KNAKIP 446 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201 + F + L+ L EQ+ Y + + G V Sbjct: 447 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 506 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260 + L V +L++++ G + ++L LF + GL + T+T Sbjct: 507 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 565 Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL+ K+ +P + R S+ + L++ ++ Sbjct: 566 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDE------------------ 606 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 R R H Q +T + DP+ I +R + S Sbjct: 607 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSP 654 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 + D + IE RVLA ++ + +AF+TG D++ T + F+++ +VT QR Sbjct: 655 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 714 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y ++ ++ + N +++ + + W Sbjct: 715 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFI--NEYFDQYPGIQAYMDW------- 762 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550 A + E G A I +RR +P ++ Sbjct: 763 -----------------------------------AVKDAREKGYAETIMHRRRYLPDIH 787 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + RS R+ +N+ +Q + DI+ Sbjct: 788 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 814 Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 M+N K +V+ VHDE++ + P + + +M + +PL Sbjct: 815 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 872 Query: 664 KAEG 667 A+ Sbjct: 873 VADA 876 >gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 899 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 103/621 (16%), Positives = 198/621 (31%), Gaps = 148/621 (23%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K I + + + VL GL + L LS+ + E L + Sbjct: 382 FKKVLEQPIATYDFKRSKVLLSHLGLDLPAASYDARLANYLLSTVEDNEMATLARLYTTI 441 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEP------LSSKEQE 184 +T E +Y + + + V V + + +L + E Sbjct: 442 PLDTDEVVYGKGVKRAVPDKAVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELP 501 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ + + V +L QE+ + G V + ++L LF Sbjct: 502 LANVLAKMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILF 560 Query: 245 LETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + L L T+T VL + P ++ + R + + L + + Sbjct: 561 EKMQLPLHLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTY-VIGLQDYIM 619 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR H Q +T + DP+ I Sbjct: 620 ADGR-------------------------------IHTRYLQDLTQTGRLSSVDPNLQNI 648 Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S + L+ +D + IE RVLA ++G++ + AF+ G D++ +T Sbjct: 649 PIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 708 Query: 414 ARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 R F + P VT + R K + + Y +++ G+ + T Sbjct: 709 MRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDF---GLSNNLGIPRKQAKAYIDT---- 761 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + +++ + + + + Sbjct: 762 -------------------------------------YFERYPGIKAYMERVVREAKD-- 782 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + + ++RR +P + ++ + RS R+ +N+ Sbjct: 783 KGYVETLFKRRRQLPDINSRQF---------NLRSFA------ERTAINSP--------- 818 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASM 646 +Q + DIL M+N +A ++L VHDEIV E P + Sbjct: 819 ---------IQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPSHELAAVKE 869 Query: 647 L-YHLMTSNPSWAKGLPLKAE 666 L M S + A +PL+ + Sbjct: 870 LVKETMESAVNLA--VPLRVD 888 >gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232] gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232] Length = 880 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 363 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 422 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 423 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 482 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 483 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 541 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 542 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 577 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 578 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 632 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 633 LEQGRLIRKAFTPSHEDAVLLGSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 692 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 693 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQAKSYIDT------Y 743 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 768 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 769 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 799 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q + DIL M+N KA ++L VHDEIV E P+ + L Sbjct: 800 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 Query: 650 -LMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 854 DTMEAAVDLA--VPLCVD 869 >gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 913 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 105/617 (17%), Positives = 179/617 (29%), Gaps = 134/617 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + V HN+ L+ + LA P +AL + Sbjct: 400 IADPARPKVMHNAK---DALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALSVEY 456 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 +EL+ G+ + + + A T E E L Sbjct: 457 LH----RELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHD 512 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + G D A ++ + + +E + T G + ++L+ Sbjct: 513 MELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHA-TVGHEFNLGSPKQLQ 571 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKLNTLVEA 297 F E L T+T + L Q V R R + L++ Sbjct: 572 EVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPVIMLRHREQARLRSTVEGLIKT 631 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + +DGR+ T Q + ++DP+ Sbjct: 632 VAADGRIHTT-------------------------------FSQTVAATGRLSSTDPNLQ 660 Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 + +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T Sbjct: 661 NVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNT 720 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 ++ F VA ++V + R K M L Y A + + L+ T Sbjct: 721 VASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAGEARALMDTYF- 776 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 R + + L ++ Sbjct: 777 -------------------------------------------ERFGGVRDYLRHVVDEA 793 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 G RR LP LN+ RQ RE Sbjct: 794 RATGYTATMLGRRRY---------------LP---------------DLNSDNRQ-RREA 822 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 L I Q + DI+ M+ +A ++L VHDEIV E + Sbjct: 823 AERMALNAPI-QGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERDEVE 881 Query: 646 MLYHL-MTSNPSWAKGL 661 + M+S + L Sbjct: 882 TIVRREMSSAVELSAPL 898 >gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 889 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 108/671 (16%), Positives = 203/671 (30%), Gaps = 160/671 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 FA D P LK LE++ V + RT + L I Sbjct: 346 FALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAES 400 Query: 93 WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+LA ++ ++ E+ + +N Sbjct: 401 LTFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDLEVYGKG-----------KNAKIP 449 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201 + F + L+ L EQ+ Y + + G V Sbjct: 450 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 509 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260 + L V +L++++ G + ++L LF + GL + T+T Sbjct: 510 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 568 Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL+ K+ +P + R S+ + L++ ++ Sbjct: 569 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDK------------------ 609 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIAS-E 372 R R H Q +T + DP+ I + +R + S Sbjct: 610 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPARTEEGKQIRKAFVPSSP 657 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 + D + IE RVLA ++ + +AF+TG D++ T + F+++ +VT QR Sbjct: 658 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 717 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y ++ ++ + E +E +M Sbjct: 718 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFID-----EYFEQYPGIQAYM------ 763 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550 +A + E G A I +RR +P ++ Sbjct: 764 ---------------------------------DRAVKDAREKGYAETIMHRRRYLPDIH 790 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + RS R+ +N+ +Q + DI+ Sbjct: 791 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 817 Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 M+N K +V+ VHDE++ + P + + +M + +PL Sbjct: 818 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 875 Query: 664 KAE-GYESKRY 673 A+ G+ Y Sbjct: 876 VADAGWGHDWY 886 >gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638] gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638] gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68] Length = 231 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 11/236 (4%) Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 AF A L+L+ A+ N + +A+++ + + + + + AC+ Sbjct: 1 MSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSER-VFIACD 59 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 +K+ WR+ H + W EL + I + K + +++D L + LPS Sbjct: 60 SLKRLWRRAHPATCDFWYELERTVRTAIATPQ-----KTLYCGYLKIRRDGAWLRIQLPS 114 Query: 565 GRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 GR++ Y N +Y+ N+ +R+ R TYGGKL EN+ QA +RD+LA M Sbjct: 115 GRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIED 174 Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 AGY IVLTVHDEI+ E PD+ +++A + L+ + P WA +PL A G+ES RYRK Sbjct: 175 AGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230 >gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] Length = 872 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 99/623 (15%), Positives = 201/623 (32%), Gaps = 111/623 (17%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVM------------PQVLKEALENTDVTIVAHNSYF- 75 + AF F + V D + +K+ L + S + Sbjct: 328 EIKKIAFSFGEDTVY-IDVFQIEDLKEIFEKEEFEFTTHEIKDFLVKLSYKGIECKSKYI 386 Query: 76 ERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKE--LIA 131 + V+ N + VL + +PS + G+ +K+EE E L Sbjct: 387 DTAVMAYLLN--PSESNYDLDRVLKKYLKVDVPSYEEVFGK--GRDKKKLEEIGEDILAD 442 Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191 C + + RE F E ++ K L E L + + Sbjct: 443 YICS-------RCVHLFDLREKLMNFIE--------EMDMKKLL---LEIEMPLVEVLKL 484 Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G+ +D + L+Q +D ++ ++ G + ++L +LF + L + Sbjct: 485 MEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPV 543 Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+T ++L P + ++ +++ Sbjct: 544 IKKTKTGYSTDSEVLEQLVP----------------------YNDVVSD------IIEYR 575 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366 ++ F P +R H Q++T +++P+ I +R Sbjct: 576 QLTKLKSTYIDGFLPLMD-ENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRR 634 Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 I + +V AD + IE RVLA ++G++ +++F ED+++ T A F V +VT Sbjct: 635 AFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVT 694 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K + + Y ++ ++ + + + + Sbjct: 695 PEMRRAAKAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEY 745 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 E A E+ ++ T R ++ + +SR ++ + G A K Sbjct: 746 IEKIVRFAKENGYVTTIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAM 804 Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605 V + ++ L L S L D +Y + + Sbjct: 805 VKVY-----EDFKKLQLKSQLILQVHDELVVDTYKDEVD--------------------I 839 Query: 606 SRDILAEGMMNATKAGYDIVLTV 628 + IL E M N K +V+ + Sbjct: 840 VKKILKENMENVIKLKVPLVVEI 862 >gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] Length = 916 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 93/524 (17%), Positives = 189/524 (36%), Gaps = 63/524 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L + + DV +++N K NL +++A L S+ + + Sbjct: 403 LIKFISELDVKFISYN-------FKTLLNLGFTFKSMYMDMMIAYH--LISSQTKMDVII 453 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD-VTVTREIFKRL 175 ++ + K+ F K L + L G D + + Sbjct: 454 PITEYSNVDAKDFKTTFGKAHIET-LLVGEFAGYLSKIGL-GILAIYDEINHILHKEELY 511 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 + L E L + + +G +DV+ + ++ E K+++ + G + Sbjct: 512 DILIQNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEA-GEEFNINS 570 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF++ L T+T VL + ++ + + ++ ++ Sbjct: 571 PKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVD 630 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 TL ++S SR H +QI T +S Sbjct: 631 TLPNLVDS-------------------------------NSRIHTSFNQIGTATGRLSSS 659 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 +P+ I +R +A EGK L+ D + +E RVL M+ ++ ++A+ +D Sbjct: 660 EPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 719 Query: 408 LYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 L+ T R FN+ VT++QR I K++ ++ Y A +A + + + + Sbjct: 720 LHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAF---GLAKELKIPVKDASEYI 776 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 K E++ F + + E EH G K+ S+ + + + Sbjct: 777 K--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKAQAER 829 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 T+ G A K+ + + KDK+++ L+L L++ Sbjct: 830 MAVNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIF 873 >gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] Length = 975 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 83/500 (16%), Positives = 168/500 (33%), Gaps = 131/500 (26%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + + G +D A+ + ++ + VE L +++ + + G + ++L L Sbjct: 579 PLVPVLLRMEEAGVRIDPAVLNEMSSRLAVEIDNLAEKIYADS-GHRFNINSPKQLGDVL 637 Query: 244 FLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 F + L T Q VL + P A V +R + L+ L Sbjct: 638 FNKMDLPKPMKYGKGKVVSTAQDVLEELAENHPIAALVIEHRQLQKLKSTY-LDQLPSLS 696 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 + +GR+ H +Q+ T +++P+ Sbjct: 697 DREGRI-------------------------------HTTFNQVGTATGRLSSTNPNLQN 725 Query: 359 I-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I I +R+ IA+ G L+ AD + IE R++A + + L A+ TG+D++ T Sbjct: 726 IPTRTAIGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLNAYRTGQDIHTLTA 785 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F V + K+ RA K + + Y +A+ G++ ++T Sbjct: 786 AEVFGVDAETMDKETRARAKAVNFGIVYGISPF---GLAAQLGIDQKVARTYIET----- 837 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 ++ + R++ E +T+ Sbjct: 838 YYDRYKGIKRFIDETL----------------------------------------ETVR 857 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 A+ R P+ ++ P+ R R+ +NT Sbjct: 858 LAGAVSTHFGRVRPIPDIQSRN-------PNMRGFA------ERTAINTPL--------- 895 Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE-TPDTDEFNASM 646 Q + D++ M++ + + L VHDE++ + P E ++ Sbjct: 896 ---------QGTAADLIKLAMISLDREIRARGLKSRMTLQVHDELLFDVVPSEAEEMQTL 946 Query: 647 LYHLMTSNPSWAKGLPLKAE 666 + H M + +P+ A+ Sbjct: 947 VQHEMENVAE--FSIPIVAD 964 >gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104] gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104] Length = 431 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 77/490 (15%), Positives = 152/490 (31%), Gaps = 129/490 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VD + ++++++ + G + ++L Sbjct: 31 KMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEA-GEEFNLNSPKQL 89 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + GL + T+T VL K+ P + R A + + L++ Sbjct: 90 GVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQSTY-VEGLLK 148 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + D ++ H Q +T + DP+ Sbjct: 149 VIQPDNKI-------------------------------HTRYVQTLTQTGRLSSVDPNL 177 Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + E + +D + IE RVLA ++ ++ +AF G+D++ Sbjct: 178 QNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHA 237 Query: 411 TTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 +T R F V VT + R K + + Y + G+ + T Sbjct: 238 STAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGITRKQAQQYIDT- 293 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + +K+ V + E+ + + Sbjct: 294 ----------------------------------------YFEKYPGVKQYMEEIVRDAK 313 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + +RR + + + R+ R R+ +NT Sbjct: 314 D--KGYVETLYHRRRYLSDI--------------NSRNFNLRSF-AERTAINTP------ 350 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFN 643 +Q + DIL M+ K ++L VHDE+V E P+++ Sbjct: 351 ------------IQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 398 Query: 644 ASML-YHLMT 652 + L +M Sbjct: 399 LNQLVKEVME 408 >gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] Length = 887 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 93/511 (18%), Positives = 170/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ +L+ ++ S G + ++L Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQA-GEKFNLNSPKQLGH 547 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL T+T VL K +P ++ + R A + + L++ + Sbjct: 548 ILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 SDG R H Q +T + DP+ Sbjct: 607 QSDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+Q +AF+TG D++ T Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P +VT R K + + Y ++ G++ + Sbjct: 696 AMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E +P ++ + +A + Sbjct: 750 -------------YFEQYP----------------------------QIREYMDKAVQTA 768 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 E G A I +RR +P ++ KK + RS R+ +N+ Sbjct: 769 REKGYAETIMHRRRYLPDIHAKKF---------TVRSFA------ERTAINSP------- 806 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K IV+ VHDE++ + P + Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETI 855 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] Length = 887 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 93/511 (18%), Positives = 170/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ +L+ ++ S G + ++L Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQA-GEKFNLNSPKQLGH 547 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL T+T VL K +P ++ + R A + + L++ + Sbjct: 548 ILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 SDG R H Q +T + DP+ Sbjct: 607 QSDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+Q +AF+TG D++ T Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P +VT R K + + Y ++ G++ + Sbjct: 696 AMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E +P ++ + +A + Sbjct: 750 -------------YFEQYP----------------------------QIREYMDKAVQTA 768 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 E G A I +RR +P ++ KK + RS R+ +N+ Sbjct: 769 REKGYAETIMHRRRYLPDIHAKKF---------TVRSFA------ERTAINSP------- 806 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K IV+ VHDE++ + P + Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETI 855 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1] gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1] Length = 912 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 151/399 (37%), Gaps = 45/399 (11%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E L + + +G +DV + +D E ++++ + G + + Sbjct: 510 LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEA-GEEFNINSPK 568 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF++ L T+T + + L + Sbjct: 569 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 R L + ++ P SR H +QI T +SDP+ Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660 Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R +A EGK L+ D + +E RVL M+ ++ ++A++ +DL+ T Sbjct: 661 NIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKDLHDLT 720 Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 R FN++ ++ V+++QR I K++ ++ Y +A + + + +K Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E++ +F R + E EH G K+ S+ + ++ + T Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + G A K+ V + + KDK ++ L+L L++ Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIF 869 >gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 884 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 105/617 (17%), Positives = 179/617 (29%), Gaps = 134/617 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + V HN+ L+ + LA P +AL + Sbjct: 371 IADPARPKVMHNAK---DALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALSVEY 427 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 +EL+ G+ + + + A T E E L Sbjct: 428 LH----RELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHD 483 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + G D A ++ + + +E + T G + ++L+ Sbjct: 484 MELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHA-TVGHEFNLGSPKQLQ 542 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKLNTLVEA 297 F E L T+T + L Q V R R + L++ Sbjct: 543 EVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPVIMLRHREQARLRSTVEGLIKT 602 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + +DGR+ T Q + ++DP+ Sbjct: 603 VAADGRIHTT-------------------------------FSQTVAATGRLSSTDPNLQ 631 Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 + +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T Sbjct: 632 NVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNT 691 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 ++ F VA ++V + R K M L Y A + + L+ T Sbjct: 692 VASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAGEARALMDTYF- 747 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 R + + L ++ Sbjct: 748 -------------------------------------------ERFGGVRDYLRHVVDEA 764 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 G RR LP LN+ RQ RE Sbjct: 765 RATGYTATMLGRRRY---------------LP---------------DLNSDNRQ-RREA 793 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 L I Q + DI+ M+ +A ++L VHDEIV E + Sbjct: 794 AERMALNAPI-QGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERDEVE 852 Query: 646 MLYHL-MTSNPSWAKGL 661 + M+S + L Sbjct: 853 TIVRREMSSAVELSAPL 869 >gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 905 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 105/617 (17%), Positives = 179/617 (29%), Gaps = 134/617 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + V HN+ L+ + LA P +AL + Sbjct: 392 IADPARPKVMHNAK---DALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALSVEY 448 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 +EL+ G+ + + + A T E E L Sbjct: 449 LH----RELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHD 504 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + G D A ++ + + +E + T G + ++L+ Sbjct: 505 MELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHA-TVGHEFNLGSPKQLQ 563 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKLNTLVEA 297 F E L T+T + L Q V R R + L++ Sbjct: 564 EVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPVIMLRHREQARLRSTVEGLIKT 623 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + +DGR+ T Q + ++DP+ Sbjct: 624 VAADGRIHTT-------------------------------FSQTVAATGRLSSTDPNLQ 652 Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 + +R + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T Sbjct: 653 NVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNT 712 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 ++ F VA ++V + R K M L Y A + + L+ T Sbjct: 713 VASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAGEARALMDTYF- 768 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 R + + L ++ Sbjct: 769 -------------------------------------------ERFGGVRDYLRHVVDEA 785 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 G RR LP LN+ RQ RE Sbjct: 786 RATGYTATMLGRRRY---------------LP---------------DLNSDNRQ-RREA 814 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 L I Q + DI+ M+ +A ++L VHDEIV E + Sbjct: 815 AERMALNAPI-QGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERDEVE 873 Query: 646 MLYHL-MTSNPSWAKGL 661 + M+S + L Sbjct: 874 TIVRREMSSAVELSAPL 890 >gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] Length = 886 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 104/621 (16%), Positives = 197/621 (31%), Gaps = 148/621 (23%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K I + + + VL GL + L LS+ + E L + Sbjct: 369 FKKVLEQPIATYDFKRSKVLLSHLGLDLPAASYDARLANYLLSTVEDNEMATLARLYTTI 428 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEP------LSSKEQE 184 +T E +Y + + + V V + + +L + E Sbjct: 429 SLDTDEVVYGKGVKRAVPDKAVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELP 488 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ + + V +L QE+ + G V + ++L LF Sbjct: 489 LANVLAKMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILF 547 Query: 245 LETGLHL--EDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 + L L T+T VL + P ++ + R + + L + + Sbjct: 548 EKMQLPLHLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTY-VIGLQDYIM 606 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 +DGR H Q +T + DP+ I Sbjct: 607 ADGR-------------------------------IHTRYLQDLTQTGRLSSVDPNLQNI 635 Query: 360 I-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R S + L+ +D + IE RVLA ++G++ + AF+ G D++ +T Sbjct: 636 PIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 695 Query: 414 ARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 R F + P VT + R K + + Y +++ G+ + T Sbjct: 696 MRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDF---GLSNNLGIPRKQAKAYIDT---- 748 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + +++ + + + + Sbjct: 749 -------------------------------------YFERYPGIKAYMERVVREAKD-- 769 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 + + ++RR +P + + R R R+ +N+ Sbjct: 770 KGYVETLFKRRRQLPDI--------------NSRQFNVRSF-AERTAINSP--------- 805 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASM 646 +Q + DIL M+N +A ++L VHDEIV E P+ + Sbjct: 806 ---------IQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAAVKA 856 Query: 647 L-YHLMTSNPSWAKGLPLKAE 666 L M S S A +PL+ + Sbjct: 857 LVKETMESAVSLA--VPLRVD 875 >gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] Length = 806 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 108/618 (17%), Positives = 197/618 (31%), Gaps = 142/618 (22%) Query: 80 LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK---LSSQKMEEGKELIARF--C 134 K F I + + + VL G+ + L LS+ + E + F Sbjct: 289 FKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIFTDI 348 Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQ---------E 184 E + +Y + + E+ V V + + L+ L++ EQ Sbjct: 349 SLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELP 408 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 L + + G V+ A + + V L QE+ + G + ++L + LF Sbjct: 409 LANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEFNINSPKQLGSILF 467 Query: 245 LETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302 + L LE T+T + ++L P A V Sbjct: 468 EKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK------------------------ 503 Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-- 360 L + ++ L + H Q +T + DP+ I Sbjct: 504 ----ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPIR 558 Query: 361 ---SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416 +R S E L+ +D + IE RVLA ++G++ + AF G D++ +T R Sbjct: 559 LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRV 618 Query: 417 FNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 F + A VT + R K + + Y +++ G+ + T + Sbjct: 619 FGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQSKSYIDT------Y 669 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + + EN A + ++ Sbjct: 670 FERYPGIKAYMENVVREAKDKGYVE----------------------------------- 694 Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595 + ++RR++P + + R+ R R+ +N+ Sbjct: 695 --TLFKRRRELPDI--------------NSRNFNVRSF-AERTAINSP------------ 725 Query: 596 KLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYH 649 +Q + DIL M+N KA ++L VHDEIV E P+ + L Sbjct: 726 ------IQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 779 Query: 650 -LMTSNPSWAKGLPLKAE 666 M + A +PL + Sbjct: 780 DTMEAAVDLA--VPLCVD 795 >gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684] gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684] Length = 884 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 105/593 (17%), Positives = 183/593 (30%), Gaps = 135/593 (22%) Query: 97 LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-----RNKPNHR 151 VLA + G AL +AL+ + + A + D R Sbjct: 393 EVLAAAIGERPALAHDAKALREVPATLAHDTLIAAYLLEPARRSYPLDELTEERGIGTDV 452 Query: 152 EAWRLFGEYCKGDVTV----TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207 E +T E + L E L + + + G +D L T+ Sbjct: 453 EDAAAADAILVHALTAAQRPQLEERELLPLFDDVELPLVRVLRAMETAGLRLDTELLATI 512 Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLS 264 V E L++E+ LT G ++L LF + GL + +T RVL Sbjct: 513 RTRVMDEAVALEREIWELT-GEEFMIGSPQQLGQILFEKLGLSRKRRGKTGYSTDARVLQ 571 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324 + + P ++ R ++ Sbjct: 572 AIRGEHPVIEKIERWREL-------------------------------TKLASTYLDAL 600 Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVA 379 P P R H +Q+ +++P+ I + +R+C +A G L+ A Sbjct: 601 PLLISPEDHRLHTTFNQVTAATGRLSSTNPNLQNIPIRTPLGREIRACFVAEPGNVLISA 660 Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439 D + +E RVLA +AGE+ + F GED++ T A + P Q+ R+ K++ + Sbjct: 661 DYSQVELRVLAHIAGEEVLKEIFRRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGI 720 Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499 Y A + E+A+ F + P FI Sbjct: 721 VYGLSAFGL-------------------ADRLQIPREEAQEFIDRYLDGFP---AVQAFI 758 Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559 T E+ T + + +RR +P + Sbjct: 759 RTTIEQ------------------------ATDQGYVTTLMGRRRQIPELR--------- 785 Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619 N RQL ++Q + D++ M+NA + Sbjct: 786 -------------------ARNYQMRQLGERLA-----VNTVIQGTAADVIKLAMVNADR 821 Query: 620 AGY------DIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665 A + ++L +HDE++ E P + E ++ M L + A Sbjct: 822 ALHASGLRTRLILQIHDELLFEGPAEEAEQARDLVVPQMVDALELDPPLVVDA 874 >gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO] Length = 838 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 80/532 (15%), Positives = 162/532 (30%), Gaps = 81/532 (15%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 + + +++ L ++L + G A Sbjct: 365 ITDPTRLKKVYDAKRTYVALNRYTGK---TKGIDFDVLLGAYLLDTNEKSTDIEGIAAHY 421 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-P 177 ++ + + + K + P E LF + V + +L Sbjct: 422 GYNDIQSDEAVYGKGAK---------KGLPEEEE---LFFAHLARKVAAINALTPKLSQE 469 Query: 178 LSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 L+ K E L + + G VD + +++Q++ G Sbjct: 470 LAEKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEA-G 528 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL + T+T VL ++ P + R A Sbjct: 529 EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + SDG++ H Q +T Sbjct: 589 QSTY-VEGLLKVIQSDGKV-------------------------------HTRYVQTLTQ 616 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I +R + E + +D + IE RVLA ++ ++ Sbjct: 617 TGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLK 676 Query: 400 KAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 AF G+D++ +T R F + VT + R K + + Y + G++ Sbjct: 677 AAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ---NLGIS 733 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + T + + + E A + ++ T R ++ +SR Sbjct: 734 RKAAQQYIDT------YFEKYPGVKEYMERIVREAKDQGYVETLYHR-RRYLPDINSRNY 786 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI-LMLPSGRSLV 569 + + + T G A K + L K+ ++L LV Sbjct: 787 NIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELV 838 >gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] Length = 910 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 85/524 (16%), Positives = 154/524 (29%), Gaps = 132/524 (25%) Query: 149 NHREAWRLFGEYCKGDV-TVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYC 198 E Y +R K L+ L + E L Y + G Sbjct: 471 EDPEEVEHRMHYACYQAYVASRAPQKLLKRLEEQGMRALYEEVELPLVYTLYDMETAGIA 530 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 V+ + + +L++ + G + ++L LF + GL T+T Sbjct: 531 VEKEALKSYGDQLVGRINELEEGIYREA-GETFNINSPKQLGEVLFGQLGLPGARKTKTG 589 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 L V R L+F ++ Sbjct: 590 YSTAADVLDPLAVNYQIV----------------------------RDVLEFRQLTKLKS 621 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEG 373 + + R H Q +T +++P+ I + +R A EG Sbjct: 622 TYADGL-AKVIADDGRIHSSFQQTVTATGRLSSTEPNLQNIPIRMELGKEIRRVFPAMEG 680 Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 V +D + IE RVLA ++ + ++A+ G+D++ T + F+ +VT QR+ K Sbjct: 681 CVFVDSDYSQIELRVLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAK 740 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y A +A G++ + Sbjct: 741 AVNFGIVYGISAF---GLAKDLGISREEAQEYIDGYF----------------------- 774 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI-IARKRRDVPLVYMK 552 + R L + L E + G A+ + +RR VP + Sbjct: 775 ------------------AAYPR---LHDYLDGLVEFARKEGYAVTLFGRRRPVPEL--- 810 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612 K+ N + R +N VQ + DI+ Sbjct: 811 KNSNFMQRQF------------GERVAMNAP------------------VQGTAADIIKI 840 Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL 650 M+ ++LTVHDE++ ET + +E + Sbjct: 841 AMVRVHDRLAKEGLRSRLILTVHDELLVETFEQEEQEVREILDQ 884 >gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] Length = 905 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 112/657 (17%), Positives = 190/657 (28%), Gaps = 149/657 (22%) Query: 33 FAFGFDDHPV--ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90 A V +L D D Q L L + V H + T A I + Sbjct: 361 IALAAGGQGVAYDLADITPDDE--QALATWLADPTAPKVLHGAK---TAWHALAARGIGL 415 Query: 91 HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFC----KGETHECLYD 144 + LA P + ++++ G + G + + + Sbjct: 416 DGVVFDTELAAYLCYPDQRGYDLGDLVARHLGRELKVGDDDAQGALDLDLGGAGTQGVRE 475 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + D R L + E L + + G D A Sbjct: 476 ATRAAAVADLAQALAGQLDD----RGAASLL---TDVELPLSAVLARVEATGIATDTAYL 528 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 L + ++ G + ++L+ LF E + T+T + Sbjct: 529 TGL-ERGFADQVAQAAAEAYDAIGHEVNLGSPKQLQEVLFGELDMPKTKKTKTGYTTDAA 587 Query: 265 SNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 + +L + F + A R A + L+++++ DGR+ T Sbjct: 588 ALAELYAKTGHPFLEHLLAHRDAAKLRVTVEGLLKSVHPDGRIHTT-------------- 633 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KK 375 Q I +++P+ I +R EG + Sbjct: 634 -----------------FQQTIAATGRLSSTEPNLQNIPIRTEAGRQIRRAFRVGEGFES 676 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++G++ ++AF TGEDL+ +R F V PA VT + R+ K M Sbjct: 677 LLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVKAM 736 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y A + G+ L Sbjct: 737 SYGLAYGLSAFGLSQ---QLGIATGEAQGL------------------------------ 763 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 +R + L E+ G RR Sbjct: 764 --------------MDDYFARFGGVREYLDGVVEEARATGYTATVLGRRRY--------- 800 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615 LP L + RQ R+ L I Q + DI+ M+ Sbjct: 801 ------LP---------------DLTSDNRQ-RRQMAERMALNAPI-QGSAADIIKLAML 837 Query: 616 NATKAG------YDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 + ++L VHDE+V E P E +L M + ++ +PL Sbjct: 838 GVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLRTQMGA--AYTLDVPLDV 892 >gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] Length = 899 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 102/624 (16%), Positives = 188/624 (30%), Gaps = 137/624 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L + + V H+S + A +H +A P + AL+ Sbjct: 381 LADAERPKVLHDSK---PAVLAFAAHGWELHGIARDTQIAAYLARPDQRSYDLTDLALRY 437 Query: 119 SSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +++ + E G E + ++N A + D ++R+ + Sbjct: 438 LHRELRVDAPETGQLTLDGLGDEGVAEQNLMLQARATLDLAD--AIDAELSRDGEQSARL 495 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 ++ E L + T+ G D L E Q + G + + Sbjct: 496 MAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEV-VGREFNLGSPK 554 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTL 294 +L+ LF E GL +T + + L Q + + R ++ L Sbjct: 555 QLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKSTVDGL 614 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +++++ DGR+ T +Q + +++P Sbjct: 615 LKSVSDDGRIHTT-------------------------------FNQTVAATGRLSSTEP 643 Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R + EG + L+ AD + IE R++A ++ + ++AF +G D Sbjct: 644 NLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDF 703 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T + F V VT DQR K M L Y A + G++ L Sbjct: 704 HAATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQ---QLGISAEEARGL--- 757 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + + L + Sbjct: 758 -----------------------------------------MENYFAGFGGVRDYLQEVV 776 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + ++G RR LP L + RQ Sbjct: 777 ARARQDGYTSTILGRRRY---------------LP---------------DLVSDNRQ-R 805 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642 RE L I Q + DI+ M++ A ++L VHDE+V E + Sbjct: 806 REMAERMALNAPI-QGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERE 864 Query: 643 NASMLY-HLMTSNPSWAKGLPLKA 665 L M ++ +PL+ Sbjct: 865 TLEALVRKQMGE--AYPLSVPLEV 886 >gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118] Length = 886 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 89/511 (17%), Positives = 171/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ +L+ ++ G + ++L Sbjct: 488 EIPTACVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQA-GEKFNLNSPKQLGH 546 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+T VL K +P ++ + R A + + L++ + Sbjct: 547 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 605 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H Q +T + DP+ Sbjct: 606 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 634 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+Q +AF+TG D++ T Sbjct: 635 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 694 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P QVT R K + + Y ++ G++ + Sbjct: 695 AMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 748 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E +P ++ + + +A ++ Sbjct: 749 -------------YFEQYP----------------------------QIKDYMDKAVQEA 767 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A I +RR +P ++ KK + R+ R+ +N+ Sbjct: 768 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 805 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K +V+ VHDE++ + P + Sbjct: 806 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 854 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 855 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 883 >gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] Length = 887 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 106/644 (16%), Positives = 212/644 (32%), Gaps = 148/644 (22%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 WD K L + + +S ++ +L N + + +++A Sbjct: 359 WDQAIQSP---AFKAWLADASNQKILFDSKRDQVILA---NAGLDLAGIDFDIMIANYLI 412 Query: 105 LPSALKAVGEALKLSS--QKMEEGKELIARFCKGE-THECLYDRNKPNHREAWRLFGEYC 161 K + + L + ++ + + + K + + N +A L E Sbjct: 413 DTHLAKELADMLTNNDMPSLVKYDEAVYGKGAKQAVPDSAELNDHLANKVKAMGLLVEPL 472 Query: 162 KGDVT--VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + ++++ + E L + + +G VD + NQ + +++ Sbjct: 473 TQQLKDLHMWDLYQTI------EMPLARVLARMEIQGVKVDAQILADKNQALLERLAQME 526 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQV 276 E+ L G + +++L LF + L + T+T T VL P + Sbjct: 527 AEIYDLA-GEEFNINSVKQLGVILFEKLELPIIKKTKTGYSTAADVLEKLADKHPIIPAI 585 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R S+ L L + DG++ H Sbjct: 586 LEYRQ-ISKLQGTYLAGLPTYIKEDGKI-------------------------------H 613 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390 Q +T ++DP+ I +R + + EG +L AD + IE RVLA Sbjct: 614 SRFVQTLTQTGRLSSADPNLQNIPARIEEGRRIRQAFVPAHEGWQLFGADYSQIELRVLA 673 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQGGAKAFQ 449 +A +Q + AF++GED++ T R F + P V + R K + + Y Sbjct: 674 HIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTVIDANLRRQAKAVNFGIVYGISDY--- 730 Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509 +++ + ++ +E + ++M++ E A E ++ T Sbjct: 731 GLSNNLNIPRKHAKAFIE-----NYFEKYPDIHQFMEDIVAE-AKEKGYVETLF------ 778 Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 ++RR +P + + RS Sbjct: 779 -------------------------------KRRRYLPDIDASNF---------NIRSFA 798 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YD 623 R+ +N+ +Q + DI+ M+ A Sbjct: 799 ------ERTAMNSP------------------IQGTAADIIKIAMVRIQDALDEKGLQSR 834 Query: 624 IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L+VHDE++ E P + E + ++ +M S +PLK E Sbjct: 835 LLLSVHDEVILEGPAEEMEVLSDLVPDIMESCVE--LDVPLKVE 876 >gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31] gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31] Length = 916 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 91/534 (17%), Positives = 188/534 (35%), Gaps = 83/534 (15%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEA 115 L + + DV +++N K NL +++A + + Sbjct: 403 LIKFIAELDVKFISYN-------FKTLLNLGFTFKSMYMDMMIAYHLISSQTKMDVFIPI 455 Query: 116 LKLSSQKMEEGKE----------LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 + S+ ++ K L+ F + L + E + + D+ Sbjct: 456 TEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGLGI--LAIYDEINHILHKEELYDI 513 Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E L + + +G +DV+ + ++ E K+++ + Sbjct: 514 ------------LIQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEE 561 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF++ L T+T VL + ++ + + Sbjct: 562 A-GEEFNINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRK 620 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 ++ ++TL ++S SR H +QI Sbjct: 621 LNKLKTTYVDTLPNLVDS-------------------------------NSRIHTSFNQI 649 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 T +S+P+ I +R +A EGK L+ D + +E RVL M+ ++ Sbjct: 650 GTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDEN 709 Query: 398 KLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++A+ +DL+ T R FN+ VT++QR I K++ ++ Y A +A Sbjct: 710 LIEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAF---GLAKELK 766 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + + +K E++ F + + E EH G K+ S+ Sbjct: 767 IPVKDASEYIK--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSK 819 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + + T+ G A K+ + + KDK+++ L+L L++ Sbjct: 820 NKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIF 873 >gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665] gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 937 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 93/511 (18%), Positives = 156/511 (30%), Gaps = 135/511 (26%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVA----LAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L E L L + G VDV L D + + T G+ + Sbjct: 526 LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASVAEETGGMQVNL 585 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---K 290 ++L+ LF + T+T + S + L Q F + A R A Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDATKLRQT 645 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L+E + D R+ T Q Sbjct: 646 VEGLLETVAPDDRIHTT-------------------------------YSQTAAATGRLS 674 Query: 351 TSDPDPLQII-----SDCVRSCVIA----SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + P+ I +R +A E L+ AD + IE R++A ++ ++ ++A Sbjct: 675 SLHPNLQNIPVRTEAGRRIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQA 734 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F GEDL+ ++ F V P +VT +QRA K M L Y + ++ ++++ Sbjct: 735 FREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSF---GLSKQLKISVDE 791 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 L+K R + Sbjct: 792 ARGLMKGYF--------------------------------------------DRFGGVR 807 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + L Q ++G RR LP L+ Sbjct: 808 DYLRDVVAQARQDGYTSTIEGRRRY---------------LP---------------DLS 837 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCE 635 + RQL R+ L I Q + DI+ M++ ++L VHDE++ E Sbjct: 838 SDNRQL-RDMAERAALNAPI-QGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILE 895 Query: 636 TPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 P + E ++L M +PL Sbjct: 896 VPAAELEQATALLEERMGRAAE--LSVPLDV 924 >gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5] gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5] Length = 909 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 101/624 (16%), Positives = 187/624 (29%), Gaps = 137/624 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118 L + + V H+S + A + +A P + AL+ Sbjct: 391 LADAERPKVLHDSK---PAVLAFAAHGWELQGIARDTQIAAYLARPDQRSYDLTDLALRY 447 Query: 119 SSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 +++ + E G E + ++N A + D ++R+ + Sbjct: 448 LHRELRVDAPETGQLTLDGLGDEGVAEQNLMLQARATLDLAD--AIDAELSRDGEQSARL 505 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 ++ E L + T+ G D L E Q + G + + Sbjct: 506 MAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEV-VGREFNLGSPK 564 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTL 294 +L+ LF E GL +T + + L Q + + R ++ L Sbjct: 565 QLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKSTVDGL 624 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +++++ DGR+ T +Q + +++P Sbjct: 625 LKSVSDDGRIHTT-------------------------------FNQTVAATGRLSSTEP 653 Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R + EG + L+ AD + IE R++A ++ + ++AF +G D Sbjct: 654 NLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDF 713 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T + F V VT DQR K M L Y A + G++ L Sbjct: 714 HAATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQ---QLGISAEEARGL--- 767 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + + L + Sbjct: 768 -----------------------------------------MENYFAGFGGVRDYLQEVV 786 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 + ++G RR LP L + RQ Sbjct: 787 ARARQDGYTSTILGRRRY---------------LP---------------DLVSDNRQ-R 815 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEF 642 RE L I Q + DI+ M++ A ++L VHDE+V E + Sbjct: 816 REMAERMALNAPI-QGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERE 874 Query: 643 NASMLY-HLMTSNPSWAKGLPLKA 665 L M ++ +PL+ Sbjct: 875 TLEALVRKQMGE--AYPLSVPLEV 896 >gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513] gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513] Length = 872 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 83/525 (15%), Positives = 180/525 (34%), Gaps = 72/525 (13%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + AF F + V D + LKE E H + V + ++ Sbjct: 328 EIKKIAFSFGNDTVY-IDGFQI----KDLKEIFEKEKFEFTTHEIK-DFLVKLSYKGIEC 381 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 +++ T ++A + + LK + E + F KG D+ K Sbjct: 382 K-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEV--FGKG------RDKKKL 432 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRL----------EPLSSKEQELWYLDQTINDRGYC 198 L C V + ++ ++L L E L + +++ G+ Sbjct: 433 EEIGEDILADYICSRCVHL-FDLREKLMNFIEEMDMKRLLLEIEMPLVEVLKSMEVSGFT 491 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 +D + L+Q ++ ++ ++ G + ++L +LF + L + T+T Sbjct: 492 LDKEVLKELSQKINDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG 550 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 ++L P N +V + +++ ++ Sbjct: 551 YSTDSEVLEQLVP-------------------YNNIVNDI---------IEYRQLTKLKS 582 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 F P +R H Q++T +++P+ I +R I + Sbjct: 583 TYIDGFLPLMD-ENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAFIPRTK 641 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 +V AD + IE RVLA ++G++ +++F ED+++ T + F V +VT + R + Sbjct: 642 DGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRVA 701 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y ++ ++ + + + + E Sbjct: 702 KAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYIEKIVRF 752 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 A E+ ++ T R ++ + +SR ++ + G A Sbjct: 753 AKENGYVITIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSA 796 >gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] Length = 952 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 107/650 (16%), Positives = 197/650 (30%), Gaps = 146/650 (22%) Query: 39 DHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D D + + L + + V H LKA + + + + Sbjct: 413 DGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFK---AALKALTSRGLELEGVVDDT 469 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 ++ P E +L+ + G + K E +D +A Sbjct: 470 SISGYLIQPDRRTY--ELAELAQHHLNVG--IPQATAKAGQLELSFDGEDEAAADALVQS 525 Query: 158 GEYCKGDV------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 + R + L L E + + + G +D+A + Sbjct: 526 AAVVQALSRYFEGELKERRAEELLSTL---ELPVSRVLADMELAGIGIDMARMDDQLADL 582 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271 + ++ + G + ++L+T LF E L ++ +S K L Sbjct: 583 ARVIDQAQEQAFA-AIGHEVNLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLE 641 Query: 272 QAIQVFNNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + F ++ A R A L +L +++ DGR+ T Sbjct: 642 KTGHEFLVQLMAHREAAKLRQMLESLKKSVAEDGRIHTT--------------------- 680 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLA 382 Q + +++P+ I VR + EG + L+ AD + Sbjct: 681 ----------YAQNVAATGRISSNNPNLQNIPIRSEEGRRVRGIFVVGEGYECLLSADYS 730 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R++A ++G+Q ++A++ GEDL+ + F+V +VT R+ K M L Y Sbjct: 731 QIEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSAMRSKVKAMSYGLAYG 790 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + ++ ++++ L+K Sbjct: 791 LTSF---GLSKQLEISVDEARTLMK----------------------------------- 812 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + R + + L +Q +G RR L Sbjct: 813 ---------EYFDRFGAVRDYLRGVVDQARVDGYTATIEGRRRY---------------L 848 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619 P L +T RQL RE L I Q + DI+ M+ Sbjct: 849 P---------------DLTSTDRQL-RENAERIALNSPI-QGSAADIIKRAMLGVHAELK 891 Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 ++L VHDE+V E + L M + +PL+ Sbjct: 892 AQGLASRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAAAD--LSVPLEV 939 >gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 76/483 (15%), Positives = 144/483 (29%), Gaps = 127/483 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E+ L + + G+ VD + ++ + KL+ ++ + G + ++L Sbjct: 453 ERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIA-GEWFNINSPKQLSY 511 Query: 242 WLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + L + T+T VL + + RM Sbjct: 512 ILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY--------- 562 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 +G LQ P R H Q T +SDP+ Sbjct: 563 -----CQGLLQA-----------------INPSSGRVHTTFIQTGTATGRLASSDPNLQN 600 Query: 359 II-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 I +R + G L+ AD + IE R+LA ++ ++ + AF+ D++ T Sbjct: 601 IPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTA 660 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 A F V A VT + R+ K + + Y +A ++ A + Sbjct: 661 AEVFGVDIADVTPEMRSQAKAVNFGIVYGISDY---GLARDIKISRKEAAEFIN------ 711 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + R ++ L + + Sbjct: 712 --------------------------------------KYFERYPKVKEYLDNTVKFARD 733 Query: 534 NGKAI-IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 NG + + ++R + + R+L R +N+ Sbjct: 734 NGFVLTLFNRKRYIKDIKST------------NRNL---RGYAERIAMNSP--------- 769 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASM 646 +Q DI+ M+ + I+L VHDE++ E P ++ Sbjct: 770 ---------IQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKE 820 Query: 647 LYH 649 + Sbjct: 821 IVK 823 >gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] Length = 879 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 101/677 (14%), Positives = 208/677 (30%), Gaps = 167/677 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEA 60 + D ET + ID + ++ F+F ++ H L+ A Sbjct: 319 IAFDTET-TSIDTKEA---------KIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSA 368 Query: 61 LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + ++ + HN ++ +++ F L +P ++ T++LA + AL Sbjct: 369 KKAIELIFKHFIIGHNLKYDFKIIENNFKLSLP-QKYADTMILAWLKNPSLRVNMDDLAL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ + + +Y D +T + Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474 Query: 173 KRLEPLSSKEQELWYLD-----QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LEP + + D + + G +D L + + E L +E+ +L Sbjct: 475 KNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCE 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL+ P ++ + R + Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYR-ELA 592 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D SR + Q T Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------ENSRIYSSFLQTGT 623 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC IA EG + D + IE R+LA + ++ L Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ ED++ T F + + R+I K + L Y G ++ ++ + Sbjct: 684 NAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMG---YKTLSKNLKIEA 736 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 N K + + Sbjct: 737 NLA--------------------------------------------KTYIEKYFENFTS 752 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + + NG + SGR + Y Sbjct: 753 IKSYFEKVKNEAKANG-----------------------FISTLSGR----------KRY 779 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---DIVLTVHDEIVCET 636 + + + Y + +I+Q + DI+ M+ K ++L +HDE++ E Sbjct: 780 FDFENAKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEV 839 Query: 637 -PDTDEFNASMLYHLMT 652 + E +M Sbjct: 840 KDELCENFVKKTSDIME 856 >gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] Length = 910 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 176/659 (26%), Gaps = 155/659 (23%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLK-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A D D + + + L + + H++ A + + Sbjct: 367 AIADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVHDAK---PAWHALTGRGLEVRG 423 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + LA P L ++ + L + + Sbjct: 424 VVMDTALAAYLCHPDQRSYDLADL------------VVRYLHRELPRTDLDETGQGMLDL 471 Query: 153 AWRLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVA 202 + E+ L L E L + G DV Sbjct: 472 DADSGAKSAGARAVAVVELAGPLAEEVADRGAQALLEDVELPLLRTLAEMEHDGIGADVE 531 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 + + D + G + ++L+ LF + G+ T+T Sbjct: 532 YLRGIEREFDAVVERAALGAYE-AIGRQVNLGSPKQLQEVLFDDLGMPKTRRTKTGYTTD 590 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + L + F + A R A+ + L+ ++ DGR+ T Sbjct: 591 ADALADLYVKTEHPFLEHLLAHREAIRLRQTVEGLLRSVAPDGRIHTT------------ 638 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGK 374 Q I ++DP+ I +R + EG Sbjct: 639 -------------------FQQTIAATGRLSSADPNLQNIPIRTEEGYRIREGFVVGEGY 679 Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE R++A ++G++ ++AF +GEDL+ +R F V +VT R+ K Sbjct: 680 ETLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKIK 739 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L Y + L+++ Sbjct: 740 AMSYGLAYG-----LSAFGLSKQLSIDVAEA----------------------------- 765 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 + R + + L Q + G RR Sbjct: 766 -------------RTLMDDYFDRFGGVRDYLSGVVAQARQVGYTETLMGRRRY------- 805 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 LP L + RQ RE L I Q + D++ Sbjct: 806 --------LP---------------DLTSDNRQ-RREMAERMALNAPI-QGSAADLIKVA 840 Query: 614 MMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 M+ + ++L VHDE+V E + L M + +PL Sbjct: 841 MLGVHRQMGEAGMSSRLLLQVHDELVLEVAPGEREALEELVRAQMGAAAE--LSVPLDV 897 >gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] Length = 887 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 93/511 (18%), Positives = 172/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V + L V+ +L+ ++ S G + ++L Sbjct: 489 EIPTARVLARMEMNGMKVKASTLIQLQNEFAVQLKELEDKIYSQA-GEKFNLNSPKQLGH 547 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+T VL K +P ++ + R A + + L++ + Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H Q +T + DP+ Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+Q +AF+TG D++ T Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P VT R K + + Y ++ G++ Sbjct: 696 AMKIFHLDSPKDVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRK----------- 741 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A+ F E +P ++ + + +A ++ Sbjct: 742 -----RAKEFIDNYFEQYP----------------------------QIRDYMDKAVQEA 768 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 769 REKGYAETIMHRRRYLPDIHAKNF---------NVRSFA------ERTAINSP------- 806 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI------VLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K ++ VL VHDE++ + P + Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETV 855 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 856 KKIVPEVMQSAV--RLDVPLIADSGWGHNWY 884 >gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] Length = 872 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 75/493 (15%), Positives = 150/493 (30%), Gaps = 117/493 (23%) Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 D E+ + E L + + G V H + + + L++++ Sbjct: 460 RDRLKETEMEQLF---DEIEMPLVFTLYDMEQNGVKVAAEALHIYGEQLGQKIVDLEKDI 516 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNN 279 LT G + ++L LF + GL T+T KL P+ ++ Sbjct: 517 YELT-GETFNINSPKQLGVILFEKLGLPHGKKTKTGYSTSADILDKLAPEYPVVSKILEY 575 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + A + R H + Sbjct: 576 RQLTKLKSTY-----------------------ADGLAGYIKDD---------GRIHGKF 603 Query: 340 DQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q IT +++P+ I + +R I +G V AD + IE R+LA +G Sbjct: 604 NQTITATGRISSTEPNLQNIPVRMELGRLIRKVFIPEDGYVFVDADYSQIELRILAHCSG 663 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 ++ + A++ D++ T ++ F+ +VT QR K + + Y + + Sbjct: 664 DEQLINAYKEARDIHRITASQVFHTPFEEVTDLQRRNAKAVNFGIVYGISSFGLSQ---D 720 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 + A +++ + + + ++ EHA E+ ++ T R + Sbjct: 721 LSITKKEAAQYIES------YFETYPSIKGFLDDAVEHAKENGYVTTVFGRRRPVPELSS 774 Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 S + + + G A Sbjct: 775 SNFMQ-RSFGERVAMNAPIQGTA-----------------------------------AD 798 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 + +N R+ L EN M + +VL VHDE++ Sbjct: 799 IMKIAMNGVNRR----------LKEN------------NMRS------KLVLQVHDELLI 830 Query: 635 ETPDTDEFNASML 647 E + + + + Sbjct: 831 EAYEEELEDVKEI 843 >gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] Length = 974 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 85/514 (16%), Positives = 165/514 (32%), Gaps = 131/514 (25%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 + +RL E L ++ + G+ V+ Q + T++ QE+ L G Sbjct: 565 MQEMERL--YQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERITRITQEIYDLA-G 621 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + GL T+T VL + ++ + R+ A Sbjct: 622 TSFNLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAKL 681 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + L++ + + R H Q +T Sbjct: 682 QSTY-VEGLLKVIRKE------------------------------TGRVHTRFHQTLTA 710 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +S+P+ I +R + + + AD + IE R+LA ++G++ + Sbjct: 711 TGRLSSSEPNLQNIPIRLEEGRRLRRVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 770 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF D++ T A F V P QVT R K + + Y + + Sbjct: 771 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNI----- 825 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++A+ F E P Sbjct: 826 --------------PQKEAKRFIESYFEKFP----------------------------G 843 Query: 520 LWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + + +Q E G + +RR +P ++ + + RS R+ Sbjct: 844 VKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQ---------LRSFA------ERT 888 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 +NT +Q + D++ M+ +A ++L VHDE+ Sbjct: 889 AMNTP------------------IQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDEL 930 Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + E P+ + +L N + +PLK + Sbjct: 931 IFECPNDELAALEVLVRDNMEN-AMTLSVPLKVD 963 >gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] Length = 882 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 82/521 (15%), Positives = 173/521 (33%), Gaps = 58/521 (11%) Query: 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 + + L+ E+ + + +++ + +L + I + ++ L S + Sbjct: 357 IVEDLRALFEDEKIEKIGYDAKEDVIIL---LSKKIDLKNLTYDSMIVEYL-LDSTASSF 412 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV---TVTR 169 +S + K+ + KG + D K E ++ F G + Sbjct: 413 EFQNIISKYDLGSYKDEQSLLGKGVKKKSYSDLEK---DELFKYFSFILNGSFKLKEIQM 469 Query: 170 EIFKRLEPLS---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 E + LE + E L + + G +V++ + + +D L + ++ Sbjct: 470 EKLEELEMVDLYREIELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLTSSIFEIS 529 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G + ++L LF + L + T+T +KL ++ Sbjct: 530 -GEEFNINSTKQLGEILFDKLRLTVIKKTKTGYSTAQDVLEKLVDESPI----------- 577 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + L++ ++ + R H +Q T Sbjct: 578 -----------------IENILEYRKLTKLKNTYIDGLKALINEKTGRIHSRFNQTGTST 620 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R +ASE LV D + IE RVLA ++ + ++A Sbjct: 621 GRISSTEPNLQNIPIRSEEGRLIRGAFLASEDSTLVDCDYSQIELRVLASLSKDPRMMEA 680 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 FE G D++ T + F+V VT R+ K + + Y ++ G+ Sbjct: 681 FEHGMDIHTKTASEVFHVDKEDVTDLLRSRAKAVNFGIVYGISDF---GLSRQLGITREL 737 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + D + + E + ++ T R ++ + ++ + Sbjct: 738 AKEYIDG------YFDNFKKVKEYMDYEIETGKKQGYVKTIFNR-RRYIPELSAKNFNIR 790 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + T G A K V VY + K NL L Sbjct: 791 SFGERIALNTPIQGSAADIIKIAMVK-VYGEIKKRNLKSKL 830 >gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117] gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117] Length = 870 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 86/491 (17%), Positives = 155/491 (31%), Gaps = 127/491 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VDV + L + + + + G + ++L Sbjct: 469 EMELPLIPVLFEMERAGVAVDVDRLNELRAHFTEQVDQATNDAFA-AIGHEVNLSSPKQL 527 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVE 296 + LF E L +T S L + F + A R A+ ++ L++ Sbjct: 528 QVVLFEELDLPRTKKIKTGFTTDAESLADLLVKTGHPFLVALMAYRDAIKLRQTVDGLLK 587 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 A + DGR+ T Q + + +P+ Sbjct: 588 ATHEDGRIHTT-------------------------------YAQTVAATGRLSSLNPNL 616 Query: 357 LQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R + EG + L+ D + IE R++A ++ ++ ++A++ GEDL+ Sbjct: 617 QNIPVRSEEGRRIRDVFMVGEGYQSLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHR 676 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 +R FNV P +VT + R+ K M L Y + K Sbjct: 677 YVGSRVFNVEPEEVTSEMRSKVKAMSYGLAYGLSSFGLSKQLKI---------------- 720 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +K + R + L +Q Sbjct: 721 -------------------------------GVDEARKLMKDYFDRFGAVRTYLRSVVDQ 749 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 ++G RR LP LN++ R+L R+ Sbjct: 750 ARKDGYTETIFGRRRY---------------LPE---------------LNSSDRRL-RD 778 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNAT---KAGY---DIVLTVHDEIVCETPDTD-EFN 643 L I Q + D++ M+ KAG ++L VHDE++ E + + E Sbjct: 779 IAERAALNAPI-QGSAADLVKVAMLRIDEELKAGEYKSRMLLQVHDELILEIAEGELEPV 837 Query: 644 ASMLYHLMTSN 654 ++ M Sbjct: 838 QELVTREMGQA 848 >gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] Length = 937 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 112/679 (16%), Positives = 202/679 (29%), Gaps = 162/679 (23%) Query: 12 SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71 I L G +AE I + L + V V H Sbjct: 386 CYIPLGHGGTDMFAEKPEQIAMGDAL-----------------ERLGALFADDAVLKVGH 428 Query: 72 NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM-EEGKELI 130 N ++ VL + + + TL+++ + + E KL + K++ Sbjct: 429 NLKYDIGVLAQH---GVTVAPYDDTLLMSFALDAGKHQHGLDELAKLHLDHVCLSFKDV- 484 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-------- 182 C + EY D V ++K L+ E Sbjct: 485 ---CGTGKSQIS------FAEVQLDRATEYAAEDAEVAWRLWKLLKLRLPLEGGTRVYEM 535 Query: 183 --QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 + L + + + G VD L+ E +++ E+ +L G + +L Sbjct: 536 VDRPLAAVVEGMERAGIMVDRDYLAKLSGEFANEMLRIEGEIHALA-GQPFAIGSPRQLG 594 Query: 241 TWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLV 295 LF + GL ++ T Q L ++ P A ++ R A Sbjct: 595 EILFDKMGLKGGRKGKSGDWSTDQNELERLERDGVPIARKILEWRQLA------------ 642 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + Q R H + ++DP+ Sbjct: 643 -------------------KLKSTYTDALQEQVNATTGRVHTSYSLVGAQTGRLSSTDPN 683 Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R IA+ G L+ AD + IE R+ A MA +AF G+D++ Sbjct: 684 LQNIPIRTEVGRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDDIHA 743 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F +V +D R K + ++ Y +A + + L+ Sbjct: 744 ATAIELFG----EVNRDTRGKAKTVNFSILYGIS---RWGLAGRLEITPDEAQALI---- 792 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + + E A + T +K W R+ + Sbjct: 793 --SRYFERFPGISDYISDTLETARARGYTETLFG--RKTW---FPRI-----------KA 834 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 +N +A G+ R+ +N + Sbjct: 835 ANQNERA------------------------------------GSERAAINAPIQ----- 853 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYH 649 G + I +A++R + + +A A ++L VHDE+V E P+ A ++ Sbjct: 854 ----GTSADLIKRAMAR--MPGALADAGLADVKMLLQVHDELVFEAPEDKAAAAGEVIRA 907 Query: 650 LMTSNPSWAKGL--PLKAE 666 +M A L PL+ E Sbjct: 908 VMMGAAEPALKLSVPLEVE 926 >gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2] Length = 892 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 102/648 (15%), Positives = 191/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E ++ + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVED--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD+ + L D T+ ++ + + ++L+ LF + + T+ Sbjct: 508 IAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13] Length = 851 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 88/502 (17%), Positives = 164/502 (32%), Gaps = 121/502 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + ++ G VD + E +L++E+ +L G + + Sbjct: 446 MEEIELPLVEVLASMEHTGVLVDQDGVRRFGDALSGEIRQLEEEIYTLA-GKQFNIASPK 504 Query: 238 KLKTWLFLETGLHLEDLTETTC-------QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +L LF + + + T VL + P + R ++ Sbjct: 505 QLGQVLFEDLEIPHPQGKKKTKTGSFSTNAEVLEKLRGAYPIVSLILRYRQLTKLNSTY- 563 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ + DG R H Q T Sbjct: 564 VAGLLKTVAPDG-------------------------------RIHTCFKQTETRTGRIS 592 Query: 351 TSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +++P+ I + +R +A G+ L+ AD + IE R+LA + + +AF +G Sbjct: 593 STEPNMQNIPVRTELGKEMRKFFVAPRGRILLDADYSQIELRILANLCEDANMQQAFLSG 652 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 D++ +T A+ F V VT R+ K + + Y GA + + G+++ Sbjct: 653 ADIHASTAAQVFGVPREAVTPQMRSAAKAVNFGIIYGIGAYSLSQ---DIGVSVREADRY 709 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 +K + + E A F+ T R Sbjct: 710 IK------RYLENFPRVEQFMTRIVEDAERTGFVSTLFGR-------------------- 743 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 RR+VP + K++ + +GR R +NT + Sbjct: 744 -----------------RREVPEL-----KSHNKIQQAAGR----------RIAMNTPIQ 771 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 G + I A+ R + + ++L VHDE++ E D A+ Sbjct: 772 ---------GTAADIIKIAMIR---VYRRLAREQLDARLILQVHDELIVEAAVQDADRAA 819 Query: 646 MLY-HLMTSNPSWAKGLPLKAE 666 ++ M +W +PL AE Sbjct: 820 VILREEMEH--AWDMAVPLTAE 839 >gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis] Length = 871 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 103/659 (15%), Positives = 204/659 (30%), Gaps = 154/659 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 AF FD D + L+E E D V+H + V + ++ + Sbjct: 331 IAFSFDGTT-----LYSDVERLEDLREIFEREDCEFVSHEIK-DFLVKLSYKGIECK-SK 383 Query: 93 WICTLVLARSNGLPSALKAVGEALKLS--------SQKMEEGKELIARFCKGETHECLYD 144 ++ T ++A + + LK + +GK+ E Y Sbjct: 384 YLDTAIMAYLLNPSESNYDLDRVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYI 443 Query: 145 RNKPNH----REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + NH ++ F E ++ K L E L + +++ G+ +D Sbjct: 444 CGRCNHLFELKDKLMSFIE--------EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLD 492 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + L++ +D +++ ++ G + ++L +LF + L + T+T Sbjct: 493 RNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKTKTGYS 551 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 ++LT V +++ ++ Sbjct: 552 TDSEVLEQLTAYNDIVSE----------------------------IIEYRQLTKLKSTY 583 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGK 374 F P R H Q++ +++P+ I +R I + Sbjct: 584 IEGFLPLMD-ENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDG 642 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 +V AD + IE RVLA ++ ++ ++AF ED+++ T + F V P VT + R KV Sbjct: 643 YIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKV 702 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y +A ++ + + + + E A Sbjct: 703 VNFGIIYGISDY---GLAKDLKISRKEAKEYIDN------YFEKYKGVKEYIEKVIRFAK 753 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 E+ ++ I +RR +P + + Sbjct: 754 ENGYV-------------------------------------TTIMNRRRYIPEINSRNF 776 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + R +NT +Q + DI+ M Sbjct: 777 T---------------QRSQAERLAMNTP------------------IQGSAADIIKMAM 803 Query: 615 MNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + ++L VHDE+V +T D E +L M + +PL E Sbjct: 804 VKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVIK--LKVPLVVE 860 >gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97] gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97] Length = 879 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 98/661 (14%), Positives = 211/661 (31%), Gaps = 158/661 (23%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQV-LKEALE 62 +D E+ D G+ ++ ++ F+F ++ H+ V Q+ L+ A + Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMSENEAFYVPLTHNYLGVSKQISLESAKK 370 Query: 63 NTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 ++ + HN ++ +++ F L++P ++ T++LA + AL+L Sbjct: 371 AIELIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLALRL 429 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KR 174 + + + L+ + + +Y D +T + K Sbjct: 430 FNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFLKN 476 Query: 175 LE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 LE PL E + + + + G +D L + + E L +E+ +L Sbjct: 477 LEIPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIYTLCED- 535 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF + L +T ++VL + P ++ + R ++ Sbjct: 536 RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLHALLDKHPVITKILDYR-ELAKL 594 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L++ D + SR + Q T Sbjct: 595 YSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGTAT 625 Query: 347 PTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I + +SC +A +G D + IE R+LA + ++ L A Sbjct: 626 GRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNA 685 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F ED++ T F + + R++ K + L Y G ++ ++ + + Sbjct: 686 FTNDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHL 738 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 K + + + Sbjct: 739 A--------------------------------------------KSYIEKYFENFTSIK 754 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + +NG + SGR + Y + Sbjct: 755 KYFETVKNEAKQNG-----------------------FITTLSGR----------KRYFD 781 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCETPD 638 + + Y + +I+Q + DI+ M+ K + ++L +HDE++ E D Sbjct: 782 FENAKPMQIAMYERESINSILQGSAADIIKLAMLEINKELNEDKKLILQIHDELIFEVKD 841 Query: 639 T 639 Sbjct: 842 D 842 >gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] Length = 887 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 89/511 (17%), Positives = 172/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ KL+ ++ G + ++L Sbjct: 489 EIPTARVLARMEMNGMKVETSTLIQLQNEFAVKLKKLEDKIYGQA-GEKFNLNSPKQLGH 547 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+T VL K +P ++ + R A + + L++ + Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQIAKIQSTY-VKGLLDVI 606 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H Q +T + DP+ Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+Q +AF+TG D++ T Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P +VT R K + + Y ++ G++ + Sbjct: 696 AMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E +P ++ + +++A ++ Sbjct: 750 -------------YFEQYP----------------------------QIKDYMNKAVQEA 768 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A I +RR +P ++ KK + R+ R+ +N+ Sbjct: 769 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 806 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K +V+ VHDE++ + P + Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETI 855 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] Length = 872 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 83/525 (15%), Positives = 179/525 (34%), Gaps = 72/525 (13%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + AF F + V D + LKE E H + V + ++ Sbjct: 328 EIKKIAFSFGNDTVY-IDGFQI----KDLKEIFEKEKFEFTTHEIK-DFLVKLSYKGIEC 381 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 +++ T ++A + + LK + E + F KG D+ K Sbjct: 382 K-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEV--FGKG------RDKKKL 432 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRL----------EPLSSKEQELWYLDQTINDRGYC 198 L C V + ++ ++L L E L + +++ G+ Sbjct: 433 EEIGEDILADYICSRCVHL-FDLREKLMNFIEEMDMKRLLLEIEMPLVEVLKSMEVSGFT 491 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 +D + L+Q ++ ++ ++ G + ++L +LF + L + T+T Sbjct: 492 LDKEVLKELSQKINDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG 550 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 ++L P N +V + +++ ++ Sbjct: 551 YSTDSEVLEQLVP-------------------YNNIVNDI---------IEYRQLTKLKS 582 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 F P +R H Q++T +++P+ I +R I + Sbjct: 583 TYIDGFLPLMD-ENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAFIPRTK 641 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 +V AD + IE RVLA ++G++ +++F ED+++ T + F V +VT + R Sbjct: 642 DGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAA 701 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y ++ ++ + + + + E Sbjct: 702 KAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYIEKIVRF 752 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 A E+ ++ T R ++ + +SR ++ + G A Sbjct: 753 AKENGYVITIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSA 796 >gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1] gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1] Length = 1040 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 97/499 (19%), Positives = 161/499 (32%), Gaps = 117/499 (23%) Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 + + ++R+ L E L L + + D G VD L +Q + E + + Sbjct: 624 ILTEQVEYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFE 683 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L+ LF + GL T+T + ++L F + Sbjct: 684 -AIGREVNLSSPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYF 742 Query: 285 RSAVLKLNTLV---EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 R L + + + SDGR+ T Q Sbjct: 743 RDRSKLLQVVRNLGDRIASDGRIHTT-------------------------------FGQ 771 Query: 342 IITHLPTSITSDPDPLQIISD-----CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395 + + DP+ I + +R IA L+ AD + IE R++A ++G+ Sbjct: 772 TVAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGD 831 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + + AF++GEDL+ + A F VAP VT QR K L Y A +A Sbjct: 832 EGLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAF---GLAGQL 888 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ HL++T S Sbjct: 889 RISQGEAKHLMETYF--------------------------------------------S 904 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 R + + L + G RR LP R+ N Sbjct: 905 RFGAVRDYLEHIVSEARRVGYTETMWGRRRY---------------LPGLRATNRVVAEN 949 Query: 576 N-RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634 R+ LN + G + + QA+ R + M A G I+L +HDE+V Sbjct: 950 ARRAALNAPIQ---------GSAADLMKQAMLR---VDAAMAAAGLGSRILLQIHDELVF 997 Query: 635 ET-PDTDEFNASMLYHLMT 652 E P + ++ MT Sbjct: 998 EVAPGEVDALRRVVTEAMT 1016 >gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1] gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2] gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1] gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1] Length = 892 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 102/648 (15%), Positives = 191/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E ++ + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVED--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD+ + L D T+ ++ + + ++L+ LF + + T+ Sbjct: 508 IAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] Length = 905 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 108/651 (16%), Positives = 176/651 (27%), Gaps = 170/651 (26%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 AF D D + A L + + H++ Sbjct: 362 AFATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAK------------------ 403 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 +L LA L V L + + G+ + E L R P + Sbjct: 404 -GPSLALAAR---GFTLAGVAADTALEAYLAQSGRRSFDL--EPLAEEVLGRRLSPAGAD 457 Query: 153 AWRLFGEYCKGDVTVTRE-------------IFKRLEP------LSSKEQELWYLDQTIN 193 + D R+ + +L L+ E L + + Sbjct: 458 E-NQGTLFADEDAEAERQMAAAHAVLDLADALRGKLAETGAEQLLTDIELPLVGVLAEME 516 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G +D L L + E K + + ++L+ LF G+ Sbjct: 517 QVGIAIDERLFQDLEKGFSGEAAKEVDAARAEAGVETLNLGSPKQLQEVLFENLGMPKTK 576 Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQF 310 +T S L Q F + + R + L ++++ D R+ T Sbjct: 577 KIKTGYTTDADSLAWLQAQTQHPFLDHLLRWREVNRLKTVVEGLSKSVSPDTRIHTT--- 633 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 +Q+I + DP+ I +R Sbjct: 634 ----------------------------YNQMIAATGRLSSVDPNLQNIPIRTLEGQQIR 665 Query: 366 SCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 IA G + L+ AD + IE R++A ++ + ++AF +GEDL+ T A+ F+V V Sbjct: 666 KAFIAGPGYESLMTADYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAV 725 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 + R K M L Y A + G+ A Sbjct: 726 EPEHRRRIKAMSYGLAYGLSAFGLSQ---QLGIETGEAA--------------------- 761 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544 K R + + LH Q G RR Sbjct: 762 -----------------------KMMEDYFQRFGGVRDYLHDLVVQARATGYTETMFGRR 798 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 LP L + RQ RE L I Q Sbjct: 799 RY---------------LP---------------DLASDNRQ-RREMAERMALNAPI-QG 826 Query: 605 VSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 + DI+ M+ + ++L VHDE+V E + L Sbjct: 827 SAADIIKVAMIRVREGLREQQLKSRMLLQVHDELVLEIAPGEAPRVEELVR 877 >gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC] gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC] Length = 868 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 94/551 (17%), Positives = 175/551 (31%), Gaps = 69/551 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ + + S + L+ I V A L L + G + Sbjct: 355 LKDFFADKATQFFGYRSKRDNHALRN---------SGIDVHVTADLV-LAEHLVSGGAKI 404 Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ME G + F K L ++ P + FG + + +F +L Sbjct: 405 SFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPLQY--FGMLASKLLAIKNYLFVKL 462 Query: 176 EP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + EQ L + + G +D L++ + E + QE+ L G Sbjct: 463 EEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDL-VGC 521 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + ++L L+ G+ D ++T VL + + ++ Sbjct: 522 EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEVLEALEDRHEIIPKIL------------ 569 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 F + P Q R H +Q+ T Sbjct: 570 -------------------MFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRL 610 Query: 350 ITSDPDPLQII-----SDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 DP+ I +R + + + AD + IE R LA ++ ++ +AF Sbjct: 611 SCQDPNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFN 670 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +GED++ T ++ FNV QVTK QR K + L Y A ++ ++++ Sbjct: 671 SGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGLVYGQQAY---GLSKILKISVSEAQ 727 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L+ A + A F E ++ +G ER+ W + Sbjct: 728 GLMDAYFAR--YPLAAEFITQTIEQASKNQKVTTMLGR--ERILSDW-ESSPGARAASGR 782 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNT 582 L T G A K + + + + L+L L++ + + Sbjct: 783 L---AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRS 839 Query: 583 TTRQLTREYTY 593 ++ Sbjct: 840 LVQEKMESAME 850 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 595 GKLTENI-VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646 G+L N +Q + +++ M+N + ++L +HDE++ E P + E S+ Sbjct: 781 GRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSL 840 Query: 647 LYHLMT 652 + M Sbjct: 841 VQEKME 846 >gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276] gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s] gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768] gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222] gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074] gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301] Length = 866 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 94/551 (17%), Positives = 175/551 (31%), Gaps = 69/551 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ + + S + L+ I V A L L + G + Sbjct: 353 LKDFFADKATQFFGYRSKRDNHALRN---------SGIDVHVTADLV-LAEHLVSGGAKI 402 Query: 117 KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + ME G + F K L ++ P + FG + + +F +L Sbjct: 403 SFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPLQY--FGMLASKLLAIKNYLFVKL 460 Query: 176 EP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E + EQ L + + G +D L++ + E + QE+ L G Sbjct: 461 EEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDL-VGC 519 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + + ++L L+ G+ D ++T VL + + ++ Sbjct: 520 EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEVLEALEDRHEIIPKIL------------ 567 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 F + P Q R H +Q+ T Sbjct: 568 -------------------MFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRL 608 Query: 350 ITSDPDPLQII-----SDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 DP+ I +R + + + AD + IE R LA ++ ++ +AF Sbjct: 609 SCQDPNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFN 668 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +GED++ T ++ FNV QVTK QR K + L Y A ++ ++++ Sbjct: 669 SGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGLVYGQQAY---GLSKILKISVSEAQ 725 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 L+ A + A F E ++ +G ER+ W + Sbjct: 726 GLMDAYFAR--YPLAAEFITQTIEQASKNQKVTTMLGR--ERILSDW-ESSPGARAASGR 780 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNT 582 L T G A K + + + + L+L L++ + + Sbjct: 781 L---AVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRS 837 Query: 583 TTRQLTREYTY 593 ++ Sbjct: 838 LVQEKMESAME 848 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 595 GKLTENI-VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646 G+L N +Q + +++ M+N + ++L +HDE++ E P + E S+ Sbjct: 779 GRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSL 838 Query: 647 LYHLMT 652 + M Sbjct: 839 VQEKME 844 >gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] Length = 905 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 76/481 (15%), Positives = 147/481 (30%), Gaps = 122/481 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E+ L + + +G VD + + ++ + +++++ + G+ + ++L Sbjct: 505 ELEEPLSIVLAEMERQGISVDREMLEQIGFELEKKIAVIEEDIYQIA-GVSFNINSPQQL 563 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + L +T + ++L Q V Sbjct: 564 GKVLFEQLELPPLKKIKTGYSTDAETLEELAGQHCIVEK--------------------- 602 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L+F + Q R + H Q++T +++P+ I Sbjct: 603 -------ILEFRHLVKLNSTYVKGLLGQL--RDGKVHTTFQQMVTATGRLSSTEPNLQNI 653 Query: 360 I-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R + S G +L AD + IE RVLA + + ++F+TGED++ T Sbjct: 654 PIRMEEGRKLRKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTGEDVHARTA 713 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + F V QVT D R K + L Y +A + ++ Sbjct: 714 SEVFGVPLEQVTPDMRRKAKAVNFGLMYGLTDF---GLARDIRIPRKEAKFYIE------ 764 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 + R S + L+ + +E Sbjct: 765 --------------------------------------RYFQRYSGVKKYLNDSVVNAME 786 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT-REYT 592 G+ L+ L L ++ N T RQ R Sbjct: 787 TGET------------------RTLLNRLRQTPELNHQ---------NRTVRQFGQRIAM 819 Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY 648 +Q + DI+ M+ +A +++L VHDE++ E + + Sbjct: 820 NSP------IQGTAADIMKLAMIRVDEAMKGLEANLLLQVHDELLLEVSARALPEVAQIV 873 Query: 649 H 649 Sbjct: 874 K 874 >gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] Length = 904 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 88/482 (18%), Positives = 163/482 (33%), Gaps = 67/482 (13%) Query: 129 LIARFCKGETHECLYDRNKP------NHREAWRLFGEYC-KGDVTVTREI------FKRL 175 L A E +DR + +A + L Sbjct: 440 LAAYLLNPEERNYAWDRLRAMLFAGEELPDAVDEVHPDAQGMAALALMHVLGPRIKSAGL 499 Query: 176 EPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + L++ E L + + G +D+ V+ +L + + G + R Sbjct: 500 DELTANLEIPLIPVLADMEKAGITIDLDAFADFLTEVNERINELTRVIHERA-GEPFNIR 558 Query: 235 CLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +++ T LF GL T T VL + R + + Sbjct: 559 SSQQMATVLFDSLGLKPGGKTPKGALSTANSVLEKLSGQHEIITDILEYR-KMEKLRSTY 617 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 L L + +N++G R H +Q+ T Sbjct: 618 LEPLPKLVNANG-------------------------------RIHTNFNQLATATGRLS 646 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +S P+ I +R+C A EG +L AD + +E RVLA +G+ + AFE Sbjct: 647 SSGPNLQNIPIRGDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSAFEHD 706 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T A F+ PA VT D+R K + L Y G QK++ G+ +N Sbjct: 707 EDIHSRTAALLFDRDPADVTSDERRNAKTINFGLIYGMGP---QKLSRELGIKINEAKEF 763 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + ++ + + + ++ E E ++ T R ++ + HS ++ ++ Sbjct: 764 IA------KYFEKLDVLKEFYDSVVEQGREKGYVTTLSGR-RRLLPELHSTSPQILSQAR 816 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + T+ G A K + + + K+ L+L L+ N + Sbjct: 817 RQAINTVIQGSAADIIKMAMIKVADNAEIKHLGGRLILQIHDELLVEGPEENIEEIGKLL 876 Query: 585 RQ 586 ++ Sbjct: 877 QK 878 >gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 911 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 93/526 (17%), Positives = 185/526 (35%), Gaps = 67/526 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + + + D+ +++N KA NL I +++A L S+ + + Sbjct: 398 VVKFISELDIKFISYN-------FKALLNLGISFKSMYMDMMIAYH--LISSQTKIDPII 448 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 ++ E K+ F K + G D E+ L+ Sbjct: 449 PITEYSKLEPKDFKTAFGKVNVELITAQDFSKYLSD--ISIGILAIYD-----ELNYLLK 501 Query: 177 P------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L E L + + +G +DV + ++ E K+++ + G Sbjct: 502 KEDLYKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEA-GEE 560 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF++ L T+T + + L + Sbjct: 561 FNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI-------------- 606 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 R L + ++ P SR H +QI T Sbjct: 607 -------------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTSFNQIGTATGRLS 652 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +S+P+ I +R IA EGK L+ D + +E RVL M+ ++ ++A+ Sbjct: 653 SSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREE 712 Query: 406 EDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +DL+ T R FN+ ++ V+++QR I K++ ++ Y +A + + + Sbjct: 713 KDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASE 769 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 +K E++ F + + E EH G K+ S+ + ++ Sbjct: 770 YIK--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQA 822 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + T+ G A K+ V + + KDK ++ L+L L++ Sbjct: 823 ERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHDELIF 868 >gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 911 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 93/526 (17%), Positives = 185/526 (35%), Gaps = 67/526 (12%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + + + D+ +++N KA NL I +++A L S+ + + Sbjct: 398 VVKFISELDIKFISYN-------FKALLNLGISFKSMYMDMMIAYH--LISSQTKIDPII 448 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 ++ E K+ F K + G D E+ L+ Sbjct: 449 PITEYSKLEPKDFKTAFGKVNVELITAQDFSKYLSD--ISIGILAIYD-----ELNYLLK 501 Query: 177 P------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L E L + + +G +DV + ++ E K+++ + G Sbjct: 502 KEDLYKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEA-GEE 560 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L LF++ L T+T + + L + Sbjct: 561 FNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI-------------- 606 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 R L + ++ P SR H +QI T Sbjct: 607 -------------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTSFNQIGTATGRLS 652 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +S+P+ I +R IA EGK L+ D + +E RVL M+ ++ ++A+ Sbjct: 653 SSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREE 712 Query: 406 EDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 +DL+ T R FN+ ++ V+++QR I K++ ++ Y +A + + + Sbjct: 713 KDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASE 769 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 +K E++ F + + E EH G K+ S+ + ++ Sbjct: 770 YIK--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQA 822 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + T+ G A K+ V + + KDK ++ L+L L++ Sbjct: 823 ERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHDELIF 868 >gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3] Length = 829 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 87/491 (17%), Positives = 155/491 (31%), Gaps = 129/491 (26%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + G +D + V + K+ +E+ G + + Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYA-GYEFNIGSPK 487 Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L + LF + L T+T VL S P + R + + L Sbjct: 488 QLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYRALT-KLQNTYVTGL 546 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ + DG R H Q T +++P Sbjct: 547 LKVVGEDG-------------------------------RIHSTFKQTETRTGRISSAEP 575 Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I + +R A +G LV AD + IE RVLA ++G++ KAF G D++ Sbjct: 576 NIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T ++ FN VT D R+ K + + Y GA + K Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKD------------------ 677 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 IG + + + R S+ S + + + Q Sbjct: 678 -----------------------------IGVSVPKASEYIRSYLSKYSGIAHYMEQTVA 708 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + +G R R Y+ + Sbjct: 709 KAKRDGYVETMFGR---------------------------------RRYIKELAAKNKN 735 Query: 590 EYTYGGKLTEN-IVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETPDT-DE 641 +G ++ +N +Q + DI+ M+ ++G ++L VHDE++ E + E Sbjct: 736 LQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLEESGLDARLILQVHDELIVEAKEDCAE 795 Query: 642 FNASMLYHLMT 652 A +L M Sbjct: 796 KVALLLKEEME 806 >gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] Length = 879 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 94/663 (14%), Positives = 206/663 (31%), Gaps = 162/663 (24%) Query: 6 IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVLKEA 60 +D E+ D G+ ++ ++ F+F ++ H + L+ A Sbjct: 313 LDKESIIAFDTETTGLD--TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQI--SLQSA 368 Query: 61 LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + ++ + HN ++ +++ F L++P ++ T++LA + AL Sbjct: 369 KKAIELIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLAL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ + + +Y D +T + Sbjct: 428 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 474 Query: 173 KRLE-PLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LE PL E + + + + G +D L + + E L +E+ +L Sbjct: 475 KNLEAPLLELAKNCEFDFIRIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEIYTLCE 534 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL++ P ++ + R + Sbjct: 535 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPIIPKILDYR-ELA 592 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D + SR + Q T Sbjct: 593 KLYSTYCEPLLKLALKD-----------------------------KNSRIYSSFLQTGT 623 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC +A +G + D + IE R+LA + ++ L Sbjct: 624 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLL 683 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF ED++ T F + + R++ K + L G+ Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLI--------------YGMGY 725 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 T + +K + K + + Sbjct: 726 KTLSQNLKIEAHL---------------------------------AKSYIEKYFENFTS 752 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +NG R+ Y Sbjct: 753 IKKYFETVKNEAKQNGFITTLNSRKR---------------------------------Y 779 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCET 636 + + + Y + +I+Q + D++ M+ K + ++L +HDE++ E Sbjct: 780 FDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEIDKELNEDKKLILQIHDELIFEV 839 Query: 637 PDT 639 D Sbjct: 840 KDD 842 >gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 887 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 108/671 (16%), Positives = 202/671 (30%), Gaps = 160/671 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 FA D P LK LE++ V + RT + L I Sbjct: 344 FALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAES 398 Query: 93 WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+LA ++ ++ E+ + +N Sbjct: 399 LSFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDLEVYGKG-----------KNAKIP 447 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201 + F + L+ L EQ+ Y + + G V Sbjct: 448 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 507 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260 + L V +L++++ G + ++L LF + GL + T+T Sbjct: 508 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 566 Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL+ K+ +P + R S+ + L++ ++ Sbjct: 567 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDE------------------ 607 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 R R H Q +T + DP+ I +R + S Sbjct: 608 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSP 655 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 + D + IE RVLA ++ + +AF+TG D++ T + F+++ +VT QR Sbjct: 656 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 715 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y ++ ++ + E +E +M Sbjct: 716 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFID-----EYFEQYPGIQAYM------ 761 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550 +A + E G A I +RR +P ++ Sbjct: 762 ---------------------------------DRAVKDAREKGYAETIMHRRRYLPDIH 788 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + RS R+ +N+ +Q + DI+ Sbjct: 789 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 815 Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 M+N K +V+ VHDE++ + P + + +M + +PL Sbjct: 816 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 873 Query: 664 KAE-GYESKRY 673 A+ G+ Y Sbjct: 874 VADAGWGHDWY 884 >gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 882 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 73/410 (17%), Positives = 153/410 (37%), Gaps = 48/410 (11%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 +E+ L E L + ++ +G +D + ++ + L++E+ Sbjct: 472 KEKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEA 528 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G + ++L LFL+ L T+T + + L+ Q Q+ N + Sbjct: 529 -GEEFNINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLL----- 582 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ ++ P R H QI T Sbjct: 583 ----------------------EYRKLAKLKNTYVDPIPKMV-KFDDRIHTCYHQIGTVT 619 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I +R IA +G KL+ D + +E RVLA ++ ++ +KA Sbjct: 620 GRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKA 679 Query: 402 FETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 ++ +DL+ T + F + +V+++QR + K++ ++ Y +A G+++ Sbjct: 680 YQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPF---GLAKELGISVK 736 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A +K ++ F + E +H + + G K+ HS+ + Sbjct: 737 DAAEYIK--RYFAQYPRVAQFETEIIEFAEQHGYVETYFGR-----KRIIDGIHSKNRMV 789 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 N+ + T+ G A K+ + + K ++ L+L L++ Sbjct: 790 KNQAERMAVNTVVQGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIF 839 >gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC] gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC] Length = 887 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 89/511 (17%), Positives = 171/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ +L+ ++ G + ++L Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFTVKLKELEDKIYGQA-GEKFNLNSPKQLGH 547 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+T VL K +P ++ + R A + + L++ + Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H Q +T + DP+ Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+Q +AF+TG D++ T Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P QVT R K + + Y ++ G++ + Sbjct: 696 AMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E +P ++ + + +A ++ Sbjct: 750 -------------YFEQYP----------------------------QIKDYMDKAVQEA 768 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A I +RR +P ++ KK + R+ R+ +N+ Sbjct: 769 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 806 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K +V+ VHDE++ + P + Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 855 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228] gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228] Length = 847 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 101/677 (14%), Positives = 208/677 (30%), Gaps = 167/677 (24%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEA 60 + D ET + ID + ++ F+F ++ H L+ A Sbjct: 287 IAFDTET-TSIDTKEA---------KIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSA 336 Query: 61 LENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 + ++ + HN ++ +++ F L +P ++ T++LA + AL Sbjct: 337 KKAIELIFKHFIIGHNLKYDFKIIENNFKLSLP-QKYADTMILAWLKNPSLRVNMDDLAL 395 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---- 172 +L + + + L+ + + +Y D +T + Sbjct: 396 RLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYLYFL 442 Query: 173 KRLEPLSSKEQELWYLD-----QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 K LEP + + D + + G +D L + + E L +E+ +L Sbjct: 443 KNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCE 502 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRAS 284 + +++ LF + L +T ++VL+ P ++ + R + Sbjct: 503 D-RFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYR-ELA 560 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + L++ D SR + Q T Sbjct: 561 KLYSTYCEPLLKLALKD-----------------------------ENSRIYSSFLQTGT 591 Query: 345 HLPTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + DP+ I + +SC IA EG + D + IE R+LA + ++ L Sbjct: 592 ATGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLL 651 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ ED++ T F + + R+I K + L Y G ++ ++ + Sbjct: 652 NAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMG---YKTLSKNLKIEA 704 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 N K + + Sbjct: 705 NLA--------------------------------------------KTYIEKYFENFTS 720 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + + + NG + SGR + Y Sbjct: 721 IKSYFEKVKNEAKANG-----------------------FISTLSGR----------KRY 747 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---DIVLTVHDEIVCET 636 + + + Y + +I+Q + DI+ M+ K ++L +HDE++ E Sbjct: 748 FDFENAKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEV 807 Query: 637 -PDTDEFNASMLYHLMT 652 + E +M Sbjct: 808 KDELCENFVKKTSDIME 824 >gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 884 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 73/410 (17%), Positives = 153/410 (37%), Gaps = 48/410 (11%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 +E+ L E L + ++ +G +D + ++ + L++E+ Sbjct: 474 KEKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEA 530 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286 G + ++L LFL+ L T+T + + L+ Q Q+ N + Sbjct: 531 -GEEFNINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLL----- 584 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 ++ ++ P R H QI T Sbjct: 585 ----------------------EYRKLAKLKNTYVDPIPKMV-KFDDRIHTCYHQIGTVT 621 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I +R IA +G KL+ D + +E RVLA ++ ++ +KA Sbjct: 622 GRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKA 681 Query: 402 FETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 ++ +DL+ T + F + +V+++QR + K++ ++ Y +A G+++ Sbjct: 682 YQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPF---GLAKELGISVK 738 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 A +K ++ F + E +H + + G K+ HS+ + Sbjct: 739 DAAEYIK--RYFAQYPRVAQFETEIIEFAEQHGYVETYFGR-----KRIIDGIHSKNRMV 791 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 N+ + T+ G A K+ + + K ++ L+L L++ Sbjct: 792 KNQAERMAVNTVVQGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIF 841 >gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec] gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec] Length = 911 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 95/626 (15%), Positives = 171/626 (27%), Gaps = 149/626 (23%) Query: 47 CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106 + L + L + D H+ L + LA LP Sbjct: 384 LTAGDSV--ALGDWLADPDRAKAGHDLKGPMLALAEA---GFTLAGVTSDTALAAYLALP 438 Query: 107 S--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC--- 161 + AL+ L + + Sbjct: 439 GQRSFDLADLALRY----------LHRELKSDAPSNGQLTLDGSGEADEAEADAIRARAA 488 Query: 162 -----KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216 D + R RL L E L + T+ G D L + E + Sbjct: 489 LELADALDGDLERRSAARL--LREMELPLVTILATMERAGIAADEDHLLELQKHYGGEVS 546 Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 + + + G + ++L+ LF E L +T + L Q+ Sbjct: 547 DVAAQAHGI-VGRTFNLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDHP 605 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 + L +R + P + R H Sbjct: 606 L--------------------------IPVLLHHRDVARLKTVVDSLIPM--IDDAGRIH 637 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLA 390 +Q+I ++DP+ I +R + +G L+ AD + IE R++A Sbjct: 638 TTFNQMIAATGRLSSTDPNLQNIPIRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMA 697 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++G+ ++AF +GEDL+ A++F + ++V + R K M L Y A Sbjct: 698 HLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAF---G 754 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A G+ + ++ Sbjct: 755 LAGQLGIAPDEA--------------------------------------------REQM 770 Query: 511 RQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569 +R + + L +Q +G I +RR +P + Sbjct: 771 DAYFARFGGVRDFLRGVVDQARRDGYTETIMGRRRYLPDL-------------------- 810 Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623 T+ R+ L I Q + DI+ M+ +A Sbjct: 811 ------------TSDNTQRRQMAERMALNAPI-QGSAADIIKIAMLGVGRALRSRDLSSR 857 Query: 624 IVLTVHDEIVCETPDTDEFNASMLYH 649 ++L VHDE+V E + L Sbjct: 858 LLLQVHDELVLEIAPGERAEVEALVR 883 >gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 887 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 108/671 (16%), Positives = 202/671 (30%), Gaps = 160/671 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 FA D P LK LE++ V + RT + L I Sbjct: 344 FALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAES 398 Query: 93 WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+LA ++ ++ E+ + +N Sbjct: 399 LTFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDLEVYGKG-----------KNAKIP 447 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201 + F + L+ L EQ+ Y + + G V Sbjct: 448 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 507 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260 + L V +L++++ G + ++L LF + GL + T+T Sbjct: 508 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 566 Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL+ K+ +P + R S+ + L++ ++ Sbjct: 567 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDE------------------ 607 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 R R H Q +T + DP+ I +R + S Sbjct: 608 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSP 655 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 + D + IE RVLA ++ + +AF+TG D++ T + F+++ +VT QR Sbjct: 656 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 715 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y ++ ++ + E +E +M Sbjct: 716 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFID-----EYFEQYPGIQAYM------ 761 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550 +A + E G A I +RR +P ++ Sbjct: 762 ---------------------------------DRAVKDAREKGYAETIMHRRRYLPDIH 788 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + RS R+ +N+ +Q + DI+ Sbjct: 789 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 815 Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 M+N K +V+ VHDE++ + P + + +M + +PL Sbjct: 816 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 873 Query: 664 KAE-GYESKRY 673 A+ G+ Y Sbjct: 874 VADAGWGHDWY 884 >gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 98/528 (18%), Positives = 188/528 (35%), Gaps = 73/528 (13%) Query: 58 KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117 + + D+ +++N KA NL +++A L S+ + L Sbjct: 2 IKFIAELDIKFISYN-------FKALLNLGFTFKSMYMDMMIAYH--LISSQTKMDVLLP 52 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 ++ E K+ F K L D G D EI L Sbjct: 53 ITEYSKVEAKDFKTTFGKTHIETLLVDEFARYLSN--IGLGILACYD-----EINHLLHK 105 Query: 178 ------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L E L + + +G +DV+ + ++ E K ++ + G Sbjct: 106 EELHNILIQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKTEKAIYEEA-GEEF 164 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF++ L T+T VL + ++ + + ++ Sbjct: 165 NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKT 224 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 ++TL ++S SR H +QI T Sbjct: 225 TYVDTLPNLVDS-------------------------------NSRIHTSFNQIGTATGR 253 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +S+P+ I +R +A EGK L+ D + +E RVL M+ ++ +KA+ Sbjct: 254 LSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIKAYR 313 Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +DL+ T R FN+ VT++QR I K++ ++ Y A +A + + Sbjct: 314 EEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAF---GLAKELKIPVKDA 370 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + +K E++ F + + E EH G K+ S+ + Sbjct: 371 SEYIK--KYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKA 423 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + + T+ G A K+ + + + KDK+++ L+L L++ Sbjct: 424 QAERMAVNTVIQGTAAEVLKKVMLKVYEVLKDKDDIALLLQVHDELIF 471 >gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725] gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725] Length = 907 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 93/550 (16%), Positives = 196/550 (35%), Gaps = 77/550 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-------GLPS 107 +KE N+D + +N K N I I L++A G+ Sbjct: 392 DKVKEFFRNSDSIFITYN-------FKPLLNEGIKIKNMDMDLMIAYHLISSQTKEGVEI 444 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L+ + + ++ + GKE E + L +R+K +G Sbjct: 445 PLEQLS-GIDIAPYSEKFGKEAPGNLSTEEYGKFLVERSK----GIMETYG-------IA 492 Query: 168 TREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 EI + LE L E L + + +G +D + +++ L +++ + Sbjct: 493 MEEIKGKNLLEVLKETEMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLNNLQKKIFEI 552 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF + L T+T +KL +++ + Sbjct: 553 A-GEEFNLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDEEVLEKLKNDGVEIASY------ 605 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 L++ ++ P R R H +QI T Sbjct: 606 ---------------------ILEYRKYAKLKNTYVDALPKLADSRD-RLHTTFNQIGTT 643 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +S+P+ I +R IA G L+ D + IE RVLA ++ ++ + Sbjct: 644 TGRLSSSNPNLQNIPVKTDEGMKIRQGFIADNGNVLMGIDYSQIELRVLAELSKDENLIA 703 Query: 401 AFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 A++ EDL+ T + F + +V+++QR I K + ++ Y A ++ G+ Sbjct: 704 AYKNNEDLHRVTAKKIFELEDGEEVSREQRIIAKTINFSIIYGKTAF---GLSKELGITQ 760 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + N E++ ++F + + ++ + + G ++ S+ Sbjct: 761 KEATDYI--NRYFEQYPKVKDFEKSIIAYAEKNGYTETYFGR-----RRIIEGILSKNKN 813 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGN 575 + N+ + ++ G A K+ + + + ++K ++ L+L L++ V Sbjct: 814 IKNQAERMAVNSVIQGTAAEILKKVMIEIFKVIENKEDISLLLQVHDELIFEIKEEKVEE 873 Query: 576 NRSYLNTTTR 585 R+ + R Sbjct: 874 YRTTIENIMR 883 >gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6] Length = 861 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 71/382 (18%), Positives = 128/382 (33%), Gaps = 39/382 (10%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 + E L + + G VD + E + + T + + Sbjct: 461 YNDIEFPLAQVLADMTRIGILVDKEGIEKFGVKMRSELEDVLTRIHMETGSASFNPNSPK 520 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLV 295 +L LF GL T+ + + L P + R + + L+ Sbjct: 521 QLGEMLFDTMGLPHGKKTQRGWSTDAETLEALRDYPLVEDILQYR-AYQKLNSTYVEGLL 579 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + + DGR+ A RTGR S QN+P + Sbjct: 580 KVIAEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIPIRTE--------------------- 617 Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 + +R+ +A G LV AD + IE R+LA + G++ +AF TGED++ +T A+ Sbjct: 618 ----LGSQLRAYFVARPGCVLVDADYSQIELRILAHVTGDEHMQQAFLTGEDIHRSTAAK 673 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475 + + QVT R+ K + + Y GA + G+++ +K A Sbjct: 674 IYGLPLEQVTPRLRSSAKAINFGIMYGKGAYSLS---KDIGVSVKEADAFLKNYLATFPK 730 Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535 + A ++ T R +++ + S + + T G Sbjct: 731 ------VSGYMDKTISDARSCGYVSTLFGR-RRSLPELASNNHNIRASGERMARNTPIQG 783 Query: 536 KAIIARKRRDVPLVYMKKDKNN 557 A K V + +D+ Sbjct: 784 TAADVIKLAMVRVWRRLRDEKM 805 >gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] Length = 878 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 81/505 (16%), Positives = 149/505 (29%), Gaps = 137/505 (27%) Query: 175 LEPLSSKEQELWYLDQT---------INDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 LE L E E YL + G V+ + +L++ + Sbjct: 466 LEKLREAEMEELYLTIERPTVATLYDMEKYGITVEKDALKEYGDQLVGRIEELEKNIYEQ 525 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + + T+T +L P + R Sbjct: 526 A-GKTFNINSPKQLGVILFEDLKMPFAKKTKTGYSTSADILEKLAPDYPIVSNILEYRQL 584 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + L + DG+ H Q Sbjct: 585 TKLKSTYA-DGLAAFIQEDGK-------------------------------IHSIFHQK 612 Query: 343 ITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397 +T +SDP+ I + +R + G V AD + IE RVLA MAG++ Sbjct: 613 VTATGRLSSSDPNLQNIPIRMPLGRAIRKVFVPDSGYVFVSADYSQIELRVLAHMAGDEH 672 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + A+ GED++ T ++ F V +VT R K + + Y A ++ + Sbjct: 673 LIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNFGIVYGISAF---GLSQDLKI 729 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + A + +P Sbjct: 730 SRKE----------------ASEYIDKYFATYP--------------------------- 746 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 +T +G A+K V +Y + + S + + R G R Sbjct: 747 ----------GIKTYLDGNVAFAKKEGYVKTLYGRVR----PIPELSSSNFMQRSFGE-R 791 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631 +N++ +Q + DI+ M+ K ++L +HDE Sbjct: 792 VAMNSS------------------IQGTAADIIKIAMIRVSKRLQEEKLASRLILQIHDE 833 Query: 632 IVCETPDTDEFNASML--YHLMTSN 654 ++ ET + + + +M + Sbjct: 834 LLIETKEDEVEEVRKILKEEMMGAA 858 >gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] Length = 829 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 86/491 (17%), Positives = 152/491 (30%), Gaps = 129/491 (26%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + G +D + V + K+ +E+ G + + Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYA-GYEFNIGSPK 487 Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L + LF + L T+T VL S P + R + + L Sbjct: 488 QLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYRALT-KLQNTYVTGL 546 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ + DG R H Q T +++P Sbjct: 547 LKVVGEDG-------------------------------RIHSTFKQTETRTGRISSAEP 575 Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I + +R A +G LV AD + IE RVLA ++G++ KAF G D++ Sbjct: 576 NIQNIPVRTPLGREMRRFFTAKDGCLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T ++ FN VT D R+ K + + Y GA + K Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKD------------------ 677 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 IG + + + R S+ S + + + Q Sbjct: 678 -----------------------------IGVSVPKASEYIRSYLSKYSGIAHYMEQTVA 708 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + +G R R Y+ + Sbjct: 709 KAKRDGYVETMFGR---------------------------------RRYIKELAAKNKN 735 Query: 590 EYTYGGKLTEN-IVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDT-DE 641 +G ++ +N +Q + DI+ M+ ++L VHDE++ E + E Sbjct: 736 LQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKESGLDARLILQVHDELIVEAKEDCAE 795 Query: 642 FNASMLYHLMT 652 A +L M Sbjct: 796 KVALLLKEEME 806 >gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469] gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469] Length = 880 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 89/523 (17%), Positives = 160/523 (30%), Gaps = 130/523 (24%) Query: 149 NHREAWRLFGEYCKGDVTVTREI-------FKRLEPLSSKEQELWYLDQTINDRGYCVDV 201 E + Y + + LE E L Y + + G V+ Sbjct: 444 EQPEELAQYACYLAYTAKAAMPVILQKLRENQMLELFRDMEMPLVYTLYDMQEVGIRVNA 503 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + + V +L+QE+ G + ++L LF + L T++ Sbjct: 504 QELKAYGEELYVRIVELEQEIYRDA-GEEFNINSPKQLGVILFEKLKLPGAKKTKSGFST 562 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 +KL P V L++ ++ Sbjct: 563 AADVLEKLAPDYAIVAK----------------------------ILEYRQLAKLKSTYA 594 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKL 376 + R H +Q IT ++DP+ I + +R IA EG L Sbjct: 595 DGLAGF-IAADGRIHGTFNQTITATGRISSTDPNLQNIPVRTELGRLLRKVFIAKEGYVL 653 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RVLA M+G++ + AF D++ T ++ F++ +VT QR K + Sbjct: 654 IDADYSQIELRVLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEVTPLQRRNAKAVN 713 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y A ++ +++ + Sbjct: 714 FGIVYGISAF---GLSEDLHISVKEAGEYIDKYF-------------------------- 744 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDK 555 Q + +V + L A ++ E G A + +RR VP Sbjct: 745 ---------------QTYPKVKDF---LDNAVKEAKEKGYAETLFHRRRPVP-------- 778 Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM- 614 L SG + R +N+ + + DI+ M Sbjct: 779 -----ELKSGNFMQRSF--GERVAMNSPIQG------------------TAADIIKIAMI 813 Query: 615 -----MNATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLM 651 + A + ++L +HDE++ E P E +L M Sbjct: 814 RVNERLRAEQFQSRLILQIHDELLIEAEPSEVEAVKELLAQEM 856 >gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 887 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 89/511 (17%), Positives = 172/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ KL+ ++ G + ++L Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKKLEDKIYGQA-GEKFNLNSPKQLGH 547 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+T VL K +P ++ + R A + + L++ + Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQIAKIQSTY-VKGLLDVI 606 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H Q +T + DP+ Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+Q +AF+TG D++ T Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P +VT R K + + Y ++ G++ + Sbjct: 696 AMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E +P ++ + +++A ++ Sbjct: 750 -------------YFEQYP----------------------------QIKDYMNKAVQEA 768 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A I +RR +P ++ KK + R+ R+ +N+ Sbjct: 769 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 806 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K +V+ VHDE++ + P + Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETI 855 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|332687082|ref|YP_004456856.1| DNA polymerase I [Melissococcus plutonius ATCC 35311] gi|332371091|dbj|BAK22047.1| DNA polymerase I [Melissococcus plutonius ATCC 35311] Length = 887 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 97/633 (15%), Positives = 196/633 (30%), Gaps = 142/633 (22%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVG 113 Q + L + +++ T L I + L +N + ++ V Sbjct: 365 QAFIDWLFDETCQKQVYDAKRTYTALNRYVGKMQGISFDILLAAYLLNTNDTNTDIECVA 424 Query: 114 EALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 + + +E + R K + E Y+ + + +A E D+ V + Sbjct: 425 RQYGYTDIQSDE--AVYDRGAKKKVPQEKEIFYN-HLAHKIKAIEYLSEKLAADL-VEKN 480 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 + E L + + G VD + + ++Q++ + G Sbjct: 481 QANLFSEM---ELPLSRILADMEITGIHVDAHRLEEMQGEFSDQLKAIEQKIYTEA-GEE 536 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + GL + T+T VL K+ P + R A + Sbjct: 537 FNINSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKERAPIVEDILIYRQIAKIQS 596 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 + L++ + D ++ H Q +T Sbjct: 597 TY-VEGLLKVIQPDHKV-------------------------------HTRYLQTLTQTG 624 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + DP+ I +R I E + +D + IE RVLA ++ ++ A Sbjct: 625 RLSSVDPNLQNIPIRLEEGRKIRQAFIPREKDWLIYSSDYSQIELRVLAHISNDEHLKAA 684 Query: 402 FETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 F +D++ +T R FN++ P +VT + R K + + Y ++ ++ Sbjct: 685 FLEQQDIHASTAMRVFNLSSPEEVTPNMRRQAKAVNFGIVYGISDY---GLSKNLEISRQ 741 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + + K+ V Sbjct: 742 QAQQYI-----------------------------------------DTYFNKYPSVKTY 760 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 E+ + + + + +RR + + + + RS R+ + Sbjct: 761 MEEIVREAKD--KGYVETLYHRRRYLKDINSRNY---------NLRSFA------ERTAI 803 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVC 634 NT +Q + DIL M+ + ++L VHDE+V Sbjct: 804 NTP------------------IQGSAADILKIAMIQMDRRLKEENIQATMLLQVHDELVF 845 Query: 635 ETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 E P + E ++ +M S +PL A+ Sbjct: 846 EVPAAELEKLDKIVKEVMEKCVS--LTVPLIAD 876 >gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH] gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH] Length = 872 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 107/674 (15%), Positives = 213/674 (31%), Gaps = 169/674 (25%) Query: 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV 56 + D ET S E+ ++ F+F ++ + H +P+ Sbjct: 320 KIVAFDTETDS------------LENPNIVGFSFAYEKNKAYYVPINHFYLGVTDQIPEK 367 Query: 57 -LKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114 +A++ D ++ HN F+ +LK L+IP T++LA S + Sbjct: 368 TALKAIQKILDKKVIGHNLKFDFKMLKKY-GLEIPTPH-ADTMILAWILDPDSPVGLDSV 425 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A + + + KE+I + K + +Y D ++ ++++ Sbjct: 426 AKRYLDHQNIKFKEVIG-------------KRKNFSEVDIQEAAKYAAEDALISLKLYEI 472 Query: 175 LEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L+ + + E L I +G +D+ L + L QE+ Sbjct: 473 LKEKLWEEVKWDIENIEMPFINLLIDIESQGIKLDIEYMQKLQTETTEKLENLTQEIYRY 532 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMR 282 G + + ++L LF L ++ T+T ++VL+S K P ++ R Sbjct: 533 A-GSEFNIKSTKQLAHILFEVLKLPVKRKTKTGYSTDEKVLTSLKGTHPIIEKLLEYRKL 591 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + + ++ + + Q Sbjct: 592 DKLLSTYIIP-----------------------LQEYAKKDPN-------HKIYTNFLQT 621 Query: 343 ITHLPTSITSDPDPLQIISD---CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 T + +P+ I + +R +A K+ V D + IE R+LA + ++ + Sbjct: 622 GTATGRLSSKNPNLQNIPTSTDINIRDAFVAE--KEFVSLDYSQIELRLLAHFSKDEHLI 679 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF +D+++ T + F K+ R + K + L Y G+ Sbjct: 680 NAFLEDKDIHLETAVKIFG---ENRAKEYRPVAKSINFGLIY--------------GMGP 722 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + + ++ ++A+ F + P + T E K R Sbjct: 723 KKLSETINVST-----KEAKEFIEKYFASFPT-------VKTFLENTKIEAR-------- 762 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + + +T L R N R+ Sbjct: 763 -----EKGYVET------------------------------LLKRRRFFDFAAANARTL 787 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCETP 637 N RE I Q + DI+ + M+ + ++L +HDE++ E Sbjct: 788 AN-----FERE------AVNTIFQGSAADIIKKAMIEIKQRFPKAKMLLQIHDELIFEID 836 Query: 638 DTDEFNASMLYHLM 651 DE A +M Sbjct: 837 SRDE--AYEYKKIM 848 >gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 872 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 83/525 (15%), Positives = 179/525 (34%), Gaps = 72/525 (13%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88 + AF F + V D + LKE E H + V + ++ Sbjct: 328 EIKKIAFSFGNDTVY-IDGFQI----KDLKEIFEKEKFEFTTHEIK-DFLVKLSYKGIEC 381 Query: 89 PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148 +++ T ++A + + LK + E + F KG D+ K Sbjct: 382 K-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEV--FGKG------RDKKKL 432 Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRL----------EPLSSKEQELWYLDQTINDRGYC 198 L C V + ++ ++L L E L + +++ G+ Sbjct: 433 EEIGEDILADYICSRCVHL-FDLREKLMNFIEEMDMKRLLLEIEMPLVEVLKSMEVSGFT 491 Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258 +D + L+Q ++ ++ ++ G + ++L +LF + L + T+T Sbjct: 492 LDKEVLKELSQKINDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG 550 Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 ++L P N +V + +++ ++ Sbjct: 551 YSTDSEVLEQLVP-------------------YNNIVNDI---------IEYRQLTKLKS 582 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 F P +R H Q++T +++P+ I +R I + Sbjct: 583 TYINGFLPLMD-ENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAFIPRTK 641 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 +V AD + IE RVLA ++G++ +++F ED+++ T + F V +VT + R Sbjct: 642 DGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAA 701 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K + + Y ++ ++ + + + + E Sbjct: 702 KAVNFGIIYGISDY---GLSRDLKISRKEAKEYINN------YFERYKGVKEYIEKIVRF 752 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537 A E+ ++ T R ++ + +SR ++ + G A Sbjct: 753 AKENGYVITIMNR-RRYIPEINSRNFTQRSQAERLAMNAPIQGSA 796 >gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium glutamicum ATCC 13032] Length = 905 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 92/528 (17%), Positives = 160/528 (30%), Gaps = 138/528 (26%) Query: 164 DVTVTREIFKRLEPLSSKEQ--ELWY--------LDQTINDRGYCVDVALAHTLNQIVDV 213 DV E+ + L + Q EL++ + + G VDVA + Sbjct: 477 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 536 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 + + ++ L + ++L+ LF G+ T+T + + L + Sbjct: 537 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 596 Query: 274 IQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 F + + A R L L+ + DGR+ T Sbjct: 597 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTT----------------------- 633 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384 +Q + ++DP+ I +RS + EG L+ AD + I Sbjct: 634 --------FNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQI 685 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RV+A ++ + ++A+ GEDL+ ++ FNV VT + R K M L Y Sbjct: 686 EMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLS 745 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A + S Sbjct: 746 AFGLSQQLSI-----------------------------------------------PAG 758 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 K+ R + L + E+ + G RR LP Sbjct: 759 EAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRY---------------LPE 803 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621 T+ ++ RE L I Q + DI+ M+ ++ Sbjct: 804 L----------------TSDNRVARENAERAALNAPI-QGTAADIIKVAMIRVDRSLKEA 846 Query: 622 ---YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 ++L VHDE+V E + E +L M + +PL+ Sbjct: 847 AVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEV 892 >gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 886 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 86/565 (15%), Positives = 185/565 (32%), Gaps = 76/565 (13%) Query: 34 AFGFDDHPVELWDCVHDPVM--PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F + E W DP + ++ L N+ + N+ + L L I + Sbjct: 341 GFALGND--EQWLVSRDPELLKAPEVQNWLTNSKIKKDVFNAKAQIVGLNR---LGISLD 395 Query: 92 RWICTLVLARSN----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 L+LA + L + + +E E+ + K R Sbjct: 396 GIDFDLLLASYLLNTNDNSNDLGKLAHEHGYDDVQTDE--EVYGKGAK---------RTI 444 Query: 148 PNHREAWRLFGEYCKGDVTVTR-------EIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 P+ + + + R E ++L + E L ++ + G VD Sbjct: 445 PDDDQLFFQHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLAKMEITGVHVD 504 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + + T++++++ G + ++L LF + L + T+T Sbjct: 505 AQTLKNMGSKLTERLTEIEEQIYQEA-GEEFNINSTKQLGKILFEKLKLPVIKKTKTGYS 563 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 + +KL PQA V N LQ+ S+ Sbjct: 564 TAVDVLEKLAPQAPIVEN----------------------------ILQYRQISKLQSTY 595 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGK 374 + H Q +T + DP+ I +R + S EG Sbjct: 596 IKGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRQAFVPSHEGW 655 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGK 433 ++ +D + +E RVLA + G+ + F+ GED++ +T R F++ P ++ ++ R K Sbjct: 656 QIFSSDYSQVELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAK 715 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 + + Y +A ++ + ++ + +E+ +++ E ++ Sbjct: 716 AVNFGIVYGISDY---GLAQRIHVSRSQAHEFIQ--NYFKEFPKVKDYIHDTIEFARQNG 770 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMK 552 + ++ +S+ + + T G A K + + ++ Sbjct: 771 YVETITHR-----RRYLPDINSKSFSRRSFAERTAMNTPIQGSAADIIKIAMIKMQDELE 825 Query: 553 KDKNNLILMLPSGRSLVYRDVGNNR 577 K + ++L LV+ Sbjct: 826 KRQLKAKMLLQIHDELVFEAPKEEI 850 >gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521] gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521] gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] Length = 956 Score = 223 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 83/512 (16%), Positives = 157/512 (30%), Gaps = 132/512 (25%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + +E +L E L ++ ++ G+ ++ ++ L D E + +E+ L Sbjct: 546 IEKEKMDKL--YYEVEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYELA 603 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L LF + L + T+T Q VL ++ R Sbjct: 604 D-EEFNVSSPKQLGKILFEKLDLPIIKKTKTGYSTNQEVLEKLLDKHEIIPKIMYYRQIT 662 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 S+ + L ++ DGR+ H +Q + Sbjct: 663 KISSTY-VEGLKNVIDEDGRI-------------------------------HSNFNQTV 690 Query: 344 THLPTSITSDPDPLQI-----ISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397 T ++DP+ I + +R I EG LV D + IE RVLA +AG++ Sbjct: 691 TTTGRLSSTDPNLQNIPIRHELGREIRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDEN 750 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 + AF+ D++ T + F V VT R+ K + + Y A + + Sbjct: 751 MIDAFKHHSDIHTKTASEVFKVPVEDVTSLMRSRAKAVNFGIVYGISAFSLSQDLKI--- 807 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 +A+ + E +P Sbjct: 808 ----------------PKAEAQEYMNIYFERYP--------------------------- 824 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 ++ + L + E G + L R Sbjct: 825 -KIKSYLENIVSEAEEKGYVLTI---------------------------LNRRRFIPEI 856 Query: 578 SYLNTTTRQL-TREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630 + N + L R +Q + DI+ M+N +K ++L VHD Sbjct: 857 NASNKIVKALGERLAMNAP------IQGSAADIIKIAMINVYNKLKESKMQSKLILQVHD 910 Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661 E++ + + + M + + GL Sbjct: 911 ELILNVKENEFEEVKKIVVDEMENAIKLSVGL 942 >gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] Length = 857 Score = 223 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 96/555 (17%), Positives = 180/555 (32%), Gaps = 81/555 (14%) Query: 23 KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82 Y E+ + AF V L + + +++ HNS L A Sbjct: 330 AYGEEGEITQCAF-LKSDTVHLV--TEGAE--KAVMGLCSLEGMSLCVHNSK----PLFA 380 Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142 + R +LA P+A S ++ +E +E Sbjct: 381 WLDRMGGEARVSYDAMLAAYLLNPNA----------SDYSLKRLQEEAGTAAPKLENETA 430 Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 + + W+ G ++L L E L + + + G+ VD Sbjct: 431 WQAAVLPRVKNWQAASLLANG--------QRKL--LEEMEIPLAQVLARMENIGFLVDGE 480 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC--- 259 + ++ E L +++ G + ++L LF++ GL T+T Sbjct: 481 SIRVYGERLETEIEALQKQIYE-EVGYEFNINSPKQLGDALFVKLGLPSGKKTKTGYSTN 539 Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 +L + P V + R + +++ + DGR+ Sbjct: 540 AEILEKLRYDHPAVELVLHYRTLTKLKSTY-CEGMLKVIGPDGRI--------------- 583 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGK 374 H +Q T +++P+ I + +R +A EG Sbjct: 584 ----------------HSNFNQTETRTGRISSTEPNLQNIPVRTELGRELRKFFLAKEGW 627 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 LV AD + IE RVLA +A ++ +KAF+ ED++ T ++ F + P VT R+ K Sbjct: 628 VLVDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQVFGMPPEMVTPLMRSRAKA 687 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y GA + ++ + ++ + + E A Sbjct: 688 VNFGIVYGIGAFSLS---KDINVSRKEAQRYID------DYLTLYSGVDRYMKEVVEKAK 738 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 ED ++ T R ++ + + L + G A K V + K Sbjct: 739 EDGYVETLFHR-RRYLPELTASNFNLRAFGERVARNMPIQGTAADIIKIAMVRVDRRLKR 797 Query: 555 KNN-LILMLPSGRSL 568 +N L+L L Sbjct: 798 ENMRARLILQVHDEL 812 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%) Query: 577 RSYLNTTTRQLTREYTYGGKLTENI-VQAVSRDILAEGMMNATKAG------YDIVLTVH 629 R YL T +G ++ N+ +Q + DI+ M+ + ++L VH Sbjct: 750 RRYLPELTASNFNLRAFGERVARNMPIQGTAADIIKIAMVRVDRRLKRENMRARLILQVH 809 Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667 DE++ E P+ + A+ +L M S +P+ AE Sbjct: 810 DELIVEAPEDEAEQAARILTEEMEGAVS--LTVPMVAEA 846 >gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] Length = 925 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 91/536 (16%), Positives = 173/536 (32%), Gaps = 134/536 (25%) Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAH 205 W ++ + + + E+ K+L+ + E L + + G V+ Sbjct: 489 PEWAKLADHAEAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMT 548 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265 L + K +E +L + ++L+ LF + L T+T + Sbjct: 549 ALRDSTAEKLAKEVEEARALVDMPKLNLGSPKQLQEVLFDKLELSKTKKTKTGYSTAAKA 608 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTL---VEAMNSDGRLRGTLQFLGASRTGRWSGC 322 ++L + F + + A R +++TL ++A+ SDGR+ T Sbjct: 609 IERLAEKHPHPFLDHLLAHREYQKRVSTLDGLIKAIASDGRIHTT--------------- 653 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-L 376 +Q T ++DP+ I +R+ + EG + L Sbjct: 654 ----------------FNQTATATGRLSSTDPNLQNIPVRTEEGRQIRAAFVPGEGYEAL 697 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RV+A + ++ ++A+ +GEDL+ ++ F+V +VT + R K + Sbjct: 698 LTADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHNFVGSQVFDVPVNEVTPELRRRVKALS 757 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y S GL+ Sbjct: 758 YGLVYGL---------SEYGLSQQ------------------------------------ 772 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + KK + R + L++ ++ ++ RR Sbjct: 773 --LDISVREAKKIMVKYFERFGGVRRYLNEVVDRARKDEYTSTMLGRRRY---------- 820 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 S L + RQ RE L I Q + DI+ M+ Sbjct: 821 --------------------LSDLASLNRQ-ARENAERAALNAPI-QGTAADIIKVAMIR 858 Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 K ++L VHDE+ E + + + M A +PL+ Sbjct: 859 VDAALKKEKLASRVLLQVHDELDVEVANGELEQVRGIIQREMDEAIELA--VPLEV 912 >gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] Length = 857 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 99/660 (15%), Positives = 187/660 (28%), Gaps = 168/660 (25%) Query: 28 VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87 + A D V L P +P L+ + + + L Sbjct: 334 PQIRDMAVAVDGQVVHL----SAPHIPAYLERLPQAAQIITA------DGKRLYKVLRTG 383 Query: 88 IPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143 + +VL P AL + ++ E Sbjct: 384 KRPAPFPADVVLGAYLLDPTRTSYALSYLATRFEVPL---------------PEGAAPSV 428 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203 + W E ++++R+ E L Y + G+ VD A Sbjct: 429 CAEALFAAQVWE--KEEAALQQFGLTDLYERI------EAPLLYTLSVMETNGFTVDTAR 480 Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---Q 260 + + + L+ E+ G + ++L LF L + T+T Sbjct: 481 LQAMKTALTAQAAALENEIYE-AAGAAFNINSPKQLGHMLFEVLHLPVRKKTKTGYSTDA 539 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 VL S + P ++ F + Sbjct: 540 EVLESLRDAHPAVEKIVR-------------------------------FRALKKLISTY 568 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK 375 P +P R + Q +T +SDP+ I +RS + +G Sbjct: 569 LDGLEPLIVPATGRVYTSFHQTVTATGRLSSSDPNLQNIPIRTEQGKKIRSLFVPGKGYD 628 Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 ++ D + IE R+LA ++ + + F+ +D++ T + F++ QVT ++R+ K Sbjct: 629 YILSGDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWEQVTPEERSHAKA 688 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y +A G++ Sbjct: 689 VNFGIIYGISDF---GLARNIGISRAQA-------------------------------- 713 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKK 553 K+ +R S + + + Q E G + + R + + K Sbjct: 714 ------------KQYIESYFARYSTIHGYMEELVRQAKETGITRTMFGRMRTLTDINSKN 761 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 RSL R +NT +Q + DI+ Sbjct: 762 FTR---------RSLA------ERMAMNTP------------------IQGSAADIIKLA 788 Query: 614 MMNATKAGY------DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 M + +++ VHDE+V E P + E ++L M + +PL A+ Sbjct: 789 MNAVQRELEQRQLRSRLLVQVHDELVLEVPADELELVKTLLKRTMEEAVT--LSVPLIAD 846 >gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] Length = 845 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 96/533 (18%), Positives = 167/533 (31%), Gaps = 130/533 (24%) Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209 HRE + V + L + E L + + G +D+A + Sbjct: 415 HRENRAVAALKIGQMVEKRLDAAGLLGLMQELEMPLVPVLCRMESAGIGIDLAAFDNFLR 474 Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265 V L + SL G + R ++ LF E GL T T VL S Sbjct: 475 QVKKSLDDLTASIYSLA-GKEFNIRSTQQTAQVLFDELGLKARRKTPKGAYSTSNVVLES 533 Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325 ++ + R + L L ++ G Sbjct: 534 MRRDHDIVDLILQYRTLEKLRSTY-LEPLPRKVDVGG----------------------- 569 Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVAD 380 R H +Q+ T +S+P+ I +R+C S+GK LV AD Sbjct: 570 --------RLHTTFNQLATATGRLSSSNPNLQNIPIKGEFGPRMRACFKPSKGKLLVAAD 621 Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440 + IE R+LA M+ + L+AF ED++ T F+ +V++D+R K + L Sbjct: 622 YSQIELRILAHMSMDPNLLQAFGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTINFGLL 681 Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500 Y G QK++ +++ Sbjct: 682 YGMGP---QKLSRELSISMEEAKE------------------------------------ 702 Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560 + K RV + + ++ + ++ + +A +RR +P + + Sbjct: 703 -----FISVYFSKLDRVRDFYQQIEEKAQE--QGYVTTMAGRRRLLPDINSR-------- 747 Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619 NT Q R ++Q + D++ + M+ Sbjct: 748 --------------------NTNMAQQARR-----TAVNTVIQGSAADVIKKAMLAVDSD 782 Query: 620 -----AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 G +VL VHDE++ E + L +M S +PL E Sbjct: 783 SELRSLGSVMVLQVHDELLLEVDAPVAQKAGERLARVMAGVES--LEVPLLVE 833 >gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] Length = 879 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 169/561 (30%), Gaps = 66/561 (11%) Query: 17 TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76 + GI Y E+ + A + V L+ C + Q + + + + E Sbjct: 319 KEAGISIYKENDA-MWVALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 377 Query: 77 RTVLKACFNLDIPIHRWICTLVLARS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135 + + + A N L S + A S + KELI + Sbjct: 378 VKEHLSHLTIHETTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSRKELIDKKHP 437 Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLD 189 T L D K G + + +L L E + Sbjct: 438 MVTDGVLSDAGKKIM-------GYEAYISREAIQPLSDKLTELEMMDLYREIEIPTMFAL 490 Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249 + RG VD + +L + + G + ++L LF L Sbjct: 491 HDMEVRGIHVDSKALKEYGDQLVGRIEELQESIYKEA-GEEFNINSPKQLGVVLFEHMKL 549 Query: 250 HLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306 T+T VL + L P V R + + L + D R+ Sbjct: 550 EGAKKTKTGYSTSVEVLEKIEHLYPIISMVLEYRQLTKLKSTYA-DGLANFIQDDQRI-- 606 Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----IS 361 H + +Q IT +++P+ I + Sbjct: 607 -----------------------------HGKFNQTITATGRISSTEPNLQNIPIRMELG 637 Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + +G + AD + IE RVLA ++ ++ + A+E +D++ T + F + Sbjct: 638 RAIRKVFLPEDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPM 697 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT QR K + + Y A + ++ + + + F Sbjct: 698 DEVTSTQRRDAKAVNFGIIYGLSAFGLSQ---DLKISRKQAQEYID--RYFAMYPRVKEF 752 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 + E D ++ T R++ K S + N + + G A Sbjct: 753 L----DGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQ-RNFGERVAMNSPIQGTAADII 807 Query: 542 KRRDVPLVYMKKDKNNLILML 562 K V + K+K +L Sbjct: 808 KIAMVRVNMKLKEKQMKSRLL 828 >gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 887 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 90/511 (17%), Positives = 172/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ +L+ ++ S G + ++L Sbjct: 489 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQA-GEKFNLNSPKQLGH 547 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+T VL K +P ++ + R A + + L++ + Sbjct: 548 ILFEKLGLPVIKKTKTGYSTSVEVLDQLKMQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 606 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H Q +T + DP+ Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+Q +AF+TG D++ T Sbjct: 636 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 695 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P QVT R K + + Y ++ G++ + Sbjct: 696 AMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 749 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E +P ++ + + +A ++ Sbjct: 750 -------------YFEQYP----------------------------QIKDYMDKAVQEA 768 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A I +RR +P ++ KK + R+ R+ +N+ Sbjct: 769 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 806 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K +V+ VHDE++ + P + Sbjct: 807 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 855 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 856 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] Length = 886 Score = 223 bits (568), Expect = 9e-56, Method: Composition-based stats. Identities = 110/647 (17%), Positives = 208/647 (32%), Gaps = 160/647 (24%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE 114 LK+ LEN + + L LD+ + ++LA ++ Sbjct: 367 LKDILENRKIQKDVFDLKRMTVGLHR---LDVIVEGLNYDMLLASYLVNNEKNSNDLGEI 423 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 A ++ E+ + K E F + + + Sbjct: 424 AHLYDEYSIKTDLEVYGKGKKQAI------------PEDKEFFKHLAAKVCVIEKLKPEL 471 Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L+ L EQ+ + + + G V+ + L V+ +L+ ++ Sbjct: 472 LKQLKEHEQDDLFETIEIPTARVLAKMEINGIKVEASTLIELQNEFAVKLKELEDKIYKQ 531 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMR 282 G + ++L LF + L + T+T VL K +P ++ + R Sbjct: 532 A-GEEFNLNSPKQLGHILFEKLNLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQI 590 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + ++G L + R R H Q Sbjct: 591 AKIQSTY--------------VKGLLD------------------VIQRDGRVHTRYLQT 618 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQ 396 +T + DP+ I +R + SE + D + +E RVLA ++G+Q Sbjct: 619 LTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQ 678 Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 +AF+TG D++ T R F++ P +VT R K + + Y ++ Sbjct: 679 NMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNL 735 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ A+ F E +P Sbjct: 736 GISRK----------------RAKEFIDNYFEQYP------------------------- 754 Query: 516 RVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 ++ + + +A ++ E G A I +RR +P ++ KK + RS Sbjct: 755 ---QIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKF---------TVRSFA----- 797 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTV 628 R+ +N+ +Q + DI+ M+N K +V+ V Sbjct: 798 -ERTAINSP------------------IQGSAADIIKIAMINMQKKLDELHLKTKMVIQV 838 Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 HDE++ + P + + +M S +PL A+ G+ Y Sbjct: 839 HDELIFDVPKDELETIKKIVPEIMQSAVK--LDVPLIADSGWGHNWY 883 >gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] Length = 879 Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 102/661 (15%), Positives = 205/661 (31%), Gaps = 160/661 (24%) Query: 8 FETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMPQVLKEALEN 63 E+ S I D G+ A + ++ F+F ++ + V Q+ +A + Sbjct: 313 LESESIIAFDTETTGLN--AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQAAKR 370 Query: 64 T-----DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118 I+ HN ++ +++ F L P ++ T++LA + AL+L Sbjct: 371 ALGQIYSHFIIGHNLKYDFAIIENNFKL-TPPKKYADTMILAWLYNPSLRVNMDDLALRL 429 Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KR 174 K + ++ + + Y D +T + K Sbjct: 430 FDYKTLHFESVVK-------------KGENFASVELEKACNYAAEDAYITLRFYLYFLKN 476 Query: 175 LEPLS-----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 LEP E + + + G ++ L Q + E L +E+ +L Sbjct: 477 LEPNLLKLGFESEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYTLCDD- 535 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286 + +++ LF + L T+T ++VL S P ++ R ++ Sbjct: 536 KFNLNSPKQVGDVLFEKLKLPSAKKTKTGYSTDEKVLESLIDKHPVVSKILAYR-ELAKL 594 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 L++ D SR + Q T Sbjct: 595 YSTYCEPLLKLALKD-----------------------------ENSRIYSSFLQTGTAT 625 Query: 347 PTSITSDPDPLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I + +SC IA +G + D + IE R+LA + ++ L+A Sbjct: 626 GRLSSKEPNLQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEA 685 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ ED++ T F + + R++ K + L G+ T Sbjct: 686 FKNDEDIHARTAIMIFG----ENNYETRSVAKSINFGLI--------------YGMGYKT 727 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + +K ++ K + + + + Sbjct: 728 LSQNLKIEASL---------------------------------AKTYIEKYFANFTSIK 754 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + NG + SGR + Y + Sbjct: 755 SFFEKVKNDAKING-----------------------FISTLSGR----------KRYFD 781 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCETPD 638 + + Y + +I+Q + DI+ M+ K A ++L +HDE++ E D Sbjct: 782 FANAKPMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEVKD 841 Query: 639 T 639 Sbjct: 842 E 842 >gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555] gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016] gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555] gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 880 Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 150/485 (30%), Gaps = 127/485 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 EQ L ++ ++ G+ VD + + +E K+ +E+ L+ + ++L Sbjct: 481 EVEQPLTFVLASMECEGFKVDKDKLTEMEEKFKIEIDKVQKEIYFLS-EEEFNINSPKQL 539 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL P ++ R + + L Sbjct: 540 GKILFEKLDLPVIKKTKTGYSTNADVLERLHGKHPVIEKIIYYRQLT-KLYSTYIEGLKG 598 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DG++ +Q +T +++P+ Sbjct: 599 VIEEDGKIHS-------------------------------NFNQTVTTTGRLSSTEPNL 627 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I ++ AD + IE RVLA ++G++ + AF D++ Sbjct: 628 QNIPIKYEMGKEIRKIFIPDNRDCVILSADYSQIELRVLAHISGDENLINAFINHNDIHT 687 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + FNV +VT QR+ K + + Y G + A + + Sbjct: 688 KTASEVFNVPLGEVTSTQRSNAKAVNFGIVYGIGDFSL---ARNLNIPRKEAKSYIDA-- 742 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + + + + A ++ ++ T Sbjct: 743 ----YFEKYPKVKLYMNDIVKQAEKNFYVTTILN-------------------------- 772 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 +RR +P + K N +I L R +NT Sbjct: 773 -----------RRRFIPEI---KSSNKIIKAL------------GERFAMNTP------- 799 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N I+L VHDE+V + + Sbjct: 800 -----------IQGSAADIIKIAMVNVFNRLKDNNFKSKIILQVHDELVLNVYKDELKDV 848 Query: 645 SMLYH 649 + Sbjct: 849 KDIVK 853 >gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] Length = 931 Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 104/648 (16%), Positives = 195/648 (30%), Gaps = 161/648 (24%) Query: 45 WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 D + +K LE++ + N+ LK L I + L+L Sbjct: 402 IDLLTQNSP---VKRILEDSTILKNVFNAKELYVSLKR---LGIALKGVSFDLLLVSYLL 455 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 + AL + + E K A F E+ Sbjct: 456 DTNDNNNDLGALAHDND----------YYAVMTDEEVYGKGAKFAIPAADADFFEHLGR- 504 Query: 165 VTVTREIFKRLEPLSSK-------------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211 I EPL + E L + + G VD + + Sbjct: 505 --KAMAINLLREPLLDRLLSHEQTKLYEDIELPLTKILADMESTGITVDSEQLLQMRSKL 562 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--L 269 ++L+Q++ G + + ++L LF E T+T + +K Sbjct: 563 TERLSELEQKIYQQA-GHEFNIQSPKQLGVVLFEEMKYTPIKKTKTGYSTSVEVLEKMGD 621 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 P + R A + + + + G+ Sbjct: 622 VPIVESILAYRQVAKIQST--YVEGLLRV-----IHGS---------------------- 652 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAG 383 S+ H Q +T + DP+ I +R + S +++ AD + Sbjct: 653 --DSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRIEEGRQIRKAFVPSHSDWQILSADYSQ 710 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQ 442 IE RVLA + G++ AF GED++ T R F + + V + R K + + Y Sbjct: 711 IELRVLAHITGDKNLQAAFINGEDIHAATARRIFGIKDDEPVEGNVRRQAKAVNFGIVYG 770 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 ++ G++ +++T +++ D + + + + A E ++ T Sbjct: 771 ISDF---GLSKNIGVSRKEAKAIIET--YFDQYPDVKKWSDDIIAS----ARETGYVET- 820 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 IA +RR +P + K+ Sbjct: 821 ------------------------------------IAHRRRYLPDIKAKRFNA------ 838 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620 RS R+ +N+ +Q + DI+ M+ A Sbjct: 839 ---RSFA------ERTAMNSP------------------IQGSAADIIKIAMIKVQAAIE 871 Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 ++L VHDE++ E P ++ + L +M S +PL Sbjct: 872 QAGMQAHMLLQVHDELIFEAPASEMADLEKLVTKVMDSAVK--LDVPL 917 >gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] Length = 911 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 111/643 (17%), Positives = 208/643 (32%), Gaps = 152/643 (23%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSA 108 ++ + L D+ N+ E VL L I ++ L + + Sbjct: 385 ELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 443 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-------RNKPNHREAWRLFGEYC 161 L + + + E +F E +E L+ H + + ++ Sbjct: 444 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDH- 502 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + R+I E L + ++ G +D A L Q D +L+++ Sbjct: 503 -QQAELYRQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQ 551 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFN 278 + G + ++L LF+ + T+T VL + P + Sbjct: 552 IYEEA-GQEFNINSPKQLADLLFVHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQ 610 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + + L+E + P S+ H Sbjct: 611 YRQLA-KLNSTYVKGLLEVV------------------------------NPDDSKIHTR 639 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392 Q +T + DP+ I +R + S EG ++ +D + IE RVLA + Sbjct: 640 YLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHV 699 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKM 451 G++ KAFE+GED++ T F ++ Q +T DQR K + + Y + Sbjct: 700 TGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDF---GL 756 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A G++ +++T + + W+ ++ A + ++ T Sbjct: 757 AQRLGISRIEGKEIIQT-----YFHEFPKVKNWI-DSIIALAHKQGYVET---------- 800 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 IA++RR +P ++ K + RS Sbjct: 801 ---------------------------IAQRRRYLPDIHSKNF---------NLRSFA-- 822 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625 R+ NT +Q + DI+ M+ +A ++ Sbjct: 823 ----ERTATNTP------------------IQGSAADIIKIAMIKMQQALDDNHLKAKML 860 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 L VHDE++ E P + L +M S +PL+ E Sbjct: 861 LQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEA 901 >gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 627 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 74/399 (18%), Positives = 146/399 (36%), Gaps = 45/399 (11%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E L + + +G +D+ + +D E ++++ + G + + Sbjct: 225 LMENEMPLIQVLSLMERKGIEIDIQYFKNYSLELDKELLRIEKAIYEEA-GEEFNINSPK 283 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF++ L T+T + + L + Sbjct: 284 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 322 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 R L + ++ P SR H +QI T +SDP+ Sbjct: 323 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 375 Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R +A GK L+ D + +E RVL M+ ++ ++A+ +DL+ T Sbjct: 376 NIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLT 435 Query: 413 YARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 R FN+ V+++QR I K++ ++ Y +A + + + +K Sbjct: 436 ARRIFNLSDTETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 490 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E++ +F R + E EH G K+ S+ + ++ + T Sbjct: 491 FEQYPKVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 545 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + G A K+ V + + KDK ++ L+L L++ Sbjct: 546 VIQGTAAEVLKKVMVKVYDVLKDKEDITLLLQVHDELIF 584 >gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100] gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100] Length = 879 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 103/669 (15%), Positives = 211/669 (31%), Gaps = 165/669 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQVLKEALENT-----DVT 67 D G+ ++ ++ F+F + HD V Q+ +A + T Sbjct: 322 DTETTGLD--TKEAKIVGFSFCSHESEAFYVPLAHDYLGVCKQISMQAAKKGIEKIYQST 379 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 ++ HN ++ ++K FNL +P + T++LA + A ++ + + Sbjct: 380 VIGHNLKYDFEIIKNNFNL-LPPKNYADTMILAWLKEPSLRVNMDVLAKRIFDYETLHFE 438 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---------KRLEPL 178 +L+ KGE+ + +Y D +T + LE Sbjct: 439 DLVK---KGESFAGV----------DVEKACKYAAEDAYITLRFYLYFLKNLEKSLLELA 485 Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E E + + + G +D+ +L Q + + L +++ L G + ++ Sbjct: 486 QKSEFEFIKVLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYDLA-GEKFNINSPKQ 544 Query: 239 LKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 + LF + L ++T ++VL++ ++ R ++ L+ Sbjct: 545 VGDILFEKLKLPSGKKSKTGYSTDEKVLNNLIDEHLIIKEILAYR-ELAKLVGTYCEPLL 603 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + D SR + Q T + DP+ Sbjct: 604 KLAKKD-----------------------------ENSRIYSSFLQTGTATGRLSSKDPN 634 Query: 356 PLQIIS-----DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I + ++C +A EG + D + IE R+LA + ++ L+AF ED++ Sbjct: 635 LQNIPAHGQYAKDYKTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDEDIHA 694 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F + R+I K + L Y G ++ ++ + Sbjct: 695 KTAIMIFG----ESNYHTRSIAKSINFGLIYGMG---YKTLSQNLKIEAKLA-------- 739 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 K+ + + + + + Sbjct: 740 ------------------------------------KEYIEKYFKNFTSIKTYFEKVKNE 763 Query: 531 TIENG--KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 +NG K ++ RKR Y + + Sbjct: 764 AKQNGFIKTLLGRKR-----------------------------------YFDFENAKPM 788 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCETPDT--DEFN 643 + Y + + +Q + DI+ M+ K ++L +HDE++ E D DEF Sbjct: 789 QIAMYERESINSTLQGSAADIIKLAMIKIAKDLDENKRLILQIHDELIFEVKDEFCDEF- 847 Query: 644 ASMLYHLMT 652 A +M Sbjct: 848 AKNASDIME 856 >gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R] gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R] Length = 880 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 92/528 (17%), Positives = 160/528 (30%), Gaps = 138/528 (26%) Query: 164 DVTVTREIFKRLEPLSSKEQ--ELWY--------LDQTINDRGYCVDVALAHTLNQIVDV 213 DV E+ + L + Q EL++ + + G VDVA + Sbjct: 452 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 511 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 + + ++ L + ++L+ LF G+ T+T + + L + Sbjct: 512 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 571 Query: 274 IQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 F + + A R L L+ + DGR+ T Sbjct: 572 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTT----------------------- 608 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384 +Q + ++DP+ I +RS + EG L+ AD + I Sbjct: 609 --------FNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQI 660 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RV+A ++ + ++A+ GEDL+ ++ FNV VT + R K M L Y Sbjct: 661 EMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLS 720 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A + S Sbjct: 721 AFGLSQQLSI-----------------------------------------------PAG 733 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 K+ R + L + E+ + G RR LP Sbjct: 734 EAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRY---------------LPE 778 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621 T+ ++ RE L I Q + DI+ M+ ++ Sbjct: 779 L----------------TSDNRVARENAERAALNAPI-QGTAADIIKVAMIRVDRSLKEA 821 Query: 622 ---YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 ++L VHDE+V E + E +L M + +PL+ Sbjct: 822 AVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEV 867 >gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 694 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 111/635 (17%), Positives = 178/635 (28%), Gaps = 157/635 (24%) Query: 54 PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 P L EA L + + V HN+ ++ D + LA Sbjct: 165 PSELDEADERAWVAWLADAERPKVLHNAK---GAMRVFAEHDWSVAGVSMDTALAAYLVK 221 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGD 164 P +AL L + L + + EA L D Sbjct: 222 PGRRSFDLDALSL--------EYLGRELAPPAAADGQLAFGADDGAEAEALMVQARAVLD 273 Query: 165 V-------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L E L + G D A + Q+ + Sbjct: 274 LGSAFEGRLAEVGAADLLR---DMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQ 330 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAI 274 +E G + ++L+ LF E GL T+T L+ T + Sbjct: 331 AVKEAHG-AAGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLATQTDNEL 389 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 V R R + + L++ + +DGR+ T Sbjct: 390 PVIMLRHREQAKLRVTVEGLIKTIAADGRIHTT--------------------------- 422 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARV 388 +Q + ++DP+ I +R + EG + L+ AD + IE RV Sbjct: 423 ----FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRV 478 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ + ++AF +GEDL+ T ++ F V P V + R K M L Y A Sbjct: 479 MAHLSEDAGLIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGLAYGLSAFGL 538 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + + L Sbjct: 539 SQ---QLNIEAGEARAL------------------------------------------- 552 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 R + + L +A ++ G RR LP Sbjct: 553 -MDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRY---------------LP----- 591 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622 LN+ RQ RE L I Q + DI+ M+ A Sbjct: 592 ----------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKIAMLKVDGALRDAGLAS 639 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPS 656 ++L VHDEIV E + A + M+ Sbjct: 640 RMLLQVHDEIVLEVAPGERGVAEEIVRREMSDAVD 674 >gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032] Length = 880 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 92/528 (17%), Positives = 160/528 (30%), Gaps = 138/528 (26%) Query: 164 DVTVTREIFKRLEPLSSKEQ--ELWY--------LDQTINDRGYCVDVALAHTLNQIVDV 213 DV E+ + L + Q EL++ + + G VDVA + Sbjct: 452 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 511 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273 + + ++ L + ++L+ LF G+ T+T + + L + Sbjct: 512 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 571 Query: 274 IQVFNNRMRASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 F + + A R L L+ + DGR+ T Sbjct: 572 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTT----------------------- 608 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGI 384 +Q + ++DP+ I +RS + EG L+ AD + I Sbjct: 609 --------FNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQI 660 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E RV+A ++ + ++A+ GEDL+ ++ FNV VT + R K M L Y Sbjct: 661 EMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLS 720 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A + S Sbjct: 721 AFGLSQQLSI-----------------------------------------------PAG 733 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 K+ R + L + E+ + G RR LP Sbjct: 734 EAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRY---------------LPE 778 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621 T+ ++ RE L I Q + DI+ M+ ++ Sbjct: 779 L----------------TSDNRVARENAERAALNAPI-QGTAADIIKVAMIRVDRSLKEA 821 Query: 622 ---YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKA 665 ++L VHDE+V E + E +L M + +PL+ Sbjct: 822 AVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEV 867 >gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] Length = 866 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G+ V+ + L+ E + +E+ L + ++L Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL K P ++ R S+ + L Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T +Q +T +++P+ Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I EG L+ AD + IE RVLA ++G++ + AF D++ Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT R+ K + + Y G F ++ ++ Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +A+ + E +P ++ + + + Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589 G + RR +P + R +N Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+N ++L VHDE++ + + Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 +L M + +PL + Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855 >gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829] gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] Length = 1030 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 92/530 (17%), Positives = 166/530 (31%), Gaps = 131/530 (24%) Query: 159 EYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLN 208 EY R ++ L L E L + + G D L + Sbjct: 599 EYALE-AIAVRALYPVLRELLHTDGSDDLFYELELPLIPVLLHMERNGIYCDKHLLAEQS 657 Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 + + E + EL L + +L LF GL + L +T Sbjct: 658 RALSHELNAMSLELRRLAQ-QDFNIDSPMQLSHVLFDVWGLPTKGLKKT----------- 705 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 R + L +L A D R++ L + + + Sbjct: 706 -----------RRGYYSTNAQTLASLSMA---DERVQLILDYRERMKIKNTYLDAL-VHD 750 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAG 383 + R H +Q I +SDP+ I + VR + + D + Sbjct: 751 IRSDGRIHSTFNQTIAATGRLSSSDPNLQNIPTRSSLGHRVRKAFVLPRNHLFLACDYSQ 810 Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443 IE R+LA ++ ++ + AF+TG D + T AR F+V+P +VT R+ K + + Y Sbjct: 811 IELRLLAHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNFGIVYGQ 870 Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503 A +A++ ++ ++ + +A R + + A E ++ Sbjct: 871 QAF---GLATSLKISRKEAQEMID------RYFEAYPGVRKFLDESVQFAREHSYV---- 917 Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563 + ++R + + D N L Sbjct: 918 ---------------------------------PTMYGRKRHIAQI----DSRNFQL--- 937 Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619 RS R+ +N Q + DI+ M+ K Sbjct: 938 --RSFA------ERTAMNHPM------------------QGSAADIIKLAMIEVEKQFAQ 971 Query: 620 --AGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L +HDE+ E P+ E +S++ M + +PL AE Sbjct: 972 LGLASKLILQIHDELDFEVVPEELERVSSVVKRAMEGVVT--LRVPLIAE 1019 >gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 886 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 104/664 (15%), Positives = 200/664 (30%), Gaps = 159/664 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 FA D P LKE LE++ V + RT + L I Sbjct: 343 FALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQKNVFDLK--RT-TYGLYRLGIKAEG 397 Query: 93 WICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150 L+LA ++ ++ E+ + +N Sbjct: 398 LSFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDLEVYGKG-----------KNAKIP 446 Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDV 201 + F + L+ L EQ+ Y + + G V Sbjct: 447 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQP 506 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ- 260 + L V +L++++ G + ++L LF + GL + T+T Sbjct: 507 SRLKELENDFAVRLKELEEKIYKEA-GEEFNLNSPKQLGVILFEKLGLPVIKKTKTGYST 565 Query: 261 --RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL+ K+ +P + R S+ + L++ ++ Sbjct: 566 SVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDE------------------ 606 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 R R H Q +T + DP+ I +R + S Sbjct: 607 ------------RDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSP 654 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431 + D + IE RVLA ++ + +AF+TG D++ T + F+++ +VT QR Sbjct: 655 DGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRR 714 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y ++ ++ + +++ + + Sbjct: 715 AKAVNFGIVYGISDY---GLSKNLDISRKQAKEFID--EYFDQYPGIQAY---------- 759 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVY 550 + A + E G A I +RR +P ++ Sbjct: 760 --------------------------------MDWAVKDAREKGYAETIMHRRRYLPDIH 787 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 K + RS R+ +N+ +Q + DI+ Sbjct: 788 AKNF---------NVRSFA------ERTAINSP------------------IQGSAADIM 814 Query: 611 AEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663 M+N K +V+ VHDE++ + P + + +M + +PL Sbjct: 815 KIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVPL 872 Query: 664 KAEG 667 A+ Sbjct: 873 VADA 876 >gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] Length = 602 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 110/557 (19%), Positives = 195/557 (35%), Gaps = 78/557 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74 D G+ Y++ FG + + V + AL D V HN+ Sbjct: 41 DSETTGLDIYSKGFRCRTVQFGSPEEGW-VIPVERGAVFREAAIAALRAAD-RFVLHNAS 98 Query: 75 FERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLSS--------QKME 124 ++ V C + + + + T +LA P K G L + Sbjct: 99 YDLQVFDKCLGVPMEELWPKVVDTKILAHLVD-PRGRKEGGTGHSLEELTRHYLDADVAD 157 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--- 181 K L+ K E K + + Y D + + ++L PL Sbjct: 158 TVKTLMTDLAKEEKTTKANVWKKVSLDNP--RYQLYAGMDPILACRLRQKLSPLVPVSAR 215 Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E++L + + G+ +DV L+ + ++ + + L+YG + Sbjct: 216 GLVGYERDLAEVCSVMERTGFLLDVDYTRKLSTRLRLDESVASEIA--LSYGCE-NVNST 272 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN----NRMRASRSAVLKLN 292 +++ L + G + T T ++V + + F + +A + ++ Sbjct: 273 DQVADVL-EQMGAWIPGRTPTGKKQVNDTLLAQLAKDGNEFARSVIDAKKAGKWRKTWVD 331 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 ++ ++ DGR ++ L A RT R S P Q LP Sbjct: 332 RFLQTVDPDGRCHASINPLQA-RTARMSITEIPAQTLPAGDWM----------------- 373 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 +R C +A EG+ + D E RVLA ++G+ ++AF G+DL++ T Sbjct: 374 -----------IRRCFLADEGELIASVDYQAQELRVLAALSGDPTMIRAFAEGQDLHLLT 422 Query: 413 YARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 +F +TKD +R KV+ Y GGA + ++ TGL +V Sbjct: 423 ARAAFG---DHITKDDPERKYAKVVNFGRVYGGGA---KTVSEQTGLGFMAAKQVVDG-- 474 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 ++ A R + E A++ I T RV R N L Q+ + Sbjct: 475 ----FDKAYPGVRVLSHKLQEEAVKSGQIVTPTGRVLPV---DQDRAYAALNYLIQSTSR 527 Query: 531 TIENGKAIIARKRRDVP 547 + GKA+I R Sbjct: 528 DV-TGKALIRLHRAGFG 543 >gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2] gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2] Length = 942 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 89/499 (17%), Positives = 160/499 (32%), Gaps = 119/499 (23%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VD L++ ++ + +L + +L + +L Sbjct: 540 DIETPLVPVLVAMERTGMLVDPGCLKDLSEGLESQIDELAVRIRALAGDSDFNISSPMQL 599 Query: 240 KTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 LF GL + L +T T RVL + + R + + T Sbjct: 600 SHILFDVMGLPTKGLKKTHRGYYSTNARVLDELAQDNELVRLILEYREKTKIKS-----T 654 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 ++ + R + R H +Q IT +S+ Sbjct: 655 YLDTLGPLRR---------------------------QDGRVHTTYNQTITATGRLSSSN 687 Query: 354 PDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 P+ I + V++ A EG + D + IE R+LA ++G++ ++AF GED Sbjct: 688 PNLQNIPTRSELGHTVKTAFSAGEGALFLAVDYSQIELRLLAHLSGDEHLIRAFREGEDF 747 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T AR F V +VT R+ K + + Y A + T + ++ ++ Sbjct: 748 HAETAARVFGVPVDEVTPRLRSRAKAVNFGIVYGQQAFGLSQ---TLDIPVSEAQEMID- 803 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + +A R + A E + T R Sbjct: 804 -----RYFEAYPGVRAFLDRTVAEAAERGYAETMFGR----------------------- 835 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 RR +P + MK R+ +N + Sbjct: 836 --------------RRPIPELRMKNATQRSF---------------GERTAMNHPMQ--- 863 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SML 647 G + I A+ R +AE + ++L VHDE+ E P + + +M+ Sbjct: 864 ------GSAADIIKIAMRR--VAERLHG-GDLHAKMILQVHDELDFECPIAEVADVSAMV 914 Query: 648 YHLMTSNPSWAKGLPLKAE 666 M +PL A+ Sbjct: 915 REEMEGVVK--LKVPLIAD 931 >gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] Length = 635 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 104/659 (15%), Positives = 208/659 (31%), Gaps = 154/659 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 AF FD D + L++ E D V+H + V + ++ + Sbjct: 95 IAFSFDGTT-----LYSDVERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECK-SK 147 Query: 93 WICTLVLARSN-------GLPSALKAVGEALKLSSQKM-EEGKELIARFCKGETHECLYD 144 ++ T ++A L LK + LS +++ +GK+ E Y Sbjct: 148 YLDTAIMAYLLNPSESNYDLERVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYI 207 Query: 145 RNKPNH----REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200 + +H ++ F E ++ K L E L + +++ G+ +D Sbjct: 208 CGRCSHLFELKDKLMAFIE--------EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLD 256 Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260 + L++ +D +++ ++ G + ++L +LF + L + T+T Sbjct: 257 RNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKTKTGYS 315 Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320 ++LT V +++ ++ Sbjct: 316 TDSEVLEQLTAYNDIVSE----------------------------IIEYRQLTKLKSTY 347 Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGK 374 F P R H Q++ +++P+ I +R I + Sbjct: 348 IEGFLPLMD-ENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDG 406 Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434 +V AD + IE RVLA ++ ++ ++AF ED+++ T + F V P VT + R KV Sbjct: 407 YIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKV 466 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y +A ++ + + + + E A Sbjct: 467 VNFGIIYGISDY---GLAKDLKISRKEAKEYIDN------YFEKYKGVKEYIEKVIRFAK 517 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554 E+ ++ I +RR +P + + Sbjct: 518 ENGYV-------------------------------------TTIMNRRRYIPEINSRNF 540 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 + R +NT +Q + DI+ M Sbjct: 541 T---------------QRSQAERLAMNTP------------------IQGSAADIIKMAM 567 Query: 615 MNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + ++L VHDE+V +T D E +L M + +PL E Sbjct: 568 VKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKESMENVIK--LKVPLVVE 624 >gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] Length = 866 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G+ V+ + L+ E + +E+ L + ++L Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL K P ++ R S+ + L Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T +Q +T +++P+ Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I EG L+ AD + IE RVLA ++G++ + AF D++ Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT R+ K + + Y G F ++ ++ Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +A+ + E +P ++ + + + Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589 G + RR +P + R +N Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+N ++L VHDE++ + + Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 +L M + +PL + Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855 >gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101] gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101] Length = 866 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G+ V+ + L+ E + +E+ L + ++L Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL K P ++ R S+ + L Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T +Q +T +++P+ Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613 Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I EG L+ AD + IE RVLA ++G++ + AF D++ Sbjct: 614 QNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT R+ K + + Y G F ++ ++ Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +A+ + E +P ++ + + + Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589 G + RR +P + R +N Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+N ++L VHDE++ + + Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 +L M + +PL + Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855 >gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] Length = 811 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 78/475 (16%), Positives = 151/475 (31%), Gaps = 108/475 (22%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G V + + + V +L++ + G + ++L Sbjct: 413 EIELPLIFTLDSMEKWGIRVKGEELKSYGEKLQVRIAELEKLIYEQA-GEEFNINSPKQL 471 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + G+ T+T +KL P+ V + Sbjct: 472 GVILFEKMGIPGGRKTKTGYSTAADILEKLAPEQPIVND--------------------- 510 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L++ ++ + R H +Q IT +++P+ I Sbjct: 511 -------ILEYRQLTKLKSTYADGLSA-VIEADGRIHSTFNQTITATGRISSTEPNLQNI 562 Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 + +R + +G + AD + IE RVLA M+G++ ++A+ ED++ T + Sbjct: 563 PVRMELGRLIRKVFVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAYREAEDIHRLTAS 622 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F+V +VT QR K + + Y + + + A ++ E Sbjct: 623 QVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAEYIE--KYFET 677 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + F + E ++ T R Sbjct: 678 YPKIKGFL----DGLVADGKEKGYVSTMLGR----------------------------- 704 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 RR +P L SG + R G R +N+ + Sbjct: 705 --------RRPIP-------------ELKSGNFMQ-RSFGE-RVAMNSPIQ--------- 732 Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 G + I A++R + +VL VHDE++ ET + S + Sbjct: 733 GTAADIIKIAMNR---VYQRLKEEGLQSRLVLQVHDELLIETKKEEVETVSRILE 784 >gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] Length = 908 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 90/529 (17%), Positives = 191/529 (36%), Gaps = 73/529 (13%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-------GLPSAL 109 +KE N+D + +N K N + I L++A G+ L Sbjct: 395 IKEFFRNSDSKFITYN-------FKPLLNEGVEIKNMDVDLMIAYHLISSQTKEGVEIPL 447 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 + + + ++ + GKE E + L +R+K +G Sbjct: 448 EQLS-GIDIAPYSEKFGKEAPGNLSTEEYGKFLTERSK----GIMETYG-------IAME 495 Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 EI + LE L E L + + +G +D + +++ + L +++ + Sbjct: 496 EIKGKDLLEVLEKTEMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLSDLQKKIFEIA- 554 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G + ++L LF + L T+T +KL +++ + Sbjct: 555 GEEFNLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDEEVLEKLKSDGVEIASY-------- 606 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 L++ ++ P R H +QI T Sbjct: 607 -------------------ILEYRKYAKLKNTYVDALPKLVD-SKDRLHTTFNQIGTTTG 646 Query: 348 TSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402 +S+P+ I +R IA G L+ D + IE RVLA ++ ++ + A+ Sbjct: 647 RLSSSNPNLQNIPVKTDEGMKIRQGFIADSGNVLMGIDYSQIELRVLAELSKDENLIAAY 706 Query: 403 ETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + EDL+ T + F + +V+++QR I K + ++ Y A ++ G+ Sbjct: 707 KNNEDLHRVTAKKIFELGEGEEVSREQRIIAKTINFSIIYGKTAF---GLSKELGIPQKE 763 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + N E++ ++F R + + ++ + + G R+ + K+ + Sbjct: 764 ATDYI--NRYFEQYPRVKDFERSIIDYAEKNGYTETYFGR--RRIIEGIISKNKNIK--- 816 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 N+ + ++ G A K+ + + + K ++ L+L L++ Sbjct: 817 NQAERMAVNSVIQGTAAEILKKVMIEIFKVIDGKEDISLLLQVHDELIF 865 >gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] Length = 897 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 88/528 (16%), Positives = 156/528 (29%), Gaps = 141/528 (26%) Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 D + R L L E L ++ + G VDV +L + Sbjct: 472 DTELERIDSSAL--LQEMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQRVRDAAESAY 529 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G + ++L+ LF + + T+T + L + F + Sbjct: 530 EVI-GEQVNLGSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFLKHLLE 588 Query: 284 SRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 R A + + L + + D R+ T + Sbjct: 589 HRDATRLRVTVEGLQKTVADDQRIHTTF-------------------------------N 617 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-----------KKLVVADLAGI 384 Q + ++DP+ I +R + + G + L+ AD + I Sbjct: 618 QTVAATGRLSSTDPNLQNIPVRTEAGRQIRHAFVVAPGPVAVGSGNIEFESLMTADYSQI 677 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R++A ++ ++ ++AF TGEDL+ +R+F V QV R+ K M L Y Sbjct: 678 EMRIMAHLSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYGLS 737 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A +A+ G++ Sbjct: 738 AY---GLAAQLGISREEA------------------------------------------ 752 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 K+ R + + LH+ E+ N RR LP Sbjct: 753 --KQQMEAYFDRFGGVRDYLHRVVEEARRNEYTATLFGRRRY---------------LPD 795 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618 S ++ R+ L I Q + DI+ M+N Sbjct: 796 LNSDNFQ----------------RRQSAERMALNAPI-QGTAADIIKVAMINVQKRLRTE 838 Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 + ++L VHDE+V E ++ L M +PL+ Sbjct: 839 QLSSRMLLQVHDELVIEVATGEQAAVEALVREEMGGAID--LSVPLEV 884 >gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] Length = 866 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G+ V+ + L+ E + +E+ L + ++L Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL K P ++ R S+ + L Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T +Q +T +++P+ Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I EG L+ AD + IE RVLA ++G++ + AF D++ Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT R+ K + + Y G F ++ ++ Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +A+ + E +P ++ + + + Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589 G + RR +P + R +N Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+N ++L VHDE++ + + Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 +L M + +PL + Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855 >gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463] Length = 650 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 88/511 (17%), Positives = 172/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ +L+ ++ G + ++L Sbjct: 252 EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQA-GEKFNLNSPKQLGH 310 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+T VL K +P ++ + R A + + L++ + Sbjct: 311 ILFEKLGLPVIKKTKTGYSTAVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 369 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H Q +T + DP+ Sbjct: 370 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 398 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+Q +AF+TG D++ T Sbjct: 399 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHT 458 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P +VT R K + + Y ++ G++ + Sbjct: 459 AMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKRAQEFIDN--- 512 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E +P ++ + +++A ++ Sbjct: 513 -------------YFEQYP----------------------------QIEDYMNKAVQEA 531 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A I +RR +P ++ KK + R+ R+ +N+ Sbjct: 532 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 569 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K +V+ VHDE++ + P + Sbjct: 570 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETI 618 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 619 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 647 >gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] Length = 910 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 101/648 (15%), Positives = 190/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D H++ + Sbjct: 357 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 413 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E ++ + Sbjct: 414 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVED--------NS 465 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 466 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAG 525 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 D+ + L D T+ ++ + + ++L+ LF + + T+ Sbjct: 526 IAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTK 584 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 585 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 638 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 639 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 673 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 674 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 733 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 734 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 761 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 762 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 805 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 806 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 834 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 835 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 882 >gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5] gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5] Length = 595 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 118/566 (20%), Positives = 196/566 (34%), Gaps = 92/566 (16%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69 +D G+ Y++ L FG D PVEL D + V ++ AL+ +V Sbjct: 40 VDTETTGLDIYSDTFECRLVQFGTQDEAWVVPVELGDVFIEDV--RIAIGALKR----MV 93 Query: 70 AHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLSS------- 120 N+ F+ VL CF +++ R + T +LA+ P +A G L Sbjct: 94 LQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVD-PRPFEAGGFGHSLEELIAKFIS 152 Query: 121 -QKMEEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 + E K+L+A+ + H E + Y D T + K L P Sbjct: 153 EDQAENVKKLMAKLAAEHKTTKAKIWSTIDLFHPE----YLLYAGMDTIFTARVCKSLTP 208 Query: 178 LSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L E ++ + I+ +G+ +DV + +L + ++ E + T Sbjct: 209 LVPDVSRSLVPYEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQEVW--EAIAFTEYG 266 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-KKLTPQAIQVFNNRMRASRSAV 288 V E L L E G+ + TET ++V ++ KL ++ A + Sbjct: 267 VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQVNAALLDKLVEDGNELAAIAQEAKKLGK 325 Query: 289 ---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + ++ +S+ R + L A RT R S P Q LP Sbjct: 326 WRKTWVQKFIDTRDSEDRCHTFINPLQA-RTSRMSITGIPAQTLPSSDWI---------- 374 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 VR C IA G + D E RVLA ++G++ ++AFE G Sbjct: 375 ------------------VRRCFIAEPGDVMASVDYQAQELRVLAALSGDRNMIEAFENG 416 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 DL+ T + R +GK Y GGAKA A G+++ Sbjct: 417 ADLHQMTA---------DAAQVPRKVGKTANFQKVYGGGAKAL---AEAVGISIPVAK-- 462 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 E + + + A + +I A R SR N + Sbjct: 463 ----RVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAMGR---RLPVDSSRTYSALNYMI 515 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYM 551 Q+ + + I + P + + Sbjct: 516 QSSSRDVTCRALIRLHEAGYTPYLRL 541 Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 12/142 (8%) Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574 + +++ +A + + + R Y ++ + L + +GR+ + Sbjct: 437 ANFQKVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAM 496 Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT--VHDEI 632 R +++ TY ++Q+ SRD+ ++ +AGY L +HDEI Sbjct: 497 GRRLPVDS-------SRTY--SALNYMIQSSSRDVTCRALIRLHEAGYTPYLRLPIHDEI 547 Query: 633 VCETPDTD-EFNASMLYHLMTS 653 V P ++ E A+ + HLM Sbjct: 548 VASLPASEAERAAAHIGHLMQE 569 >gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] Length = 911 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 111/643 (17%), Positives = 207/643 (32%), Gaps = 152/643 (23%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSA 108 ++ ++ L D+ N+ E VL L I ++ L + + Sbjct: 385 ELLNSLVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 443 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-------RNKPNHREAWRLFGEYC 161 L + + + E +F E +E L+ H + + ++ Sbjct: 444 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDH- 502 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + R+I E L + ++ G +D A L Q D +L+++ Sbjct: 503 -QQAELYRQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQ 551 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFN 278 + G + ++L LF + T+T VL + P + Sbjct: 552 IYEEA-GQEFNINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQ 610 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + + L+E + P S+ H Sbjct: 611 YRQLA-KLNSTYVKGLLEVV------------------------------NPDDSKIHTR 639 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392 Q +T + DP+ I +R + S EG ++ +D + IE RVLA + Sbjct: 640 YLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHV 699 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKM 451 G++ KAFE+GED++ T F ++ Q +T DQR K + + Y + Sbjct: 700 TGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDF---GL 756 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A G + +++T + + W+ ++ A + ++ T Sbjct: 757 AQRLGTSRIEGKEIIQT-----YFHEFPKVKNWI-DSIIALAHKQGYVET---------- 800 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 IA++RR +P ++ K + RS Sbjct: 801 ---------------------------IAQRRRYLPDIHSKNF---------NLRSFA-- 822 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625 R+ NT +Q + DI+ M+ +A ++ Sbjct: 823 ----ERTATNTP------------------IQGSAADIIKIAMIKMQQALDDNHLKAKML 860 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 L VHDE++ E P + L +M S +PL+ E Sbjct: 861 LQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEA 901 >gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] Length = 866 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G+ V+ + L+ E + +E+ L + ++L Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL K P ++ R S+ + L Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKA 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T +Q +T +++P+ Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I EG L+ AD + IE RVLA ++G++ + AF D++ Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT R+ K + + Y G F ++ ++ Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +A+ + E +P ++ + + + Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589 G + RR +P + R +N Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+N ++L VHDE++ + + Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 +L M + +PL + Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855 >gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] Length = 876 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 81/510 (15%), Positives = 164/510 (32%), Gaps = 131/510 (25%) Query: 174 RLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 +E L K EQ L Y+ ++ G+ VD +E K+ +E+ SL+ + Sbjct: 470 HMEELLYKVEQPLIYVLASMECEGFKVDKDKLVEQEGKFKIEIDKVQKEIYSLS-EEEFN 528 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++L LF + L + T+T VL K P ++ R + Sbjct: 529 INSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIVEKIIYYRQLT-KLYST 587 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + L + D ++ + +Q +T Sbjct: 588 YIEGLKAVIQEDDKIHSSF-------------------------------NQTVTTTGRL 616 Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R + E ++ AD + IE RVLA +A ++ + AF Sbjct: 617 SSTEPNLQNIPIKYEMGKEIRKIFVPENEDCVILSADYSQIELRVLAHIADDENLISAFI 676 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 D++ T + F V +VT QR+ K + + Y G + A ++ Sbjct: 677 NHSDIHTKTASEVFKVPIDEVTSAQRSNAKAVNFGIVYGIGDFSL---AKNLKISRKEAK 733 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + T +++ +V ++ Sbjct: 734 LYIDTYF-----------------------------------------ERYPKVKLYMDD 752 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + + + + + + +RR +P + + R G R +NT Sbjct: 753 IVKEAK--VNSYVTTLMNRRRFIPEIKSSNK--------------IVRSFGE-RLAMNTP 795 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETP 637 +Q + DI+ M+N + + ++L VHDE++ Sbjct: 796 ------------------IQGSAADIIKIAMVNVYRRLEENKLKSKLILQVHDELILNVY 837 Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666 + N ++ M +PL+ + Sbjct: 838 KEEIDNVKSVVKEEMEKVLQ--LKVPLEVD 865 >gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] Length = 912 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 101/606 (16%), Positives = 180/606 (29%), Gaps = 154/606 (25%) Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 W+ + L SALKA+ L + + + A + E H Sbjct: 392 SWLKGSAPKAVHDLKSALKALS-GRGLDLDGVVDDTSISAYLIQPERRNYDLADLSLYHL 450 Query: 152 EAWRLFG------------------EYCKGDVTVTREIFKRLEP----------LSSKEQ 183 E + T+++ P L+ E Sbjct: 451 ETPMTVSASKDAGQLDLGLEGDDGAQEAVLRAFATQKLSSFFAPILLERNAEQLLTGLEL 510 Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G V TL E ++ G + ++L+T L Sbjct: 511 PLARVLSGMELAGVAVSKETLDTLMADFGKTIETAQTEAYAII-GHEVNLGSPKQLQTVL 569 Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303 F E G+ +T + LT + F +++A R A T+ + S G Sbjct: 570 FDELGMPKTKKIKTGFSTDAEALADLTTKHPHPFLLQLQAYRDATKLRQTVEGLIKSIG- 628 Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII--- 360 +R H Q + +++P+ I Sbjct: 629 ---------------------------SDTRVHTTYAQNVAATGRLSSNNPNLQNIPIRS 661 Query: 361 --SDCVRSCVIASE-----GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R + + + L+ AD + IE R++A ++G++ ++AF+ GEDL+ Sbjct: 662 EEGRRIRGAFVVGQKSTKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVG 721 Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473 + FNV P +VT R+ K M L Y + ++ ++++ L+K Sbjct: 722 SHIFNVEPQEVTSAMRSKVKAMSYGLVYGLSSF---GLSKQLNISVDEARTLMK------ 772 Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533 R + + L EQ Sbjct: 773 --------------------------------------DYFDRFGAVRDYLRGVVEQARL 794 Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593 +G RR LP L + RQL RE + Sbjct: 795 DGFTETIESRRRY---------------LPE---------------LTSDNRQL-REMSE 823 Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASM 646 L I Q + DI+ M+ ++L VHDE+V E + + + ++ Sbjct: 824 RAALNAPI-QGSAADIIKRAMLGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQAL 882 Query: 647 LYHLMT 652 + M Sbjct: 883 VIAQMA 888 >gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 814 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 65/372 (17%), Positives = 126/372 (33%), Gaps = 55/372 (14%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 L E + + + G VD+ + L + + + Sbjct: 472 DAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGV 531 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L+ LF E G+ T+T + + L + F + A R Sbjct: 532 I-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR 590 Query: 286 SAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 + ++ L++A+ +DGR+ H +Q Sbjct: 591 DVTRLKVTVDGLLQAVAADGRI-------------------------------HTTFNQT 619 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396 I +++P+ I +R + +G +L+ AD + IE R++A ++G++ Sbjct: 620 IAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDE 679 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++AF TGEDL+ +R+F V +VT + R K M L Y A + Sbjct: 680 GLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQ---QLK 736 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + A R E A +D + T R R+ Sbjct: 737 ISTEEANEQMDAYFAR------FGGVRDYLRAVVERARKDGYTSTVLGR-----RRYLPE 785 Query: 517 VSELWNELHQAF 528 + ++ +A Sbjct: 786 LDSSNRQVREAA 797 >gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly] gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly] Length = 922 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 93/630 (14%), Positives = 195/630 (30%), Gaps = 156/630 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALK 117 L N+ ++ N F+ VLK + ++A P +L + Sbjct: 409 LFNSQPKLIGQNYKFDYKVLKRH---GFNVISAYFDTMIAAYVIDPNTKVSLDFLAA--- 462 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K L+ K +E + ++ + Y D +T +F L Sbjct: 463 ---------KYLMH---KNIKYEEIVPQHSTLKDIPLEIASNYAAEDADITFRLFNILRK 510 Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + + E + + + G +D ++ E ++ E+ + Sbjct: 511 KLKEDNLESLMKNIEMPFSNVIIEMEENGIYLDSNYLTQYGHELEQELKTIENEVIQ-SI 569 Query: 228 GLVSSSRCLEKLKTWLFLETG--LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G+ + ++L T LF + + ++T +VL + K ++ N R A Sbjct: 570 GIEFNLNSSKQLHTILFEKLNIIVPKNVKQDSTDIKVLETIKDQHESIEKLINYRQLA-- 627 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + ++ H Q T Sbjct: 628 -----------------------------KLKNTYTDNLIEFINEKTNKIHTNFIQTKTA 658 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++ P+ I +R+ ++G + AD + IE +LA ++ ++ ++ Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIE 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +D+++ T ++ F V A +T R I K + + + L++ Sbjct: 719 AFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGII-----YRMSAFRLSQELSIK 773 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 E+A+NF + + FI + VK+ Sbjct: 774 R--------------EEAQNFIDSYFNLYSKI---KTFIQNQIDFVKQN----------- 805 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + ++RR + + + G R + Sbjct: 806 -------------GYSETLLKRRRYIREINSQN---------------YLERTGAERMAI 837 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 N+ I+Q + DI+ M+ I+L VHDE++ Sbjct: 838 NS------------------IIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLI 879 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664 E+P+ + A ++ M N ++ +PLK Sbjct: 880 ESPEEECEKAQIIIKEMMEN-AYPLKIPLK 908 >gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239] gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239] Length = 866 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G+ V+ + L+ E + +E+ L + ++L Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL K P ++ R S+ + L Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T +Q +T +++P+ Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I EG L+ AD + IE RVLA ++G++ + AF D++ Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT R+ K + + Y G F ++ ++ Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISR----------- 719 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +A+ + E +P ++ + + + Sbjct: 720 -----REAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589 G + RR +P + R +N Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+N ++L VHDE++ + + Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 +L M + +PL + Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855 >gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] Length = 909 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 88/537 (16%), Positives = 186/537 (34%), Gaps = 76/537 (14%) Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 LK LE+ ++ + N ++ +L N I + +++ L +V Sbjct: 385 QLKPILEDVSISKIGQNLKYDAHILS---NYKIDLQGISDDVIVKSYC-----LNSVATR 436 Query: 116 LKLSSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKGDVTV--- 167 ++ +L + +T + ++ + Y +V + Sbjct: 437 HNMN--------DLSEYYLNYQTINFVDILGKGKKQVTFNQVNVEIALLYVCENVIITSL 488 Query: 168 -------TREIFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + RL L E L + + G +DV + T + + + Sbjct: 489 LNHMLDEEIAQYPRLVKLYQNLELPLIKVLLCMERNGVELDVNILSTQQLDITQQMEDIK 548 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279 ++ L V + ++++ LF GL L L + T + V S+N++ + Sbjct: 549 NQVFELADN-VFNLESPKQIQRILFESKGLGLIPLRK-TPKGVPSTNEEALKLLDHPVVD 606 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 L + ++ V P + R H Sbjct: 607 L--------------------------ILSYRTLAKLNSTYLEVLPRKIDLNTHRLHTSY 640 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394 +Q++T +S+P+ I C+R I +G ++ AD + IE R++ ++ Sbjct: 641 NQVVTATGRLSSSNPNLQNIPIFSEQGSCIRGAFITGKGNVIISADYSQIELRIMTQLSK 700 Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454 +Q L+AF +D++ T + FN+ +VT + R K + L Y A +A Sbjct: 701 DQNLLEAFNNDKDVHSETASTMFNIPIDEVTSEYRRRAKAINFGLIYGMSAY---GLAKQ 757 Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514 G++ + T + D + +N E A ++ T R + Q + Sbjct: 758 IGVSRTKAKQYMDT------YFDNYPSVLYYMDNIKEIAKVQGYVETIMGR-RLYLPQIN 810 Query: 515 SRVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 ++ L L A ++ A I +K ++ +D ++ +++ LV+ Sbjct: 811 AKNKMLQQHALRTAINAPMQGSSADIIKKSMFDVYTWIGQDNPDIRMIMQVHDELVF 867 >gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13] gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13] Length = 866 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G+ V+ + L+ E + +E+ L + ++L Sbjct: 467 DIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL K P ++ R S+ + L Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKA 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T +Q +T +++P+ Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I EG L+ AD + IE RVLA ++G++ + AF D++ Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT R+ K + + Y G F ++ ++ Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +A+ + E +P ++ + + + Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589 G + RR +P + R +N Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+N ++L VHDE++ + + Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 +L M + +PL + Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855 >gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 908 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 107/657 (16%), Positives = 184/657 (28%), Gaps = 160/657 (24%) Query: 34 AFGFDDHPVELWDCVHDPVM-----PQVLKEA--------LENTDVTIVAHNSYFERTVL 80 A+ V P L EA L + V H++ + + Sbjct: 354 AWALGTGSVAEVALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAK---SAM 410 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + I LA P +AL L + L + Sbjct: 411 RVFAEHGWSIEGVTMDTALAAYLVKPGRRSFDLDALSL--------EYLHRELAPAAVAD 462 Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTIND 194 EA L + + + + RLE + E L + Sbjct: 463 GQLAFGADEGAEAEALMVQ-ARAILDLGEAFGSRLEEVGAADLLRDMELPTSALLARMER 521 Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254 G D A + Q+ + +E + G + ++L+ LF E L Sbjct: 522 HGIAADRAHLEAMEQMFAGAVQQAVKEAHA-AAGHEFNLGSPKQLQEVLFGELALPKTKR 580 Query: 255 TETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311 T+T + L Q + V R R + + L++ + +DGR+ T Sbjct: 581 TKTGYTTDADALAWLATQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADGRIHTT---- 636 Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRS 366 +Q + ++DP+ I +R Sbjct: 637 ---------------------------FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRR 669 Query: 367 CVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 + EG + L+ AD + IE RV+A ++ ++ ++AF +GEDL+ T A+ F V + V Sbjct: 670 GFVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVD 729 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K M L Y A + + L Sbjct: 730 AEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAAEARAL-------------------- 766 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRR 544 R + + L + ++ G A + +RR Sbjct: 767 ------------------------MDAYFERYGGVRDYLRRVVDEARATGYTATLFGRRR 802 Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604 +P + ++ + RE L I Q Sbjct: 803 YLPDL--------------------------------SSDNRQRREAAERMALNAPI-QG 829 Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654 + DI+ M+ A ++L VHDEIV E + L M Sbjct: 830 TAADIVKIAMLKVDGALRETDLASRMLLQVHDEIVLEVAPGERPAVEELVRREMADA 886 >gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] Length = 880 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 78/488 (15%), Positives = 144/488 (29%), Gaps = 119/488 (24%) Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L E + RG VD + +L + + G + Sbjct: 477 LSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEA-GEEFNIN 535 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF L T+T VL + L P + R + Sbjct: 536 SPKQLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTY-- 593 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 A + G R H + +Q IT + Sbjct: 594 ---------------------ADGLANYIGDD---------ERIHGKFNQTITATGRISS 623 Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 ++P+ I + +R + EG V AD + IE RVLA ++G++ + A+E + Sbjct: 624 TEPNLQNIPARVELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYEMEQ 683 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T + F V QV+ QR K + + Y A + + + Sbjct: 684 DIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQ---DLKITRKQAQEYI 740 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++ + + E E+ F+ T +R++ K S + Sbjct: 741 D------KYFETYPKVKEYLNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQ------- 787 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 R+ G R +N+ + Sbjct: 788 --------------------------------------------RNFGE-RVAMNSPIQ- 801 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 G + I A+ R M + K ++L +HDE++ E D++ Sbjct: 802 --------GSAADIIKIAMIR----VNMELKKRKLKSRLILQIHDELLIEAHDSE---VE 846 Query: 646 MLYHLMTS 653 + ++T Sbjct: 847 EVKGILTR 854 >gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3] gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4] Length = 892 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 101/648 (15%), Positives = 190/648 (29%), Gaps = 154/648 (23%) Query: 34 AFGFDDHPVE-----------LW-DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVL 80 ++G VE +W D + + A L + D H++ + Sbjct: 339 SWGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAK---GPV 395 Query: 81 KACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET 138 +A + C LA P A K + + E ++ + Sbjct: 396 EALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVED--------NS 447 Query: 139 HECLYDRNKPNHREAWRLFGEYCK-GDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + + D + + E+ + DV E E L E + ++ G Sbjct: 448 DQAMLDFGEDHFAESMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAG 507 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 D+ + L D T+ ++ + + ++L+ LF + + T+ Sbjct: 508 IAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTK 566 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGA 313 + + L F + R A+ ++ L++ + DGR+ T Sbjct: 567 SGYTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQTVDGLLKEIRDDGRVHTT------ 620 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q + + DP+ I +R Sbjct: 621 -------------------------YMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGF 655 Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 + EG + L+ AD + IE R++A ++G+Q + AF++G+D + T + F VAP V+ Sbjct: 656 VVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVA 715 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR+ K M L Y A + Sbjct: 716 QRSKIKAMNYGLAYGLSAYGLSNQLKVS-------------------------------- 743 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 K+ SR ++ L + +Q G RR Sbjct: 744 ---------------VGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRY- 787 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP T+T + R+ L I Q + Sbjct: 788 --------------LPDL----------------TSTNRQRRDMAERAALNAPI-QGSAA 816 Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH 649 D++ M+ + ++L VHDE++ E +E + Sbjct: 817 DLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVT 864 >gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] Length = 866 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 154/504 (30%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + ++ G+ V+ + L+ E + +E+ L + ++L Sbjct: 467 DIELPLETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFELAD-EEFNINSPKQL 525 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL K P ++ R S+ + L Sbjct: 526 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQL-SKIYSTYVEGLKS 584 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 +++DG + T +Q +T +++P+ Sbjct: 585 VIDTDGSIHSTF-------------------------------NQTVTTTGRLSSTEPNL 613 Query: 357 LQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I EG L+ AD + IE RVLA ++G++ + AF D++ Sbjct: 614 QNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHT 673 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V +VT R+ K + + Y G F ++ ++ Sbjct: 674 KTASEVFKVPVEEVTPLMRSRAKAVNFGIVY--GIGDFS-LSQDLNISRK---------- 720 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 +A+ + E +P ++ + + + Sbjct: 721 ------EAKEYMDIYFERYP----------------------------KIKEYISKVIHE 746 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV-YRDVGNNRSYLNTTTRQLTR 589 G + RR +P + R +N Sbjct: 747 AQTKGYVLTMLNRRRY---------------IPEANASNKIVKALGERLAMNAP------ 785 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 +Q + DI+ M+N ++L VHDE++ + + Sbjct: 786 ------------IQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 +L M + +PL + Sbjct: 834 VKKLLKEEMENTIK--LSVPLDVD 855 >gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] Length = 843 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 98/501 (19%), Positives = 163/501 (32%), Gaps = 128/501 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VD + + ++ +L++ + G + ++L Sbjct: 441 EVELPLADVLAEMERVGMPVDARTLEEVGREIERRIAELEEAIFE-DVGHPFNIGSPKQL 499 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF E GL T+T +VL P A ++ R A + L++ Sbjct: 500 SEVLFEELGLPPVRRTKTGYSTDAKVLQQLALEHPIAERIIAWRELAKLKGTY-VEGLLK 558 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 + DGR+ H L+Q T + P+ Sbjct: 559 LVGEDGRI-------------------------------HTTLNQTTTATGRISSDSPNL 587 Query: 357 LQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R AS G+ LVVAD + IE R+LA M+ E ++AF+ GED++ Sbjct: 588 QNIPVRTETGMRIRDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTR 647 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T A F+V P VT + R K++ + Y Sbjct: 648 TAAEVFDVRPESVTPELRRRAKMVNFGILYGISGYGLAT--------------------- 686 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + HP A +R + + ++H RV+E + ++ + Sbjct: 687 ------------RLGNVHPAEA----------DRYIQRYFERHPRVTEF---IRKSLAEA 721 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 E G A RR +P R+ N R+L Sbjct: 722 EELGYATTLFGRRRY---------------VPELRN------------KNKNVRKLGERI 754 Query: 592 TYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647 + + VQ + DI+ M G D+++ VHDE+V + + Sbjct: 755 AFNAR-----VQGSAADIIKVAMVDLAPRLGPLGADMLMQVHDELVFDVDRD---RVEEV 806 Query: 648 YHLMTSNPSWAKGL--PLKAE 666 L A L PL+ E Sbjct: 807 AALAAERMVAAYDLDPPLEVE 827 >gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium] Length = 803 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 148/432 (34%), Gaps = 68/432 (15%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 EQ L + Q IN G +D A L+ + E T L+ ++ + G + +++ Sbjct: 394 EQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHA-GREFNINSPKQMGE 452 Query: 242 WLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 LF E GL ++ +T T + L ++ P ++ R + ++ L Sbjct: 453 VLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYR-ELQKLVSTYIDNLP 511 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 +++DG R Q + +P+ Sbjct: 512 PLVSADG-------------------------------RLRTTFVQTGAATGRMASQNPN 540 Query: 356 PLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I S +R +AS G +V D + IE R+ A ++ ++ ++ F GED++ Sbjct: 541 LQNIPIRTEESKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHT 600 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 R F V P +VT++ R KV+ + Y G A + G + Sbjct: 601 GVAVRVFGVTPEEVTREMRRKAKVINFGILYGMGVNALRGNLGE-GTSREEAQEFFNA-- 657 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + E A ++ + T R ++ + S + + + Sbjct: 658 ----YFNTFTRLAEYLEETKAFARKNGYTETLFGR-RRHFPGMQSTAPFIRAQAERMAIN 712 Query: 531 TIENGKAIIARKRRD---VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 G A A + + +K +++ ++L L++ ++ NN Sbjct: 713 APVQGTAADAMRVAMNLVYQYIQTEKKTDDVHILLQVHDELLF-EIKNNV---------- 761 Query: 588 TREYTYGGKLTE 599 T KL E Sbjct: 762 --LETEIPKLVE 771 >gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] Length = 939 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 94/643 (14%), Positives = 197/643 (30%), Gaps = 160/643 (24%) Query: 57 LKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAV 112 +K LE+ V V N ++ R LK ++ T++++ S + + Sbjct: 413 IKPYLEDPTVKKVGQNIKYDYRIFLKHGIQMN----SIEDTMLMSYSLDAGKNRHGMDLL 468 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 E + K K++ T + + +Y D +T ++ Sbjct: 469 SELH--LNHKTISFKDVAGIGKSQVTFDFV----------DIEQAKDYACEDADITLRLY 516 Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 K E + E+ L + ++ + G +D + L++ ++E L++++ Sbjct: 517 KMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKLSKKFEIEIQNLEKKI 576 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL-TPQAIQVF 277 + + ++L ++ + + T+ T VL V Sbjct: 577 FKIAK-EEFNIGSPKQLGDVIYEKLKIAGSKKTKKGNFATNVAVLEDLASQGHEFPKLVL 635 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 N R + S+ P + R H Sbjct: 636 NWRQK-------------------------------SKLKNTYTDTLPTYINAKSKRVHT 664 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392 T +++P+ I +RS ++ + KL+ AD + IE R+LA M Sbjct: 665 SFLLAATTTGRLASANPNLQNIPIKNIEGKEIRSAFVSDKNSKLISADYSQIEMRILAHM 724 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + KAF ED++ T ++ F+V+ +V +D R K + + Sbjct: 725 GDVKELKKAFLNKEDIHTLTASQIFDVSLKKVDEDMRRKAKAINFGII------------ 772 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G++ A + ++ +AENF + Sbjct: 773 --YGISSYGLAKQISVSN-----SEAENFLKSYF-------------------------G 800 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 K + + NE + + + + R + + Sbjct: 801 KFPEIRDFMNE------------------------NITFCRKNGYVKTLF--DRKCHFPN 834 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626 + + N T R +Q + D+L M+ K +++ Sbjct: 835 INDK----NHTLRTFQER-----ACINAPIQGTAADLLRLAMIQIDKKISAKEIPASLLI 885 Query: 627 TVHDEIVCETPDTDEFNASM-LYHLMTSNPSWA--KGLPLKAE 666 VHDE++ E + D + + H M + +PL + Sbjct: 886 QVHDELLLECKEKDVSSVQQKIAHEMENASEPLVKFSIPLTVD 928 >gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1] gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1] Length = 903 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 111/643 (17%), Positives = 206/643 (32%), Gaps = 152/643 (23%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSA 108 ++ + L D+ N+ E VL L I ++ L + + Sbjct: 377 ELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 435 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-------RNKPNHREAWRLFGEYC 161 L + + + E +F E +E L+ H + + ++ Sbjct: 436 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDH- 494 Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 + R+I E L + ++ G +D A L Q D +L+++ Sbjct: 495 -QQAELYRQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQ 543 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFN 278 + G + ++L LF + T+T VL + P + Sbjct: 544 IYEEA-GQEFNINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQ 602 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R A + + L+E + P S+ H Sbjct: 603 YRQLA-KLNSTYVKGLLEVV------------------------------NPDDSKIHTR 631 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWM 392 Q +T + DP+ I +R + S EG ++ +D + IE RVLA + Sbjct: 632 YLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHV 691 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKM 451 G++ KAFE+GED++ T F ++ Q +T DQR K + + Y + Sbjct: 692 TGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDF---GL 748 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A G + +++T + + W+ ++ A + ++ T Sbjct: 749 AQRLGTSRIEGKEIIQT-----YFHEFPKVKNWI-DSIIALAHKQGYVET---------- 792 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 IA++RR +P ++ K + RS Sbjct: 793 ---------------------------IAQRRRYLPDIHSKNF---------NLRSFA-- 814 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625 R+ NT +Q + DI+ M+ +A ++ Sbjct: 815 ----ERTATNTP------------------IQGSAADIIKIAMIKMQQALDDNHLKAKML 852 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 L VHDE++ E P + L +M S +PL+ E Sbjct: 853 LQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEA 893 >gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4] gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Thermoanaerobacter tengcongensis MB4] Length = 871 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 99/657 (15%), Positives = 200/657 (30%), Gaps = 150/657 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 AF FD D + L++ E D V+H + V + ++ + Sbjct: 331 IAFSFDGTT-----LYSDVERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECK-SK 383 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 ++ T ++A + + LK + E DR + Sbjct: 384 YLDTAIMAYLLNPSESNYDLERVLKRYLKVDI--------LSHEEVFGKGKDRRRYEEVS 435 Query: 153 AWRLFGEYCKGDVTVTREIFKRL----------EPLSSKEQELWYLDQTINDRGYCVDVA 202 + C + E+ +L + L E L + +++ G+ +D Sbjct: 436 EEVMAEYICGR-CSHLFELKDKLMAFIEEMDMKKLLLEIEMPLVEVLKSMEVDGFTLDRN 494 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 + L++ +D +++ ++ G + ++L +LF + L + T+T Sbjct: 495 VLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKTKTGYSTD 553 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 ++LT V +++ ++ Sbjct: 554 SEVLEQLTAYNDIVSE----------------------------IIEYRQLTKLKSTYIE 585 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-EGKKL 376 F P R H Q++ +++P+ I +R I + + Sbjct: 586 GFLPLMD-ENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDGYI 644 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V AD + IE RVLA ++ ++ ++AF ED+++ T + F V P VT + R KV+ Sbjct: 645 VSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKVVN 704 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y +A ++ + + + + E A E+ Sbjct: 705 FGIIYGISDY---GLAKDLKISRKEAKEYIDN------YFEKYKGVKEYIEKVIRFAKEN 755 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ I +RR +P + + Sbjct: 756 GYV-------------------------------------TTIMNRRRYIPEINSRNFT- 777 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + R +NT +Q + DI+ M+ Sbjct: 778 --------------QRSQAERLAMNTP------------------IQGSAADIIKMAMVK 805 Query: 617 AT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 ++L VHDE+V +T D E +L M + +PL E Sbjct: 806 VYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVIK--LKVPLVVE 860 >gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27] gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27] Length = 912 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 148/399 (37%), Gaps = 45/399 (11%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E L + + +G +DV + +D E K+++ + G + + Sbjct: 510 LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLKIEKAIYEEA-GEEFNINSPK 568 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF++ L T+T + + L + Sbjct: 569 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 R L + ++ P SR H +QI T +SDP+ Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660 Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R +A GK L+ D + +E RVL M+ ++ ++A+ +DL+ T Sbjct: 661 NIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLT 720 Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 R FN++ ++ V+++QR I K++ ++ Y +A + + + +K Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E++ +F R + E EH G K+ S+ + ++ + T Sbjct: 776 FEQYPKVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + G A K+ V + + KDK + L+L L++ Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQVHDELIF 869 >gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a] Length = 829 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 75/400 (18%), Positives = 139/400 (34%), Gaps = 52/400 (13%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + G +D + V + K+ +E+ G + + Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYA-GYEFNIGSPK 487 Query: 238 KLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L + LF + L T+T VL S P + R + + L Sbjct: 488 QLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYRALT-KLQNTYVTGL 546 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ + DG R H Q T +++P Sbjct: 547 LKVVGEDG-------------------------------RIHSTFKQTETRTGRISSAEP 575 Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I + +R A +G LV AD + IE RVLA ++G++ KAF G D++ Sbjct: 576 NIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T ++ FN VT D R+ K + + Y GA + G+++ + +++ Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLS---KDIGVSVPKASEYIRS- 691 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + E A D ++ T R ++ ++ ++ L + + Sbjct: 692 -----YLSKYSGIAQYMELTVAKAKRDGYVETMFGR-RRYIKELAAKNKNLQAFGERVAK 745 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKN-NLILMLPSGRSL 568 T G A K + + KD + L+L L Sbjct: 746 NTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVHDEL 785 Score = 52.1 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Query: 577 RSYLNTTTRQLTREYTYGGKLTEN-IVQAVSRDILAEGMMNATKAG------YDIVLTVH 629 R Y+ + +G ++ +N +Q + DI+ M+ ++L VH Sbjct: 723 RRYIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVH 782 Query: 630 DEIVCETPDT-DEFNASMLYHLMT 652 DE++ E + E A +L M Sbjct: 783 DELIVEAKEDCAEKVALLLKEEME 806 >gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] Length = 950 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 95/628 (15%), Positives = 200/628 (31%), Gaps = 128/628 (20%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113 +LK LEN + + HN F ++LK +I + I ++L ++ + + Sbjct: 424 SILKPILENIKIKKIGHNMKFIFSLLKQH---NIHLSGPIFDVILELYVLYGTSNYQNIK 480 Query: 114 EALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-TVTREI 171 L ++ K + I K + + D + ++ + + Sbjct: 481 RFLNKTTILDHIFKFQQIYNNNKYLIKKNIRDIQLESSCSTQLIYAISNLHQILWTEIKQ 540 Query: 172 FKRLEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L+ + + E L + I D G +D ++ + ++ + L + LT G Sbjct: 541 HNELKKIFINIEIPLISVLSRIEDYGVLIDKKFLYSHSIKLNSQLNNLKTQAYQLT-GSS 599 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 + ++L+ L+ + L + T + + + ++ K Sbjct: 600 FNLDSPKQLQEILYNQEKLPIFKKTPHGAPSTSEEV------------LKKLSKKHSIPK 647 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ S+ + +R H +Q T Sbjct: 648 I---------------ILKYRSLSKLKSTYTNKLISMINKKSNRIHTSYNQTRTSTGRLS 692 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +++P+ I +R IA E ++ AD + IE R++A ++ + + F Sbjct: 693 STNPNLQNIPNRNYDGRKIRQAFIAPENSLIISADYSQIELRIMAHLSRDLKLINDFLEE 752 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 +D++ TT + F + VT +QR K + L Y A ++ + Sbjct: 753 KDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLIYGMTAF---GLSKQLSVTCQEAQKY 809 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 V ++ ++MQ K + +K+ VS L Sbjct: 810 VD-----RYFQRYPGVMQYMQ-------------------YIKDYAKKNGYVSTL----- 840 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 ++ +P +Y + G RS +N Sbjct: 841 --------------DGRKLYLPDIYSSNIS---------------QKKGAERSAINAPM- 870 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 Q + DI+ M++ +++ VHDE+V E +T Sbjct: 871 -----------------QGSAADIIKRAMISIDSWLQTDNIPVHMIMQVHDELVFEVNNT 913 Query: 640 -DEFNASMLYHLMTSNPSWAKGLPLKAE 666 + + LM + +PLK + Sbjct: 914 FVDIAVKQIRKLMEEC--FILNVPLKVD 939 >gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism HF4000_APKG10H12] Length = 891 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 103/649 (15%), Positives = 183/649 (28%), Gaps = 153/649 (23%) Query: 46 DCV---HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 D + L LE+ V + H+ + L A + + T++ + Sbjct: 356 DLTGSLDGGTVFGTLGPMLEDPQVRKIGHDLKRDMLWLAAHEIRLRGLE--LDTMIASYL 413 Query: 103 NGLPSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 V L+ + + + + K DR P+ Y Sbjct: 414 LDATRTTPTVETVALEHAGYQALTADTVRGKGAKAPDF----DRLPPD------GVLAYA 463 Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211 + + + L +E Q L + I G V ++ + Sbjct: 464 CERADLPLQAAEPLRARLDQERLAELYRELEQPLIPVLADIETAGIQVATDALAVQSRRM 523 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-----CQRVLSSN 266 D + ++L ++ +L G + +L LF + L T T VL Sbjct: 524 DADLSELQSQIYTLA-GEEFNINSPRQLSAILFEKLALPTRKKTGKTRAASTAADVLEEL 582 Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326 + V R + P Sbjct: 583 AQHHALPRLVIEWR-------------------------------AVQKLKGTYVDALPQ 611 Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADL 381 P R H +Q + +SDP+ I + +R +A +G L+ AD Sbjct: 612 LVRPDTGRVHTSFNQAVAATGRLSSSDPNLQNIPIRTPLGREIRRAFVARDGHVLISADY 671 Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441 + IE RVLA ++ + +AF ED++ T F + R K++ AL Y Sbjct: 672 SQIELRVLAHLSADTALTQAFIRNEDIHDKTALHVFGPDSGLDAHELRRRAKIINYALLY 731 Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501 A + T + A+ F E +P Sbjct: 732 GKTAFTLSRDIGVTP-------------------QAAQAFIDAYFEGYP----------- 761 Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561 + L ++ E+G+ RR + Sbjct: 762 -----------------AVRGFLDGVIDEARESGEVRTMFGRR---------------RL 789 Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620 +P R+ N R T +Q + DIL M++ A Sbjct: 790 VPELRN------------RNGQIRAAAERVT-----VNMPIQGTAADILKRAMIDLAGAL 832 Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 ++LTVHDE++ E P + + + L M +PL+ + Sbjct: 833 PPSAPMILTVHDELLIEPPRDEADSVADLVRDRMERAAD--LTVPLRVD 879 >gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24] gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24] Length = 955 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 108/644 (16%), Positives = 188/644 (29%), Gaps = 134/644 (20%) Query: 39 DHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97 D D + + A L + + V H LKA + + + Sbjct: 416 DGAAVYIDLSGQDAEAENVLAAWLRDPEAPKVMHGFK---AALKALSARGLELEGVVDDT 472 Query: 98 VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 ++ P L +E + + + D Sbjct: 473 SISGYLIQPDRRTYELAELAQHHLNIEISTAVAKAGQLELSFDG-DDSAAAGELVHAAAV 531 Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + K E LS+ E + + + G +D+ + Sbjct: 532 VHALSRYFEAELKERKAEELLSTLELPVSQVLADMELAGIAIDMQRMDE-QLADLAKVID 590 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277 QEL G + ++L+T LF E L ++ +S K L + F Sbjct: 591 NAQELAFAAIGHEVNLGSPKQLQTVLFDELQLPKTKKIKSGYTTDAASLKNLLEKTGHEF 650 Query: 278 NNRMRASRSAVLK---LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 ++ A R + L +L +++ DGR+ T Sbjct: 651 LVQLMAHRESSKLRQMLESLKKSVAEDGRIHTT--------------------------- 683 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARV 388 Q + +++P+ I VR + SEG + L+ AD + IE R+ Sbjct: 684 ----YAQNVAATGRISSNNPNLQNIPIRSEEGRRVRGIFVVSEGYECLLSADYSQIEMRI 739 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++G+ ++A+ GEDL+ + F+V QVT R+ K M L Y + Sbjct: 740 MAHLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSF-- 797 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 ++ ++++ L+K Sbjct: 798 -GLSKQLEISVDEARTLMK----------------------------------------- 815 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 + R + + L +Q +G RR LP Sbjct: 816 ---EYFDRFGAVRDYLRGVVDQARIDGFTATIEGRRRY---------------LP----- 852 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------Y 622 L +T RQL RE L I Q + DI+ M+ Sbjct: 853 ----------DLTSTDRQL-RENAERIALNSPI-QGSAADIIKRAMLGVHAELKAQGLKS 900 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665 ++L VHDE+V E + L M S +PL Sbjct: 901 RMLLQVHDELVLEVAAGEREAVEKLVTEQMGSAAD--LSVPLDV 942 >gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925] gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925] Length = 881 Score = 221 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 88/522 (16%), Positives = 178/522 (34%), Gaps = 84/522 (16%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG- 113 +++K+ E+ ++ ++H+ +L+ DI + +A PS + Sbjct: 378 ELIKKLFEDENIKKISHDIKNIYVILRKY---DIDAKNFSFDTKIAAYLLQPSKSDYILR 434 Query: 114 ----EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169 E L ++ + +E ++ +C E +E L K + E LF Sbjct: 435 DIILEKLSINIHESDEESKIKETYCIKEIYEKLQKEIKSANME--ELFYNV--------- 483 Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E L + ++ G+ +D + + V+ L++E+ Sbjct: 484 ------------ELPLVKVLASMECEGFKIDKDRLTEIGEKFKVKIETLEKEIHEFAD-E 530 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286 + + ++L LF + L + T+T VL K P ++ R Sbjct: 531 DFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIEYRQITKLD 590 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + + L ++ D + H +Q +T Sbjct: 591 STY-VEGLKHVIDED-------------------------------GKIHSSFNQTVTTT 618 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400 +++P+ I +R + + E + AD + IE RVLA +A ++ + Sbjct: 619 GRLSSTEPNLQNIPIKYEMGREIRKVFVPNNEESVIFSADYSQIELRVLAHIANDEKLID 678 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF+ +D++ T + F V +VT R+ K + + Y GA + ++ Sbjct: 679 AFKHHKDIHTITASEVFKVHIDEVTPLMRSNAKAVNFGIVYGIGAFSLS---KDINVSRK 735 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + T + + + + + + D F+ T R K+ + SR + Sbjct: 736 EAKEYIDT--YFSRYPNVKKYIDEIISKAEQ----DGFVTTIMNR-KRYIPEVQSRNKIV 788 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + + T G A K V VY + K NL L Sbjct: 789 RSFGERLAMNTPIQGSAADVIKLAMVH-VYEELIKRNLKSTL 829 >gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] Length = 928 Score = 221 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 108/637 (16%), Positives = 199/637 (31%), Gaps = 149/637 (23%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK LE+ V + N ++ TVL+ ++I + T+V++ +L G Sbjct: 403 LKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYD--DTIVMSFDLDAGQSLAGHGM-- 457 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKRL 175 E K + C C +++ + E EY D VT ++K Sbjct: 458 ------DEAAKTHLNHICISFKDVCGTGKSQISFAEVPLDKATEYAAEDADVTLRLWKLF 511 Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + + E + L + + G VD L+ L+ E+ L Sbjct: 512 KTRIANEGATRVYELVDRPLVSVIAKMEHEGIKVDREALSRLSAEFTAGIAALETEIHGL 571 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-TCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L LF + G ++ ++ ++L Q ++ Sbjct: 572 A-GQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKVQGAEIA------- 623 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 G++ L + S+ Q SR H Sbjct: 624 -----------------GKV---LDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSLSGA 663 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R +A G ++ AD + IE R+ A MA Sbjct: 664 QTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALK 723 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF GED++ T + F +V +D R K + A+ Y G + +A ++ Sbjct: 724 EAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILY--GISRW-GLAGRLEISA 776 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++A++ E P ++ Sbjct: 777 ----------------DEAQDMISRYYERFPGISL------------------------- 795 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 + E+ G R+ + + K S+ + G R+ Sbjct: 796 ---YITDTIEKARSKGYTETLFGRKT----WFPRIKA----------SVQHERQGAERAA 838 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDEI 632 +N +Q S DI+ M A ++L VHDE+ Sbjct: 839 INAP------------------IQGTSADIIKRAMARMGPALAAEGLHDVKMLLQVHDEL 880 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAE 666 V E P+ D E ++++ +M +PL E Sbjct: 881 VFELPEGDVEQASAVIRRVMEGAAEPIVKLSVPLGVE 917 >gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10] Length = 887 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 87/512 (16%), Positives = 169/512 (33%), Gaps = 136/512 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ L++++ G + ++L Sbjct: 489 EIPTARVLAKMEINGMKVEASTLIQLQNEFAVKLQDLEKKIYQQA-GEEFNLNSPKQLGH 547 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+T VL K +P ++ + R A + + L++ + Sbjct: 548 ILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVKEILDYRQIAKIQSTY-VKGLLDVI 606 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H Q +T + DP+ Sbjct: 607 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 635 Query: 359 II-----SDCVRSCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + +G D + +E RVLA ++G+ +AF+TG D++ Sbjct: 636 IPTRTEEGKQIRKAFVPSDPDGYIF-SCDYSQVELRVLAHVSGDVHMQEAFKTGYDIHSH 694 Query: 412 TYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F++ P +VT R K + + Y ++ G++ + Sbjct: 695 TAMKIFHLDSPDKVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRKQAKEFIDN-- 749 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E +P ++ + + +A ++ Sbjct: 750 --------------YFEQYP----------------------------QIKDYMDKAVQE 767 Query: 531 TIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 E G A I +RR +P ++ KK + R+ R+ +N+ Sbjct: 768 AREKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------ 806 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M+N K +V+ VHDE++ + P + Sbjct: 807 ------------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELET 854 Query: 644 ASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 855 IKKIVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12] gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12] Length = 595 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 110/578 (19%), Positives = 199/578 (34%), Gaps = 85/578 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73 +D G+ Y++ L FG + +P+ + EAL D +V N+ Sbjct: 40 VDTETTGLDIYSDTFRCRLVQFGTQSEAW-VLPVELGGGIPENVIEALYEVD-KLVMQNA 97 Query: 74 YFERTVLKA--CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--------SSQKM 123 ++ VL ++ + + T +LA+ P +A G L ++ Sbjct: 98 SYDLQVLDQIGYAAMEDLWPKVLDTQILAKLVD-PRPFEAGGFGHSLEELIAEFIDKEQA 156 Query: 124 EEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 E K L+ + K + H E + Y D T I +L PL Sbjct: 157 ENVKGLMTKLAKEHKTTKAKIWSTIDLFHPE----YLTYAGMDTIFTARICSKLAPLVPD 212 Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E +L + I+ +G+ +DV A L+ E++ D + YGL + Sbjct: 213 VSRSLVPYEHKLSEICSYIDRKGFLLDVEYAQALSDKWLYEKSVWDAIAFT-EYGLE-NV 270 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRSAVL 289 ++ L E G+ ++ TE+ ++V L S + + + + Sbjct: 271 NSTDQCADAL-EEMGVKIKGRTESGKRQVNDDLLQSLSDDGNELAAIIQEAKKLGKWNKT 329 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 + + +S+ R + L A RT R S P Q LP Sbjct: 330 WVAKFLSVRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASDWI-------------- 374 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 VR C +A G+ + D E RVLA ++G+Q ++AF+TG DL+ Sbjct: 375 --------------VRRCFVADPGQVMASVDYQTQELRVLAALSGDQTMIEAFKTGADLH 420 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T ++ R +GK+ Y GGA + +A ++ T ++ Sbjct: 421 QMTA---------DASQVVRKVGKMANFLTVYGGGA---KTLAEQAHIDFPTAKRVLDG- 467 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + A + +I A R SR N + Q+ Sbjct: 468 -----FAKTYPGVARYSKKLAMEAGRNGYIVNAMGR---RLPVDSSRTYSALNYMIQSSS 519 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 + + I + P + + + LP+G++ Sbjct: 520 RDVTCRALIRLHEAGFTPYLRLPIHDEVVA-SLPAGQA 556 >gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] Length = 917 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 96/538 (17%), Positives = 172/538 (31%), Gaps = 137/538 (25%) Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY------LDQTINDRGYCVDVALA 204 E + + V + + + LE + SK + + G VD Sbjct: 481 AEKAQQQILRARAVVDLAAALDEELEKIESKPLLEEMELPLLRVLGVMEATGIAVDTDHL 540 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264 +L+ +R + + G + ++L+ LF + GL T+T + Sbjct: 541 ESLHS-DFSDRIRAAEAAAFEEIGEQINLGSPKQLQVILFEKLGLPKTKKTKTGYTTDAA 599 Query: 265 SNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 + + L + F + R A + + L++A+ SDGR+ T Sbjct: 600 ALEALYEKEPHPFLQYLLEHRDATRLKVTVEGLLKAVASDGRIHSTF------------- 646 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-K 375 +Q + ++DP+ I +R +A EG Sbjct: 647 ------------------NQTVAATGRLSSTDPNLQNIPVRTEAGRQIRHAFVAGEGYET 688 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435 L+ AD + IE R++A ++ ++ ++AF TGEDL+ A++F V +VT D R K M Sbjct: 689 LMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVGAKAFGVPIDEVTPDMRRRVKAM 748 Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495 L Y A +A+ ++ + Sbjct: 749 SYGLAYGLSAF---GLAAQLKISRDEA--------------------------------- 772 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKD 554 K +R + + L + N I +RR +P + Sbjct: 773 -----------KDQMEAYFARFGGVRDYLQDVVTEATRNEYTETIFGRRRYLPDL----- 816 Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614 T+T ++ RE L I Q + DI+ M Sbjct: 817 ---------------------------TSTNRMRRESAERMALNAPI-QGSAADIIKVAM 848 Query: 615 MNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665 +N K ++L VHDE+V E + L M + +PL+ Sbjct: 849 INLDKQIRAAGLTSRMLLQVHDELVLEVAAGERDELEKLVRDTMGTAAE--LSVPLEV 904 >gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328] gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328] Length = 875 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 90/565 (15%), Positives = 185/565 (32%), Gaps = 68/565 (12%) Query: 35 FGFDDHPV-------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNL 86 + D+ PV +++ + + + KE E+ D+ F+ + Sbjct: 328 YYVDNEPVIFAIYTDKVY-ITRNVELVESFKEEFESKDINK----LSFDIKPCIYHLMRY 382 Query: 87 DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 I I +V+ PS + K+ + +++ + +T + Sbjct: 383 GIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + N+ + +F + E + E L + + G CV Sbjct: 443 KEIDNYVVKYMMFTNKL-YEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 + ++ + E +++ +E L G + ++L LF + L + +T T Q Sbjct: 502 VEMGELFEDEIKSIEKSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + ++ +V+ + DG++ Sbjct: 561 VLEALSGRHEIIDYILRYRTIT-KLKTTYIDGMVDLIKKDGKI----------------- 602 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 H Q I +++P+ I +R + SEG L Sbjct: 603 --------------HTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNML 648 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RVLA +A ++ L AF+ G D++ T + F V +VT QR+ K + Sbjct: 649 LDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVN 708 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y G + + + E + D + E+ E Sbjct: 709 FGIVYGIGDYSLS---KDLHITRKEAKEYI------ENYLDTYKGIKQYMEDIVAIGKEK 759 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R ++ + S+ + + + T G A K V ++ Sbjct: 760 GYVETIMNR-RRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEK 818 Query: 557 NLI-LMLPSGRSLVYRDVGNNRSYL 580 L+L L+ + R + Sbjct: 819 LKAKLILQVHDELIVDCPKDEREKV 843 >gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] Length = 933 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 114/671 (16%), Positives = 185/671 (27%), Gaps = 150/671 (22%) Query: 29 CVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLD 87 V A D D + + A L + D VAH+ A Sbjct: 366 EVTGLALAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAHDVK---GPSHALLARG 422 Query: 88 IPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 + + LA P + A++ +++ + L Sbjct: 423 WTLAGVVLDTALAAYLCRPDQRSYDLADLAVRHLKRELRAEGSTGGADADVDEQLTLDGS 482 Query: 146 NKPNHREAWRLFGE---------YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196 + P + E G + E L E L + G Sbjct: 483 DGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGTRLLHEVELPLVAVLAAQERVG 542 Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256 VD L L + + + G + ++L+T LF + + T+ Sbjct: 543 IAVDDELLADLEARFAERVAQAQAQAYEVI-GTEINLGSPKQLQTVLFEQLDMPKTKRTK 601 Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313 T + L + F + R A + L +++ DGR+ T Sbjct: 602 TGYTTDADALAALFVKTEHPFLAHLLEHRDASRLRQTVEGLRKSVADDGRIHTT------ 655 Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCV 368 Q+I ++DP+ I +R Sbjct: 656 -------------------------YQQMIAATGRLSSTDPNLQNIPIRTEEGRRIREAF 690 Query: 369 I------ASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 + A +G + L+ AD + IE R++A ++G++ + AF +GEDL+ +R F VAP Sbjct: 691 VVGPDAGAGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVGSRVFGVAP 750 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 VT + RA K M L Y A + Sbjct: 751 VDVTPEMRAKIKAMSYGLAYGLSAFGLSNQLKIS-------------------------- 784 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 E K + R + + LH E+ G Sbjct: 785 ---------------------TEEAKDLMDEYFQRFGGVRDYLHGVVEEARRTGWTETIM 823 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 RR LP L + RQ RE L I Sbjct: 824 GRRRY---------------LP---------------DLASDNRQ-RREMAERMALNAPI 852 Query: 602 VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN 654 Q + DI+ M++ ++L VHDE+V E + L M Sbjct: 853 -QGSAADIIKVAMLDLDAGLREAGLRSRLLLQVHDELVLEVARGEREPLEELVRATMAGA 911 Query: 655 PSWAKGLPLKA 665 A +PL Sbjct: 912 ADLA--VPLDV 920 >gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 907 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 113/629 (17%), Positives = 188/629 (29%), Gaps = 153/629 (24%) Query: 54 PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 P L EA L + V HN+ V++ + LA Sbjct: 378 PSQLDEADENAFATWLADPAKPKVLHNAK---GVMRVFAEHGWTVEGVSMDTALAAYLVK 434 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165 P +AL L + L T + EA L + + + Sbjct: 435 PGRRSFALDALSL--------EYLGRELEPAATADGQLAFGADEGAEADALMVQ-ARAIL 485 Query: 166 TVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 + +RL+ + E L + G D A + Q+ + Sbjct: 486 DLGEAFGERLKEVGSADLLRDMELPTSALLARLERHGIAADKAHLEAMEQMFAGAVQQAV 545 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA---IQV 276 +E + G + ++L+ LF E GL T+T + L Q + V Sbjct: 546 KEAHA-AAGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTDNELPV 604 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R R + + L++ + +DGR+ T Sbjct: 605 IMLRHREQAKLRVTVEGLIKTIAADGRIHTT----------------------------- 635 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLA 390 +Q + ++DP+ I +R + EG + L+ AD + IE RV+A Sbjct: 636 --FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 693 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ ++ ++AF +GEDL+ T ++ F V + V + R K M L Y A + Sbjct: 694 HLSEDEGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 753 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 ++ L+ T Sbjct: 754 ---QLNIDAGEARALMDTYF---------------------------------------- 770 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + + L +A ++ G RR LP Sbjct: 771 ----ERFGGVRDYLRRAVDEARATGYTETLFGRRRY---------------LP------- 804 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDI 624 LN+ RQ RE L I Q + DI+ M+N +A + Sbjct: 805 --------DLNSDNRQ-RRETAERMALNAPI-QGTAADIVKIAMLNVDRALQEANLKSRM 854 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHL-MT 652 +L VHDEIV E + L M Sbjct: 855 LLQVHDEIVLEIAPGERAKTEELVRREMA 883 >gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] Length = 912 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 148/399 (37%), Gaps = 45/399 (11%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E L + + +G +DV + +D E K+++ + G + + Sbjct: 510 LMKNEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLKIEKAIYEEA-GEEFNINSPK 568 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L LF++ L T+T + + L + Sbjct: 569 QLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNI--------------------- 607 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 R L + ++ P SR H +QI T +SDP+ Sbjct: 608 ------ARLLLDYRKLNKLKTTYVDTLPLLVD-ENSRIHTTFNQIGTATGRLSSSDPNLQ 660 Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R +A GK L+ D + +E RVL M+ ++ ++A+ +DL+ T Sbjct: 661 NIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLT 720 Query: 413 YARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 R FN++ ++ V+++QR I K++ ++ Y +A + + + +K Sbjct: 721 ARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPF---GLAKELKIPVKDASEYIK--KY 775 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 E++ +F R + E EH G K+ S+ + ++ + T Sbjct: 776 FEQYPKVTSFEREVIEFGEEHGYVKTLFGR-----KRYISGIDSKNKTIKSQAERMAVNT 830 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 + G A K+ V + + KDK + L+L L++ Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQVHDELIF 869 >gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] Length = 871 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 74/445 (16%), Positives = 150/445 (33%), Gaps = 74/445 (16%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L + + G ++ + + ++ +L++E+ G + ++ Sbjct: 472 TDIEMPLVFTLYDMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYE-AAGEEFNINSPKQ 530 Query: 239 LKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 L LF + GL T+T T VL P Q+ R + + L Sbjct: 531 LGVILFDKMGLKGGKKTKTGYSTAADVLDKLAPDYPVVAQILEYRQLTKLKSTYA-DGLS 589 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 ++ DG R H + +Q IT +++P+ Sbjct: 590 NYISGDG-------------------------------RIHGKFNQTITATGRISSTEPN 618 Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I + +R I +G + AD + IE RVLA +G++ + A++ +D++ Sbjct: 619 LQNIPVRMELGRLIRKVFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHR 678 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T ++ F+V +VT QR K + + Y + + + A + Sbjct: 679 ITASQVFHVPFGEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAAKYID--- 732 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 ++ + ++ HA E ++ T R + S + + + Sbjct: 733 ---DYFKTYPGIKLFLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQ-RSFGERVAMN 788 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + G A K + + K+K+ L+L L+ Sbjct: 789 SPIQGTAADIIKIAMIGVNRRLKEKHMRSRLVLQVHDELL-------------------- 828 Query: 590 EYTYGGKLTENIVQAVSRDILAEGM 614 YG +L E V+A+ +D + Sbjct: 829 IEAYGPELEE--VKAILKDEMEHAA 851 >gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pyogenes M49 591] Length = 418 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 90/511 (17%), Positives = 164/511 (32%), Gaps = 127/511 (24%) Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 ++L+ + E L + + G V+ A + + V L QE+ + G Sbjct: 8 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMA-GQEF 66 Query: 232 SSRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + ++L + LF + L LE T+T + ++L P A V Sbjct: 67 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAK----------- 115 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L + ++ L + H Q +T Sbjct: 116 -----------------ILDYRQITKLQSTYVIGLQDYILA-DGKIHTRYVQDLTQTGRL 157 Query: 350 ITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + DP+ I +R S E L+ +D + IE RVLA ++G++ + AF Sbjct: 158 SSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFN 217 Query: 404 TGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 G D++ +T R F + A VT + R K + + Y +++ G+ Sbjct: 218 EGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDF---GLSNNLGITRKQA 274 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 + T + + + EN A + ++ Sbjct: 275 KSYIDT------YFERYPGIKAYMENVVREAKDKGYV----------------------- 305 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 + ++RR++P + + R+ R R+ +N+ Sbjct: 306 --------------ETLFKRRRELPDI--------------NSRNFNVRSF-AERTAINS 336 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET 636 +Q + DIL M+N KA +L VHDEIV E Sbjct: 337 P------------------IQGSAADILKISMINLDKALQAGGFRAKCLLQVHDEIVLEV 378 Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 P+ + L M + A +PL + Sbjct: 379 PNDELTAIKKLVKDTMEAAVDLA--VPLCVD 407 >gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] Length = 896 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 98/679 (14%), Positives = 210/679 (30%), Gaps = 170/679 (25%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54 D ET + +D+ K ++ F+F + H+ Sbjct: 334 SFDTET-TSLDVRKA---------KIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLECAR 383 Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVG 113 + +++ ++ V HN ++ +LK F+ + + +++LA + Sbjct: 384 ECIEQIFQSQYVI--GHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQSDTLCNLDF 441 Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 K + +M K+++ K E + ++ EY D +++ Sbjct: 442 LMKKYFNHEMIHYKDIVG---KNENFSNILIQH----------ACEYASEDAAACYQLYF 488 Query: 174 RLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 +L L + E + G +D+ LN + ++ +E+ Sbjct: 489 KLRGLMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLGLNAETREKLHQISEEIFV 548 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM 281 L + ++L + LF + L T++ VL+S P ++ R Sbjct: 549 LA-NKRFNLNSPQQLASILFDDLKLEASKKTKSGYSTSELVLNSLYDSHPIIPKILEYR- 606 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + + L+E SD R + Q Sbjct: 607 ESFKLYSTYIEPLIEHAKSDLE-----------------------------HRIYTSFMQ 637 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T + +P+ I +R IA E L+ D + IE R+LA + ++ Sbjct: 638 TGTSTGRLSSKNPNLQNIPVKTLEGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQDK 697 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 + AF D+++ T + F ++ +++RA+ K + L Y G Sbjct: 698 AMIDAFLQDADIHLETAKKIFG---EEMAQEKRAVAKSINFGLIY--------------G 740 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + +K N +++A+ + + + Sbjct: 741 MGPKKLSETLKIN-----FQEAKTYIQ-------------------------NYFTSFPM 770 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + E + + K ++ R R+ + K + Sbjct: 771 IKNFLKEQEEFILEN-GYSKTLLGRMRKFDFEGVQEYQKAAFL----------------- 812 Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVC 634 R +N I Q + DI+ M + + ++L VHDE++ Sbjct: 813 REGINA------------------IFQGSAADIIKMAMNKIMHSSLESKLLLQVHDELIF 854 Query: 635 ETP-DTDEFNASMLYHLMT 652 E P + A + +M Sbjct: 855 EAPKEIASKEAKKIALIME 873 >gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] Length = 878 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 94/485 (19%), Positives = 163/485 (33%), Gaps = 118/485 (24%) Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251 + G +DV + E L + L G + ++L LF + GL Sbjct: 491 MERVGAQLDVDALAAMGSATRGEIDSLRAHIHELA-GEEFNVDSPKQLGVILFDKLGLPH 549 Query: 252 EDLTETTCQRVLSSNKKL---TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308 T T ++ KKL P A +V R ++ + ++ L DGR Sbjct: 550 GKKTRTGYSTNAATLKKLQSIHPIADEVLRYR-ELAKMSSTYIDALPRMRADDGR----- 603 Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDC 363 H +Q +T +SDP+ I Sbjct: 604 --------------------------VHTHFNQTVTTTGRLSSSDPNLQNIPVRTDFGRR 637 Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R C + EG V AD + IE R+LA ++G++ + AF +G D + T AR F+V Sbjct: 638 IRECFVPLHEGDVFVSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVD 697 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT R+ K + + Y A +A + + ++ + +A Sbjct: 698 EVTPQLRSRAKAVNFGIVYGQQAF---GLAQSLDIGFKEAQDMID------RYFEAYPGV 748 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 R + E A + + T R Sbjct: 749 RSYLDKTVEDAKQTGYAVTMFGR------------------------------------- 771 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 +R +P + M R+ V R G R+ +N + + KL N V Sbjct: 772 KRHIPELKM--------------RNAVQRGFGE-RTAMNHPMQGSAADII---KLAMNEV 813 Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL 661 Q R ++ +G + ++L VHDE+ P + E + M+ +M++ + Sbjct: 814 Q---RRLIEDGFES------QLMLQVHDELDLSVPADELERLSDMVREVMSTIVE--LKV 862 Query: 662 PLKAE 666 PL + Sbjct: 863 PLLVD 867 >gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] Length = 889 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 106/604 (17%), Positives = 204/604 (33%), Gaps = 89/604 (14%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL----KEALENTD 65 D + ++ F+F D H + + L +L N Sbjct: 328 DTETTNLD--VLCAKIVGFSFSLDGINAYYAPIAHSYLGVPEQISKELALEFINSLFNAK 385 Query: 66 VTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARS--NGLPSALKAVGEALKLSSQK 122 V I HN ++ +L FN H +++LA + +P L + + Sbjct: 386 VVI-GHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWLYQSDMPCNLDDL--MARYFKHT 442 Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181 M K++I KGE L N Y D ++F ++ L K Sbjct: 443 MIAFKDIIK---KGENFSQLPIEN----------AFTYACEDAAACYQLFFKINSLLPKS 489 Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E + G +++ L + + L QE+ +L + Sbjct: 490 LQEVANNVEFPFIQCLVNMELSGTKINIKYFKNLKSEMTEKLQALSQEIYTLA-NKRFNL 548 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++L LF E L T++ VL+S + P +V R + Sbjct: 549 NSPQQLSIVLFEELNLQSGKKTKSGLSTNSSVLNSLRDSHPIIPKVLEYR-ELFKLYSTY 607 Query: 291 LNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L+E + D ++ + G + TGR S QN+P ++ Sbjct: 608 IEPLIELASQDPAHKVYTSFMQTG-TSTGRLSSKNPNLQNIPVKTQQ------------- 653 Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 +R IA EG L+ D + IE R+LA + + ++AF D+ Sbjct: 654 ------------GRRIREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSAMIEAFHKEADI 701 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 ++ T + F ++ +++R++ K + L Y GA +K++ T +N ++ Sbjct: 702 HLETAKKIFG---EELAQEKRSVAKSINFGLIYGMGA---RKLSETLQINHQEAKSYIQ- 754 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + + + +NF + +E +++ + T R++K + ++ + Sbjct: 755 -NYFQSFPTVKNFLKEQEEFI----LKNGYSLTLLGRMRKFSFENIQEFQKV--AFLREG 807 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 I G A K + + K + L L L++ N Q+ Sbjct: 808 INAIFQGSAADIIKLAMIQITQEKLESKLL---LQMHDELIFEAPKNIAETEAKKIAQIM 864 Query: 589 REYT 592 T Sbjct: 865 ESIT 868 >gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] Length = 838 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 88/527 (16%), Positives = 169/527 (32%), Gaps = 135/527 (25%) Query: 168 TREIFKRL-EPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLNQIVDVERTK 217 E++++L + L KE E Y D + + G V++ TL + + +E K Sbjct: 420 MFELYEKLNKELKEKELENLYFDIEMPLIEVLFDMEETGIKVNIEKLETLTKHISMELDK 479 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277 + +++ ++ G + ++L L+ GL + + ++L Q Sbjct: 480 IKEKIYTIA-GTEFNINSPKQLAEVLYDRLGLKTRKRGKKARSTEMEVLEELAIQHELP- 537 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ--NLPRPSRS 335 + + ++ +G + P + P R Sbjct: 538 ---------------------------HEVINYRTLNKL--LTGYLIPLRDYINPETKRI 568 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H + Q + ++S+P+ I ++ +R I G + AD + IE R+LA Sbjct: 569 HTKWSQTVAGTGRIVSSEPNLQNIPVKGEWAEFLREVFIPENGYMFLSADYSQIELRLLA 628 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 M+ + +KAF G+D++ T + F++ VT + R I K + + Y + Sbjct: 629 HMSEDPALIKAFLDGKDIHTATASEIFSIPENAVTDEHRRIAKTVNFGISYGISPFGLSE 688 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 S +E AE +P + FI ++ Sbjct: 689 -------------------SIKIPYEKAEELIELYFLRYP---MVRKFIEETI-----SF 721 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 QK+ V L+ + R +P + + N L + S R Sbjct: 722 AQKNGYVRTLF-------------------GRIRPLPEI----NSPNQFLRMQSERM--- 755 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624 VQ + DI+ M+ K I Sbjct: 756 --------------------------AVNARVQGTAADIIKIAMIRIYNRLKKEKLNAKI 789 Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671 +L +HDEIV E S + ++ +PL+ + Sbjct: 790 ILQIHDEIVLEVEQKVIEKVSEIVQ--NEMKDFSLSVPLEVNVFSGN 834 >gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] Length = 950 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 73/498 (14%), Positives = 161/498 (32%), Gaps = 70/498 (14%) Query: 33 FAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 AFG D +D ++ LE+ +++ + +K Sbjct: 392 VAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKY----MKHV 447 Query: 84 F-NLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 F N+ I + ++L + A ++ +EL+ + K + Sbjct: 448 FANVGINLAGVSDDVMLESYVLEAHRSHTIEKLAANWLKYELRGEEELLGKGAKKLSFSQ 507 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQ 190 + + E+ V + + + + E L + Sbjct: 508 V----------SVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVLF 557 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G +D L ++ + +L+++ + G ++L LF + G+ Sbjct: 558 KMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVA-GENFKLSSPKQLGEILFDKMGVV 616 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 LE + +S N + + + ++ A L++ Sbjct: 617 LEGAKPK---KTISGNYSTSEEVLSELAENYPLAKIA--------------------LEY 653 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 ++ P P+ R H +Q + +++P+ I VR Sbjct: 654 RTITKLVTTYTEKLPKMVDPKDGRVHTTFEQAVAVTGRLSSTNPNLQNIPIRTEEGRKVR 713 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 I++ G KL+ AD + IE R++A ++ ++ ++AF+ ED++ T A F +VT Sbjct: 714 EAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVT 773 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R I KV+ L Y +A G+ + + + A + ++ Sbjct: 774 PNDRRIAKVINFGLMYGMSPF---GLAKNLGIGRDEAKNYINKFFAR--FPGVHDYMERT 828 Query: 486 QENHPEHAIEDLFIGTAC 503 + + G Sbjct: 829 RALADRQGYVETTFGRRL 846 >gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 899 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 104/642 (16%), Positives = 185/642 (28%), Gaps = 160/642 (24%) Query: 44 LWDCV----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99 + D D + L + L + D V ++ L+ I + + L Sbjct: 361 VVDMTLLLAQDE---EALDQLLSDPDHPKVVADAKGSWHALR---GRGIGLDGVVADPAL 414 Query: 100 ARSNGLP--SALKAVGEA---LKLSSQKMEEGKELIARFCKGETH---ECLYDRNKPNHR 151 A P + A L L + + + + +T E L D P R Sbjct: 415 AAYLCRPEQRSYDVATLAERWLGLDLESLAQAE--------PQTAFDLESLADGTPP--R 464 Query: 152 EAWRLFGEYCKGDVTVT-----REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 + + E + + D G VD Sbjct: 465 TLLASARRAACLLPLQEVLGEQMAQRGAVTLYTELEMPVAACLAQMEDAGIAVD-DSVLA 523 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 ++ R E G + ++L+ +F E + T+ + Sbjct: 524 AREVELDARVTHAAEAAFAAAGHELNLSSPKQLQAVIFDELKMPKTRRTKRGYTTDAEAL 583 Query: 267 KKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 L + F + R A+ + L +A+ +DGR+ T Sbjct: 584 AALYAKTGHPFLEHLLEHRDAIKLRQTVEGLRKAVLADGRIHTT---------------- 627 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKK-LV 377 Q + ++DP+ I + +R +G++ L+ Sbjct: 628 ---------------FQQTVAATGRLSSTDPNLQNIPARTEEGMRIREAFTVGQGQECLL 672 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G+Q + AF +GEDL+ A + A VT +QR+ K M Sbjct: 673 TADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRYVAAMVHGIDVADVTAEQRSHVKAMSY 732 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 L Y +A G++ + L Sbjct: 733 GLAYGLSTY---GLARQLGIDNAEASALRD------------------------------ 759 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 +R + + L Q +G RR Sbjct: 760 --------------AYFARFGAVHDYLESVVAQARRDGWTQTMFGRRRY----------- 794 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 LP L + RQ RE L I Q + DI+ + M++ Sbjct: 795 ----LP---------------DLTSDNRQ-RREMAERAALNAPI-QGSAADIVKKAMIDV 833 Query: 618 TKAGY------DIVLTVHDEIVCE-TPDTDEFNASMLYHLMT 652 A ++L +HDE++ E P E ++ M+ Sbjct: 834 ADALAESALASRVLLQIHDELLLEIAPGEAEAVEELVRARMS 875 >gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] Length = 875 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 89/565 (15%), Positives = 184/565 (32%), Gaps = 68/565 (12%) Query: 35 FGFDDHPV-------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNL 86 + D+ PV +++ + + + KE E+ D+ F+ + Sbjct: 328 YYVDNEPVIFAIYTDKVY-ITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRY 382 Query: 87 DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 I I +V+ PS + K+ + +++ + +T + Sbjct: 383 GIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + N+ + +F + E + E L + + G CV Sbjct: 443 KEIDNYVVKYMMFTNKL-YEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 + ++ + E ++ +E L G + ++L LF + L + +T T Q Sbjct: 502 VEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + ++ +V+ + DG++ Sbjct: 561 VLEALSGRHEIIDYILRYRTIT-KLKTTYIDGMVDLIKEDGKI----------------- 602 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 H Q I +++P+ I +R + SEG L Sbjct: 603 --------------HTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGNML 648 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RVLA +A ++ + AF+ G D++ T + F V +VT QR+ K + Sbjct: 649 LDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVN 708 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y G + + + E + D + E+ E Sbjct: 709 FGIVYGIGDYSLS---KDLHITRKEAKEYI------ENYLDTYKGIKQYMEDIVAIGKEK 759 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R ++ + S+ + + + T G A K V ++ Sbjct: 760 GYVETIMNR-RRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEK 818 Query: 557 NLI-LMLPSGRSLVYRDVGNNRSYL 580 L+L L+ + R + Sbjct: 819 LKAKLILQVHDELIVDCPKDEREKV 843 >gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21] gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21] Length = 811 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 178/549 (32%), Gaps = 80/549 (14%) Query: 9 ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65 E S D G + ED L + + D ++ +L+EAL Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNS-----DTIYATSNVSLLQEALFKKA 366 Query: 66 VTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-M 123 ++ F+R+ VL FN+D+P LA+ + V +L + + Sbjct: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEP--AFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424 Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EP 177 + + + K R P + K V I ++L E Sbjct: 425 DTDDAVYGKGAK---------RAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L EQ L + + RG V + + L QE+ L G + + Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA-GQEFNINSPK 534 Query: 238 KLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295 +L LF GL +E T+T + ++L P + V Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK----------------- 577 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 L++ ++ L + H Q +T +SDP+ Sbjct: 578 -----------ILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPN 625 Query: 356 PLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 I +R + SE L+ +D + IE RVLA ++ ++ + AF+ G D++ Sbjct: 626 LQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIH 685 Query: 410 VTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 +T R F + P VT + R K + + Y G+ + T Sbjct: 686 TSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSH---NLGIPRKLAKQYIDT 742 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 E + +N E A + ++ T R +++ +SR + + Sbjct: 743 --YFERYPGIKN----YMETVVREAKDKGYVETLFHR-RRSLPDINSRNFNIRQFAERTA 795 Query: 529 EQTIENGKA 537 + G A Sbjct: 796 INSPIQGSA 804 >gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] Length = 913 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 95/515 (18%), Positives = 155/515 (30%), Gaps = 129/515 (25%) Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 L + E + + D G VD A+ +D R E Sbjct: 500 QMADRDALGLFADLEMPVAATLTVMEDVGIAVDDAVLAVRETELDA-RVTHAAEGAYAAA 558 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287 G + ++L+ LF E + T+T + L + F + R A Sbjct: 559 GRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTDAEALAGLYAKTSHPFLENLLEHRDA 618 Query: 288 VL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + + L +A+ SDGR+ T Q I Sbjct: 619 IKLRQTVEGLRKAIQSDGRIHTT-------------------------------FQQTIA 647 Query: 345 HLPTSITSDPDPLQIISD-----CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I + +R EG + L+ AD + IE R++A ++G+Q Sbjct: 648 ATGRLSSTDPNLQNIPARNEEGMRIRQAFTVGEGYECLMTADYSQIEMRIMAHLSGDQAL 707 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF +GEDL+ A + VT QR+ K M L Y +A G+ Sbjct: 708 IEAFRSGEDLHRYVAALVHGIDVDDVTAQQRSHVKAMSYGLAYGLSTF---GLARQLGIG 764 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 A L +R Sbjct: 765 NAEAADLRN--------------------------------------------AYFARFG 780 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + L EQ +G RR LP Sbjct: 781 RVHDYLESVVEQARRDGYTQTMFGRRRY---------------LP--------------- 810 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 L + RQ RE L I Q + DI+ + M++ +A ++L +HDE+ Sbjct: 811 DLTSDNRQ-RREMAERAALNAPI-QGSAADIVKKAMIDVDRALSEQGLSSRVLLQIHDEL 868 Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E + E ++L M +PL Sbjct: 869 LVEVASAEVEAVETLLKEQMGGAAE--LSVPLDVA 901 >gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] Length = 885 Score = 220 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 83/478 (17%), Positives = 139/478 (29%), Gaps = 127/478 (26%) Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247 + + G VD+ T+ + ++ ++L+ LF Sbjct: 491 ILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVLFETL 550 Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA---VLKLNTLVEAMNSDGRL 304 GL +T + L F N + A R L L++A+ DGR+ Sbjct: 551 GLPKTKKIKTGYSTAAKEIETLAANHPHEFLNHLLAHREYQKMKTTLEGLIKAVGDDGRI 610 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 T Q +T ++DP+ I Sbjct: 611 HTT-------------------------------FQQTMTSTGRLSSTDPNLQNIPIRTP 639 Query: 361 -SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 +RS L+ AD + IE RV+A ++ + + A+ GEDL+ A+ F+ Sbjct: 640 AGKKIRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNGEDLHNYVGAKVFD 699 Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 V P+ VT + R K + L Y A + Sbjct: 700 VPPSGVTPELRRKVKALSYGLVYGLSAFGLSQQ--------------------------- 732 Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KA 537 + K+ R + + L Q ++G A Sbjct: 733 --------------------LNIPAGEAKQIMENYFHRFGGVKHYLDTVVTQARKDGYTA 772 Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597 + +RR +P + T+T + TRE L Sbjct: 773 TLFDRRRYLPEL--------------------------------TSTNRATRENAERAAL 800 Query: 598 TENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 I Q + DI+ M+ T A ++L VHDE+V E + L Sbjct: 801 NAPI-QGTAADIIKIAMLRIHHELKKTNAKSRVLLQVHDELVVEIAPGELTTVKKLIE 857 >gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] Length = 886 Score = 220 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 90/511 (17%), Positives = 173/511 (33%), Gaps = 134/511 (26%) Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G V+ + L V+ +L+ ++ G + ++L Sbjct: 488 EIPTARVLAKMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYEQA-GERFNLNSPKQLGH 546 Query: 242 WLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 LF + GL + T+T VL K +P ++ + R A + + L++ + Sbjct: 547 ILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTY-VKGLLDVI 605 Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 DG R H Q +T + DP+ Sbjct: 606 QPDG-------------------------------RVHTRYLQTLTATGRLSSVDPNLQN 634 Query: 359 II-----SDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R + SE + D + +E RVLA ++G+ +AF+TG D++ T Sbjct: 635 IPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHT 694 Query: 413 YARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 + F++ P QVT R K + + Y ++ G++ Sbjct: 695 AMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDY---GLSKNLGISRK----------- 740 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 A+ F E +P ++ + +++A ++ Sbjct: 741 -----RAKEFIDNYFEQYP----------------------------QIKDYMNKAVQEA 767 Query: 532 IENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A I +RR +P ++ KK + R+ R+ +N+ Sbjct: 768 RDKGYAETIMHRRRYLPDIHAKKY---------TVRAFA------ERTAINSP------- 805 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+N K +V+ VHDE++ + P + Sbjct: 806 -----------IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETI 854 Query: 645 SMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673 + +M S +PL A+ G+ Y Sbjct: 855 KKIVPEVMQSAVK--LDVPLIADSGWGHNWY 883 >gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] Length = 900 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 93/537 (17%), Positives = 173/537 (32%), Gaps = 142/537 (26%) Query: 155 RLFGEYCKGDVTVTREIFK----RLEPLS------SKEQELWYLDQTINDRGYCVDVALA 204 +L + C + + ++K +L+ + E L + + G +D + Sbjct: 470 QLQRQLCAQKIQLIDALWKDSEPKLKEMEIVSLFYDVEMPLAAVLYKMEKEGIRID---S 526 Query: 205 HTLNQIVDVERTKLDQELESL--TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 TL+ I + +LD +++ G + ++L LF + GL +T V Sbjct: 527 QTLDDIARQTQARLDALTDAIYAAAGETFNINSPKQLGEVLFDKLGLPASGKKRSTSADV 586 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L + P + R + + L + ++ DGR Sbjct: 587 LEKLLGVHPIIADLLEFR-KYQKLYSTYAEGLKKYIHPDGR------------------- 626 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 H +Q T +++P+ I S VR + SEG LV Sbjct: 627 ------------IHTIYNQCATQTGRLSSTEPNLQNISVRDEESREVRKAFLPSEGNVLV 674 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 +D + IE R+LA MA EQ L AF D++ T + F + QV R K + Sbjct: 675 ASDYSQIELRMLAHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKAVNF 734 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + ++ ++ Sbjct: 735 GIVYGISDFGLSQ---QLDISRAQAKEFIE------------------------------ 761 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKN 556 + Q + +S+ + Q E+G A + +RR+VP ++ DKN Sbjct: 762 -----------RYLQSYPNISK---YMDQVISFCQEHGYTATMLGRRREVPEIH---DKN 804 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 + R+ +N +Q + D++ M+ Sbjct: 805 YMTREF------------GKRAAMNAP------------------IQGSAADLIKLAMIR 834 Query: 617 ATKA------GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 KA ++L VHDE++ + P + +++ M +PL AE Sbjct: 835 IDKAISEKGLQSKMILQVHDELIFDALPSELDALCAIIQEGMEHAME--LKVPLVAE 889 >gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] Length = 924 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 93/533 (17%), Positives = 159/533 (29%), Gaps = 79/533 (14%) Query: 62 ENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + V V HN F+ VL + P+ T+VL+ G Sbjct: 398 RDPGVLKVGHNLKFDLHVLANAGLSDVAPVD---DTMVLSYVLD--------GTLHGHGM 446 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 ++ G L R E + Y D VT ++ L Sbjct: 447 DEL-AGLHLGRRTITFEEVCGKGKGQITFDQVPLDKAVAYAAEDADVTLRLYLLLRDRLL 505 Query: 181 KEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 KE + + + G VD L+ L+ ++ +L G Sbjct: 506 KEHMVRVHETLDRPMVRILTDMEAAGVRVDALRLKALSGDFAKRMGDLEDQIHALA-GHA 564 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKL-TPQAIQVFNNRMRAS 284 + ++L LF E L + T +VL +V + R A Sbjct: 565 FNVASPKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQVLDQLAAEGHDLPARVLDWRQYAK 624 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + LV ++ R R H +T Sbjct: 625 LKGTYT-DALVAEIDE------------------------------RTGRVHTTYGLTVT 653 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 ++DP+ I +R IA+ G L+ AD + IE R++A +AG Sbjct: 654 ATGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQIELRLVAHVAGITALR 713 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G+D++ T ++ F V + R K + + Y A +A G+ Sbjct: 714 QAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISA---HGLAQQLGVGR 770 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER--VKKAWRQKHSRV 517 A + A R E E A ++ T R + K+ Sbjct: 771 PEAAAFITAYFARFPE------IRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAA 824 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 QA I+ G A I ++ +++ ++L L++ Sbjct: 825 RAFAE--RQAINAPIQGGAADIIKRAMIALPPALEQAGLATRMLLQVHDELIF 875 >gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032] gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032] Length = 899 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 89/520 (17%), Positives = 162/520 (31%), Gaps = 129/520 (24%) Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D ++R+ + ++ E L + + G D L E Q Sbjct: 480 AIDAELSRDGEQSARLMAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQA 539 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281 ++ G + ++L+ LF E L +T + + L Q + + Sbjct: 540 AYAVI-GREFNLGSPKQLQEILFGELNLPKTKKIKTGYTTDADALQWLYAQTEHPLLHHL 598 Query: 282 RASRSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R ++ L+++++ DGR+ T Sbjct: 599 LRHRDVARLKSTVDGLLKSVSDDGRIHTT------------------------------- 627 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWM 392 +Q + +++P+ I +R + EG + L+ AD + IE R++A + Sbjct: 628 FNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHL 687 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 +G++ ++AF +G D + T + F VA A+VT DQR K M L Y A + Sbjct: 688 SGDEALIEAFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNYGLAYGLSAFGLSQ-- 745 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 G+ L++ A Sbjct: 746 -QLGITAEEARGLMEVYFAG---------------------------------------- 764 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 + + L + + ++G RR LP Sbjct: 765 ----FGGVRDYLQEVVARARQDGYTSTILGRRRY---------------LP--------- 796 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVL 626 L + RQ RE L I Q + DI+ M++ A ++L Sbjct: 797 ------DLVSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLHVDTALRDAGLRSRMLL 848 Query: 627 TVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 VHDE+V E + L M ++ +PL+ Sbjct: 849 QVHDELVFEVAPGERATLEELVRREMGG--AYPLSVPLEV 886 >gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 885 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 93/545 (17%), Positives = 190/545 (34%), Gaps = 54/545 (9%) Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85 EDV I A D V+ ++ + LK+ +E+ V + ++ + +L + Sbjct: 335 EDVKPIYLAVKVKDSEVKFI--SYEEIDFDFLKKIMEDEKVEKLGYSLKEDIIIL---MD 389 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLY 143 L I I + + +A + + ++ K + ++L+ + K +T+ L Sbjct: 390 LGIDIKNYSHDVEIAEYLLNSTQSDYDINKISMAYFKNGYLDLEDLLGKGAKKKTYADL- 448 Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVA 202 D++ A+ L Y D+ + + + L E L + ++ G D A Sbjct: 449 DKDDLFKYFAFVLNTIYRLEDLQKEKIDEEEMTSLYQDMELPLVEVLASMEYVGINTDEA 508 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 + +++ + + L++E+ G + ++L LF + + T+T Sbjct: 509 VLDEIDKQIIEKLKTLEEEIYDEA-GEKFNINSPKQLGVILFDKMDFPVIKKTKTGYSTS 567 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 + KL E ++ L + S+ Sbjct: 568 ADVLE----------------------KLRGKGEIIDK------ILDYRKFSKLKSTYID 599 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 + R H Q +T ++DP+ I +R +ASEG LV Sbjct: 600 GLKAVINKKTKRIHSRFMQTVTATGRISSTDPNLQNIPIKTEEGRLIRKAFLASEGGVLV 659 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA ++ ++ L AF+ G D++ T + F+V +V QR K + Sbjct: 660 DADYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDRQRYEAKAVNF 719 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + + + + ++ + Sbjct: 720 GIVYGISDYGLSQ---NLNIPRKAAKEYIDNYLGHFV------GIKDYMAEEIKNGKDKG 770 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 ++ T +R ++ + +++ + + + T G A K V VY + K N Sbjct: 771 YVETIFKR-RRYIPELNAKNFNIRSFGERIALNTPIQGSAADIIKIAMVK-VYNELKKRN 828 Query: 558 LILML 562 L L Sbjct: 829 LKSKL 833 >gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] Length = 931 Score = 220 bits (560), Expect = 8e-55, Method: Composition-based stats. Identities = 90/501 (17%), Positives = 154/501 (30%), Gaps = 121/501 (24%) Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 + E L + ++ G VD A + + + L+ + L G + + Sbjct: 530 TKIEMPLVRVLASMERAGMYVDPARLAAQSDELVGQIQALEARIRELAGGEEFNLSSPMQ 589 Query: 239 LKTWLFLETGLHLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 L LF GL L +T T +VL K + R + + L+ Sbjct: 590 LSRILFDTLGLPTAGLKKTQRGYYSTNAKVLEDLAKNHEIVRLILEFREKTKIKSTY-LD 648 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 TL DGR+ T +Q IT +S Sbjct: 649 TLGPLRRHDGRVHTT-------------------------------YNQTITATGRLSSS 677 Query: 353 DPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I + V+ EG V D + IE R+LA ++G++ + AF GED Sbjct: 678 SPNLQNIPTRSELGHAVKRAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVSAFNEGED 737 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 + T AR F V +VT R+ K + + Y A + T + + ++ Sbjct: 738 FHAETAARVFGVPVDEVTPQLRSRAKAVNFGIVYGQQAYGLSQ---TLDIPMAEAREMID 794 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + A R + A + + T Sbjct: 795 A------YFRAYPGVRTYLDETVTFAKQTGYAET-------------------------- 822 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + +RR +P L +P+ R R+ +N + Sbjct: 823 -----------MYGRRRPIPE-----------LRIPAQRMF------GERTAMNHPMQ-- 852 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SM 646 G + I A+ + + A ++L VHDE+ E P + +M Sbjct: 853 -------GSAADIIKIAM---VHVAERLRAEGFTAKMILQVHDELDFECPVGEVDRLIAM 902 Query: 647 LYHLMTSNPSWAKGLPLKAEG 667 + M +PL A+ Sbjct: 903 VREEMEGVAE--LRVPLIADA 921 >gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 871 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 90/631 (14%), Positives = 183/631 (29%), Gaps = 153/631 (24%) Query: 43 ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +L + +L+ +E+ V V H+S T L DI I + +A Sbjct: 356 KLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY---DIDIQGFDFDTAIAAY 412 Query: 103 N--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + + ++ + C Y + + Sbjct: 413 LIDSSKANYEVFDLINRFLEKDIKSDSNDLKAIC------SSYLKKLYEKLKEMLH---- 462 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 K D E++ ++ E L Y+ ++ G+ ++ L + K ++ Sbjct: 463 -KED---MDELYYKV------EHPLIYVLSSMESIGFKINQDKLEELRVKFKEQIEKTEK 512 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277 E+ L + ++L LF + L + T+T Q VL P +V Sbjct: 513 EIYELAD-EEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLIDKHPIITKVM 571 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ + L ++ DG + Sbjct: 572 YYRQITKINSTY-VEGLKNVIDIDGCIHS------------------------------- 599 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAW 391 +Q +T +++P+ I +R I + L+ D + IE RVLA Sbjct: 600 NFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAH 659 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A ++ + AFE D++ T + F V +VT R+ K + + Y + Sbjct: 660 VADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSL--- 716 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A + A + Sbjct: 717 AQDLKITKKEAAEYMAIYF----------------------------------------- 735 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ ++ E N + + ++ + I +RR +P + Sbjct: 736 ERYPKIKEYLNYVSEYAKE--KGYVLTILNRRRFIPEIKSSNK---------------IV 778 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625 R +N +Q + DI+ M+N +++ Sbjct: 779 KALGERLAMNAP------------------IQGSAADIIKLAMVNVYNKLREKNLNSELI 820 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 L VHDE++ + L M Sbjct: 821 LQVHDELILNVKKDEFDIVKQLVIEEMEKAI 851 >gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] Length = 908 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 107/659 (16%), Positives = 183/659 (27%), Gaps = 145/659 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 A +D + A L + H + A + + Sbjct: 356 VAVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALHAAK---EASHALAGRGLDLE 412 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 LA P A L + + + + D Sbjct: 413 GVTFDTELAAYLCQPDR-----RAYDLPDLAIGYLRRELGGDDGSSAGQGALDLEVDGAD 467 Query: 152 EAWRLFGEYCKG--DVTV---TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206 E R V V LS E L + + G +D A Sbjct: 468 EGRRAAVRAAAVRDLVDVLGGEVADRGATTLLSDLELPLQAVLARLERTGIAIDHAYLSG 527 Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266 L + D + + ++ G + ++L+ LF + + +T ++ Sbjct: 528 LEREFDGQVQGAAADAYAVI-GREVNLGSPKQLQEVLFDQLRMPKTKRIKTGYTTDANAL 586 Query: 267 KKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323 L + F + A R A+ + L+ ++ DGR+R T Q Sbjct: 587 TDLFARTGHPFLEHLLAHRDAIRLRQTVEGLLRSVADDGRIRTTFQ-------------- 632 Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGK-KLV 377 Q I ++DP+ I +R + G L+ Sbjct: 633 -----------------QTIAATGRLSSADPNLQNIPIRTDAGRQIRRAFVVGPGYATLL 675 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE R++A ++G++ + AF +GEDL+ +R F V +VT R+ K M Sbjct: 676 TADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAMSY 735 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 L Y + + + ++ A L+ Sbjct: 736 GLAYGLSSYGLSQ---QLAIEVSEAAALMT------------------------------ 762 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 R + + L +Q G RR Sbjct: 763 --------------DYFERFGGVRDYLTGVVDQARATGYTATVLGRRRY----------- 797 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-- 615 LP L + RQ RE L I Q + D++ M+ Sbjct: 798 ----LP---------------DLTSDNRQ-RREAAERMALNAPI-QGSAADLIKVAMLGV 836 Query: 616 --NATKAGYD--IVLTVHDEIVCETPDTDEFNASMLYH-LMTSN----PSWAKGLPLKA 665 T+ G ++L VHDE+V E + + L M + P +PL Sbjct: 837 DGELTRRGLRSRMLLQVHDELVLEVAEGEREEVEELVRTQMAAAGSGLPDGPLDVPLDV 895 >gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] Length = 891 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 73/498 (14%), Positives = 161/498 (32%), Gaps = 70/498 (14%) Query: 33 FAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83 AFG D +D ++ LE+ +++ + +K Sbjct: 333 VAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKY----MKHV 388 Query: 84 F-NLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141 F N+ I + ++L + A ++ +EL+ + K + Sbjct: 389 FANVGINLAGVSDDVMLESYVLEAHRSHTIEKLAANWLKYELRGEEELLGKGAKKLSFSQ 448 Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQ 190 + + E+ V + + + + E L + Sbjct: 449 V----------SVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVLF 498 Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 + G +D L ++ + +L+++ + G ++L LF + G+ Sbjct: 499 KMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVA-GENFKLSSPKQLGEILFDKMGVV 557 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 LE + +S N + + + ++ A L++ Sbjct: 558 LEGAKPK---KTISGNYSTSEEVLSELAENYPLAKIA--------------------LEY 594 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVR 365 ++ P P+ R H +Q + +++P+ I VR Sbjct: 595 RTITKLVTTYTEKLPKMVDPKDGRVHTTFEQAVAVTGRLSSTNPNLQNIPIRTEEGRKVR 654 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 I++ G KL+ AD + IE R++A ++ ++ ++AF+ ED++ T A F +VT Sbjct: 655 EAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVT 714 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R I KV+ L Y +A G+ + + + A + ++ Sbjct: 715 PNDRRIAKVINFGLMYGMSPF---GLAKNLGIGRDEAKNYINKFFAR--FPGVHDYMERT 769 Query: 486 QENHPEHAIEDLFIGTAC 503 + + G Sbjct: 770 RALADRQGYVETTFGRRL 787 >gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084] gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084] Length = 922 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 77/442 (17%), Positives = 146/442 (33%), Gaps = 53/442 (11%) Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210 D + L + E L + + G D ++ Sbjct: 492 AALDAVGAWALCPLLARRLEEDGSKGLFCDLEMPLLRVLLQMERTGLHADAGRLAEQSRE 551 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 + E + +++ + ++L LF GL L + T + S+N K Sbjct: 552 LGSEIDCMVATIKADAD-EDFNMDSPQQLSHVLFDVWGLPTFGL-KRTKKGFYSTNAK-- 607 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 TL + DGR+R L + ++ P ++ Sbjct: 608 ----------------------TLEDLAQQDGRVRMILDYRERAKIKSTYLDALPA-DIR 644 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIE 385 R R H L+Q + +S P+ I + VR+ EG + D + IE Sbjct: 645 RDGRIHTTLNQTVAATGRLSSSAPNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIE 704 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA ++ + + AF +G D + T AR F V +VT R+ K + + Y A Sbjct: 705 LRLLAHLSADGHLVGAFNSGADFHAATAARVFGVPVEEVTPQLRSRAKAVNFGIVYGQQA 764 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 +AS+ + ++ + +A R + + A + + T R Sbjct: 765 F---GLASSLRIGRAEAQEMID------RYFEAYPGVRAYLDQSVDFARKRGYAVTMYGR 815 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPS 564 K+ R ++R +L + + G A K V + + + L+L Sbjct: 816 -KRHIRDINARNFQLRSFAERTAMNHPMQGTAADIIKLAMVRVAERLRQEGLRSKLVLQI 874 Query: 565 GRSLVYRDVGNNRSYLNTTTRQ 586 L + + L+ ++ Sbjct: 875 HDELDFEVPKDEIEVLSKLVKE 896 >gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] Length = 871 Score = 220 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 90/631 (14%), Positives = 183/631 (29%), Gaps = 153/631 (24%) Query: 43 ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +L + +L+ +E+ V V H+S T L DI I + +A Sbjct: 356 KLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY---DIDIQGFDFDTAIAAY 412 Query: 103 N--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + + ++ + C Y + + Sbjct: 413 LIDSSKANYEVFDLINRFLEKDIKSDSNDLKAIC------SSYLKKLYEKLKEMLH---- 462 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 K D E++ ++ E L Y+ ++ G+ ++ L + K ++ Sbjct: 463 -KED---MDELYYKV------EHPLIYVLSSMESIGFKINKDKLEELRVKFKEQIEKTEK 512 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277 E+ L + ++L LF + L + T+T Q VL P +V Sbjct: 513 EIYELAD-EEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLIDKHPIITKVM 571 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ + L ++ DG + Sbjct: 572 YYRQITKINSTY-VEGLKNVIDIDGCIHS------------------------------- 599 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAW 391 +Q +T +++P+ I +R I + L+ D + IE RVLA Sbjct: 600 NFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAH 659 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A ++ + AFE D++ T + F V +VT R+ K + + Y + Sbjct: 660 VADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSL--- 716 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A + A + Sbjct: 717 AQDLKITKKEAAEYMAIYF----------------------------------------- 735 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ ++ E N + + ++ + I +RR +P + Sbjct: 736 ERYPKIKEYLNYVSEYAKE--KGYVLTILNRRRFIPEIKSSNK---------------IV 778 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625 R +N +Q + DI+ M+N +++ Sbjct: 779 KALGERLAMNAP------------------IQGSAADIIKLAMVNVYNKLREKNLNSELI 820 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 L VHDE++ + L M Sbjct: 821 LQVHDELILNVKKDEFDIVKQLVIEEMEKAI 851 >gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ] Length = 883 Score = 220 bits (559), Expect = 1e-54, Method: Composition-based stats. Identities = 74/510 (14%), Positives = 152/510 (29%), Gaps = 130/510 (25%) Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 +I +L P+ + + G ++ A + + + +L ++ + Sbjct: 481 HDIDNKLTPVLA----------AMEYEGVHINKAFFSEYEKELQTKLDELQASVDKFSKE 530 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 V + +++ LF E L + T+T S + L + + Sbjct: 531 PV-NLNSPKQVGVLLFEELELPVGKKTKTGYSTDSSVLEDLAAKGLSEVPAL-------- 581 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 L++ + P + H +Q + Sbjct: 582 ------------------ILEYREVGKILSTYVKAIPELLNEASGKIHTHFNQNVAATGR 623 Query: 349 SITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 ++ P+ I + VR IA GK L+ AD + +E R+LA + ++ + AF+ Sbjct: 624 LSSNHPNLQNIPIRSELGRRVRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFK 683 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ T + V +V + R+ K + L Y + +A+ + Sbjct: 684 KGVDIHRRTASEIMGVPVEEVGSNDRSKAKAVNFGLMYGQSSF---GLAAALKIPRKEAK 740 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 + R S + Sbjct: 741 EYIT--------------------------------------------NYFERFSSVKGY 756 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 L E+ + G AI + R+ ++ R +N+ Sbjct: 757 LDHLKEECEKTGYAITLKGRKRYLADIHSTNRTI--------------KANAERVAINSP 802 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETP 637 +Q + DI+ M+N K ++L VHDE++ E Sbjct: 803 ------------------IQGTAADIIKLAMINIQKVLDDKKLKSKMILQVHDELIFEVV 844 Query: 638 DTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 +++ E ++L M S +PL + Sbjct: 845 ESELEEMKTILKDGMEKVVS--LSVPLDVD 872 >gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827] gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827] Length = 888 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 148/474 (31%), Gaps = 126/474 (26%) Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250 I G VD L + Q+ ++ G + ++L+ LF E G+ Sbjct: 498 EIEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVI-GKEINLGSPKQLQVVLFDELGMP 556 Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGT 307 T+T + + L F + A R ++ L++A+ DGR+ T Sbjct: 557 KTKKTKTGYTTDADALQSLFESTQHPFLQHLLAHRDVTRLKTTVDGLLKAVADDGRIHTT 616 Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362 Q I ++DP+ I Sbjct: 617 -------------------------------FHQTIAATGRLSSTDPNLQNIPIRTDEGR 645 Query: 363 CVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421 +R + G +L+ AD + IE R++A ++G++ ++AF +GEDL+ +++F+V Sbjct: 646 RIREGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPT 705 Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481 +VT +QR K M L Y +A + Sbjct: 706 GEVTAEQRRRVKAMSYGLAYGLSEY---GLAQQLRIPAAEA------------------- 743 Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541 ++ SR + + L E+ + G Sbjct: 744 -------------------------REQMEAYFSRFGGVRDYLQSIVEEARKKGYTETIL 778 Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 RR LP LN+ RQ RE L I Sbjct: 779 GRRRY---------------LP---------------DLNSDNRQ-RREMAERMALNAPI 807 Query: 602 VQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649 Q + DI+ M+ A++ ++L VHDE+V E D + L Sbjct: 808 -QGSAADIIKVAMLGVFQALEASELTSRMLLQVHDELVLEIADGERAAVESLVR 860 >gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] Length = 1022 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 80/514 (15%), Positives = 156/514 (30%), Gaps = 137/514 (26%) Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 E++++L + L + + G VD L ++ + V L + + + + G Sbjct: 618 EVYEQL------DLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYA-SSGH 670 Query: 230 VSSSRCLEKLKTWLFLETGLHLE---DLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 + ++L LF + L + +T Q +L + V R Sbjct: 671 RFNINSPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLAQHHEVPAIVLEYRQL-- 728 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 + P R H +Q+ T Sbjct: 729 -----------------------------QKLKSTYLDQLPSLTD-VNGRIHTTFNQVGT 758 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + +P+ I +R+ IA+ G L+ AD + IE R++A + + L Sbjct: 759 ATGRLSSINPNLQNIPIRTAVGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLL 818 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 A+ TG+D++ T A F V A + K+ RA K + + Y +A+ G++ Sbjct: 819 DAYRTGKDIHTLTAAEVFEVDAATMDKETRARAKAVNFGIVYGISPF---GLAAQLGIDQ 875 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ + ++ F E Sbjct: 876 KVAKAYIE--RYFDRYKGVATFIEQTLETVRR---------------------------- 905 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 QA + + R +P + + P+ R R+ Sbjct: 906 -----DQAVKTA--------FGRVRPIPDIQSRN---------PNQRGFA------ERTA 937 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633 +NT Q + D++ M+ A + L VHDE++ Sbjct: 938 VNTPL------------------QGTAADLIKIAMLRIDAAIRTRNLRSLMTLQVHDELL 979 Query: 634 CE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 + P+ + ++ M S +P+ AE Sbjct: 980 FDVVPEEADEMQELVKTEMESAAE--FSVPIVAE 1011 >gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1] gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1] Length = 922 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 93/630 (14%), Positives = 196/630 (31%), Gaps = 156/630 (24%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALK 117 L N+ ++ N F+ VLK + ++A P +L + Sbjct: 409 LFNSQPKLIGQNYKFDYKVLKRH---GFNVISAYFDTMIAAYVIDPNTKVSLDFLAA--- 462 Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 K L+ K +E + ++ + Y D +T +F L Sbjct: 463 ---------KYLMH---KNIKYEEIVPQHSTLKDIPLEIASNYAAEDADITFRLFNILRK 510 Query: 178 ----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227 + + E + I + G +D ++ E ++ E+ + Sbjct: 511 KLKEDNLESLMKNIEMPFSNVIIEIEENGIYLDSNYLTQYGHELEQELKTIENEVIQ-SI 569 Query: 228 GLVSSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G+ + ++L T LF + + + ++T +VL + K ++ N R A Sbjct: 570 GIEFNLNSSKQLHTILFEKLNIIVSKNVKQDSTDIKVLETIKDQHESIEKLINYRQLA-- 627 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + ++ H Q T Sbjct: 628 -----------------------------KLKNTYTDNLIEFINEKTNKIHTNFMQTKTA 658 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 ++ P+ I +R+ ++G + AD + IE +LA ++ ++ ++ Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIE 718 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +D+++ T ++ F V A +T R I K + + + L++ Sbjct: 719 AFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGI-----IYRMSAFRLSQELSIK 773 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 ++A+NF + + FI + VK+ Sbjct: 774 R--------------DEAQNFIDSYFNLYSKI---KTFIQNQIDFVKQN----------- 805 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + ++RR + + + G R + Sbjct: 806 -------------GYSETLLKRRRYIREINSQN---------------YLERTGAERMAI 837 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634 N+ I+Q + DI+ M+ I+L VHDE++ Sbjct: 838 NS------------------IIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLI 879 Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664 E+P+ + A ++ M N ++ +PLK Sbjct: 880 ESPEEECEKAQIIIKEMMEN-AYPLKIPLK 908 >gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] Length = 873 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 97/600 (16%), Positives = 209/600 (34%), Gaps = 103/600 (17%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVMPQ 55 D ET S E+ ++ F+F F+++ H D + Sbjct: 324 SFDTETTS------------LENPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEKIAL 371 Query: 56 VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115 E + V HN F+ +LK + P + T++L S + A Sbjct: 372 KAIEKILEKKVI--GHNLKFDFKMLKDY-KIKTPTP-FADTMILGWIIDPDSPVGLDSLA 427 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 + + + + KE++ +N+ + +Y D +T ++++ L Sbjct: 428 KRYLNHQNIKYKEIVG-------------KNQNFSEIDIKTAAKYASEDAIITLKLYEVL 474 Query: 176 EP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + + + E L + + G VD+ L + + + L +E+ +L Sbjct: 475 KEKTWEEVKWDIENIEMPLINILIDMEKEGIKVDIEYLEKLQKELTQKLENLTKEIYNLA 534 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRA 283 G + + ++L LF L ++ T+T ++VL+S K P ++ R + Sbjct: 535 -GSEFNIKSPKQLSHILFKVLKLPVKKKTKTGYSTDEKVLNSLKNTHPIIEKLLEYR-KF 592 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L E D + + + Q Sbjct: 593 DKLLTTYIIPLKEYAKKD-----------------------------KNQKVYTNFLQTG 623 Query: 344 THLPTSITSDPDPLQIISD---CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400 T + +P+ I + +R+ I K + D + IE R+LA + + ++ Sbjct: 624 TATGRLSSKNPNLQNIPTSTEINIRNAFI--TDKLFISLDYSQIELRLLAHFSKDPHLIE 681 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF +D+++ T A+ F K+ R+I K + L Y G +K++ T ++ Sbjct: 682 AFLNDKDIHLETAAKIFG---EDKAKEYRSIAKSINFGLIYGMGP---KKLSETINVSTK 735 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + E++ + + + E E ++ T +R + + +S + Sbjct: 736 EAKEFI------EKYFENFSTVKDFIEKTKVETKEKGYVETLFKR--RRFFDFNSANART 787 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + TI G A K+ ++ +K + ++L L++ + +Y Sbjct: 788 LAAYEREAVNTIFQGSAADIIKKA---MIDIKNKFPSSKMILQIHDELIFEIDNKDEAYE 844 >gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] Length = 875 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 88/565 (15%), Positives = 183/565 (32%), Gaps = 68/565 (12%) Query: 35 FGFDDHPV-------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACFNL 86 + D+ PV +++ + + + KE E+ D+ F+ + Sbjct: 328 YYVDNEPVIFAIYTDKVY-ITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRY 382 Query: 87 DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 I I +V+ PS + K+ + +++ + +T + Sbjct: 383 GIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 + N+ + +F + E + E L + + G CV Sbjct: 443 KEIDNYIVKYMMFTNKL-YEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETL 501 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261 + ++ + E ++ +E L G + ++L LF + L + +T T Q Sbjct: 502 VEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGPSTDQE 560 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + + R + ++ +V+ + DG++ Sbjct: 561 VLEALSGRHEIIDYILRYRTIT-KLKTTYIDGMVDLIKKDGKI----------------- 602 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 H Q I +++P+ I +R + S G L Sbjct: 603 --------------HTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSGGNVL 648 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE RVLA +A ++ + AF+ G D++ T + F V +VT QR+ K + Sbjct: 649 LDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVN 708 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y G + + + E + D + E+ E Sbjct: 709 FGIVYGIGDYSLS---KDLHITRKEAKEYI------ENYLDTYKGIKQYMEDIVAIGKEK 759 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ T R ++ + S+ + + + T G A K V ++ Sbjct: 760 GYVETIMNR-RRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEK 818 Query: 557 NLI-LMLPSGRSLVYRDVGNNRSYL 580 L+L L+ + R + Sbjct: 819 LKAKLILQVHDELIVDCPKDEREKV 843 >gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6] gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6] Length = 885 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 76/484 (15%), Positives = 146/484 (30%), Gaps = 126/484 (26%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 E L Y + + G V T + + +L+ + G + + Sbjct: 485 YDEVEMPLVYTLCHMEEAGIRVLPDELETYGENLKEGIARLETSIYE-AAGEKFNINSPK 543 Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +L LF + L T+T T VL P + R + + L Sbjct: 544 QLGVILFEKMQLPGGKKTKTGYSTAADVLEKLAVDVPFVADILEYRQLTKLKSTYA-DGL 602 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 + +DGR H Q IT +++P Sbjct: 603 AACIAADGR-------------------------------IHTTFKQTITATGRISSTEP 631 Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I + +R C + +G V AD + IE RVLA ++G++ ++A+ ED++ Sbjct: 632 NLQNIPTRIELGRQIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIH 691 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T ++ F+V ++VT R K + + Y A ++ ++ + + Sbjct: 692 AITASQVFHVPLSEVTPLMRRNAKAVNFGIVYGISA---HGLSEDLNISRKEAQEYIDS- 747 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + + + + L + + Sbjct: 748 ----------------------------------------YYEAYPGIRGYLESLVETAK 767 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + +RR +P L SG + R G R N Sbjct: 768 K--KEYSETYYGRRRPMP-------------ELSSGNFMQ-RQFGE-RVAKNAP------ 804 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFN 643 +Q + DI+ M + ++L VHDE++ ET + + Sbjct: 805 ------------IQGTAADIIKIAMNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELER 852 Query: 644 ASML 647 + Sbjct: 853 VREI 856 >gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik] gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik] Length = 600 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 115/582 (19%), Positives = 200/582 (34%), Gaps = 88/582 (15%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73 +D G+ Y+ L FG D L + Q +EAL+ V N+ Sbjct: 40 VDTETTGLDIYSSTFRCRLVQFGTQDEAWVLPVDESPTQLQQETREALDKLGKI-VMQNA 98 Query: 74 YFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLS--------SQKM 123 ++ VL CF + + + + T +LA+ P A G L + Sbjct: 99 SYDLQVLDHCFGIKMEDLWPKVLDTQILAKLVD-PRPYGAGGFGHSLEELIAEFISKDQA 157 Query: 124 EEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181 ++ K L+A+ K + H E + Y D T I ++L L Sbjct: 158 KDVKGLMAKLAKEHKTTKAKIWSTIDLFHPE----YLTYAGMDTIFTARICRKLTRLVPD 213 Query: 182 --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E ++ + I+ +G+ +DV A L+ E++ + L + YGL + Sbjct: 214 VSRGLVPYEHKISEICSYIDRKGFQLDVEYAQELSDRWLYEKSVWEAILFT-EYGL-DNP 271 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-----KKLTPQ---AIQVFNNRMRASR 285 E+ + E G ++ T+T ++V + KK TP+ + + + Sbjct: 272 NSNEQCADVI-EEAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAALAAMIQEAQKLGK 330 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + +E +SD R + L A RT R S P Q LP + Sbjct: 331 WRNTWVQKFLEVKDSDDRCHTFVNPLQA-RTSRMSITGIPAQTLPAGDWT---------- 379 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 VR C +A G + D E RVLA ++G++ ++AF+TG Sbjct: 380 ------------------VRRCFLAEPGHVMSSIDYQTQELRVLAALSGDKTMIEAFKTG 421 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 DL+ T + R IGK+ Y GGAK + A+ Sbjct: 422 ADLHQMTA---------DAAQVPRKIGKMANFLTVYGGGAKTLAEQAN------------ 460 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + +A E + + A E G + + SR N + Sbjct: 461 IDFPTAKRVLEAFAKTYPGVARYSKKLAAEAGRQGYIVNGMGRRLPVDSSRTYSALNYMI 520 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 Q+ + + I + P + + + LP+ ++ Sbjct: 521 QSSSRDVTCRALIRLHEAGFTPYLRLPIHDEIVA-SLPAEKA 561 >gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 849 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 84/531 (15%), Positives = 158/531 (29%), Gaps = 138/531 (25%) Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210 G + R ++ L L E L + + G+ V+ + Sbjct: 421 WAGATILLRNLWDELSKLIDLNSCQYVYENIEIPLVPILYEMEKIGFKVNKNTLQEYTKE 480 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNK 267 ++ + KL+ ++ + G + ++L LF + L + T+T VL Sbjct: 481 IESKLLKLETQIYQIA-GEWFNINSPKQLSYVLFEKLKLPVVKKTKTGYSTDAEVLEELY 539 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 + + RM ++ T Sbjct: 540 DKHEIVPLILDYRMYT-------------------KILTTYCQGLMQAINSV-------- 572 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLA 382 R H Q T +++ + I +R I EG L+ AD + Sbjct: 573 ----TGRVHSNFIQTGTATGRLASAESNLQNIPVKYDEGRLIRKAFIPEEGYVLIDADYS 628 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA ++ ++ + AF+ D++ T A F V +QVT R+ K + + Y Sbjct: 629 QIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDVSQVTPTMRSQAKAVNFGIIYG 688 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 ++ ++ A + Sbjct: 689 ISDY---GLSKDIKISRKEAAEFIN----------------------------------- 710 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 + +K+ +V E L + ENG + R+ +KN Sbjct: 711 ------RYFEKYPKVKE---YLDNVVKFARENGFVLTLFNRKRYIKDIKSTNKN------ 755 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617 R+ R +N+ +Q + DI+ M+ Sbjct: 756 --LRNYA------ERIAMNSP------------------IQGSAADIMKIAMIRVYRRLK 789 Query: 618 -TKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 I+L VHDE++ E+P + E ++ M + S +PL E Sbjct: 790 EENLKSRIILQVHDELLIESPYEEKEIVKEIVKTEMENAVS--LKVPLVVE 838 >gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 906 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 112/631 (17%), Positives = 182/631 (28%), Gaps = 144/631 (22%) Query: 46 DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 D + A L + V HN+ ++ I LA Sbjct: 376 DPTEVDEEDERAFAAWLADPARPKVLHNAK---GAMRVFAEHGWTIEGVTMDTALAAYLV 432 Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKG 163 P +AL L + L + EA L Sbjct: 433 KPGRRSFDLDALTL--------EYLGRELAPPAAADGQLAFGADEEAEADALMVQARAIL 484 Query: 164 DV--TVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219 D+ T + + L E L + G D A ++ Q+ + Sbjct: 485 DLGEAFTGRLKEVGAADLLGDMELPTSALLARMERHGIAADRAHLESMEQMFAGAVQQAV 544 Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK---LTPQAIQV 276 +E + G + ++L+ LF E GL T+T + T + V Sbjct: 545 REAHA-AAGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTENELPV 603 Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336 R R + + L++ + +DGR+ T Sbjct: 604 IMLRHREQAKLRVTVEGLIKTIAADGRIHTT----------------------------- 634 Query: 337 EELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLA 390 +Q + ++DP+ I +R + EG + L+ AD + IE RV+A Sbjct: 635 --FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMA 692 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 ++ + ++AF +GEDL+ T ++ F V + V + R K M L Y A + Sbjct: 693 HLSEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 752 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 G+ L Sbjct: 753 ---QLGIEAAEARTL--------------------------------------------M 765 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R + + L + E+ G RR LP Sbjct: 766 EAYFERFGGVRDYLRRVVEEARATGYTATLFGRRRY---------------LP------- 803 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624 LN+ RQ RE L I Q + DI+ M+ +A + Sbjct: 804 --------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKIAMLRVGEALRAAGLASRM 853 Query: 625 VLTVHDEIVCE-TPDTDEFNASMLYHLMTSN 654 +L VHDEIV E P E ++L MT+ Sbjct: 854 LLQVHDEIVLEIAPGERERVEALLRREMTTA 884 >gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] Length = 871 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 62/388 (15%), Positives = 124/388 (31%), Gaps = 45/388 (11%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G V+ + +L++E+ + G + ++L Sbjct: 473 EIEMPLVFTLYEMEQAGIHVEGEALKAYGDQLGNRIVELEKEIYDMA-GETFNINSPKQL 531 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + + T+T KL P+ V Sbjct: 532 GVILFEKLEMPHAKKTKTGYSTAADVLDKLAPEYPIVAK--------------------- 570 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 L++ ++ P R H + +Q IT +++P+ I Sbjct: 571 -------ILEYRQLTKLKSTYADGLATFIGP-DGRIHGKFNQTITATGRISSTEPNLQNI 622 Query: 360 -----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 + +R + EG V AD + IE R+LA +G++ ++A+ D++ T + Sbjct: 623 PVRMELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTAS 682 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F+V +VT QR K + + Y + + + A + E Sbjct: 683 QVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQ---DLSITRKEAARYI------EH 733 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 + + + + A E + T R + K S + + + Sbjct: 734 YFETYPGIKTFLDQCVADAKEKGYAVTLFGRRRPVPELKSSNFMQ-RSFGERVAMNAPIQ 792 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILML 562 G A K + + K +N M+ Sbjct: 793 GTAADIIKIAMIRVSDEMKKQNMKSRMI 820 >gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1] gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1] Length = 956 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 101/548 (18%), Positives = 166/548 (30%), Gaps = 139/548 (25%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------- 181 L A + RE W +T + + L PL Sbjct: 501 LYAYLLDPANTNMPVVAKRYLDRE-WPA---DAPTRAAITGHLLRELPPLLDDARRKMYD 556 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E+ L + + RG VD TL+ V L+ ++ G R ++L Sbjct: 557 EMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYA-GEEFHIRSPKQL 615 Query: 240 KTWLFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +T L+ + L T+ T QR L + P V R Sbjct: 616 ETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFREL------------ 663 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +LRGT P P R H Q + +P Sbjct: 664 -------DKLRGT------------YLDPIPNLVNPHTGRLHTTFAQTAVATGRLSSLNP 704 Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I + +R IA +G L+ AD + IE R+LA +A + +AF G D++ Sbjct: 705 NLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIH 764 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A+ + A V +QR K + + Y A ++++ G+ Sbjct: 765 RRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSA---HRLSNDLGI------------ 809 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + +A F +P +I + + + H V L+ Sbjct: 810 ----PYAEAATFIEIYFATYP---GIRRYINHTLD-----FGRTHGYVETLY-------- 849 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +RR VP + + N R+ Sbjct: 850 -----------GRRRYVPGLSSR----------------------------NRVQREAEE 870 Query: 590 EYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETP-DTDEFNA 644 Y +Q + DI+ M G ++L VHDE++ E P D E A Sbjct: 871 RLAY-----NMPIQGTAADIMKLAMVQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVA 925 Query: 645 SMLYHLMT 652 ++ +M Sbjct: 926 ALTKKVME 933 >gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 903 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 114/621 (18%), Positives = 184/621 (29%), Gaps = 139/621 (22%) Query: 46 DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 D + A + + V HN+ V++ + LA Sbjct: 373 DPTQLEEADEQAFAAWVSDPARPKVLHNAK---NVMRVLPEHGWQLEGVTMDTALAAYLV 429 Query: 105 LPSALKAVGEALKLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 P +AL + G+EL A G+ DR + + A Sbjct: 430 KPGRRSFALDALAVEYL----GRELAPAAAADGQLAFGADDRAEQDALMAQARAVLDLG- 484 Query: 164 DVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D TR + + E L E L + G D A + Q + +E Sbjct: 485 DAFTTR-LKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAVKE 543 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFN 278 + G + ++L+ LF E GL T+T + L Q V Sbjct: 544 AHA-AVGREFNLGSPKQLQEILFNELGLPKTKKTKTGYTTDADALAWLAAQTEHELPVLM 602 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R R + + L++ + +DGR+ T Sbjct: 603 LRHREQAKLRVTVEGLIKTIATDGRIHTT------------------------------- 631 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392 +Q + ++DP+ I +R + EG + L+ AD + IE RV+A + Sbjct: 632 FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + ++AF +GEDL+ T ++ F V V + R K M L Y A + Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ-- 749 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 ++ L+ T Sbjct: 750 -QLNIDPAEARVLMDTYF------------------------------------------ 766 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 R + + LH+ E+ G RR LP Sbjct: 767 --ERFGGVRDYLHRVVEEARATGYTETILGRRRY---------------LP--------- 800 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626 LN+ RQ RE L I Q + DI+ M+ KA ++L Sbjct: 801 ------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLRVDKALTEAGLTSRMLL 852 Query: 627 TVHDEIVCETPDTDEFNASML 647 VHDEIV E + + Sbjct: 853 QVHDEIVLEIAKGERKQVEEI 873 >gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] Length = 873 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 82/510 (16%), Positives = 164/510 (32%), Gaps = 119/510 (23%) Query: 153 AWRLFGEYCKGDVTVTREIFKR-LEPL-SSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210 A + + D + + + +E + E + Y+ +++ G V+ Sbjct: 448 ALEAYVAFNSFD-EAMKRLRETDMEKVYHDIELPVIYVLKSMEKYGIAVNKDALKQYGDE 506 Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNK 267 + V+ L+Q + G + ++L LF + L T+T VL Sbjct: 507 LSVKIKDLEQSIYKEA-GTEFNINSPKQLGEVLFEKLNLPCGKKTKTGYSTSADVLEKLS 565 Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327 P + R A + +DG +++ Sbjct: 566 ADYPIVDSILEYRTLAKLKSTY----------ADG----LAEYI---------------- 595 Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLA 382 R H +Q IT +++P+ I + +R + +G + AD + Sbjct: 596 ---VDGRIHSTFNQTITATGRISSTEPNLQNIPIRMELGRKIRKVFVPEDGFIFMDADYS 652 Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442 IE R+LA M+G+ ++A+ D++ T ++ F +VT QR+ K + + Y Sbjct: 653 QIELRLLAHMSGDDTLIEAYNEDRDIHKITASKVFKTPLDEVTPRQRSNAKAVNFGIVYG 712 Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502 + ++ ++ + E+ + + +N + A E+ + T Sbjct: 713 ISSF---GLSRDLSISKKEAKEYID------EYFNTYKTLKNYLDNLVKSAKENGYTKT- 762 Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562 I +RR VP L Sbjct: 763 ------------------------------------IYGRRRPVP-------------EL 773 Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622 SG + R G R +N+ + G + I A+ I + + Sbjct: 774 SSGNFMQ-RQFGE-RIAMNSPLQ---------GTAADIIKIAM---INVYKRLKNERLES 819 Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLM 651 ++L +HDE++ ET +E +L M Sbjct: 820 RLILQIHDELLIETKIGEEEQVRKILSEEM 849 >gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] Length = 871 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 89/631 (14%), Positives = 184/631 (29%), Gaps = 153/631 (24%) Query: 43 ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102 +L + +L+ +E+ V V H+S T L DI I + +A Sbjct: 356 KLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKY---DIDIQGFDFDTAIAAY 412 Query: 103 N--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 + + + + ++ + + C + + H+E Sbjct: 413 LIDSSKANYEVFDLINRFLEKDIKSDCDDLKAICSSYLTKLYEKLKERLHKED------- 465 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 E++ ++ E L Y+ ++ G+ ++ L + K ++ Sbjct: 466 -------MDELYYKV------EHPLIYVLSSMESIGFKINKDKLEELRIKFKEQIEKTEK 512 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVF 277 E+ L + ++L LF + L + T+T Q VL P +V Sbjct: 513 EIYELAD-EEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLIDKHPIITKVM 571 Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337 R ++ + L ++ DG + Sbjct: 572 YYRQITKINSTY-VEGLKNVIDIDGCIHS------------------------------- 599 Query: 338 ELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAW 391 +Q +T +++P+ I +R I + L+ D + IE RVLA Sbjct: 600 NFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAH 659 Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451 +A ++ + AFE D++ T + F V +VT R+ K + + Y + Sbjct: 660 VADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSL--- 716 Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511 A + A + Sbjct: 717 AQDLKITKKEAAEYMAIYF----------------------------------------- 735 Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571 +++ ++ E N + + ++ + I +RR +P + Sbjct: 736 ERYPKIKEYLNYVSEYAKE--KGYVLTILNRRRFIPEIKSSNK---------------IV 778 Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625 R +N +Q + DI+ M+N +++ Sbjct: 779 KALGERLAMNAP------------------IQGSAADIIKLAMVNVYNKLREKNLNSELI 820 Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655 L VHDE++ + L M Sbjct: 821 LQVHDELILNVKKDEFDIVKQLVIEEMEKAI 851 >gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP] gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP] Length = 897 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 77/431 (17%), Positives = 145/431 (33%), Gaps = 57/431 (13%) Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 RL+ + E+ L + + RG +D L+ + +L+ ++ G S Sbjct: 492 RLKLYTEVEKPLSGVLARMEARGVRLDSEYLQGLSLALAERLERLEAQIHE-AAGREFSI 550 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAV 288 R ++L+ L+ E GL T+ T +R L + P + R Sbjct: 551 RSRDQLEAVLYDELGLASGKKTKLTGKRSTAMTALEPLRDEHPIIPLILEYRELE----- 605 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 +LRGT P PR R H Q Sbjct: 606 --------------KLRGT------------YLDPLPRLVNPRTGRLHTTFAQTAVATGR 639 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 + +P+ I +R IA G +LV AD + +E R++A +AG++ +AF+ Sbjct: 640 LSSLNPNLQNIPIRSEEGRQIRKGFIADGGFRLVAADYSQLELRLMAHIAGDEPMQRAFQ 699 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 G D++ T A+ + + V +QR K + + Y A ++++ G+ Sbjct: 700 EGADIHRRTAAQVLGLDESTVDVNQRRAAKTVNFGVLYGMSA---HRLSNELGIPYAEAT 756 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 ++ + + + + E +H + G ++ + +R L Sbjct: 757 SFIE--NYFGIYPGIQRYIEETLEFGRQHGYVETLYGR-----RRYVPELKARNRNLREA 809 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583 + G A K V + + D ++L L + + Sbjct: 810 GERLAYNMPIQGTAADIMKMAMV-ALEPQLDALGARMLLQVHDEL----LIEAPADRAEE 864 Query: 584 TRQLTREYTYG 594 LTR+ G Sbjct: 865 VAALTRQVMEG 875 >gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 903 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 114/621 (18%), Positives = 184/621 (29%), Gaps = 139/621 (22%) Query: 46 DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 D + A + + V HN+ V++ + LA Sbjct: 373 DPTQLEEADERAFAAWVSDPARPKVLHNAK---NVMRVFPEHGWRLEGVTMDTALAAYLV 429 Query: 105 LPSALKAVGEALKLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 P +AL + G+EL A G+ DR + + A Sbjct: 430 KPGRRSFALDALAVEYL----GRELAPAAASDGQLAFGADDRAEQDALMAQARAVLDLG- 484 Query: 164 DVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D TR + + E L E L + G D A + Q + +E Sbjct: 485 DAFTTR-LKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAVKE 543 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFN 278 + G + ++L+ LF E GL T+T + L Q V Sbjct: 544 AHA-AVGREFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHELPVLM 602 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R R + + L++ + +DGR+ T Sbjct: 603 LRHREQAKLRVTVEGLIKTIAADGRIHTT------------------------------- 631 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392 +Q + ++DP+ I +R + EG + L+ AD + IE RV+A + Sbjct: 632 FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + ++AF +GEDL+ T ++ F V V + R K M L Y A + Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ-- 749 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 ++ L+ T Sbjct: 750 -QLNIDPAEARVLMDTYF------------------------------------------ 766 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 R + + LH+ E+ G RR LP Sbjct: 767 --ERFGGVRDYLHRVVEEARATGYTETILGRRRY---------------LP--------- 800 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626 LN+ RQ RE L I Q + DI+ M+ KA ++L Sbjct: 801 ------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLRVDKALTEAKLTSRMLL 852 Query: 627 TVHDEIVCETPDTDEFNASML 647 VHDEIV E + + Sbjct: 853 QVHDEIVLEIAKGERQQVEEI 873 >gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122] gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122] Length = 905 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 75/477 (15%), Positives = 142/477 (29%), Gaps = 129/477 (27%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 + L + + G +DV + + V E + + L G + ++L Sbjct: 506 DIDLPLVPVLAVMERVGARIDVDALAEMGRSVAEEIDGIRTRVFELA-GEEFNLDSPKQL 564 Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + GL T+ +T + LS + + P A ++ R A + + L Sbjct: 565 SVVLFEKLGLPHGKKTQRGYSTDAKTLSKLEDVHPIAREILRYRELAKMESTY-IEALPR 623 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 DG H +Q +T +SDP+ Sbjct: 624 MRAGDG-------------------------------LVHTHFNQTVTTTGRLSSSDPNL 652 Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R C + G + AD + IE R+LA ++ ++ + AF +G D + Sbjct: 653 QNIPVRTEFGRRIRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHA 712 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 +T AR F V +VT R+ K + + Y A +A G+ ++ Sbjct: 713 STAARVFGVPLEEVTPSMRSRAKAVNFGIVYGQQAF---GLAQNLGIGFKEAQEMID--- 766 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A R + E + Sbjct: 767 ---RYFEAYPGVRAFLDGTVEE------------------------------------VR 787 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTR 589 + R+R +P ++ G R+ +N + Sbjct: 788 ACGYATTMFGRRRH-----------------IPELKAKNPAQRGFGERTAMNHPMQ---- 826 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD 640 + DI+ M + +++ VHDE+ P ++ Sbjct: 827 --------------GSAADIVKMAMNEVQRRLVDGGFAAQVMIQVHDELDLSVPVSE 869 >gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4] gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4] Length = 885 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 104/662 (15%), Positives = 204/662 (30%), Gaps = 156/662 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F ELW ++ + L E L N V + + L + + Sbjct: 341 CGFAI-GTDKELWVSDDVELLREPALSEILANQKVVVNVFDGKRTYVGLHR-LGVTLNSI 398 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 + L + ++ A + + ++ E+ K R P Sbjct: 399 NYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAK---------RAVPAKD 449 Query: 152 EAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWY--------LDQTINDRGYCVDV 201 K DV R + + L +++++ +L++ + + G VD Sbjct: 450 VLLEHLAH--KIDVIGELGRRLQEEL--INNQQADLYWKIELPLSIVLAKMEISGIKVDR 505 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + + ++L+ ++ G + ++L LF + + T+T Sbjct: 506 ERLGAMQSELTERLSELESQIHQEA-GEEFNINSPKQLGHILFEKLEFPVIKKTKTGYST 564 Query: 262 ---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + +P + + R A + ++ ++ + Sbjct: 565 AVNVLEKLRGYSPIIDHILDYRTIAKIKSTY--------VDGLLKVIHSTDQ-------- 608 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 + H Q +T ++DP+ I +R + S E Sbjct: 609 ---------------KVHTTYQQTLTQTGRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHE 653 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAI 431 G ++ +D + IE RVLA + G+ +AF+ ED++ +T R F ++VT + R Sbjct: 654 GWHILSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQ 713 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + G++ + T + + + E Sbjct: 714 AKAVNFGIVYGISDYGLSQ---NIGISRKDAKRFIDT------YFKEYPGVKKYVDGSVE 764 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 A E ++ T IA +RR +P ++ Sbjct: 765 TAREKGYVET-------------------------------------IAHRRRYLPDIHA 787 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 S RS R+ +NT +Q + DI+ Sbjct: 788 SNF---------SVRSFA------ERTAMNTP------------------IQGSAADIIK 814 Query: 612 EGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 M+N ++L VHDE++ E PD + L +M S +PLK Sbjct: 815 IAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLK 872 Query: 665 AE 666 E Sbjct: 873 VE 874 >gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] Length = 930 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 79/523 (15%), Positives = 166/523 (31%), Gaps = 136/523 (26%) Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 D+ R ++ + E L ++ + RG VD + + +D +++ ++ Sbjct: 508 EDILQERNQWQL---YKNIELPLAFILARMEFRGIKVDARVLTEMEANIDHRLSEISTKI 564 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNN 279 + G + ++L LF + L + T+T + L + + + Sbjct: 565 FEIA-GEEFNLNSPKQLGYILFEKLQLPVVKKTKTGYSTDAKTLETLSHDYEICKLLLDY 623 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R + L L + ++ + H Sbjct: 624 RQL-HKLKTTYLVGLKDLISKT------------------------------TGKIHTTY 652 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMA 393 +Q IT ++DP+ I +R + + + AD + IE R+LA ++ Sbjct: 653 NQTITATGRLSSTDPNLQNIPIKLEEGRKIRKGFVIQNSDQLFLAADYSQIELRILAHVS 712 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + ++AF+ +D++ T A+ F V QVT++ R+ K + + Y ++ Sbjct: 713 EDTNLIQAFQEQQDIHTQTAAQVFEVESTQVTREMRSHAKAVNFGIVYGISDY---GLSR 769 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 G++ + Sbjct: 770 QLGISRKQAKTYIDNYLT------------------------------------------ 787 Query: 514 HSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 R S + + Q Q NG + +RR++P + S R+ R Sbjct: 788 --RFSGVKEYMDQIVNQAKMNGYVETLYNRRRNLPDI--------------SHRNFNIRS 831 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--------I 624 R+ +NT +Q + DI+ + M+ K + Sbjct: 832 A-AERTAINTP------------------IQGTAADIIKDAMVKVEKELEKQDLLDKAAL 872 Query: 625 VLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 +L VHDE++ E + A+ + +M + +PL + Sbjct: 873 LLQVHDELILEINKEVLSDVATKVKEIMENIIE--LKVPLTVD 913 >gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] Length = 870 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 83/488 (17%), Positives = 152/488 (31%), Gaps = 127/488 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G+ VD A + + + ++QE+ G + ++L Sbjct: 471 EVELPLARVLAQMEHAGFLVDAAGIAAYGETLGKKLAAIEQEIVD-AVGYPFNLNSPKQL 529 Query: 240 KTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF++ GL T+T T VL + P + R Sbjct: 530 GEALFVKLGLPHGKKTKTGWSTSADVLDKLRGAHPAIDALLGYRKL-------------- 575 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 S+ + + R H +Q+ T +++P+ Sbjct: 576 -----------------SKLKSTYTDGL-LKVIAPDGRIHSSFNQVETRTGRISSTEPNL 617 Query: 357 LQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R +A G LV AD + IE R+LA +A + + AF ED++ Sbjct: 618 QNIPVRSAEGRELRRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTI 677 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 T ++ F + P VT R+ K + + Y GA + + G+++ +K Sbjct: 678 TASQVFGMPPEYVTPIMRSRAKAVNFGIVYGIGAFSLSQ---DIGVSVKEADSYIKG--- 731 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 + + R E + R+ H + Sbjct: 732 ---YLQKFSGVRDYME--------------------RVIREAHEK--------------- 753 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + + R+R L +L S ++ R NT Sbjct: 754 -GYVETLFGRRR-------------VLPELLSSNHNMRAF---GERVARNTP-------- 788 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNA- 644 +Q + DI+ M+ ++L VHDE++ E P+ + A Sbjct: 789 ----------IQGTAADIIKIAMVRVRDRLEREQMQSALILQVHDELIVEAPEDEAARAG 838 Query: 645 SMLYHLMT 652 +L M Sbjct: 839 QILEEEME 846 >gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] Length = 903 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 114/621 (18%), Positives = 184/621 (29%), Gaps = 139/621 (22%) Query: 46 DCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104 D + A + + V HN+ V++ + LA Sbjct: 373 DPTQLEEADERAFAAWVSDPARPKVLHNAK---NVMRVFPEHGWRLEGVTMDTALAAYLV 429 Query: 105 LPSALKAVGEALKLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163 P +AL + G+EL A G+ DR + + A Sbjct: 430 KPGRRSFALDALAVEYL----GRELAPAAASDGQLAFGADDRAEQDALMAQARAVLDLG- 484 Query: 164 DVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221 D TR + + E L E L + G D A + Q + +E Sbjct: 485 DAFTTR-LKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAVKE 543 Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFN 278 + G + ++L+ LF E GL T+T + L Q V Sbjct: 544 AHA-AVGREFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHELPVLM 602 Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338 R R + + L++ + +DGR+ T Sbjct: 603 LRHREQAKLRVTVEGLIKTIAADGRIHTT------------------------------- 631 Query: 339 LDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWM 392 +Q + ++DP+ I +R + EG + L+ AD + IE RV+A + Sbjct: 632 FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691 Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452 + + ++AF +GEDL+ T ++ F V V + R K M L Y A + Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ-- 749 Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512 ++ L+ T Sbjct: 750 -QLNIDPAEARVLMDTYF------------------------------------------ 766 Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572 R + + LH+ E+ G RR LP Sbjct: 767 --ERFGGVRDYLHRVVEEARATGYTETILGRRRY---------------LP--------- 800 Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626 LN+ RQ RE L I Q + DI+ M+ KA ++L Sbjct: 801 ------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLRVDKALTEAKLTSRMLL 852 Query: 627 TVHDEIVCETPDTDEFNASML 647 VHDEIV E + + Sbjct: 853 QVHDEIVLEIAKGERKQVEEI 873 >gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] Length = 871 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 84/537 (15%), Positives = 162/537 (30%), Gaps = 137/537 (25%) Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAH 205 +AW + ++KRL+ E L + + G V+ Sbjct: 439 DAWMKACYEAYTAYAASGILWKRLKECLMDRLFMDVEMPLVFTLYDMEVNGVRVEAEALK 498 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRV 262 + + +L++++ G + ++L LF + T+T T V Sbjct: 499 YYGDQLGAKIVELEKDIYEEA-GENFNINSPKQLGVVLFENMKIPGGKKTKTGYSTAADV 557 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L P ++ R + + L + DG Sbjct: 558 LEKLAPDYPIIAKILEYRQYTKLKSTYA-DGLANYIREDG-------------------- 596 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLV 377 R H + +Q IT +++P+ I + +R I +G V Sbjct: 597 -----------RIHSKFNQTITATGRLSSTEPNLQNIPIRVELGRLIRKVFIPEDGFVFV 645 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA +G+ ++A++ +D++ T ++ F++ +VT QR K + Sbjct: 646 DADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFDEVTDQQRRNAKAVNF 705 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y + + S T IED Sbjct: 706 GIVYGISSFGLSQDLSIT-------------------------------RKEASKYIEDY 734 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 F + + ++ + ++ + + R+R L + + Sbjct: 735 FT-------------AYPGIKIFLDDTVKHAKE-MGYVVTLFGRRRPVPELSSSNYMQRS 780 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 R +N +Q + DI+ M Sbjct: 781 F----------------GERVAMNAP------------------IQGTAADIIKIAMTGV 806 Query: 618 ------TKAGYDIVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666 K +VL VHDE++ E P+ D+ +L M S +PL+ + Sbjct: 807 GRRLKEQKMKSRLVLQVHDELLVEAYKPELDQVK-KILKEEMEQAAS--LDVPLEID 860 >gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 879 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 157/491 (31%), Gaps = 127/491 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L + + G V+ L L+ + ++ + + G + + Sbjct: 476 LTDIEMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVI-GREINLGSPK 534 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN---TL 294 +L+ LF + + +T +S L QA F N + R A + + Sbjct: 535 QLQEVLFTQLEMPKTRANKTGYSTDAASLADLQEQAPHPFLNLLLQHRDATKLVQIITGI 594 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +A++ GR+ T +Q + ++DP Sbjct: 595 EKAIDDSGRVHTT-------------------------------YEQAGSSTGRIASNDP 623 Query: 355 DPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + + +RS A G L+ AD + IE R++A ++G++ ++AF GEDL Sbjct: 624 NLQNVPIKTATGRQIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDL 683 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + +R F V PA+VT + R K M L Y A ++ + + L+ Sbjct: 684 HRFVGSRIFGVEPAEVTAEMRTKVKAMSYGLAYGLSAF---GLSKQLRIETSEAKALMT- 739 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 +R + + L Sbjct: 740 -------------------------------------------DYFARFGAVRDYLRNVV 756 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 EQ +G RR P G LN+ R L Sbjct: 757 EQARTDGYTTTIFGRRR-----------------PFGD-------------LNSKNRVL- 785 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMN------ATKAGYDIVLTVHDEIVCETPDTD-E 641 R+ L I Q + DIL M+ ++L VHDE+V E + E Sbjct: 786 RDNAERQALNSPI-QGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELE 844 Query: 642 FNASMLYHLMT 652 ++++ M+ Sbjct: 845 RMTTIVHERMS 855 >gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411] gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411] Length = 801 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 159/485 (32%), Gaps = 125/485 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 LS E L + ++ RG +D + + + ++++ +L G + + Sbjct: 402 LSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLYATEKQIHALA-GEEFNINSTK 460 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT---PQAIQVFNNRMRASRSAVLKLNTL 294 +L+ LF + G+ T+T S + L A + R S+ + Sbjct: 461 ELQRILFEKLGIKPIKKTKTGYSTDSESLQMLAQKYEIAQLIITYR-AISKVISTYIRPF 519 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 ++ M+ RL T +Q +T +S+P Sbjct: 520 LDKMDKSNRLHTT-------------------------------FNQTLTSTGRLSSSNP 548 Query: 355 DPLQIISDC------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + + + +R V+A +G KL+ +D + IE RVLA M+ ++ ++ F+ ED+ Sbjct: 549 NLQNLPAGDDELHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDI 608 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + T + F V P+ V R + K + + Y G + ++ T ++ + ++ Sbjct: 609 HTQTAVKIFGVHPSMVDHHLRRMAKTINFGIIYGMG---YVSLSKTLNISKDKARQFIE- 664 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 + R + + + + Sbjct: 665 -------------------------------------------KYFERFAGVKSYIENTT 681 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 E+ +NG Y GR + ++ +N L ++ Sbjct: 682 EKATKNG----------FVETYF-------------GRRRYFFNINSNNKRLAQFEKRA- 717 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNA 644 +Q + DI+ M+ IVL VHDE++ E + N Sbjct: 718 --------AVNATIQGTAADIIKIAMVKLYEKLKNLDAHIVLQVHDELLVEAKEDIAENV 769 Query: 645 SMLYH 649 + + Sbjct: 770 AGIVK 774 >gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] Length = 885 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 104/662 (15%), Positives = 204/662 (30%), Gaps = 156/662 (23%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 F ELW ++ + L E L N V + + L + + Sbjct: 341 CGFAI-GTDKELWVSDDVELLREPALSEILANQKVVVNVFDGKRTYVGLHR-LGVTLNSI 398 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 + L + ++ A + + ++ E+ K R P Sbjct: 399 NYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAK---------RAVPAKD 449 Query: 152 EAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWY--------LDQTINDRGYCVDV 201 K DV R + + L +++++ +L++ + + G VD Sbjct: 450 VLLEHLAH--KIDVIGELGRRLQEEL--INNQQADLYWKIELPLSIVLAKMEISGIKVDR 505 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 + + ++L+ ++ G + ++L LF + + T+T Sbjct: 506 ERLGAMQSELTERLSELESQIHQEA-GEEFNINSPKQLGHILFEKLEFPVIKKTKTGYST 564 Query: 262 ---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 VL + +P + + R A + ++ ++ + Sbjct: 565 AVNVLEKLRGYSPIIDHILDYRTIAKIKSTY--------VDGLLKVIHSTDQ-------- 608 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-E 372 + H Q +T ++DP+ I +R + S E Sbjct: 609 ---------------KVHTTYQQTLTQTGRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHE 653 Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAI 431 G ++ +D + IE RVLA + G+ +AF+ ED++ +T R F ++VT + R Sbjct: 654 GWHILSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQ 713 Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491 K + + Y + G++ + T + + + E Sbjct: 714 AKAVNFGIVYGISDYGLSQ---NIGISRKDAKRFIDT------YFKEYPGVKKYVDGSVE 764 Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551 A E ++ T IA +RR +P ++ Sbjct: 765 TAREKGYVET-------------------------------------IAHRRRYLPDIHA 787 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 S RS R+ +NT +Q + DI+ Sbjct: 788 SNF---------SVRSFA------ERTAMNTP------------------IQGSAADIIK 814 Query: 612 EGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664 M+N ++L VHDE++ E PD + L +M S +PLK Sbjct: 815 IAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLK 872 Query: 665 AE 666 E Sbjct: 873 VE 874 >gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] Length = 833 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 81/506 (16%), Positives = 156/506 (30%), Gaps = 127/506 (25%) Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 + L E+ L + RG VD ++ + + + L ++ L G+ + Sbjct: 437 EVLSVYEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELA-GMEFN 495 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++L LF L + T VL + + R + + Sbjct: 496 LNSPKQLAEVLFDHLKLPTKKKRSTAV-DVLEGLIEEHAIIAPILEYR-KYQKLYSTYAV 553 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 L + +++DG++ H +Q T +S Sbjct: 554 GLTKHIHADGKI-------------------------------HTSFNQHATQTGRLSSS 582 Query: 353 DPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 DP+ I + +R +ASEG L+ D + IE RVL+++A E+ ++AF G D Sbjct: 583 DPNLQNISVRDEETRMIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHD 642 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T F V VT R K + + Y ++ + + H + Sbjct: 643 IHSETAKAIFGV--DDVTSTMRRQAKSVNFGIVYGMSEY---GLSKQLDITIPEARHFIT 697 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + ++ E + D ++ T Sbjct: 698 ------RYNEIYPNITKYMDSVVEDCLRDGYVKTLFN----------------------- 728 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 +RR +P +Y + R+ +N Sbjct: 729 --------------RRRYIPEIY---------------DANRAVKDFGKRAAMNAP---- 755 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCET-PDTD 640 +Q + DI+ M+ A + ++L VHDE+V + D Sbjct: 756 --------------IQGTAADIIKIAMIKADELLTSNNYKSSMILQVHDELVFDVYDDEL 801 Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAE 666 E ++ +M SW L + + Sbjct: 802 EQIQDLMVSVMEHIVSWPIDLNVSVD 827 >gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] Length = 420 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 77/488 (15%), Positives = 143/488 (29%), Gaps = 119/488 (24%) Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L E + RG VD + +L + + G + Sbjct: 17 LSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEA-GEEFNIN 75 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF L T+T VL + L P + R + Sbjct: 76 SPKQLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTY-- 133 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 A + G R H + +Q IT + Sbjct: 134 ---------------------ADGLANYIGDD---------ERIHGKFNQTITATGRISS 163 Query: 352 SDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 ++P+ I + +R + EG V AD + IE RVLA ++ ++ + A+E + Sbjct: 164 TEPNLQNIPARVELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQ 223 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T + F V QV+ QR K + + Y A + + + Sbjct: 224 DIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQ---DLKITRKQAQEYI 280 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++ + + E E+ F+ T +R++ K S + Sbjct: 281 D------KYFETYPKVKKYLNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQ------- 327 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 R+ G R +N+ + Sbjct: 328 --------------------------------------------RNFGE-RVAMNSPIQ- 341 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 G + I A+ R M + K ++L +HDE++ E D++ Sbjct: 342 --------GSAADIIKIAMIR----VNMELKKRKLKSRLILQIHDELLIEAHDSE---VE 386 Query: 646 MLYHLMTS 653 + ++T Sbjct: 387 EVKGILTR 394 >gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] Length = 222 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 108/272 (39%), Gaps = 63/272 (23%) Query: 416 SFNVAPAQ--VTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAP 472 FNVA + V R GK+ ELALGY G A + M + G+ Sbjct: 1 MFNVAVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEELQ--------- 51 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + AWRQ +S +++LW ++ +A + + Sbjct: 52 --------------------------------PLVTAWRQSNSNITKLWWDVDRAVKVCV 79 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRSYLN-TT 583 + + + L ++LPSGR L Y G + +Y Sbjct: 80 KQKTP------TETHGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGG 133 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 T++ R +YG K ENIV A+SRDIL M IV VHDEI+ E F+ Sbjct: 134 TKKWERIESYGPKFVENIVHAISRDILYHAMQTLKN--CSIVAHVHDEIIIEADMRMSFS 191 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 A + M PSWA GL L A+GYE + Y+K Sbjct: 192 A--ICEQMARTPSWANGLLLSADGYECQFYQK 221 >gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 888 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 109/633 (17%), Positives = 177/633 (27%), Gaps = 157/633 (24%) Query: 54 PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 P L EA L + + V HN+ ++ I LA Sbjct: 359 PSELDEADERALTAWLADPERPKVFHNAK---GAMRVFAEHGWTIEGVTMDTALAAYLVK 415 Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGD 164 P +AL L + L + + EA L D Sbjct: 416 PGRRSFDLDALSL--------EYLHRELAPAAAPDGQLAFGADDGAEAEALMVQARAILD 467 Query: 165 V-------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 + L E L + G D + Q+ + Sbjct: 468 LGEAFEGRLAEVGAADLLR---DMELPTSALLARMERHGIAADREHLQAMEQMFAGAVQQ 524 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAI 274 +E + G + ++L+ LF E L T+T L+ T + Sbjct: 525 AVKEAHA-AAGHEFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLATQTDNEL 583 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 V R R + + L++ + +DGR+ T Sbjct: 584 PVIMLRHREQAKLRVTVEGLIKTIAADGRIHTT--------------------------- 616 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARV 388 +Q + ++DP+ I +R + EG + L+ AD + IE RV Sbjct: 617 ----FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIELRV 672 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 +A ++ + +AF +GEDL+ T A+ F+V + V + R K M L Y A Sbjct: 673 MAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGLSAFGL 732 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 + + L Sbjct: 733 SQ---QLNIEAAEARAL------------------------------------------- 746 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 R + + L + ++ G RR LP Sbjct: 747 -MDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRY---------------LP----- 785 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------Y 622 LN+ RQ RE L I Q + DI+ M+N +A Sbjct: 786 ----------DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKIAMLNVDRALREADLRS 833 Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654 ++L VHDEIV E + L M++ Sbjct: 834 RMLLQVHDEIVLELAPGERAAVEELVRREMSTA 866 >gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock] Length = 595 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 117/566 (20%), Positives = 192/566 (33%), Gaps = 92/566 (16%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIV 69 +D G+ Y++ L FG D PVEL D + V ++ AL +V Sbjct: 40 VDTETTGLDIYSDTFECRLVQFGTQDEAWVVPVELGDVFIEDV--RIAIGALR----KVV 93 Query: 70 AHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLS-------- 119 N+ ++ VL CF +++ R + T +LA+ P +A G L Sbjct: 94 LQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVD-PRPFEAGGFGHSLEELIAEFIS 152 Query: 120 SQKMEEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 ++ E K+L+A+ + H E + +Y D T + K L P Sbjct: 153 KEQAETVKKLMAKLAQEHKTTKAKIWATIDLFHPE----YLKYAGMDTIFTARVCKALTP 208 Query: 178 LSSK--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L E E+ + I+ +G+ +DV A L+ ++ E + T Sbjct: 209 LVPDVSRGLVAYEHEISEICSYIDRQGFLLDVEYAQELSDKWLADQQVW--EAIAFTEYG 266 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLTPQAIQVFNNRMRASR 285 V E L L E G+ + TET + +L + + + + Sbjct: 267 VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQVDKTLLEKLVAEGNELATIAQEAKKLGK 325 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + ++ +++ R + L A RT R S P Q LP Sbjct: 326 WRKTWVQKFLDTRDAEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASD------------ 372 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 VR C +A EG + D E RVLA ++ +Q ++AF+TG Sbjct: 373 ----------------STVRRCFLAEEGDVMASIDYQTQELRVLAALSNDQTMIEAFKTG 416 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 DL+ T AQVT R +GK+ Y GGAK + A Sbjct: 417 ADLHQMTA------DAAQVT---RKVGKMANFLTVYGGGAKTLAEQAKV---------DF 458 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + + + A +I T R SR N + Sbjct: 459 PTAKRTLDAFARTYPGVARLSKKLGTEAGRKGYIVTPVGR---RLPVDSSRSYSALNYMV 515 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYM 551 Q+ + + I K P + + Sbjct: 516 QSSSRDVTCRALIRLHKAGYTPYLRL 541 >gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] Length = 924 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 74/416 (17%), Positives = 136/416 (32%), Gaps = 56/416 (13%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 V RE L+ + L + + G +D + L + + ++ Q++ Sbjct: 512 EVERE--DTLKVYEQIDLPLAPVLLAMEQHGVRIDSEMLRALGDRLAADMHRVSQQIYEQ 569 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280 G + ++L LF + L + +T Q VL V R Sbjct: 570 A-GHRFNINSPKQLGDVLFNKMNLPRPLKYGKGKVISTAQDVLEELAAHNDVPRLVLEFR 628 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 A + P + R H Sbjct: 629 QLA-------------------------------KLKSNYVDSLPLLADSQ-GRVHTTFH 656 Query: 341 QIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q+ T +++P+ I + +R+ IA+ G+KL+ AD + IE R++A + + Sbjct: 657 QVGTATGRLSSTNPNLQNIPVRTALGREIRAAFIAAPGRKLLSADYSQIELRLMAHFSED 716 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 L A+ TG+D++ T + F VAP + K+ R K + + Y +A Sbjct: 717 PLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNFGIVYGISPF---GLAQQL 773 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G++ + + T A R + E + + T RV+ S Sbjct: 774 GIDQHEARQYIDTYFARY------QGVRAYIDRVLEQTRREQRVRTLFGRVRP-IPDIQS 826 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVY 570 R + + T G A K + + K KN ++ L L++ Sbjct: 827 RNANQRGFAERTAVNTPLQGTAADLIKLAMIRIDARIKKKNLQTLMTLQVHDELLF 882 >gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] Length = 894 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 104/628 (16%), Positives = 191/628 (30%), Gaps = 147/628 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGEAL 116 L + + V H LKA + + + ++ P L + + Sbjct: 378 LRDPESPKVLHGFK---AALKALTARGLELEGVVDDTSISGYLIQPDRRTYELAELAQHH 434 Query: 117 ---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173 + + + G +L F +T A F E R + Sbjct: 435 LNVGMPAATAKAG-QLELSFDGNDTAAAEALVQAAAVVSALSRFFETE----LKERRAEE 489 Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L L E + + + G +D+ + + ++ + G + Sbjct: 490 LLSTL---ELPVSRVLADMELAGIGIDLDRMDEQLADLARVIDQAQEQAFA-AIGHEVNL 545 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--- 290 ++L+T LF E L ++ +S K L + F ++ A R A Sbjct: 546 GSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLEKTGHEFLVQLMAHREAAKLRQM 605 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + +L +++ DGR+ T Q + Sbjct: 606 IESLKKSVAEDGRIHTT-------------------------------YAQNVAATGRIS 634 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404 +++P+ I VR + S+G + L+ AD + IE R++A ++G+ ++A++ Sbjct: 635 SNNPNLQNIPIRSEEGRRVRGIFVVSDGYECLLSADYSQIEMRIMAHLSGDAGLIQAYKD 694 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ + F+V QVT R+ K M L Y + ++ ++++ Sbjct: 695 GEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSF---GLSKQLEISVDEART 751 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 L+K R + + L Sbjct: 752 LMK--------------------------------------------DYFDRFGAVRDYL 767 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +Q +G RR LP L +T Sbjct: 768 RGVVDQARVDGYTSTIEGRRRY---------------LP---------------DLTSTD 797 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPD 638 RQL RE L I Q + DI+ M+ ++L VHDE+V E Sbjct: 798 RQL-RENAERIALNSPI-QGSAADIIKRAMLGVHAELQAQGLKSRMLLQVHDELVLEVAP 855 Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKA 665 + L M + +PL+ Sbjct: 856 GERAAVEALVTEQMAAAAD--LSVPLEV 881 >gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1] Length = 537 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 105/632 (16%), Positives = 183/632 (28%), Gaps = 140/632 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGE 114 L + L + DV AH+ VL A + + LA P Sbjct: 10 LGDWLADADVPKAAHDVK---AVLHALRSRGWSLAGLTSDTALAAYLARPGQRTFDLADL 66 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 AL+ +++ + + + + A E + Sbjct: 67 ALRYLRRELRTEEPADGQLSLLGGADEADAQAAQQEMLAASAIAELADA-LDTELAERGG 125 Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E L+ E L ++ G VD L + + Q + G + Sbjct: 126 TELLADLELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVI-GKEINLG 184 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKL 291 ++L+ LF E + T+T + + L Q F + R A + + Sbjct: 185 SPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLYEQTGHEFLQFLLQHRDATRLKVTV 244 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 + L++++ DGR+ T Q I + Sbjct: 245 DGLIKSVADDGRIHTT-------------------------------YSQTIAATGRLSS 273 Query: 352 SDPDPLQII-----SDCVRSCVIASEG------KKLVVADLAGIEARVLAWMAGEQWKLK 400 +DP+ + +R + G +L+ AD + IE R++A ++ ++ ++ Sbjct: 274 TDPNLQNVPIRTAAGRRIRDAFVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIE 333 Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 AF + D + T AR F V A V+ +QRA K M L Y A + Sbjct: 334 AFRSQHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGLAYGLSAYGLSGQLRIS----- 388 Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520 + K + + Sbjct: 389 ------------------------------------------TDEAKGLMDDYFAGFGGV 406 Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580 + L +Q ++G RR LP L Sbjct: 407 RDYLAGVVDQARKDGYTATILGRRRY---------------LP---------------DL 436 Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVC 634 + RQ RE L I Q + DI+ M+ +A ++L VHDE+V Sbjct: 437 TSDNRQ-RREMAERMALNAPI-QGSAADIIKVAMLGVRRALSAEGLRSRMLLQVHDELVL 494 Query: 635 ETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665 E D + L M + +PL+ Sbjct: 495 EVADGERETCEALVRREMAAAAD--LSVPLEV 524 >gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e] gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e] Length = 306 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 123/285 (43%), Gaps = 45/285 (15%) Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ--------- 486 EL LGY+GG AF A GL+L A + W W + Sbjct: 22 ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 81 Query: 487 ---ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-------- 535 ++ I D + C+ +K+ WR+ H W +L + N Sbjct: 82 PGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAGA 141 Query: 536 -------KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS---------- 578 +AI + + K L + LPSGR L Y +G + + Sbjct: 142 HLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRIN 201 Query: 579 --------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 N TRQ T YT+GGK ENIVQA+ RD+LA M+N GY IVL+VHD Sbjct: 202 TNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVHD 261 Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 E+VCETPDT ++ + L LM + P WA G PL AEG E KRY K Sbjct: 262 ELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306 >gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] Length = 895 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 101/677 (14%), Positives = 204/677 (30%), Gaps = 166/677 (24%) Query: 5 FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64 D ET S L ++ F+F + H+ + + Sbjct: 333 SFDTETTS---LE-------VRSAKIVGFSFSVNGVDSYYVPIAHNYLGVEEQVSYECAK 382 Query: 65 DVTIV--------AHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAVGEA 115 + HN ++ +LK F+ + + +++LA + Sbjct: 383 EFIEYIFGCKYVIGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLLQSDALCNLDFLM 442 Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 K + +M K+++ + K + L + EY D +++ +L Sbjct: 443 KKYFNHEMIHYKDIVHK--KENFSQILI-----------QYACEYASEDAAACYQLYFKL 489 Query: 176 EPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + L + E + G +D+ L ++ +E+ +L Sbjct: 490 KGLVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELILESRERLHQISEEIFALA 549 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + ++L T LF E L T++ T + VL+S P ++ R Sbjct: 550 -NKRFNLNSPQQLATILFEELNLQAGKKTKSGFSTSESVLNSLYDTHPIIPKILEYR-EF 607 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + L E +D Q R + Q Sbjct: 608 FKLYSTYIEPLSEHAKAD------------------------LQ-----HRIYTSFMQTG 638 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T + +P+ I +R IA E LV D + IE R+LA + ++ Sbjct: 639 TSTGRLSSKNPNLQNIPVKTAQGRRIRRGFIAKENHLLVSLDYSQIELRLLAHFSEDEAM 698 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF D+++ T + F + +++RAI K + G+ Sbjct: 699 IEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSIN--------------FGLIYGMG 741 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + +K +++A+ + + + V Sbjct: 742 PKKLSETLKIT-----FQEAKTYIQ-------------------------NYFTSFPTVK 771 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 E + + K ++ R R+ + K + R Sbjct: 772 EFLKNQEEFILEN-GYSKTLLGRMRKFDFEGVQEYQKAAFL-----------------RE 813 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCET 636 +N I Q + DI+ M TKA + ++L VHDE++ E Sbjct: 814 GINA------------------IFQGSAADIIKMAMNAITKANLESKLLLQVHDELIFEA 855 Query: 637 P-DTDEFNASMLYHLMT 652 P + + + + +M Sbjct: 856 PKEIAKKESEEIAKIME 872 >gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] Length = 886 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 97/542 (17%), Positives = 159/542 (29%), Gaps = 132/542 (24%) Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKR------LEPL-SSKEQELWYLDQTINDR 195 D P EA L V RE +R L L + E L + + Sbjct: 443 LDDRGPLEAEAAPLGARQWVEVVHPIREALERRLTEDDLWRLATDVEIPLTRVLTDMEIH 502 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G +D + + + ER + E+ G + + +L LF GL T Sbjct: 503 GVAIDRDVLAAIGTELATERDRALAEVRHYAGGEL-NPNSPRQLAVVLFERLGLPAGRKT 561 Query: 256 ETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 +T RVL S + P + R + L + +DGR+ T Sbjct: 562 KTGYSTDARVLESLRDAHPIVAAILRFRELDKLLST-FYEGLRSEIGADGRIHATF---- 616 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 +Q + + P+ I R Sbjct: 617 ---------------------------NQAVARTGRISSERPNLQNIPVRTDEGKRFRDA 649 Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427 +A+EG LV AD + IE RVLA ++G++ ++ D++ AR F V +VT Sbjct: 650 FVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHTLVAARVFGVPAERVTPQ 709 Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487 QR++ K++ L Y A +A G+ Sbjct: 710 QRSVAKMVTYGLSYGMEAY---GLAQRLGVPPAEA------------------------- 741 Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547 E + + L + + + G RR Sbjct: 742 ----------------EGILADFFAAFP---GLRHYRDASVDAARAQGFTTTLLGRRRY- 781 Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607 LP S T + R+ G Q ++ Sbjct: 782 --------------LPDLDSPNR-----------TVRQGAERQAMNAG------TQGLAA 810 Query: 608 DILAEGMMNATKAGYD----IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPL 663 DI ++ A +VL VHDE+V E + L + + ++A +PL Sbjct: 811 DIFKIALVRLHAALSPTDGALVLQVHDEVVVEAVAERAHDVRALVEDVLEH-AFALRVPL 869 Query: 664 KA 665 + Sbjct: 870 RV 871 >gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] Length = 912 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 111/654 (16%), Positives = 183/654 (27%), Gaps = 137/654 (20%) Query: 38 DDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94 D D ++P+ L L +TD + ++ L A + + I Sbjct: 359 DGSRAVAIDLT--EILPEDEAVLARFLSDTDRPKLVADAKGSWHALSA---RGLTLDGVI 413 Query: 95 CTLVLARSNGLPSALKAVGEAL-----KLSSQKMEEGKELIARFCKGET-----HECLYD 144 LA P E L + ++E D Sbjct: 414 ADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVDESGAQANDGPGESQSAFDLEALTSD 473 Query: 145 RNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202 H + R V + + + E + + D G VD A Sbjct: 474 AVPATHMASARRAAVLLPLQVVLDEQMAARDAVGLFTDLEMPVAATLTVMEDAGIAVDDA 533 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 + +D R E G + ++L+ LF E + T+T Sbjct: 534 VLAARETELDA-RVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTD 592 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319 + L + F + R A+ + L +A+ +DGR+ T Sbjct: 593 ADALAGLYAKTSHPFLEHLLEHRDAIKLRQTVEGLRKAIQADGRIHTT------------ 640 Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGK 374 Q I ++DP+ I + +R EG Sbjct: 641 -------------------FQQTIAATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGY 681 Query: 375 K-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433 L+ AD + IE R++A ++G+Q ++AF +GEDL+ A + VT QR+ K Sbjct: 682 DCLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIEVGDVTAQQRSHVK 741 Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493 M L Y +A G++ A L A E+ E A Sbjct: 742 AMSYGLAYGLSTF---GLARQLGIDNAEAADLRNAYFAR------FGKVHDYLESVVEQA 792 Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553 D + T R ++ S + +A G A K+ + + Sbjct: 793 RRDGYTETMFGR-RRYLPDLTSDNRQRREMAERAALNAPIQGSAADIVKKAMIDVD---- 847 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 G LTE Q +S IL Sbjct: 848 -----------------------------------------GALTE---QGLSSRIL--- 860 Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666 L +HDE++ E + +L M +PL Sbjct: 861 ------------LQIHDELLIEVAPGEAAAVESLLKEQMGGAAE--LSVPLDVA 900 >gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 885 Score = 216 bits (550), Expect = 8e-54, Method: Composition-based stats. Identities = 100/640 (15%), Positives = 195/640 (30%), Gaps = 144/640 (22%) Query: 33 FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92 A + + + K+ E+ ++ + HN + L N DI I Sbjct: 341 IAIKVQNEATCIIKIDCKEDI-LKFKDVFEDENIEKLGHNLKEDMITL---LNFDINIKN 396 Query: 93 WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152 + +A L + +++ + + + Sbjct: 397 YTHDSEIAEYI-----LNSTESNYDINNISNTYFSRGYKDLEELLGKGKKKIKFSDLKYD 451 Query: 153 AWRLFGEYCKGDVTVTREIF-KRLEPLS------SKEQELWYLDQTINDRGYCVDVALAH 205 + + V R++ +++ E L + ++ G D A+ Sbjct: 452 ELCKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIGIRTDNAILD 511 Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR---V 262 + +D + L+ ++ G + +KL LF + G + T+T V Sbjct: 512 EIGIDLDNKILNLENDIYEKA-GEEFNINSPKKLGLILFDKLGYPVLKKTKTGYSTNADV 570 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 L KK V R + ++ + L E +N Sbjct: 571 LEKLKKDGDIIDDVLEYR-KLAKLKSTYVEGLKELINV---------------------- 607 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLV 377 H +Q IT +++P+ I +R ++SEG LV Sbjct: 608 --------ATGHIHSHFNQTITSTGRISSTNPNLQNIPIKTDEGKLIRKAFLSSEGCVLV 659 Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437 AD + IE RVLA ++ ++ + AFE +D++ T A+ F V VT R+ K + Sbjct: 660 DADYSQIELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNF 719 Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497 + Y S GL+ N N + ++ + + E++ Sbjct: 720 GIVYG---------ISDYGLSQN-------LNIPRKLAQEYIENYLLTYDGIKNYMTEEV 763 Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + VK I +RR +P + Sbjct: 764 KLAKKNGYVK------------------------------TILNRRRYIPEL-------- 785 Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617 S ++ R G R +NT +Q + DI+ M+ Sbjct: 786 ------SAKNFNIRSFGE-RIAINTP------------------IQGSAADIIKIAMVKV 820 Query: 618 TKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHLM 651 +A ++L +HDE++ + + + + LM Sbjct: 821 YRALKENNLKSKLILQIHDELIVDAREDE---VETVKKLM 857 >gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] Length = 867 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 88/490 (17%), Positives = 157/490 (32%), Gaps = 69/490 (14%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112 +VLK +E+ +V V H+ T L I I + +A S + + Sbjct: 364 KVLKNLMEDDNVKKVIHDGKNFVTFLNK---NQIEIKGFDFDTAIAAYLIDSSKSKYEIL 420 Query: 113 GEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 + EG + A C P E + D ++ Sbjct: 421 ELVNHYIGDNPNSEGSNIKAILCSY----------LPMVYEKLKENLHKENMD-----QL 465 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 + E L Y+ ++ G+ ++ + L E K +E+ L Sbjct: 466 YY------EVEHPLIYVLSSMESIGFNINQGMLDELQTKFKKEIDKTQKEIYELAD-EEF 518 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF + L + T+T Q VL ++ R ++ Sbjct: 519 NISSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLMNKHDIIPKIMYYRQITKINST 578 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + L ++ DGR+ + TGR S QN+P Sbjct: 579 Y-VEGLKNVVDEDGRIHSNFNQT-VTTTGRLSSTEPNLQNIPIKYE-------------- 622 Query: 349 SITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 + +R I E LV D + IE RVLA +AG++ + AFE D Sbjct: 623 -----------MGREIRKVFIPMEETDILVSCDYSQIELRVLAHIAGDENMIDAFEHHSD 671 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T + F V +VT R+ K + + Y A + + T + Sbjct: 672 IHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIVYGISAFSLAEDLKITKKEAEEY----- 726 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + E + + + EN + A E ++ T R ++ + S + + Sbjct: 727 MSIYLERYPKIKEYL----ENVVDEAKEKGYVLTILNR-RRFIPEIKSSNKIVKALGDRL 781 Query: 528 FEQTIENGKA 537 G A Sbjct: 782 AMNAPIQGSA 791 >gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B] Length = 862 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 106/634 (16%), Positives = 200/634 (31%), Gaps = 157/634 (24%) Query: 49 HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108 ++ + LK+ ENT + HN+ TVL LDI I+ ++ +A S Sbjct: 359 NEEKSKEYLKKLFENTS-EKIIHNAKNLFTVLSK---LDIDINNFVFDTEIAAYLIESSD 414 Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168 + + L + E +++ LY R K Sbjct: 415 KEYTLKTL-FETYLHETYQDISQEIS---NLSNLYQRLKEK----------------IKE 454 Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228 ++ L + E L + + G+ VD L + E T +E+ + G Sbjct: 455 LQMEDLLYKI---ELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQKEIYEMA-G 510 Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASR 285 + ++L LF + L + T+T VL K P ++ R Sbjct: 511 EEFNISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIDKITYYRQLTKL 570 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 ++ + L+ ++ DG R H +Q +T Sbjct: 571 NSTY-VEGLIHVIDQDG-------------------------------RIHSSFNQTVTT 598 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I +R + E ++ AD + IE RVLA MA ++ Sbjct: 599 TGRLSSTEPNLQNIPIKYEMGRAIRKVFVPNDEESLILSADYSQIELRVLAHMADDENMK 658 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 A+ D++ T + FN+ QVTK++R+ K + + Y G F ++ ++ Sbjct: 659 TAYLEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVY--GISDF-ALSEDLKISK 715 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 +A+ + +P+ +++ T + K+ + Sbjct: 716 K----------------EAKQYIDTYFSRYPK--VKEYISSTIAKAEKELYVN------- 750 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 I +RR +P + +R Sbjct: 751 ------------------TIFNRRRFIPEITSSNK---------------IVKALGDRLA 777 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633 +N +Q + DI+ M+N K ++L VHDEI+ Sbjct: 778 MNAP------------------IQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDEII 819 Query: 634 CETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 + L M S +PL+ + Sbjct: 820 LNVYKDELETVKELVKKEMESVID--FSVPLEVD 851 >gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] Length = 874 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 81/417 (19%), Positives = 151/417 (36%), Gaps = 56/417 (13%) Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 ++L L E L + + G+ +D +D + + G Sbjct: 470 QEKL--LYEIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVEYA-GYDF 526 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAV 288 + ++L LF++ GL + T+T VL + + P ++ R + S+ Sbjct: 527 NLNSPKQLGDVLFVKLGLPAKKKTKTGYSTNVDVLEALRPQHPIIGEILEYR-KLSKLKS 585 Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 ++ L++ + DGR+R T Q Q T Sbjct: 586 TYVDGLLKVVGPDGRVRSTFQ-------------------------------QTETRTGR 614 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403 +++P+ I +R A G KLV AD + IE RVLA +A +Q + AF+ Sbjct: 615 ISSTEPNLQNIPIRTEEGSRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAAFQ 674 Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 +GED++ TT A+ F + VT R+ K + + Y GA + + G+ ++ Sbjct: 675 SGEDIHATTAAQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGAFSLSQ---DIGVTVSEAD 731 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR-QKHSRVSELWN 522 +K+ A R E+ A E+ ++ T R + ++V++ + Sbjct: 732 SYIKSYLAHY------AGVRKYMEDTIAFARENGYVKTLFGRRRYLPELAASNKVTQAFG 785 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRS 578 + T G A K V + + + L+L L+ + Sbjct: 786 --ERVARNTPIQGTAADIIKIAMVRVFERLRREGLRARLILQVHDELLVEAPDDEID 840 Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 9/75 (12%) Query: 599 ENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLM 651 +Q + DI+ M+ ++L VHDE++ E PD + A ++L M Sbjct: 791 NTPIQGTAADIIKIAMVRVFERLRREGLRARLILQVHDELLVEAPDDEIDRARAILKEEM 850 Query: 652 TSNPSWAKGLPLKAE 666 A +PL+A+ Sbjct: 851 EHAI--ALKVPLEAD 863 >gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043] gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043] Length = 891 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 85/489 (17%), Positives = 154/489 (31%), Gaps = 116/489 (23%) Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E LS E L ++ + G VDV TL + + T+ Q+ G + Sbjct: 484 TELLSDIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVTQAQQDCWDAIGGDQINLG 543 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KL 291 ++L+ LF G+ T+T + +L + F + R A + Sbjct: 544 SPKQLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHPFLEALLRHRDAAKLRVTV 603 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L ++++ DGR+ T Q I + Sbjct: 604 EGLQKSVSDDGRIHTT-------------------------------YLQTIAATGRLSS 632 Query: 352 SDPDPLQII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 ++P+ + +R + +G L+ AD + IE RV+A ++G+ ++AF +G Sbjct: 633 TEPNLQNVPIRTEEGRRIRELFVVGDGYDALMSADYSQIEMRVMAHLSGDSGLIEAFRSG 692 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ ++ F VAP VT R+ K M L Y A ++ ++ L Sbjct: 693 EDLHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYGLSAY---GLSKQLAISTEEAKGL 749 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 ++ A R + L Sbjct: 750 MEGYFA--------------------------------------------RFGGVRAYLD 765 Query: 526 QAFEQTIENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 + + G A + +RR +P + N + +L G+ + Sbjct: 766 EVVAEARGTGFTATMFGRRRYLPDLT---SDNRQRREMAERMALNAPIQGSAADIMKVAM 822 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644 + R T G T ++Q VHDE+V E ++ + Sbjct: 823 IGVDRTLTEAGARTRILLQ------------------------VHDELVLEVAADEQADV 858 Query: 645 SMLY-HLMT 652 + M Sbjct: 859 ERIVREQMG 867 >gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074] gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074] Length = 908 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 178/617 (28%), Gaps = 148/617 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L D + HN+ V++ + LA P +AL L Sbjct: 395 LAAADRPKILHNAK---GVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEY 451 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-TVTREIFKRLE--- 176 G+EL T + EA V + +RLE Sbjct: 452 L----GRELA-----PATADGQLT--LGADDEAEAHALMVQARTVLDLGAAFGERLEQVG 500 Query: 177 ---PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L+ E L ++ G D + + + +E G + Sbjct: 501 ATGLLADVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAHD-AVGREFNL 559 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLK 290 ++L+ LF E L T+T + L Q V R R + Sbjct: 560 GSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVT 619 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++++ +DGR+ T +Q + Sbjct: 620 VEGLIKSIATDGRIHTT-------------------------------FNQTVAATGRLS 648 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404 +++P+ I +R + EG + L+ AD + IE RV+A ++ ++ ++AF + Sbjct: 649 STEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTS 708 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ T ++ F V V + R K M L Y A + ++ Sbjct: 709 GEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIDAGEARA 765 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 L+ T R + + L Sbjct: 766 LMDTYF--------------------------------------------ERFGGVRDYL 781 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 A ++ G RR LP LN+ Sbjct: 782 RHAVDEARATGYTETMLGRRRY---------------LP---------------DLNSDN 811 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638 RQ RE L I Q + DI+ M+ +A ++L VHDEIV E Sbjct: 812 RQ-RRETAERMALNAPI-QGTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAP 869 Query: 639 TDEFNASMLYHL-MTSN 654 + + M Sbjct: 870 GERERVEEIVRREMADA 886 >gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074] Length = 897 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 178/617 (28%), Gaps = 148/617 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L D + HN+ V++ + LA P +AL L Sbjct: 384 LAAADRPKILHNAK---GVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEY 440 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-TVTREIFKRLE--- 176 G+EL T + EA V + +RLE Sbjct: 441 L----GRELA-----PATADGQLT--LGADDEAEAHALMVQARTVLDLGAAFGERLEQVG 489 Query: 177 ---PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 L+ E L ++ G D + + + +E G + Sbjct: 490 ATGLLADVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAHD-AVGREFNL 548 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLK 290 ++L+ LF E L T+T + L Q V R R + Sbjct: 549 GSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVT 608 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++++ +DGR+ T +Q + Sbjct: 609 VEGLIKSIATDGRIHTT-------------------------------FNQTVAATGRLS 637 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404 +++P+ I +R + EG + L+ AD + IE RV+A ++ ++ ++AF + Sbjct: 638 STEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTS 697 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ T ++ F V V + R K M L Y A + ++ Sbjct: 698 GEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIDAGEARA 754 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 L+ T R + + L Sbjct: 755 LMDTYF--------------------------------------------ERFGGVRDYL 770 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 A ++ G RR LP LN+ Sbjct: 771 RHAVDEARATGYTETMLGRRRY---------------LP---------------DLNSDN 800 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638 RQ RE L I Q + DI+ M+ +A ++L VHDEIV E Sbjct: 801 RQ-RRETAERMALNAPI-QGTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAP 858 Query: 639 TDEFNASMLYHL-MTSN 654 + + M Sbjct: 859 GERERVEEIVRREMADA 875 >gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1] gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1] Length = 829 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 83/501 (16%), Positives = 160/501 (31%), Gaps = 130/501 (25%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L Y+ + RG L + ++ + ++++ ++ L G + ++L Sbjct: 437 EVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELA-GEKFNLNSPKQL 495 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKL----TPQAIQVFNNRMRASRSAVLKLNTLV 295 LF + GL T + + + L A+ + + R + S+ + L+ Sbjct: 496 SKVLFEKLGLKPVKKTRSGYSTDVETLTTLALEGHEIAVHILDYR-KLSKLLSSFVKALL 554 Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355 + ++ R H Q T +++P+ Sbjct: 555 KRIDE-------------------------------TGRVHGNFIQTGTATGRLSSAEPN 583 Query: 356 PLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 + +S VR V A EG LV AD + +E R+LA ++ ++ ++AF GED++ Sbjct: 584 LQNLPVSDPLSLRVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHT 643 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T F+ Q+T +R + K + + Y +A + L + Sbjct: 644 ETAKHLFHTR--QITDRERRVAKTVNFGIIYGMSP---HGLAERLSIPLQEAKDYI---- 694 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + + QK +V E + + + Sbjct: 695 -------------------------------------ERYFQKFPKVREF---IEETVRE 714 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 + G A RR LP + + Sbjct: 715 AYKKGFVETAFGRR---------------RPLPELKEKSFHKRSFGERA----------- 748 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNA-S 645 ++Q + DI+ M+N K I+L VHDE+V E P+ E + Sbjct: 749 ------AVNTVIQGTAADIMKMAMVNLQPEAEKLNSYIILQVHDELVLEAPEGAEEEVAA 802 Query: 646 MLYHLMTSNPSWAKGLPLKAE 666 + +M + +PL E Sbjct: 803 KVKQVMEGAAN--LSVPLTVE 821 >gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1] gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1] Length = 584 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 117/546 (21%), Positives = 197/546 (36%), Gaps = 103/546 (18%) Query: 2 ATLFIDFETR--SPIDLTKCGICKYAEDV---CVILFAFGFDDHPVELWDCVHDPVMPQV 56 LFID E S D+ D + L G + + ++D P + Sbjct: 23 KYLFIDTEVAVKSFEDI----------DFFNDKIRLIQIG-NYSKIFVYDMFRIPQFSEH 71 Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNL--DIPIHRWICTLVLARSNGLPSALKAVGE 114 LKE LEN V HN F+ LK F + I I + +L+ + +L A+ Sbjct: 72 LKELLENKGVI--GHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLSEDSREKHSLSALS- 128 Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174 +L+ +++ ++ K T E L Y DV V REIF Sbjct: 129 -YRLTDNHLDKSQQRSPWGIKNLTEEQLR----------------YAAKDVQVLREIFPV 171 Query: 175 L----------EPLSSKEQELWYLD--------------QTINDRGYCVDVALAHTLNQI 210 L + K E + LD I RG VD L + Q Sbjct: 172 LRDELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDMLQK 231 Query: 211 V--DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268 V D +R +D YG+ +K+ WL + GL L TT + LSS Sbjct: 232 VSTDYQREYIDFVRR---YGVD--PFSPQKVTNWLTSKLGLKLP----TTQKGSLSSQDS 282 Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 + I R + K+ ++ + + Sbjct: 283 ALRRYIDREEVRKLLHIRSEKKILDKLKEL----KAHLI--------------------- 317 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388 R + + QI + P+ LQ I+ +R EGKKL+VAD + IE R+ Sbjct: 318 ---NGRIYTQFKQIGAPTGRMASMRPN-LQNITRDLRVLFRPPEGKKLIVADYSQIELRI 373 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 A ++ +KAF G+DL+ T + Q+TKD+R + K + L Y ++ Sbjct: 374 AAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQMAKAINFGLIYGISPRSL 433 Query: 449 QKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 + A + G++++ + + E ++ +++ ++E EH ++ V Sbjct: 434 MEYARNSYGVDISLKDAQIFHSRFFEVYKGFKSWHDRVKEYLKEHNKMVVYTLLGRRMVV 493 Query: 508 KAWRQK 513 + + + Sbjct: 494 RRFTEA 499 >gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] Length = 901 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 97/648 (14%), Positives = 185/648 (28%), Gaps = 152/648 (23%) Query: 33 FAFGFDDHPVELW--DCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89 +A D P D L + L + V H +V + Sbjct: 354 WALAIADGPGSAVALDLTDLSAADDTALSDWLSDPTRAKVVHGGK---SVWHELASRGYS 410 Query: 90 IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147 + + LA P + A + +++ + + D + Sbjct: 411 LEGVVFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDT--------SSDQGALDLSV 462 Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY------LDQTINDRGYCVDV 201 E RL + + L S++ + + G +DV Sbjct: 463 GEDSEGGRLAVRAAAL-TDLAEVLRGELGDRSAEPLLTELELPLSAVLVHMERHGIAMDV 521 Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261 L Q T + G + ++L+ LF + + +T Sbjct: 522 DYLRELEQHFGELVTGAAASAYEVI-GREVNLGSPKQLQEVLFDQLDMPKTKKIKTGYTT 580 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318 ++ L + F + R + + L++++ DGR+ T Sbjct: 581 DAAALADLFVKTEHPFLKFLLDHRDSTRLRQTVEGLLKSVADDGRIHTT----------- 629 Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG 373 Q I +++P+ I +R + +G Sbjct: 630 --------------------FQQTIAATGRLSSTEPNLQNIPIRTEAGRRIRRAFVVGDG 669 Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432 L+ AD + IE R++A ++G++ ++AF TGEDL+ +R F V + VT R+ Sbjct: 670 YETLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKI 729 Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492 K M L Y + +++ +++ + L Sbjct: 730 KAMSYGLAYGLSSF---GLSNQLNIDVKEASKL--------------------------- 759 Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG-KAIIARKRRDVPLVYM 551 +R + L ++ NG A I +RR +P + Sbjct: 760 -----------------MEDYFTRFGGVRTYLAGVVDEARANGYTATIMGRRRYLPDL-- 800 Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611 T+ + RE L I Q + DI+ Sbjct: 801 ------------------------------TSDNRQRREMAERMALNAPI-QGSAADIIK 829 Query: 612 EGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652 M+ K ++L VHDE++ E + + L M Sbjct: 830 VAMLGVEKEIAVRGLRSRLLLQVHDELILEVGHGELEELTTLVREQMG 877 >gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] Length = 890 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ ++ + L+ L I + ++LA L Sbjct: 371 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + ++L Sbjct: 428 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 486 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 487 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 545 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 546 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 604 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 605 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 633 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 634 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 693 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 694 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 743 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 744 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 766 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 767 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 809 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 810 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 853 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + +++ +M +PL A+ Sbjct: 854 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 880 >gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] Length = 883 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ ++ + L+ L I + ++LA L Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + ++L Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + +++ +M +PL A+ Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873 >gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1] Length = 883 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ ++ + L+ L I + ++LA L Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + ++L Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + +++ +M +PL A+ Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873 >gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424] gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424] Length = 873 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 107/647 (16%), Positives = 207/647 (31%), Gaps = 162/647 (25%) Query: 62 ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL------------PS 107 ++ +V I + +++FE ++ D ++ + L +A+ NG+ S Sbjct: 338 KDENVYIFSEDNFFENKFVRNYLESDAEKVVYDYKKILYIAKRNGISDIAGNVFDVKIAS 397 Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167 L V +L +I + E + R P + + Y V Sbjct: 398 YLLDVTVKTELDKIVFNTLGNIIK--SEEEIYGKGVKRTLPTN----EILYPYLAQVVKS 451 Query: 168 TREIFK----RLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217 ++ + RL+ + E ++ + + G V ++ +D Sbjct: 452 IFDLKEIQSARLKEENMDSLYKNIEVKVARVLANMEYEGIHVSKKALEDMSDELDERIKI 511 Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAI 274 L+ + +L G + ++L LF + GL T+T VL + Sbjct: 512 LEASIHTLA-GSEFNIASPKQLGIVLFEDLGLPPVKKTKTGYSTSVEVLEQLQHSHEIIP 570 Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334 + R+ ++ + + + R + Sbjct: 571 LIMEYRVLTKLNSTYAKGLVKD--------------------------------ITRKGK 598 Query: 335 SHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVI-ASEGKKLVVADLAGIEARV 388 H +Q +T + +P+ I +R I AS+ + ++ D + IE RV Sbjct: 599 IHTRYEQTLTQTGRLSSVNPNLQNIPTRIEEGKKIRKAFIPASDDRVILSIDYSQIELRV 658 Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448 LA MA ++ + AF D++ T + V+ +VT R K + + Y Sbjct: 659 LAHMAQDKGMIDAFTHDLDIHTKTASEVNGVSLDEVTPTMRREAKAVNFGIVYGISDF-- 716 Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508 +++ G+ + ++ + + + E A E Sbjct: 717 -GLSNNLGITRKRAKEFID------KYLETFSGVNKYMTDIVEFAKE------------- 756 Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568 H V L+N +RR +P + KN ++ L Sbjct: 757 -----HGYVETLYN-------------------RRRALPEI---NAKNKIVASL------ 783 Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622 N R +NT +Q + DI+ M+NA TK Sbjct: 784 ------NARLAMNTP------------------IQGTAADIIKLAMINAFDYIEKTKVDA 819 Query: 623 DIVLTVHDEIVCET--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 ++L VHDE++ + DEF M+ +M + LKAE Sbjct: 820 KLLLQVHDELIFDVNKDVVDEFTIEMV-KIMEEAVE--LDVKLKAEA 863 >gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] Length = 883 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ ++ + L+ L I + ++LA L Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + ++L Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + +++ +M +PL A+ Sbjct: 847 ELDLIKTLVPKIMQQAAQ--LDVPLIADA 873 >gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] Length = 883 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 103/629 (16%), Positives = 203/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ ++ + L+ L I + ++LA L Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + ++L Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 + +L +M +PL A+ Sbjct: 847 ELDLIKILVPKIMQQAAQ--LDVPLIADA 873 >gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] Length = 883 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ ++ + L+ L I + ++LA L Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LGITLFNVTDDIMLASYIADSENNAGDLGVL 420 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + ++L Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 539 KQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + +++ +M +PL A+ Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873 >gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 909 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 105/601 (17%), Positives = 174/601 (28%), Gaps = 127/601 (21%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 + + V HN+ L+ I LA P +AL + Sbjct: 396 ISDPSRPKVMHNAK---DALRVFPEHGWEIAGVTMDTALAAYLVKPGRRSFALDALSIEY 452 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 +EL G+ ++ + + + + E +E L Sbjct: 453 LH----RELAPAAADGQLAFGTDEQAEADALMSQARAVLDLGEALGGKLEEVGAVELLHD 508 Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240 E L + G D A + Q + +E + G + ++L+ Sbjct: 509 VELPTSLLLARMERHGIAADRAHLEAMEQQFAGAVQQAVKEAHA-AVGHEFNLGSPKQLQ 567 Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 F E L T+T + L Q M R Sbjct: 568 EVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPVIMLRHR--------------E 613 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 RLR T++ G +T + R H Q + ++DP+ + Sbjct: 614 QARLRSTVE--GLIKT------------IAADGRIHTTFSQTVAATGRLSSTDPNLQNVP 659 Query: 361 -----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R + EG + L+ AD + IE RV+A ++ + ++AF +GEDL+ T + Sbjct: 660 VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDLGLIEAFTSGEDLHTTVAS 719 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 + F+V + V + R K M L Y A + G+ L+ T Sbjct: 720 QVFSVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEPAEARVLMDTYF---- 772 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 R + + L + ++ Sbjct: 773 ----------------------------------------ERFGGVRDYLRRVVDEARAT 792 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594 G RR LP LN+ RQ RE Sbjct: 793 GYTATMLGRRRY---------------LP---------------DLNSDNRQ-RRESAER 821 Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY 648 L I Q + DI+ M+N +A ++L VHDEIV E + L Sbjct: 822 MALNAPI-QGTAADIVKVAMLNVDRALTDAKLSSRLLLQVHDEIVLEVAPGEREQVETLV 880 Query: 649 H 649 Sbjct: 881 R 881 >gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1] gi|737486|prf||1922368A DNA polymerase I Length = 921 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 102/548 (18%), Positives = 165/548 (30%), Gaps = 139/548 (25%) Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------- 181 L A + RE W +T + + L PL Sbjct: 466 LYAYLLDPANTNMPVVAKRYLDRE-WPA---DAPTRAAITGHLVRELPPLLDDARRKMYD 521 Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E+ L + + RG VD TL+ V L+ ++ G R ++L Sbjct: 522 EMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYA-GEEFHIRSPKQL 580 Query: 240 KTWLFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294 +T L+ + L T+ T QR L + P V R Sbjct: 581 ETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFREL------------ 628 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 +LRGT P P R H Q + +P Sbjct: 629 -------DKLRGT------------YLDPIPNLVNPHTGRLHTTFAQTAVATGRLSSLNP 669 Query: 355 DPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + I + +R IA +G L+ AD + IE R+LA +A + +AF G D++ Sbjct: 670 NLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIH 729 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T A+ + A V +QR K + + Y A ++++ G+ Sbjct: 730 RRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSA---HRLSNDLGI------------ 774 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 + +A F +P I T + + H V L+ Sbjct: 775 ----PYAEAATFIEIYFATYP--GIRRYINHTL------DFGRTHGYVETLY-------- 814 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 +RR VP + + N R+ Sbjct: 815 -----------GRRRYVPGLSSR----------------------------NRVQREAEE 835 Query: 590 EYTYGGKLTENIVQAVSRDILAEGM----MNATKAGYDIVLTVHDEIVCETP-DTDEFNA 644 Y +Q + DI+ M G ++L VHDE++ E P D E A Sbjct: 836 RLAY-----NMPIQGTAADIMKLAMVQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVA 890 Query: 645 SMLYHLMT 652 ++ +M Sbjct: 891 ALTKKVME 898 >gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE] gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE] Length = 903 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 109/623 (17%), Positives = 178/623 (28%), Gaps = 137/623 (21%) Query: 54 PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 P L EA + + V HN+ L+ + LA Sbjct: 374 PAELDEADEQALAAWIADPRRPKVMHNAK---NALRVFPEQGWRLEGVSMDTALAAYLVK 430 Query: 106 PSALKAVGEALKLSSQKMEEGKELIAR-FCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 P +AL + G+EL G+ DR + + A Sbjct: 431 PGRRSFALDALAVEYL----GRELAPAPSADGQLAFGADDRAEADALMAQARAVLDLGEA 486 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 V E L E L + G D + + Q + +E + Sbjct: 487 FAVRLEEVGATGLLHDMELPTSILLARLERHGIAADRSHLEGMEQQFAGAVQQAVKEAHA 546 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284 G + ++L+ LF E L T+T + L Q M Sbjct: 547 -AVGREFNLGSPKQLQEVLFGELALPKTKKTKTGFTTDADALAWLAAQTEHELPVIMLRH 605 Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344 R T+ + + G + R H +Q + Sbjct: 606 REQAKLRVTVEGLIKTIG----------------------------QDGRIHTTFNQTVA 637 Query: 345 HLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWK 398 ++DP+ I +R + EG + L+ AD + IE RV+A ++ + Sbjct: 638 ATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGL 697 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 ++AF +GEDL+ T ++ F V + V + R K M L Y A + ++ Sbjct: 698 IEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNID 754 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 L+ T R Sbjct: 755 AGEARGLMDTYF--------------------------------------------QRFG 770 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + + LH+ E+ G RR LP Sbjct: 771 GVRDYLHRVVEEARATGYTETILGRRRY---------------LP--------------- 800 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632 LN+ RQ RE L I Q + DI+ M++ +A ++L VHDEI Sbjct: 801 DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLHVDRALTEARLTSRMLLQVHDEI 858 Query: 633 VCETPDTDEFNASMLYHL-MTSN 654 V E + + M++ Sbjct: 859 VLEIAAGEREQVEEILRREMSTA 881 >gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] Length = 880 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 90/507 (17%), Positives = 164/507 (32%), Gaps = 134/507 (26%) Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 DV R +L L+ E L + + +G VD+ + + + KL E+ Sbjct: 471 DVLTER---NQLSLLNDVELPLSDVLADMEYQGLTVDLKELENQTKDMSLRIDKLRTEIL 527 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFNNR 280 L G+ + ++L LF GL T+T VL++ P + R Sbjct: 528 LLA-GVDFNVDSPKQLGDVLFDTLGLPNGKKTKTGYSTGIEVLNNLIDHHPIINLIIEYR 586 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + L + E++ D R+ + Sbjct: 587 QLT-KLYSTYLIGIKESVFEDNRVHTI-------------------------------YN 614 Query: 341 QIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q +T + +P+ I +R I V AD + IE RVLA MA Sbjct: 615 QALTLTGRLSSLEPNLQNIPIRTEEGRQIRKLFIPEPDSYFVGADYSQIELRVLAAMADV 674 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 + +AFE +D++ T + F+V V +QR K + + Y G + + Sbjct: 675 KNLKQAFEEDQDIHTVTAQKVFHV--DTVDSEQRRRAKAVNFGIIYGIGPWSLSE---DI 729 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G+ + + + + E + + +++ + E + H Sbjct: 730 GVTVKEAENFI--SRYLEVYPEIKDYMTNIVEFA----------------------KTHG 765 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 V L N +RR +P + S + R+ G Sbjct: 766 YVETLLN-------------------RRRYIPEL--------------SSKVFNLREFG- 791 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629 R+ LN +Q + DI+ M++ K ++L VH Sbjct: 792 KRTSLNAP------------------IQGTAADIIKLAMIDLHNYLKDNKKKSKLILQVH 833 Query: 630 DEIVCET--PDTDEFNASMLYHLMTSN 654 DE++ E + DE ++ ++M Sbjct: 834 DELIVEVVKEELDEMK-EVIPNIMEKA 859 >gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] Length = 798 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 88/514 (17%), Positives = 161/514 (31%), Gaps = 135/514 (26%) Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 LE E + Y + + G D + + + E ++ +++++ G + Sbjct: 390 LLEVYLGMELPVAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKIKTF-VGYDINL 448 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP-------QAIQVFNNRMRASRS 286 ++L+ +LF E G+ T+T S + + P + R A Sbjct: 449 NSPKQLQVFLFEELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLL 508 Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346 + L L + + +DGR+ + Q T Sbjct: 509 STYALP-LKDYVLADGRIHSSF-------------------------------RQTGTAT 536 Query: 347 PTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 + +P+ I +R I EG V D + IE R+LA + G++ +A Sbjct: 537 GRLSSVNPNMQNIPMKGKWGVKLREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEA 596 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 + ED++ T + F VAP +V R + K + + Y ++ TG++ Sbjct: 597 YRNNEDIHTKTASGIFGVAPEKVDSGMRRLAKAVNFGILYGLSPF---GLSRDTGVSQKE 653 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + + + + +V Sbjct: 654 AK-----------------------------------------KFIEKYFATYPKVKGF- 671 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + + ++T E G A R+ R + RS Sbjct: 672 --IEKIAKETKEKGYAETLAGRK--------------------------RFIREIRSKNR 703 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD--IVLTVHDEIVCE 635 T + R T +Q + DI+ M+ YD +VL VHDE+V E Sbjct: 704 TVAMRGERIATNVP------MQGSAADIIKLAMVECQAVLDDKEYDALVVLQVHDELVFE 757 Query: 636 T--PDTDEFNASMLYHLMTSNPSWAKGLPLKAEG 667 D DEF+ + +M +PL G Sbjct: 758 VLDKDIDEFS-DRVRSIMEGVME--LDVPLVVNG 788 >gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] Length = 857 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 90/530 (16%), Positives = 168/530 (31%), Gaps = 80/530 (15%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94 + D V P+ L L+N DVT+ NS + + W Sbjct: 345 YAVQDTTVY-------PLEDADLVRLLDNADVTLDVFNSA-------PLYAKAMAAGGWG 390 Query: 95 CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154 ++V +G +A A K ++ + A F ++ +A Sbjct: 391 SSIVW---DGKLAAYLLDASASKYQISELIPAYKAAAAF------------TCTDYPDAG 435 Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 RL + + +T L + E L + + G VD + E Sbjct: 436 RLADLFARMKAEITACGEDAL--YNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREE 493 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQ 272 ++ + T + ++L LF GL T+ + + L P Sbjct: 494 LEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLREYPL 553 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 V R + + L++ + DG Sbjct: 554 VEDVLQYR-AYQKLNSTYVEGLLKVIGEDG------------------------------ 582 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVRSCVIASEGKKLVVADLAGIEAR 387 R H +Q + +P+ I + +R+ +A G LV AD + IE R Sbjct: 583 -RIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLVDADYSQIELR 641 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447 +LA + G++ +AF GED++ +T A+ + + ++VT R+ K + + Y GA + Sbjct: 642 ILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYS 701 Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 G+ + +K A A + A + ++ T R + Sbjct: 702 LS---KDIGVTVKEADAFLKNYLA------AFPSVSGYMDKTIADAKANGYVSTLFGR-R 751 Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557 + + S + + T G A K V + +D+ Sbjct: 752 RTLPELASTNFNVRASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKM 801 >gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 727 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 77/543 (14%), Positives = 176/543 (32%), Gaps = 63/543 (11%) Query: 51 PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-AL 109 + LK+ EN + + HN +++ VL+ I I + ++++ + Sbjct: 195 EEILSYLKKIFENEHLLKIGHNIKYDKLVLQRY---GIIIRGFEDIMLMSYVLDSGRYSH 251 Query: 110 KAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDRNKPNHREAWRLFGEY-----CKG 163 A K + KE++ + + R + E + + K Sbjct: 252 DIANIAKKWLFYDLITRKEMLKTGKRSISIDQISNSRIQEYVVEKSNVILQLWLLLRAKL 311 Query: 164 DVTVTREIFKRL-EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 +++RL +P+ + + G +D L ++ + + L++++ Sbjct: 312 IAEKLLHVYERLDKPMID-------IVAQMETTGIQIDRQLLAQVSSEISKDLLCLEEKI 364 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC-QRVLSSNKKLTPQAIQVFNNRM 281 +L G + ++L LF + T+ + +++ Sbjct: 365 HNLA-GEKFNISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQDLEQIN----------- 412 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 + + L++ S+ P R R H Sbjct: 413 ----------------CQDNILIEHILEWRRFSKIKSTYADSLPNHINQRTQRVHTFYSL 456 Query: 342 IITHLPTSITSDPDPLQ-----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 T + +P+ + +R IA KKL+ AD + IE R+LA +A Sbjct: 457 ASTMTGRLASLEPNLQNIPVKTNLGKKIRRAFIAPPTKKLISADYSQIELRILAHVAQIN 516 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 +AF+ D++ + F V +V+ R K + ++ Y ++A+ Sbjct: 517 PLYQAFKNSLDIHTLVASEIFGVKIEEVSSHMRQHAKTINFSIIYGISPF---RLANQLK 573 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 + + ++ + D E A ++ ++ T R + + + +S Sbjct: 574 IKRSEATDYIQ------RYFDRFPGIHEYIEKTKNFARKNSYVETIFGR-RIYYDEINSP 626 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVY-MKKDKNNLILMLPSGRSLVYRDVGN 575 + N +A G A +R + + ++ K + ++L LV+ Sbjct: 627 KVSIRNLNERAAINAPIQGSAADITRRAMILVHKSIECHKLSTKMLLQIHDELVFEAPEE 686 Query: 576 NRS 578 Sbjct: 687 EIE 689 >gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 957 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 94/520 (18%), Positives = 160/520 (30%), Gaps = 118/520 (22%) Query: 166 TVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215 ++ L P E + + + G +D A+ L++ Sbjct: 528 DAVLRLWTVLAPRLEGTPTQAVYEELELPMVPVLARMEAAGVRIDRAVLTELSRDFGATL 587 Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275 +L+ E+ L G +++ LF GL T + ++ + A Sbjct: 588 ARLETEIHEL-GGGPFQIGSPKQIGDVLFGRLGLPGGRRTPSGQWATGATILEELAAAGH 646 Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335 R+ R +T +A+ S R R Sbjct: 647 ALPGRLLDWRRTSKLKSTYADAL--------------LSAADRG------------TDRV 680 Query: 336 HEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLA 390 H T +SDP I +R+ +A+EG +++ AD + +E R+LA Sbjct: 681 HTTFSLAATTTGRLSSSDPGLHNIPIRTEEGRRIRAAFVAAEGHRILSADYSQVELRLLA 740 Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450 +A +AF G D++ T + F V V + R K + + Y A Sbjct: 741 HIADVPRMREAFAEGVDIHAATASDMFGVPVGAVPGELRRRAKTINFGIVYGISAF---G 797 Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510 +A G+ A F E P I D GT K Sbjct: 798 LADRLGIGRQEAAE----------------FIARYFERFP--GIRDYVEGT-----KTFC 834 Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570 R+ H V L+ + Y N+ S R Sbjct: 835 RE-HGFVRTLFGRVCH-----------------------YPGITSGNV-----SER---- 861 Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630 +G R +N + G + I +A+ R EG + + ++L VHD Sbjct: 862 --MGVERQAVNAPIQ---------GTAADIIRRAMIR---MEGALADSGLSARMLLQVHD 907 Query: 631 EIVCETPDTD-EFNASMLYHLM--TSNPSWAKGLPLKAEG 667 E+V E + + A ++ +M + P +PL E Sbjct: 908 ELVFEVAEAECADTARVVSDVMAGAAAPDIDLAVPLVVEA 947 >gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198] gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198] Length = 904 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 96/587 (16%), Positives = 182/587 (31%), Gaps = 93/587 (15%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------PVMPQVLKEALENT-DVT 67 D G+ A ++ F+F FD HD V + K A+E Sbjct: 344 DCETNGLD--ALQARLVGFSFCFDGIHGYYVPISHDYLGVGKQVDTKDAKRAIEKIFSHP 401 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 IV HN F+ + KA FNL P +++LA S + K +KM Sbjct: 402 IVGHNLKFDLMIAKANFNL-TPKREIQDSMLLAYLLDSASMMGLDILMEKFFGKKMIAYD 460 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------ 181 E++ + K EY D + +RL+ Sbjct: 461 EVVK-------------KGKTFGDVDLERASEYASEDAVACFCLQERLKEELQAKRCAHL 507 Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E + + +G +DV L + + ++ ++E+ + + Sbjct: 508 LELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLSEALSQKEEEIFAHAK-QNFNIN 566 Query: 235 CLEKLKTWLFLET---GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF + GL +T ++ L K P + R + Sbjct: 567 SPKQLSRVLFDDLKLRGLRRVKGGYSTDEKTLEELKDSHPIIPILMEYR-EIFKLKNTYA 625 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +++ + ++ + Q T + Sbjct: 626 EPILKLRTKENKIHTSFS-------------------------------QTGTTTGRLSS 654 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 P+ I +R IA GKKL+ D + IE R+LA + +Q L AF Sbjct: 655 RSPNLQNIPVRTEAGKQIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLDAFRKDL 714 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D+++ T F + K++R I K + L Y G +K++ T ++ + Sbjct: 715 DIHLRTAQMVFG----EDAKNKRHIAKTINFGLIYGMGT---RKLSQTLKISNTEAKEYI 767 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + R E + + T + + + + + Sbjct: 768 D------RYFASFPTVRQFLRTEEEQILRRGYAQTLLGHRRYFNFKGVGDF--MRSNFLR 819 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 I G A K + +Y + + ++L L+++ Sbjct: 820 EGINAIFQGSAADLMKL-SMNKIYQTFQNSGVKMLLQVHDELIFQSP 865 >gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] Length = 883 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L + LE+ ++ + L+ LDI + ++LA L Sbjct: 364 LNKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVL 420 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + ++L Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 539 KQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + +++ +M +PL A+ Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873 >gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29] gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29] Length = 607 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 112/584 (19%), Positives = 197/584 (33%), Gaps = 85/584 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHN 72 +D G+ Y+ D L FG + ++ + + EAL+ + V N Sbjct: 40 VDTETTGLDIYSADFRCRLVQFGTQTESW-VLPIEDLEMLGREEVHEALDVLNKI-VMQN 97 Query: 73 SYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGEALKLS--------SQK 122 + ++ VL CF + + + + T +LA+ P A G L ++ Sbjct: 98 ASYDLQVLDRCFGIKMESLWPKILDTQILAKLVD-PRPFGAGGFGHSLEELIAEFISKEQ 156 Query: 123 MEEGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180 E K L+A+ K + H E + Y D T I L PL Sbjct: 157 AENVKGLMAKLAKEHKTTKAKIWSTIDLYHPE----YLTYAGMDTVFTARICSALAPLVP 212 Query: 181 K--------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232 E ++ + I+ RG+ +DV + L E+ + L + + Sbjct: 213 DVSRPLVPYEHKISEICSYIDRRGFLLDVEYSQQLADKWLGEQQVWEAVLLNEYG--IEK 270 Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRSA- 287 E + F E G T++ ++V + + + A + Sbjct: 271 VNATEDVAE-AFEELGHKFTAFTDSGKRKVDKGFYADMIAAGGEKAHLAEMVQEAKKLGK 329 Query: 288 --VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + T ++ +S+ R + L A RT R S P Q LP + Sbjct: 330 WRTSWVQTFLDTRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASDWT---------- 378 Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 VR C +A G + D E RVLA ++G++ ++AF+ G Sbjct: 379 ------------------VRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQAFKDG 420 Query: 406 EDLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463 DL++ T +F +TKD +R K + Y GGA A TG+++ T Sbjct: 421 ADLHLMTARAAFG---DHITKDDPERKYAKTVNFGRVYGGGANTV---AEQTGISIETAK 474 Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523 +V ++ A A + +I R R SR N Sbjct: 475 QVVDG------FDKAYPGVTRYSRKLANEAKRNGYIINPMGRRLPVDR---SRTYSALNY 525 Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567 Q+ + + I + P + + + LP+ ++ Sbjct: 526 QIQSTSRDVTCKALIRLHEAGFTPYLRLPIHDEIVA-SLPAEKA 568 >gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653] gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653] Length = 477 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 92/488 (18%), Positives = 145/488 (29%), Gaps = 121/488 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 LS E L + G D + Q + +E + G + + Sbjct: 74 LSDVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHA-AVGHEFNLGSPK 132 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L+ LF E GL T+T + L Q M R Sbjct: 133 QLQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIMLRHR------------ 180 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 RLR T++ G +T + R H +Q + ++DP+ Sbjct: 181 --EQARLRSTVE--GLIKT------------ISPGGRIHTTFNQTVAATGRLSSTDPNLQ 224 Query: 358 QII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R + EG + L+ AD + IE RV+A ++ + ++AF +GEDL+ T Sbjct: 225 NIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTT 284 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 ++ F VA ++V + R K M L Y A G+ + Sbjct: 285 VASQVFGVAKSEVDPEMRRKIKAMSYGLAYGLSAFGLSG---QLGIGADEA--------- 332 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 ++ R + + L + E+ Sbjct: 333 -----------------------------------RRLMDTFFERFGGVRDYLQRVVEEA 357 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 G RR LP L + RQ RE Sbjct: 358 RAIGYTETMLGRRRY---------------LP---------------DLTSDNRQ-RREM 386 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645 L I Q + DI+ M+ A ++L VHDEIV E + Sbjct: 387 AERMALNAPI-QGTAADIVKIAMLKVDAALTAGELSSRMLLQVHDEIVLEIAPGERERVE 445 Query: 646 MLYHL-MT 652 L M Sbjct: 446 ELVRREMA 453 >gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] Length = 883 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L + LE+ ++ + L+ LDI + ++LA L Sbjct: 364 LNKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVL 420 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + ++L Sbjct: 421 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + +++ +M +PL A+ Sbjct: 847 ELDLIKTLVPKIMQQAAQ--LDVPLIADA 873 >gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] Length = 879 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 89/502 (17%), Positives = 156/502 (31%), Gaps = 125/502 (24%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E + G V A + + L ++ + G + + Sbjct: 476 LDDIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYA-AIGHEVNLGSPK 534 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L+ LF E L T++ ++ L A F + + R A KL +++A Sbjct: 535 QLQEVLFDELQLPKTRKTKSGYTTDAAALADLQESAPHPFLDLLLKHREAT-KLKQIIDA 593 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 ++ + TG R H Q + ++DP+ Sbjct: 594 LD--------------TATGP-------------DGRIHTTYVQTGSQTGRLSSTDPNLQ 626 Query: 358 QII-----SDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I S +R+ EG L+ AD + IE R++A ++G+ ++AF +GEDL+ Sbjct: 627 NIPIRTEESRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSGEDLHRF 686 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 AR F V PA+VT R K M L Y A ++ + + Sbjct: 687 VGARVFGVEPAEVTPAMRTKVKAMSYGLVYGLSAF---GLSKQLRIEQSEA--------- 734 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 KK + +R + + L + EQ Sbjct: 735 -----------------------------------KKLMLEYFARFGAVRDYLRGSVEQA 759 Query: 532 IENG-KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 ++G I +RR P + T+ ++ RE Sbjct: 760 RQDGYTETIFGRRRPFPDL--------------------------------TSMNRVLRE 787 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNA 644 L I Q + DI+ + + ++L +HDE+V E + Sbjct: 788 NAERAALNAPI-QGSAADIMKVALFRIREELASAGLRSRVLLQIHDELVVEIAPGEWDAV 846 Query: 645 SMLY-HLMTSNPSWAKGLPLKA 665 + M +PL Sbjct: 847 ERIVRARMADAAE--LSVPLDV 866 >gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] Length = 883 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 103/629 (16%), Positives = 206/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ ++ + L+ LDI + ++LA L Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNARDIGVL 420 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + +++ Sbjct: 421 ANSYQESYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVH 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL K +P + + R S+ +N Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLKYQSPIVDDILDYRQ-ISKIQSTYING 597 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTATGRLSSVE 626 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + +++ +M +PL A+ Sbjct: 847 ELDLIRTLVPEIMQQAAQ--LDVPLIADA 873 >gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2] gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2] Length = 604 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 106/568 (18%), Positives = 199/568 (35%), Gaps = 75/568 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74 D G+ Y++D L FG + + P + ++AL N V HN+ Sbjct: 41 DTETTGLDIYSDDFRCRLVQFGTPNEAW-VIPVELGPRYEEEARQALRNVK-GFVLHNAS 98 Query: 75 FERTVLKACFNLDI--PIHRWICTLVLARSNGLPSALKAVGEALKLSS--------QKME 124 ++ V++ + + + T +LA P K G KL E Sbjct: 99 YDLQVIERTLGIPMEDMWPKVTDTKILAHLVD-PRPFKEGGIGHKLEELVKHYIDANVAE 157 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--- 181 K L+A + + K + + Y D + + ++L PL Sbjct: 158 NVKTLMATLAREYKTTKAHIWTKVELTNPY--YQLYSGMDPILAARLLQKLIPLVPAVSQ 215 Query: 182 -----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 E +L + + RG+ +DV + L++ + ++ + + L + + Sbjct: 216 DLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADILYG--LENVNSP 273 Query: 237 EKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292 ++ L + G+ +++ TET +V L K + + + + Sbjct: 274 IQVAEAL-MRRGVKIKERTETGQPKVDKVLLDRLIKEGDPLAEAITEAKKWGKWEKTWVR 332 Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 +++ +S R + L A RT R S P Q LP Sbjct: 333 KFLDSRDSKDRCHANINPLQA-RTARMSITGIPAQTLPSGDW------------------ 373 Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 VR C +A EG+ + D E RVLA ++G++ ++AF+ G DL++ T Sbjct: 374 ----------LVRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAFKDGADLHLMT 423 Query: 413 YARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 ++ ++TKD +R K + Y GGA + +A TGL++ +V Sbjct: 424 ARAAW--PDREITKDSPERKYAKTVNFGRVYGGGA---KTVAEQTGLDMEAAKQVVDG-- 476 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 ++ A + + A ++ I T R SR N L Q+ + Sbjct: 477 ----FDRAYPGVQRLSAKLQREASQNGHIVTPKGR---RLPVDPSRAYSALNYLIQSTSR 529 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNL 558 + I + + + L Sbjct: 530 DVTGEALIRLHEAGFTKYLRLPIHDEIL 557 >gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] Length = 885 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 78/500 (15%), Positives = 140/500 (28%), Gaps = 132/500 (26%) Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243 L + + G +D L + + + L G + +++ L Sbjct: 490 PLVPVLAHMERIGALLDTDTLQALGSRTAQNIADISERIYELA-GEKFNIDSPQQVSHIL 548 Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300 F GL T +T +VL + R A ++ L + + Sbjct: 549 FDVIGLPPRKRTSRGYSTDAKVLEDLSSEHQLPGLILEYRELAKIMGTY-IDALPKLRGA 607 Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360 DGRL H ++ +T +S+P+ I Sbjct: 608 DGRL-------------------------------HTSFNETVTTTGRLSSSNPNLQNIP 636 Query: 361 -----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414 +R C I S V AD + IE R+LA ++G+ + AF +G D + T A Sbjct: 637 VRTEFGRHIRECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFHSATAA 696 Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474 R F V +VT + R+ K + + Y A + + + ++ Sbjct: 697 RVFGVPVEEVTPELRSRAKAVNFGIVYGQQAFGLSQ---SLRIPFGEAQAMIDRYFTAYP 753 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534 A L Q E Sbjct: 754 VVRA--------------------------------------------YLDNIVAQAHEK 769 Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTREYTY 593 G A+ R+ +P R+ + R +N Sbjct: 770 GYALTMFGRK---------------RHIPELRAHNAQQRAFGERIAMNHPM--------- 805 Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SM 646 Q + DI+ + M+ +++ VHDE+ P ++ Sbjct: 806 ---------QGTAADIIKKAMVEVDARLRHEFPNAKMMIQVHDELDLSVPADQVGEVSAL 856 Query: 647 LYHLMTSNPSWAKGLPLKAE 666 L +M + +PL + Sbjct: 857 LKEVMENVVE--LDVPLIVD 874 >gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1] Length = 880 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 108/630 (17%), Positives = 194/630 (30%), Gaps = 142/630 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114 L L++ + V H + LKA N + + + ++ P + Sbjct: 359 LARWLQDPEEAKVLHEFK---SALKALHNRGLGLEGVVDDTSISGYLIQPDRRSYDLAEL 415 Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171 A + + G+T E + L + K + + Sbjct: 416 AQVHLKISLAAAAAQSGQLELDLSGDTDEVAATALVQHAAVVHALSKHFEKELAEIKADA 475 Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231 L++ E + + + G V + ++ + G Sbjct: 476 L-----LTTLELPVARVLAQMELTGIFVSTDRMDEQLADLTKVIENAQEQAFA-AIGHEV 529 Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK- 290 + ++L+T LF E GL ++ +S K L + F ++ A R + Sbjct: 530 NLGSPKQLQTVLFDELGLPKTKKIKSGYTTDAASLKGLLEKTGHEFLVQLMAHRESSKLA 589 Query: 291 --LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 + TL +++ D R+ T Q I Sbjct: 590 QMVETLKKSVADDARIHTT-------------------------------YAQNIAATGR 618 Query: 349 SITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF 402 +++P+ I VRS + SEG + L+ AD + IE R++A ++G+Q ++A+ Sbjct: 619 ISSNNPNLQNIPVRSEEGRRVRSIFMVSEGYECLLSADYSQIEMRIMAHLSGDQALIQAY 678 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 + GEDL+ AR FNV PA+VT R+ K M L Y + ++ ++++ Sbjct: 679 KDGEDLHRFVGARIFNVEPAEVTSAMRSKVKAMSYGLAYGLTSF---GLSKQLEISVDEA 735 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 L + + R + Sbjct: 736 RTL--------------------------------------------MKDYYDRFGAVRA 751 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 L +Q +G RR LP T Sbjct: 752 YLDGVRDQARVDGYTATIEGRRRY---------------LPDL----------------T 780 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET 636 +T + RE L I Q + DI+ M+ + ++L VHDE+V E Sbjct: 781 STNRQAREAAERIALNSPI-QGSAADIIKRAMLGVSAELASQGLKSRMLLQVHDELVLEV 839 Query: 637 -PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 P E ++ M S +PL Sbjct: 840 APGEREAVEKLVIEQMGSAAE--LSVPLDV 867 >gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1] gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1] Length = 906 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 88/498 (17%), Positives = 147/498 (29%), Gaps = 129/498 (25%) Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 + L + E L + G D + Q + +E + Sbjct: 495 AEVGAAELLHEM---ELPTSELLARMERAGIAADRDHLEAMEQQFAGAVQQAVKEAHA-A 550 Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRA 283 G + ++L+ F E L T+T + L Q V R R Sbjct: 551 VGHEFNLGSPKQLQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHELPVIMLRHRE 610 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 + + LV+ + +DGR+ H QI+ Sbjct: 611 QAKLRVTVEGLVKTIGADGRV-------------------------------HTSFSQIV 639 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQW 397 ++DP+ + +R + EG + L+ AD + IE RV+A ++ ++ Sbjct: 640 AATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEG 699 Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457 ++AF +GEDL+ T ++ F V +V + R K M L Y A + + Sbjct: 700 LIEAFLSGEDLHTTVASQVFGVERGEVDPEMRRKIKAMSYGLAYGLSAFGLSQ---QLNI 756 Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517 + L++T R Sbjct: 757 DPGEARGLMETFF--------------------------------------------ERF 772 Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577 + + L + E+ G RR LP Sbjct: 773 GGVRDYLQRVVEEARATGYTQTVLGRRRY---------------LP-------------- 803 Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631 LN+ R + RE L I Q + DI+ M+ KA ++L VHDE Sbjct: 804 -DLNSDNR-MRREAAERMALNAPI-QGTAADIVKVAMLRVDKAITEAGLKSRMLLQVHDE 860 Query: 632 IVCETPDTDEFNASMLYH 649 IV E + L Sbjct: 861 IVLEIAPGERKKVEELVR 878 >gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder] Length = 604 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 105/570 (18%), Positives = 196/570 (34%), Gaps = 79/570 (13%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74 D G+ Y++ L FG + + P + ++AL N V HN+ Sbjct: 41 DTETTGLDIYSDGFRCRLVQFGTPNEAW-VIPVELGPRYEEEARQALRNVK-GFVLHNAS 98 Query: 75 FERTVLKACFNLDI--PIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--------ME 124 ++ V++ + + + T +LA P K G KL E Sbjct: 99 YDLQVIERTLGIPMEDMWPKVTDTKILAHLVD-PRPFKEGGIGHKLEELVKHYIDAPVAE 157 Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRL--FGEYCKGDVTVTREIFKRLEPLSSK- 181 K L+A + + K W + Y D + + ++L PL Sbjct: 158 NVKTLMATLAREYKTTKAHIWTK----VEWTNPYYQLYAGMDPILAARLLQKLIPLVPSV 213 Query: 182 -------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 E +L + + RG+ +DV + L++ + ++ + + L + + Sbjct: 214 SQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADILYG--LENVN 271 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNNRMRASRSAVLK 290 ++ L + G+ + + TE +V L K + + + + Sbjct: 272 SPIQVAEAL-MRRGVKITERTEGGQPKVDKVLLDRLIKEGDPLAEAISEAKKWGKWEKTW 330 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + +++ +S R ++ L A RT R S P Q LP Sbjct: 331 VRKFLDSRDSKDRCHASINPLQA-RTARMSITGIPAQTLPSGDW---------------- 373 Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 VR C +A EG+ + D E RVLA ++G++ ++AF G DL++ Sbjct: 374 ------------LVRRCFLADEGELMASVDYQAQELRVLAALSGDRTMIQAFRDGADLHL 421 Query: 411 TTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 T ++ ++TKD +R K + Y GGA + +A TGL++ +V Sbjct: 422 MTARAAW--PDREITKDSPERKYAKTVNFGRVYGGGA---KTVAEQTGLDMEAAKQVVDG 476 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 ++ A + + A + I T R SR N L Q+ Sbjct: 477 ------FDRAYPGVQKLSRKLQMEASQKGHIITPVGR---RLPVDPSRAYSALNYLIQSS 527 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNL 558 + + I + + + L Sbjct: 528 SRDVTGRALIRLHEAGFTRYLRLPIHDEIL 557 >gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52] gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52] Length = 317 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 71/373 (19%), Positives = 120/373 (32%), Gaps = 94/373 (25%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362 +++ G ++ P P R H Q +T ++DP+ I Sbjct: 16 IEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGR 75 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +A G K++ D + IE R++A ++G+Q L AF G+D++ T A V Sbjct: 76 RIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPID 135 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 QV+ +QR K + L Y A +A G+ A+ + Sbjct: 136 QVSSEQRRRAKAVNFGLIYGMSAF---GLAKQLGIPRGE----------------AQEYM 176 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E +P V + SR ++L + I R+ Sbjct: 177 DKYFERYP--------------GVMQYMEDTRSRAAQL------------GYVETIFGRR 210 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602 LP T+R R + Sbjct: 211 LH-----------------LP-----------------EITSRNAMRRKAAERAAINAPM 236 Query: 603 QAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN 654 Q + DI+ + M+ +++ VHDE+V E ++ + LM S Sbjct: 237 QGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESA 296 Query: 655 PSWAKGLPLKAEG 667 A +PL AE Sbjct: 297 AELA--VPLVAEA 307 >gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] Length = 890 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 102/629 (16%), Positives = 205/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 L + LE+ ++ + L+ LDI + ++LA L Sbjct: 371 LNKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVL 427 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + ++L Sbjct: 428 ANSYQEFYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLH 486 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 487 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 545 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 546 KQLGVILFEKLKLAPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 604 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 605 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 633 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 634 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 693 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 694 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 743 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 744 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 766 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 767 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 809 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 810 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 853 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAEG 667 + + +++ +M +PL A+ Sbjct: 854 ELDLIKTLVPKIMQQAAQ--LDVPLIADA 880 >gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824] gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824] gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018] Length = 871 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 89/572 (15%), Positives = 167/572 (29%), Gaps = 150/572 (26%) Query: 127 KELIARFCKGETHECLYDRNKPNHREAW---RLFGEYC---KGDVTVTREIFKRL----- 175 + E N + E L GE +V V +I+ +L Sbjct: 407 TAIAEYLINPSKKEY----NLKDAAEEMLLLDLTGEDNDIKIKEVYVMDKIYNKLKDKIK 462 Query: 176 -----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 E E L + ++ G+ V+ + VE K+ E+ ++ G Sbjct: 463 EYDMDELYYKVELPLIEVLSSMESEGFKVEKNKLQQIGDKFTVEIAKVKDEIYNMA-GEE 521 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSA 287 + ++L LF + L + T+T VL P +V R Sbjct: 522 FNISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLMDKHPIIEKVVYYRQL----- 576 Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +T VE + + + H +Q +T Sbjct: 577 TKLYSTYVEGLKP---------------------------VIDVDEKIHSSFNQTVTTTG 609 Query: 348 TSITSDPDPLQII-----SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401 +++P+ I +R + + ++ AD + IE RVLA +A ++ + A Sbjct: 610 RLSSTEPNLQNIPIKNEMGREIRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINA 669 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F+ D++ T + F V +VT R+ K + + Y + A ++ Sbjct: 670 FKHHSDIHTKTASEVFRVPIEEVTSRMRSNAKAVNFGIVYGISDFSL---AQDIKVSKKE 726 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 + T E + + + +ED+ + Sbjct: 727 AKEYIDT--YFERYPNVK------------KYLEDIVVTAK------------------- 753 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + TI N + II +V R +N Sbjct: 754 ---KNMYVNTIMNRRRIIPEIASSNKIV----------------------KGFGERLAMN 788 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCE 635 T +Q + D++ M+N K ++L VHDE++ Sbjct: 789 TP------------------IQGSAADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILN 830 Query: 636 TPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666 + L L M +PL+ + Sbjct: 831 VHKDELEKVKELVKLEMEEVME--LKVPLEVD 860 >gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] Length = 912 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 95/578 (16%), Positives = 189/578 (32%), Gaps = 100/578 (17%) Query: 33 FAFGFDDHPVELWDCVH-----DPVMPQ-VLKEALENT-DVTIVAHNSYFERTVLKACFN 85 F+F FD H + K AL+ ++ HN F+ +++ Sbjct: 365 FSFCFDGENAYYVPVGHHYLGVGCQLTHTQAKIALKRIFTYPLIGHNLKFDLSLIFHTLE 424 Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 L+ +++L + + + LK + M ++A+ D Sbjct: 425 LEH-TGEIYDSMILGWLYDSIAPIGLDKQMLKWFNHTMISFDSVVAK-----------DE 472 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-------------SSKEQELWYLDQTI 192 N + +Y D T ++ RLE + + E + + Sbjct: 473 N--FSQVNIAAATQYAAEDAIATFRLYHRLEEVFYKREWSSILELANKLEYPFIKVLLAM 530 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD+ L +L + ++L ++ L G + ++L LF GL Sbjct: 531 ECEGIKVDIPLLESLKEKASEHISQLSAQIFELC-GETFNLNSPQQLAHILFNRLGLKAG 589 Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309 + +T +R L + P + + R + + L+ Sbjct: 590 RSVKGGLSTDERTLLAIIDAHPVIALILDYREVNKLKSTY--------------IEPLLR 635 Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCV 364 F A+ R + Q T + P+ I + Sbjct: 636 FGSAN----------------DKHRIYTSFLQSGTATGRLSSKSPNLQNIPVRREEGRKI 679 Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424 R I+ EG L+ D + IE R+LA + +++F+ +D++ T AR F V A Sbjct: 680 RQAFISKEGHSLISIDYSQIELRLLAHFCKDSSLIESFKQDKDIHFETAARLFGVELAA- 738 Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484 +RAI K + L Y G+ +K+A T ++L + +++ A + +NF Sbjct: 739 --QKRAIAKSINFGLIYGMGS---KKLAQTLQISLKEAKNYIESYFAL--FPTIKNFLNA 791 Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK-- 542 +E E+ +G H R + N + G I + Sbjct: 792 QKEFLLENGYSQTLLG-------------HRRYFDFKNATDFMKANFLREGINSIFQGSA 838 Query: 543 ----RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576 + + ++ + ++ ++L L++ Sbjct: 839 ADLIKLSMCEIHKRYGHSDFKMLLQVHDELIFEAPQEK 876 >gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] Length = 859 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 72/423 (17%), Positives = 136/423 (32%), Gaps = 50/423 (11%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 ++ E L + + G VD + E ++ +E + + Sbjct: 459 YNNIEFPLAQVLADMTRTGILVDREGIEAFGVQLRQELDQVLTRIEMEAGTSDFNPNSPK 518 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L T LF GL T+ + +KL + Sbjct: 519 QLGTLLFDTMGLPHGKKTKNGWSTDAETLEKLRDIPL----------------------- 555 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + LQ+ + + + R H +Q + +P+ Sbjct: 556 ------VEDILQYRACQKLNSTYVEGL-LKVIGEDGRIHTRFNQTEARTGRLSSDNPNLQ 608 Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R+ +A G LV AD + IE R+LA + G+ +AF +G D++ +T Sbjct: 609 NIPIRTEMGSKLRAYFVAKPGCVLVDADYSQIELRILAHVTGDAHMQEAFLSGADIHRST 668 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 A+ +N+ P VT R+ K + + Y GA + G+++ ++T A Sbjct: 669 AAKIYNIRPEDVTPRLRSSAKAINFGIMYGKGAYSLS---KDIGVSVKEAEAFLQTYLA- 724 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 E A + ++ T R ++A + +S + + T Sbjct: 725 -----TFPNIDGYMEKTIADARQCGYVSTLFGR-RRALPELNSNNHNIRASGERMARNTP 778 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNN-LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 G A K V + +++ L+L L+ Q+ RE Sbjct: 779 IQGTAADVIKLAMVRVWRRLRNEKMESRLILTVHDELIVEAPEAEAE----KAAQILREE 834 Query: 592 TYG 594 G Sbjct: 835 MEG 837 >gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 751 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 114/689 (16%), Positives = 223/689 (32%), Gaps = 122/689 (17%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQV--------LKEALENTD 65 D G+ Y + ++ + + H+ PQ+ LK L + Sbjct: 142 DTETTGVDVYQD--VIVGVSLTLPRAGYHVYIPVAHNNAGPQLRRSYVLNGLKRYLTDPT 199 Query: 66 VTIVAHNSYFERTVL-KACFNLDIPIHRWICTLVLARSNGLPSALKAV----GEALKLSS 120 V V HN+ F+ +L + + H + + + N ALK + G+ Sbjct: 200 VGKVLHNAKFDIHMLLRHGMRMRGLAHDTMIAMKILNENEPSVALKNLATRYGKFFGFDG 259 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR------ 174 + ++L + C + Y D +T E++K Sbjct: 260 ESHT-FEDLFGKAC--------------FADVPLDMALIYAAKDTHLTWELYKWQMEHLT 304 Query: 175 -----LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229 L+ E L + + G+ VD A A + + E ++++ L + + Sbjct: 305 KREDLLKLYRELENPLVDICVEMEQTGFAVDTAFAQEYGEELKGELAEVEKTLVAHFGEI 364 Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289 + +L L+ GL T + L K P + R Sbjct: 365 NFN--SPAQLAEVLYDRLGLPQGKERSTDVKT-LKGLKGRHPGIEPLLKYREL-----TK 416 Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349 L T VEA+ P L R H +Q+ T Sbjct: 417 LLGTYVEAL---------------------------PHQLKADGRIHGSFNQVATVTGRF 449 Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409 + +P+ + R ++A +G L+ D + IE R+LA M+G+ + + GEDLY Sbjct: 450 ASREPNLQNLPPRARR-LIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREPYLKGEDLY 508 Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469 T AR F V ++ D K+M++ L + ++ G+++ ++ Sbjct: 509 STLAARVFKVPLSE-CGDGSKYRKMMKIGLLAVMYGTSMFTLSEQLGISVEEAHRFIEGF 567 Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529 +E+ D F + E ++ ++ T R ++ + + +++L Sbjct: 568 Y--DEYPDVYAFIKDTWEFVKKNE----YVATLYGRKRRFPGHREQAIV--YDQLAAKIC 619 Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589 + + + + +K +D+ + ++ R Sbjct: 620 KALGTERV----------PLDFWSNKGI------------PKDLKRKFGAVKGEVERVRR 657 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEF-NA 644 +Q + DI+ ++N G+ I TVHDE + DT Sbjct: 658 M------AVNARIQGTAADIMKRALLNLYEYTRARGWKINGTVHDEALLLVRDTITLAEV 711 Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673 L M +P+K + R+ Sbjct: 712 EELEACMVRAAE--LEVPVKVDTEIMARW 738 >gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331] Length = 903 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 113/628 (17%), Positives = 184/628 (29%), Gaps = 147/628 (23%) Query: 54 PQVLKEA--------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105 P L EA L + V HN+ L+ + LA Sbjct: 374 PAELAEADEQALAAWLADPGQPKVLHNAK---NALRVLPEQGWRLEGISMDTALAAYLVK 430 Query: 106 PSALKAVGEALKLSSQKMEEGKELIAR-FCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164 P +AL + G+EL G+ DR + + A D Sbjct: 431 PGRRSFALDALAVEYL----GRELAPAPASDGQLAFGADDRAEADALMAQARAVLDLG-D 485 Query: 165 VTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222 TR + + E L E + + G D A ++ Q + +E Sbjct: 486 AFTTR-LKEVGATELLYDMELPTSIMLARLERHGIAADRAHLESMEQQFAGAVQQAVKEA 544 Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNN 279 + G + ++L+ LF E L T+T + L Q V Sbjct: 545 HA-AVGREFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTEHELPVIML 603 Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339 R R + + L++ + +DGR+ T Sbjct: 604 RHREQAKLRVTVEGLIKTIAADGRIHTT-------------------------------F 632 Query: 340 DQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMA 393 +Q + ++DP+ I +R + EG + L+ AD + IE RV+A ++ Sbjct: 633 NQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLS 692 Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453 + ++AF +GEDL+ T ++ F V + V + R K M L Y A + Sbjct: 693 EDAGLIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ--- 749 Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513 + L Sbjct: 750 QLNIEAGEARGL--------------------------------------------MDTY 765 Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573 R + + LH+ E+ G RR LP Sbjct: 766 FLRFGGVRDYLHRVVEEARSTGYTETILGRRRY---------------LP---------- 800 Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627 LN+ RQ RE L I Q + DI+ M+ +A ++L Sbjct: 801 -----DLNSDNRQ-RREAAERMALNAPI-QGTAADIVKVAMLKVDRALTEAELTSRMLLQ 853 Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSN 654 VHDEIV E + + M++ Sbjct: 854 VHDEIVLEIAKGEREQVEEILRREMSTA 881 >gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] Length = 883 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 103/629 (16%), Positives = 204/629 (32%), Gaps = 137/629 (21%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116 LK+ LE+ ++ + L+ LDI + ++LA L Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNARDIGVL 420 Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176 S Q+ + I KG+ + H + K + + +++ Sbjct: 421 ANSYQESYVQSDEIIYG-KGKKQHSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVH 479 Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236 + E + + + G V + +DV T L ++ L G + Sbjct: 480 LYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA-GEKFNINSP 538 Query: 237 EKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 ++L LF + L T+T VL + +P + + R S+ +N Sbjct: 539 KQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYING 597 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 L++ + +DG++ H Q +T + + Sbjct: 598 LLDYIQADGKI-------------------------------HTRFLQTLTTTGRLSSVE 626 Query: 354 PDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ I +R + + L D + +E RVLA ++ E+ L+AF+ G D Sbjct: 627 PNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYD 686 Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 ++ T + F ++ +VT R K + + Y +A G++ Sbjct: 687 IHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDY---GLAKNLGISR------- 736 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 ++A+NF E +P ++ + + Sbjct: 737 ---------QEAQNFINNYFEQYP----------------------------QIKDYMKA 759 Query: 527 AFEQTIENGKA-IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585 A + E G A I +RR +P ++ K + RS R+ +N+ Sbjct: 760 AVKLAREKGYAETIMHRRRLLPDIHNKNF---------NIRSFA------ERTAINSP-- 802 Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639 +Q + DI+ M+ K ++L +HDE++ + P Sbjct: 803 ----------------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSE 846 Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEG 667 + +L +M +PL A+ Sbjct: 847 ELDLIKILVPKIMQQAAQ--LDVPLIADA 873 >gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4] gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4] Length = 899 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 107/646 (16%), Positives = 191/646 (29%), Gaps = 140/646 (21%) Query: 45 WDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103 D P Q L+ L + V H++ A D+ + + LA Sbjct: 356 VDLAAIGPDDEQALQGWLGDDAVHKAVHDAK---AATHALMGRDLRLGGVTMDVALAAYL 412 Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEY 160 P + + +++ E + + E + + + Sbjct: 413 VRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEVDDAEAAQRAADAAATRARAVVD 472 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + V E ++ E L + + G VD + + L + + Sbjct: 473 LAERLDVELEQVHGATLMAEMELPLVPVLARMESIGIAVDASALNGLRDDFADRGRQAAE 532 Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-----AIQ 275 + G + ++L+ LF G+ T+T + ++L + + Sbjct: 533 AAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDAKALEELLAKETGDTPGR 592 Query: 276 VFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 F + R + L++ + D R+ T Sbjct: 593 AFLEALLLHRETTKMRTTVEGLIKTIGDDRRIHTTF------------------------ 628 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEA 386 +Q + ++DP+ I +R + EG L+ AD + IE Sbjct: 629 -------NQTVAATGRLSSTDPNLQNIPVRTEDGRRIRGSFVVGEGYDCLLTADYSQIEM 681 Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446 RV+A ++G+ ++AF TGEDL+ +R+F V QVT + R K M L Y A Sbjct: 682 RVMAHLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTPELRRRVKAMSYGLAYGLSAF 741 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 +A+ G++ Sbjct: 742 ---GLAAQLGISQGEA-------------------------------------------- 754 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 ++ SR + + L EQ ++G RR LP Sbjct: 755 REQMEAYFSRFGGVRDYLQAVVEQARKDGYTETLFGRRRY---------------LPE-- 797 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620 LN+ R L RE L I Q + DI+ M+ Sbjct: 798 -------------LNSDNR-LKRENAERAALNAPI-QGTAADIIKAAMLKVDADLTARGL 842 Query: 621 GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665 ++L VHDE+V E P + ++ M S +PL Sbjct: 843 KSRLLLQVHDELVLEVAPGELDEVRGLVVDRMYSAIE--LDVPLDV 886 >gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] Length = 875 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 147/504 (29%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 + L + + G VD L E +L + + G + ++L Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIA-GEEFNLDSPKQL 534 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF GL + VL V R A + ++ L Sbjct: 535 GHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTY-IDALPR 593 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 DG R H ++ +T +S+P+ Sbjct: 594 MRADDG-------------------------------RVHTCFNETVTTTGRLSSSEPNL 622 Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R C + +G K + AD + IE R+LA ++ ++ + AF +G D + Sbjct: 623 QNIPVRTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHA 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T +R F + VT + R+ K + + Y A + + G+ Sbjct: 683 ATASRVFGLPVEDVTPELRSRAKAVNFGIVYGQQAFGLSQ---SLGI------------- 726 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+ E +P + L + + Sbjct: 727 ---PFGEAKEMIERYFEAYP----------------------------GVRAYLDRTIAE 755 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTR 589 E G A R+ +P ++ G R+ +N Sbjct: 756 AKEKGYAETMFGRK---------------RHIPELKAANATQRGFGERTAMNHPM----- 795 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 Q + DI+ M + ++L VHDE+ P+ + E Sbjct: 796 -------------QGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEE 842 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 ++++ +M +PL + Sbjct: 843 LSAIVKDVMEHIVD--LRVPLDVD 864 >gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] Length = 913 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 99/670 (14%), Positives = 198/670 (29%), Gaps = 163/670 (24%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVLKEALENT-DVT 67 D G+ ++ ++ F+F FD H + + Q K A+ Sbjct: 350 DCESDGLD--LQEAQLVGFSFCFDGKNAYYVPVGHRYLGVGNQLNLQEAKSAISRIFTHP 407 Query: 68 IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127 ++ HN F+ +++ L+ I + +++L+ + + + LK + M Sbjct: 408 LIGHNLKFDFSLIYRTLGLEH-IGKIYDSMILSWLYDSIAPVGLDKQMLKWFNHTMISFD 466 Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLSSKEQ--- 183 ++ + + +Y D T +++ RLE +E Sbjct: 467 SVVPKGENFSQVNII-------------TATQYAAEDAAATFKLYHRLEDEFHKREWGGI 513 Query: 184 ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 + + G VD+ L L +L Q++ L G + Sbjct: 514 LELAQNLEYPFIKVLMDMELEGIRVDIGLLEILKDKSSEHIAELSQKIYDLC-GETFNLN 572 Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291 ++L LF GL + +T ++ L + P + + R + Sbjct: 573 SPQQLAHILFENLGLKPGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYR-----ESNKLK 627 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 +T +E + GR R H Q T + Sbjct: 628 STYIEPLLRLGRTN-------------------------ETHRIHTSFLQNGTATGRLSS 662 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 P+ I +R I+ EG L+ D + IE R+LA + +++F + Sbjct: 663 KSPNLQNIPVRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDK 722 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 D++ T AR F Q +R I K + L G+ + + Sbjct: 723 DIHFETAARLFG---EQEAMQKRFIAKSINFGLI--------------YGMGSKKLSQTL 765 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + + A+ + + + N + Sbjct: 766 QIP-----LKQAKEYIESYF-------------------------ALFPTIKDFLNAQEE 795 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 + + ++ +R Y R+ + R +N+ Sbjct: 796 FLLEN-GYSQTLLGHRR------YFDFK-----------RATDFMKANFLREGINS---- 833 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD----IVLTVHDEIVCETP-DTDE 641 I Q + D++ M K ++L VHDE++ E P + E Sbjct: 834 --------------IFQGSAADLIKLSMCEIHKRYAKSDLKMLLQVHDELIFEAPSERAE 879 Query: 642 FNASMLYHLM 651 A + +M Sbjct: 880 NYAKEVADIM 889 >gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1] gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1] Length = 789 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 71/435 (16%), Positives = 150/435 (34%), Gaps = 51/435 (11%) Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFK--RLEPLSSKEQELWYLDQ--TINDRGYCVDVA 202 K + E +F + + K +L L KE EL +D + G ++ Sbjct: 352 KKHKDEQIEVFVKRVSSLAKSEFKKLKENKLVKL-YKEIELPVIDILFEMEKHGIKINEK 410 Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262 + +N ++ ++++++ + ++L LF + GL T+T Sbjct: 411 KVYEINDELEENLKEIERKIFDYCK-EEFNLNSPKQLSFILFEKLGLEPAKKTKTGFSTS 469 Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 + ++L K VE ++ L++ S+ Sbjct: 470 EEALQEL------------------KFKNPGHVELID------YILKYRELSKLKSTYT- 504 Query: 323 VFPPQN-LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKL 376 N + R H Q T + +P+ I +R C A +G + Sbjct: 505 -LNLLNYMADDKRIHTTFKQTGTATGRISSINPNLQNIPVGSIYGKRIRECFEAEKGYRF 563 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 V D + IE R+LA ++ ++ + AF ED++ T F V +V R + K + Sbjct: 564 VSFDYSQIELRILASLSNDENLIDAFINDEDIHNKTAKEIFGV--EEVDPKHRRLAKAVN 621 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 + Y +A TG+ + ++ + +N+ + + E + Sbjct: 622 FGIIYGLSPY---GLARDTGITQSEAKVFIE--RYFNLYPGVKNYIDSIIKEAKEKGYTE 676 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV-YMKKDK 555 +G K+ + +S L + G A K + + Y++K + Sbjct: 677 TILGR-----KRFIKDINSANRMLKQRAERIAINAPIQGSAADIIKLAMINIYKYLQKTQ 731 Query: 556 NNLILMLPSGRSLVY 570 ++ ++L L++ Sbjct: 732 IDVKMILQIHDELLF 746 >gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] Length = 932 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 83/491 (16%), Positives = 142/491 (28%), Gaps = 126/491 (25%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E L Y+ + + G +D Q + E Q + G + + Sbjct: 529 LLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFD-SIGREVNLSSPK 587 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL---NTL 294 +L+ LF + L T+T + ++L F + R + L L Sbjct: 588 QLQEVLFTQLQLPKTKKTKTGYTTDAKALEELARYNPHPFLEALLYHRDRIKLLQIVRNL 647 Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354 E + DGR+ T Q + + DP Sbjct: 648 RERVADDGRIHTT-------------------------------FGQTVAATGRLSSIDP 676 Query: 355 DPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408 + I +R + + L+ AD + IE R++A ++G++ L AF +GEDL Sbjct: 677 NLQNIPARTVDGQKIREAFVPQKPYTALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDL 736 Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468 + + A + V P +VT QR+ K L Y A +A+ ++ L+ T Sbjct: 737 HRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAY---GLAAQLNISQRDAKQLMDT 793 Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528 R ++ L+Q Sbjct: 794 Y--------------------------------------------FERFGKVREYLNQIV 809 Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588 G + RR LP RS N R Sbjct: 810 ATATRVGYTETMQGRRRY---------------LPELRSTNRNVADNARRA--------- 845 Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEF 642 +Q + D++ M+ + ++L VHDE+V E + Sbjct: 846 --------ALNAPIQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETE 897 Query: 643 NASMLYHLMTS 653 L + Sbjct: 898 RLEALVRQAMT 908 >gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 901 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 106/649 (16%), Positives = 178/649 (27%), Gaps = 149/649 (22%) Query: 34 AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93 A+G ++ A + A + T L+A + Sbjct: 341 AYGSGTGRIDSIAVAAPDGAGGGHGAAFIDPTTLTEA-----DETALRAWLGDESRPKAV 395 Query: 94 ICT-----LVLARSNGLPSAL--KAVGEALKLSSQKMEEGKELIA-RFCKGETHECLYDR 145 + A+ L A+ L + Q+ ++L+ + E Sbjct: 396 HDAKGPMLALWAQGMELRGLTCDTALAAYLAMPGQRTFLLEDLVRAYLQRELRGEAETGG 455 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDR 195 + RE+ LE E L + + Sbjct: 456 QASLFDDEDDDTARELGLRALAVRELADALEAFLEPRGGTHLMREVELPLVTVLAELERA 515 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G D L + + + G + ++L+ LF+ L T Sbjct: 516 GIAADGDYFSGLEAEFGAAVKQAVEAAHA-AVGEQFNLGSPKQLQEILFVRLNLPKTKKT 574 Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLG 312 +T + L Q M R + LV+ + DGR+ T Sbjct: 575 KTGYTTDADALAWLAAQTEHELPTIMLRHRDQAKLKVTVEGLVKEIADDGRIHTT----- 629 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 +QI+ + P+ I +R Sbjct: 630 --------------------------FNQIVAATGRLSSEKPNLQNIPIRTVEGRRIRQG 663 Query: 368 VIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + G L+ AD + IE R++A ++G++ + AFE+G D + TT AR F++ P QVT Sbjct: 664 FVVGPGYETLLTADYSQIELRIMAHLSGDESLIAAFESGHDFHKTTAARVFDIEPEQVTG 723 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + RA K M L Y +A + + L + Sbjct: 724 EMRAKIKAMNYGLAYGLSDF---GLAGQLNIPVQEAKALKE------------------- 761 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 + + + L+ Q ++G RR Sbjct: 762 -------------------------EYFEEFGGVRDFLNAIVAQARQDGYTETIMGRRRY 796 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 LP LN+ RQ RE L I Q + Sbjct: 797 ---------------LP---------------DLNSDNRQ-RREMAERMALNAPI-QGSA 824 Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH 649 DI+ M+N A G ++L VHDE+V E + L Sbjct: 825 ADIIKVAMLNVQSAVKEAALGSRMLLQVHDELVFEVAPGELETLRELVT 873 >gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] Length = 887 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 61/409 (14%), Positives = 132/409 (32%), Gaps = 47/409 (11%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L + + G VD + + ++++ + + G + ++L Sbjct: 486 DIELPLAIVLAKMEISGIKVDRNRLNQMQSEFTERLSEIETNIYNEA-GEEFNLNSPKQL 544 Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299 LF + L + T+T + +KL ++ Sbjct: 545 GVVLFEKLKLPIIKKTKTGYSTAVDVLEKLQGESPI------------------------ 580 Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359 + L + S+ + H Q +T + DP+ I Sbjct: 581 ----IDNILNYRTLSKIKSTYVDGLLKVIHTTDEKVHTTYVQTLTQTGRLSSIDPNLQNI 636 Query: 360 I-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413 +R + A EG ++ +D + IE RVLA + G+Q +AF+ GED++ TT Sbjct: 637 PVRIEEGRKIRQAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDIHATTA 696 Query: 414 ARSFN-VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + F ++VT + R K + + Y + G++ ++T Sbjct: 697 VKIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQ---NIGISRKDAKKFIET--YF 751 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 +E+ + + + E + ++ +S L + + T Sbjct: 752 KEFPGVKKYIDESVQLAKEQGYVETIAHR-----RRYLPDINSSSFNLRSFAERTAMNTP 806 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNL-ILMLPSGRSLVYRDVGNNRSYL 580 G A K + + + +N ++L L++ + + Sbjct: 807 IQGSAADIIKIAMIDMENELEKRNLKSRMLLQVHDELIFEVPDEEMTLM 855 >gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 908 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 95/635 (14%), Positives = 194/635 (30%), Gaps = 147/635 (23%) Query: 46 DCVHDPVMPQVLKE----ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101 D V+ + K+ + + + H+ ER + + ++ ++LA Sbjct: 372 DLTARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNIYSMS---GVGLNNIYFDIMLAS 428 Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161 P+ K+ +S + ++ + + KG + + EA + Sbjct: 429 YCLNPA--KSHC-ITDMSKEYLDFTAGVGSYAWKGSKKSSFAN----SSIEAGAKYANSI 481 Query: 162 KGDVTVTREIF------KRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 V +IF K+L L E L + + G VD+ N+ + E Sbjct: 482 SAAVFAIYKIFDFQIKEKKLSLLFFDTEMSLVEILSEMEISGIKVDLPFLRNFNEKIVYE 541 Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQ 272 ++ + + G+ + ++L + +F + L + T+T +L Sbjct: 542 LKIIENNIYKIA-GIEFNINSQKQLSSVMFEKLNLPVIKKTKTGYSTDEEVLVELSSHEF 600 Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332 ++ R + ++ L + + G Sbjct: 601 PAEILKYR-ELQKLKSTYIDPLTDYC----------VYYG-------------------- 629 Query: 333 SRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEAR 387 SR H +Q +T +++P+ I R + K + AD + I+ R Sbjct: 630 SRIHTIFNQAVTTTGRLSSTEPNLQNIPVKSAYGKEFRKAFVPERNKIFISADYSQIDLR 689 Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-VTKDQRAIGKVMELALGYQGGAK 446 VLA ++ + ++AF+ G D++ T FN+ +T R+ K + + Y Sbjct: 690 VLAHISQDTKFIEAFKAGTDIHSATAREIFNIPEGYPLTDSLRSAAKSINFGIIYGMSPF 749 Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506 ++ + + + Sbjct: 750 ---GLSKQLNIPFGKAKEYIDGYFERYDK------------------------------- 775 Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566 + W + Q +Q E+G R I +P R Sbjct: 776 -----------VKFW--MEQIVKQASEDGYVRTITGR---------------IRYIPELR 807 Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGY 622 S N R+ VQ S DI+ M++ GY Sbjct: 808 S------------TNAQVRKAGERMA-----LNTPVQGSSADIIKIAMISVYNEIKLKGY 850 Query: 623 D--IVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN 654 ++L VHD+++ E PD + N S++ + M + Sbjct: 851 KSLMLLQVHDDLLFEVPDGESENMISIIKNKMENP 885 >gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of Bemisia tabaci] Length = 939 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 99/684 (14%), Positives = 195/684 (28%), Gaps = 177/684 (25%) Query: 15 DLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVA 70 D+ G+ + D ++ AF + +L+ + TDV V Sbjct: 368 DIATTGMDPHLAD--LLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTDVLKVG 425 Query: 71 HNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129 HN V++ ++ P+ + L A LS Q + Sbjct: 426 HNLKNALIVMQRHGLSIAPPLFDTMIAHGL-------VAADMDHHLTTLSEQYLNH---- 474 Query: 130 IARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLEPLSSK------- 181 + K PN E Y + I+ ++ + Sbjct: 475 -RSYLKP-----------PNRAEKESEGIKNYAGEGADLVLHIYPKIAQALREHKVATLF 522 Query: 182 ---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 E L + + G +D+ TL ++ L +++ +L + ++ Sbjct: 523 YRVEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTLAQ-TTFNIDSPKQ 581 Query: 239 LKTWLFLETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293 L LF + LH + + T + +L+ K+ P + R Sbjct: 582 LGVVLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYR------------- 628 Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353 + P P R H Q + + Sbjct: 629 ------------------TWQKLRSTYVDALPTLLHPIDQRLHATYHQTVVTTGRLSATG 670 Query: 354 PDPLQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407 P+ QI +R I +G L AD + IE R++A A + + AF++ +D Sbjct: 671 PNLQQIPIRTPTGRALRKAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQD 730 Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467 ++ T + F V ++ R K+ + Y + L+ A L++ Sbjct: 731 IHQITAQKLFKTVI--VDQEMRQKAKIANFGIIYGISPFGLSE--RMEHLSRKEAAELIE 786 Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527 + + + ++ A Sbjct: 787 A-----------------------------------------YFEAFPGIKTYIDD-SIA 804 Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587 + + ++ RKR LP + N TTR + Sbjct: 805 HAEANGYVRTLLGRKR-----------------FLP------------DLYASNPTTRGV 835 Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDE 641 R +Q + +++ M++ K +++ VHDE+V P ++ Sbjct: 836 ARRNA-----INTPIQGSAAEMIKLAMIHIQDWLEKHKLSTKLIIQVHDELVFNVPRSEI 890 Query: 642 FN-ASMLYHLMTSNPSWAKGLPLK 664 + + LM + LPL+ Sbjct: 891 ADIQHHIPLLMATA------LPLE 908 >gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2] gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis] gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2] Length = 922 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 79/501 (15%), Positives = 163/501 (32%), Gaps = 123/501 (24%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + + K S+ + + ++ + G VD + L+ E KL++E+ +L Sbjct: 508 ILELKDNKAFRLYSNIDLPICFILDKMEKIGIKVDANYLNQLSAEFGAEILKLEEEIFAL 567 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRA 283 + G + ++L LF + L + + +KL+ + + +R Sbjct: 568 S-GTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW 626 Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343 ++ P Q R H Q Sbjct: 627 ---------------------------RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTS 659 Query: 344 THLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398 T + +P+ + + +R IA EG KL+ AD + IE R+L+ +A Sbjct: 660 TTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDAL 719 Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458 +AF +D++ T + FN+ ++T + R K + + Y A +A ++ Sbjct: 720 KQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVS 776 Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518 + +K + + + + +M++ KA+ + V Sbjct: 777 NGEASEYIK-----KYFAEYKGVQEYMEQT-------------------KAFASSNGYVI 812 Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578 + ++ VPL++ KK K R+ Sbjct: 813 NFF-------------------GRKCFVPLIHDKKLKQF-----------------AERA 836 Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632 +N +Q + DI+ M+N +VL +HDE+ Sbjct: 837 AINAP------------------IQGTNADIIKIAMINLDQEIEKNNLKTRLVLQIHDEL 878 Query: 633 VCETPDTD-EFNASMLYHLMT 652 + E P+ + E ++ +M Sbjct: 879 LFEVPEDEVELVTPIIKKIME 899 >gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] Length = 955 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 112/647 (17%), Positives = 203/647 (31%), Gaps = 157/647 (24%) Query: 53 MPQVLKEALE----NTDVTIVAHNSYFERTVLKACFNL------DIPIHRWICTLVLARS 102 + + L A + + + + +R +L+ D + ++C + A + Sbjct: 403 ISEDLASAFAEWVSDPQMRKIVMDLKNQRKLLREYGYKLDGAIEDPSLSSYMCGYIAAAN 462 Query: 103 NGL-PSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160 L ++ + E L + Q E EL+ E + N + R+ E Sbjct: 463 RRLFAERIEDLAEKYLWIPQQ---EFSELVFPEEAPSLFEMPGEENLRYFTQVSRVIHEL 519 Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220 + + + +L+ E L Y+ + G V AL + LN + ++ Sbjct: 520 ARI-LHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEE 578 Query: 221 ELESLTYGLVS----SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276 + + L G V+ + +++L+T LF GL ++ S L + Sbjct: 579 QAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPE 638 Query: 277 -----FNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328 F ++A R + + L +A +DGR+ T Sbjct: 639 SDGAQFLIALQAYRDNIKLKQTVEGLQKAAVADGRVHTT--------------------- 677 Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS-------EGKKL 376 Q ++ P+ I +R I + E + L Sbjct: 678 ----------FQQNAASTGRLSSTAPNLQNIPIRTDEGRRIRGAFIVAPKILDGVEYEGL 727 Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436 + AD + IE R++ +A ++ ++A+ GEDL+ + F VAP +VT RA K M Sbjct: 728 LTADYSQIEMRIMVHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMS 787 Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496 L Y G F +A ++ + Sbjct: 788 YGLAY--GLSRF-GLAKQLNISSDEA---------------------------------- 810 Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 ++ + ++ RV L +Q +G RR Sbjct: 811 -------GELRTNYFKRFGRVGRF---LRGVVKQAHNDGYTETIYGRR------------ 848 Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616 LP S NR+ RE L I Q + DI+ M+N Sbjct: 849 ---RSLPDLDS-------PNRT---------RREAAERAALNAPI-QGTAADIIKIAMIN 888 Query: 617 A------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656 ++L VHDEI+ E + E +L M+ Sbjct: 889 IHRRLQEENLKTRMLLQVHDEIILEVAAGEREAAQRILVEEMSEAIE 935 >gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 870 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 68/497 (13%), Positives = 148/497 (29%), Gaps = 118/497 (23%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 E L ++ ++ G+ ++ + L E T+ ++E+ L + ++L Sbjct: 471 KVEHPLIFVLSSMEALGFNINKNMLDDLAIKFKEEITRTEKEIYDLA-EEEFNINSPKQL 529 Query: 240 KTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF + L + T+T VL + ++ R ++ + L Sbjct: 530 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLQDKHEIIPKITYYRQITKLNSTY-VEGLKN 588 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++SDG + + +Q +T +++P+ Sbjct: 589 VIDSDGHIHSSF-------------------------------NQTVTTTGRLSSTEPNL 617 Query: 357 LQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R I E G L+ D + IE RVLA M+ ++ + AF+ D++ Sbjct: 618 QNIPIKYEMGREIRKVFIPDEEGDILLSCDYSQIELRVLAHMSNDENMIDAFKHHSDIHT 677 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T + F V VT R+ K + + Y + + + + ++ Sbjct: 678 KTASEVFKVPIEDVTSLMRSRAKAVNFGIVYGISDFSLSQ---DLHITKKEASEYMEI-- 732 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 E + + + + + E+ Sbjct: 733 YFERYPKIKGYLDSVMQEAKENGYV----------------------------------- 757 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590 I +RR +P + R +N + Sbjct: 758 ------LTILNRRRFIPEIKSSNR---------------IVKALGERLAMNAPIQ----- 791 Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649 G + I A+ + + + ++L VHDE++ + + + Sbjct: 792 ----GSAADIIKLAM---VNVYNKLKEKELKSTMILQVHDELILNVKENELEEVKQIVKD 844 Query: 650 LMTSNPSWAKGLPLKAE 666 M +PL+ + Sbjct: 845 EMEKVLD--MKVPLEVD 859 >gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] Length = 880 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 66/400 (16%), Positives = 129/400 (32%), Gaps = 57/400 (14%) Query: 171 IFKRLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 I K+L L + E L Y + + G VD + + KL++ + S Sbjct: 467 ILKKLSELGLDDLYKNIEMPLIYSLAKMENTGVRVDEERLKKYANTLLEKIDKLEESIIS 526 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRM 281 G + ++L LF + L T+T T VL + R Sbjct: 527 KA-GESFNINSPKQLGEILFGKLKLSGGKKTKTGYSTAADVLEKLALEHEIIRDILEYRQ 585 Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341 ++ L + DGR+ H +Q Sbjct: 586 LTKLNSTYA-TGLAGYIREDGRI-------------------------------HGTFNQ 613 Query: 342 IITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396 IT +++P+ I +R + G V AD + IE RVLA ++G++ Sbjct: 614 TITATGRISSTEPNLQNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRVLASLSGDE 673 Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456 ++++ + D++ T ++ F+V +VT + R K + + Y A ++ Sbjct: 674 KLIESYHSAADIHAATASQVFHVPLEEVTPELRRNAKAVNFGVVYGISAF---GLSEDLS 730 Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516 ++ + + + + A E F+ T R++ + S Sbjct: 731 ISRKEALDYINN------YFKIYGGVKKFLDKQVADAKEKGFVKTMFGRIRP-IPEIKSS 783 Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556 + + + G A K + + K+ Sbjct: 784 NFMTRSFGDRVAMNSPIQGSAADIMKISMLKVDEALKESG 823 Score = 44.7 bits (104), Expect = 0.054, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%) Query: 599 ENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEIVCETPDTDEFNASMLYHL-M 651 + +Q + DI+ M+ +A GYD IVL +HDE++ E + + S L M Sbjct: 797 NSPIQGSAADIMKISMLKVDEALKESGYDANIVLQIHDELLIEVKEEEAEKVSKLVEKTM 856 Query: 652 TSNPSWAKGLPLKAEG 667 S +PL+ + Sbjct: 857 KEAVS--LKVPLEVDA 870 >gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] Length = 875 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 90/606 (14%), Positives = 186/606 (30%), Gaps = 102/606 (16%) Query: 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63 + D ET + D A+ ++ F+F F++ H + + Sbjct: 315 ISFDTET-TSTD---------AKIAKIVGFSFCFNEQTSYYVPLAHSYLGVESQISM--- 361 Query: 64 TDVTIVA-----------HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112 + A N ++ ++ F ++ P + T++LA + S++ Sbjct: 362 -NSAKWAISQIYKGFVIGQNLKYDFRIVANNFGIE-PPKNYSDTMILAWLDDPSSSVGMD 419 Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172 A KL + + + + ++ KGE + + +Y D +T + + Sbjct: 420 NLAKKLYNYETIKFESVVK---KGEDFSSV----------DLQSASKYASEDAWITLKFY 466 Query: 173 KRLEPLSSK---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223 K + E + G +++ L D L E+ Sbjct: 467 KTFTNKLEESMLNIAKNVEFPFILTLFDMESNGIRLNLEKLRALILRNDSALRALTTEIY 526 Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNR 280 L + ++L + LF L + T+T + VLS L P ++ R Sbjct: 527 ELC-EQRFNINSSKQLGSVLFDYLKLPAKKKTKTGYSTDESVLSELLDLHPSIEKILEYR 585 Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340 + + + R + Sbjct: 586 ELYKLQST------------------------------YCEPLLNLAIKDENHRVYTNFI 615 Query: 341 QIITHLPTSITSDPDPLQIISD-----CVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395 Q T + +P+ I + +R+ +G L+ D + IE R+LA + + Sbjct: 616 QTGTATGRLSSKNPNLQNIPARGNLAKDMRAVFEPKDGYSLISLDYSQIELRLLAHFSCD 675 Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 ++AF+ G+D++ T F + RAI K + L Y G+ K+++ Sbjct: 676 PALIEAFKNGDDIHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSN---KLSNEL 728 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 ++ + + + A + + ++ A D F+ T R K + Sbjct: 729 SIDKKSAKEYID------RYFKAFSTIKDFLDSIKNRAKNDGFVETLIGR--KRYFDFGG 780 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + T G A K + + + D ++L + RD Sbjct: 781 ATPMQLAMFEREAVNTKFQGSAADIIKIAMIKVKDLLNDDAKMLLQIHDELIFEVRDEIA 840 Query: 576 NRSYLN 581 N Sbjct: 841 PSFAKN 846 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 102/528 (19%), Positives = 179/528 (33%), Gaps = 69/528 (13%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVA 70 ID G+ E + L HPV + D + P +AL N+ V Sbjct: 39 IDTETTGLDPLTE--RIRLIQIAAPQHPVIIVDLAALADSELSP---LKALLNSSALKVF 93 Query: 71 HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130 N F+ VL+ + ++LA + L+ +K + + L Sbjct: 94 QNGKFDWQVLEMA---GLRPSGPFFDVMLA------------SQVLRSGLKKDHDLQSLT 138 Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-------LSSKEQ 183 F + + L N A EY D V ++ RL L + + Sbjct: 139 FEFLGIKLDKSLQSSNFAGKLSA--SQLEYAALDAAVLLKLRARLHSKLRSAGLLETAKI 196 Query: 184 ELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241 E + + G +DV H + + + ++ EL GL + +L Sbjct: 197 EFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQKQATLVELVK--AGLKPAPS--AQLS- 251 Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 LF + +E + + +VLS+ + L + ++ +L + Sbjct: 252 -LFPDM---VETINPRSSVQVLSALQALN----------IPIKSTSKSELIPIARQYPV- 296 Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361 ++ L + + P R H Q P+ + Sbjct: 297 --IQLLLNYRKLASLCSNFAEALPKHIHQITGRIHPSYRQCGARSGRFSCKQPNLQNVPR 354 Query: 362 DC----VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417 +C +R+C IA G +++ AD + IE R++A ++G+ L A+ GEDL+ T + Sbjct: 355 NCTVKGMRACFIAPPGYQIIKADYSQIELRIVAEISGDAKMLDAYVKGEDLHTLTASLIT 414 Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG---LNLNTFAHLVKTNSAPEE 474 +VT + R I K + L Y GA Q A L L K Sbjct: 415 GKLLEEVTTEDRRIAKSVNFGLIYGMGAAKLQAYAEEKYDVLLTLEEAKEFRK-----RF 469 Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 ++ RW ++D+ ++ W +K R+SEL N Sbjct: 470 FQAYSGVKRWHDSIRRTVYVKDIKQIRTIGGRRRRWAKK-PRLSELLN 516 >gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] Length = 290 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 127/246 (51%), Gaps = 19/246 (7%) Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSA----PEEWEDAENFCRWMQENH-PEHAIE 495 Y+ G + +TGL L + ++ T +A P ++A +W + NH P + Sbjct: 52 YRSGDDRRRYARRSTGLTLPSA--VIDTPNACAASPMPIQEAVEALQWTKANHRPTFGLS 109 Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 D AC+ K+AWR H ++ W L A I + + + ++ + Sbjct: 110 DR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 163 Query: 556 NNLILMLPSGRSLVY----RDVGNNRSYLNT--TTRQLTREYTYGGKLTENIVQAVSRDI 609 L L LPSGR L Y D SY+ T TR+ TR TYGGKL ENI QAVSRD+ Sbjct: 164 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 223 Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669 LA M AGY IVLTVHDEI+ E D FNA+ L LM + P WA+GLPL AEG++ Sbjct: 224 LAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 283 Query: 670 SKRYRK 675 + RYRK Sbjct: 284 THRYRK 289 >gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] Length = 882 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 88/495 (17%), Positives = 146/495 (29%), Gaps = 110/495 (22%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L E + + D G VD L L Q D + G V + + Sbjct: 472 LLDLEMAVSRTLGEMEDAGIAVDEGLLEQLRQDFDGRVFAAARSAYDAIGGEV-NLSSPK 530 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L+ LF + GL ++ + L +A Sbjct: 531 QLQEVLFDQLGLPPTRKMKSGHTTNADALANLAVSIAG----------------REDDKA 574 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + L L+ A + R S R R H Q ++DP+ Sbjct: 575 LAGQQFLASLLEHRDAIKL-RQSVVGLQRSV--RDGRIHTTFQQTAAATGRLSSTDPNLQ 631 Query: 358 QI-----ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411 I +R+ + EG + ++ AD + IE R++A ++G+ ++AF G DL+ Sbjct: 632 NIHARTAEGRSIRAAFVPGEGYESIMTADYSQIEMRLMAALSGDVELIEAFREGADLHTY 691 Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471 +R + V +VT D R+ K M L Y A ++ +++ L Sbjct: 692 VASRVYGVPEEKVTADDRSHIKAMSYGLAYGLSAY---GLSKQLRISVAQAQAL------ 742 Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531 SR + L ++ Sbjct: 743 --------------------------------------MDDYFSRFGRVRTYLDSLVQEA 764 Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591 + G RR LP LN+T RQ RE Sbjct: 765 RKEGYTQTILGRRRY---------------LP---------------DLNSTNRQ-AREA 793 Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASML 647 L I Q + D++ M+ + ++L VHDE+V E + + Sbjct: 794 AERMALNAPI-QGSAADVIKLAMVAVVDSMKEMRSRVLLQVHDELVLEIAPGERDAVEAV 852 Query: 648 YHL-MTSNPSWAKGL 661 M + A L Sbjct: 853 VRREMENAVELAVPL 867 >gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] Length = 875 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 77/504 (15%), Positives = 147/504 (29%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 + L + + G VD L E +L + + G + ++L Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIA-GEEFNLDSPKQL 534 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF GL + VL V R A + ++ L Sbjct: 535 GHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTY-IDALPR 593 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 DG R H ++ +T +S+P+ Sbjct: 594 MRADDG-------------------------------RVHTCFNETVTTTGRLSSSEPNL 622 Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R C + +G K + AD + IE R+LA ++ ++ + AF +G D + Sbjct: 623 QNIPVRTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHA 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T +R F + V+ + R+ K + + Y A + + G+ Sbjct: 683 ATASRVFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQ---SLGI------------- 726 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+ E +P + L + + Sbjct: 727 ---PFGEAKEMIERYFEAYP----------------------------GVRAYLDRTIAE 755 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTR 589 E G A R+ +P ++ G R+ +N Sbjct: 756 AKEKGYAETMFGRK---------------RHIPELKAANATQRGFGERTAMNHPM----- 795 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 Q + DI+ M + ++L VHDE+ P+ + E Sbjct: 796 -------------QGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEE 842 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 ++++ +M +PL + Sbjct: 843 LSAIVKDVMEHIVD--LRVPLDVD 864 >gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 919 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 81/474 (17%), Positives = 145/474 (30%), Gaps = 69/474 (14%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + + V H++ +++ + + L P +AL L Sbjct: 499 LGDPERPKVMHDAK---GLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALSLEY 555 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177 G+EL+ + R + + + + RL Sbjct: 556 L----GRELV-----PAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGA 606 Query: 178 ---LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234 L+ E L + G D + + + +E + G + Sbjct: 607 EGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREAHA-AVGHEFNLG 665 Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ---VFNNRMRASRSAVLKL 291 ++L+ LF E L T+T S L Q V R R + Sbjct: 666 SPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTV 725 Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351 L++++ DGR+ T +Q + + Sbjct: 726 EGLIKSIAPDGRIHTT-------------------------------FNQTVAATGRLSS 754 Query: 352 SDPDPLQII-----SDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +DP+ I +R + EG + L+ AD + IE RV+A ++ ++ + AF +G Sbjct: 755 TDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSG 814 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 EDL+ T FNV P V + R K M L Y A + G+ L Sbjct: 815 EDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLGIEAGEARAL 871 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + T + + R E A + T R ++ +S + Sbjct: 872 MDT------YFERFGGVRDYLHRVVEEARATGYTATMLGR-RRYLPDLNSDNRQ 918 >gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46] Length = 225 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 79/272 (29%), Positives = 112/272 (41%), Gaps = 60/272 (22%) Query: 416 SFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAP 472 FNV +TK R GKV ELALGYQGGA A + M + G+ N Sbjct: 1 MFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ--------- 51 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + +WR + + W +A T+ Sbjct: 52 --------------------------------GLVDSWRNANPNIVNFWKACQEAAINTV 79 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNR------SYLNTT- 583 ++ RK + K L++ LPSGR+L Y VG N ++ Sbjct: 80 KS------RKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDL 133 Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643 R+ ++ TYGGKL ENIVQA +RD+LA + +G+ IV VHDE++ E P Sbjct: 134 NRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNG- 192 Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675 + +M WAKGL L ++G+ S Y K Sbjct: 193 LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224 >gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 861 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 106/683 (15%), Positives = 214/683 (31%), Gaps = 165/683 (24%) Query: 15 DLTKCGICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT 67 DL + G YA D + FA D + L +AL++T Sbjct: 304 DLLQDGALVYANVDNESYYDAQLYGFAISLQDRTEYI-----------ELSDALQDTAFL 352 Query: 68 IVA--HN--SYFERTVLKACFNLD-IPIHRWICTLVLARSN--GLPSALKAVGEALKLSS 120 N + ++ + + IP +++A G S + E + Sbjct: 353 EWLKEENGKAVYDAKNFYHALHKNNIPFADVTFDVMIAAFLVDGTLSDYDKLAEKYQFDR 412 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY--CKGDVTV-TREIFKRLEP 177 +++ F K + + + A + + K D + E+ + Sbjct: 413 SLLKD-----DVFGKKGKGKLVDSDEAARYAMAQADYLQDLVAKLDTALREMEMKELF-- 465 Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 ++ E L ++ + G ++ + + + L ++ + G+ + + Sbjct: 466 -TTIEMPLTHVLYAMEKEGVVTSLSTLDEIAKATSDKIDALSAKIYEIA-GMEFNINSPK 523 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297 +L L+ E GL +T VL P + +R + + L + Sbjct: 524 QLAGILYDELGLKAGKK-RSTAADVLEKLASQHPMIPLLLEHR-KYQKIYSTYAVGLSKH 581 Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357 + DG++ H +QI T +S+P+ Sbjct: 582 VLKDGKI-------------------------------HTIFNQIQTQTGRLSSSEPNLQ 610 Query: 358 QII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412 I +R +ASEG L+ AD + IE R+LA MA E+ + AF G D++ T Sbjct: 611 NISVRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKT 670 Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472 + F+V V + R K + + Y ++ G+ + Sbjct: 671 AMQIFDVEHDAVDANMRRSAKTVNFGIVYGQSDF---GLSEQLGITRKEAHAFID----- 722 Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532 + + N +M A+ ++H V L+N Sbjct: 723 KYFASYPNIKNFMDTTI-------------------AFCEEHGYVKTLFN---------- 753 Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592 +RR + + DKN ++ R+ +N Sbjct: 754 ---------RRRYIKEIS---DKNYMMREF------------GKRAAMNAP--------- 780 Query: 593 YGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASM 646 +Q + D++ M++ + ++L +HDE++ + + + Sbjct: 781 ---------IQGSAADLIKLAMIHIYKKMQEEQVKSRMILQIHDELIFDVWEEE---LEQ 828 Query: 647 LYHLMTSNPSWAKGL--PLKAEG 667 + ++ A L PL AE Sbjct: 829 MKTIVEEGMQHAMKLRVPLIAEA 851 >gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] Length = 908 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 103/603 (17%), Positives = 172/603 (28%), Gaps = 127/603 (21%) Query: 61 LENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119 L + T H++ F +NLD L R + +L+A+ Sbjct: 391 LADPTATKAVHDAKRFGLACRSHGWNLDGVTSDTALAAYLVRPDLKSDSLEALATRYL-- 448 Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV----TVTREIFKRL 175 G+EL R + + + N A D+ Sbjct: 449 ------GRELNPRTAAAQPTLDGLETDGENEAAANLAALAAATRDLAEVLDGELASHNAA 502 Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235 L+ E + + + G DVA L E + + + R Sbjct: 503 GLLADMELPVMTVLTEMEAIGITADVAHLTGLESTFAAEAAEAVAAAHAAVD-QTFNLRS 561 Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL- 294 ++L+ LF + G+ T+T S L + R T+ Sbjct: 562 PKQLQEILFDKLGMPKTKRTKTGYTTDADSLAGLYATTQHPVLEAILRHRDREKLKQTVS 621 Query: 295 --VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352 + + DGR+ T Q + + Sbjct: 622 GLLAEVAEDGRIHTT-------------------------------YQQNVAATGRLSSK 650 Query: 353 DPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406 DP+ I +R I +EG + L+ D + IE R++A ++G++ ++AF++GE Sbjct: 651 DPNLQNIPVRTDAGRRIRQGFIVTEGFETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGE 710 Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466 DL+ T AR FNV P V +QR K M L Y A + G+ L+ Sbjct: 711 DLHTTVAARVFNVEPGSVDAEQRRRIKAMSYGLAYGLSAYGLSQ---QLGITPEEARGLM 767 Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526 + R E A + + T R ++ +S + + + Sbjct: 768 EEYFTR------FGGVRDYLRTVVEEARKAGYTETMFGR-RRYLPDLNSDNRQRRDMAER 820 Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586 A G A I ML R+LV V + Sbjct: 821 AALNAPIQGSAA----------------DIMKIAMLNVHRALVAAKVKS----------- 853 Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646 ++L VHDE+V E + Sbjct: 854 ------------------------------------RVLLQVHDELVLEIAPGEAPEVEK 877 Query: 647 LYH 649 L Sbjct: 878 LVR 880 >gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567] gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567] Length = 955 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 95/533 (17%), Positives = 163/533 (30%), Gaps = 141/533 (26%) Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214 + + +L+ E L Y+ + G V AL + LN Sbjct: 513 SRVIHELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSR 572 Query: 215 RTKLDQELESLTYGLVS----SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270 + +++ + L G V+ + +++L+T LF GL ++ S L Sbjct: 573 ASMAEEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLL 632 Query: 271 PQAIQV-----FNNRMRASRSAVL---KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322 + F ++A R + + L +A +DGR+ T Sbjct: 633 TKVSPESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVTDGRVHTT--------------- 677 Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIAS------ 371 Q ++ P+ I +R I + Sbjct: 678 ----------------FQQNAASTGRLSSTAPNLQNIPIRTDEGRRIRGAFIVAPKVLDG 721 Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430 E + L+ AD + IE R++ +A ++ ++A+ GEDL+ + F VAP +VT RA Sbjct: 722 VEYEGLLTADYSQIEMRIMVHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRA 781 Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490 K M L Y G F +A ++ + Sbjct: 782 KVKAMSYGLAY--GLSRF-GLAKQLNISSDEA---------------------------- 810 Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550 ++ + ++ RV L +Q +G RR Sbjct: 811 -------------GELRTNYFKRFGRVGRF---LRGVVKQAHNDGYTETIYGRR------ 848 Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610 LP S NR+ RE L I Q + DI+ Sbjct: 849 ---------RSLPDLDS-------PNRT---------RREAAERAALNAPI-QGTAADII 882 Query: 611 AEGMMNA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS 656 M+N K ++L VHDEI+ E + E +L M+ Sbjct: 883 KIAMINIHRRLQEEKLKTRMLLQVHDEIILEVAVGEREAAQRILVEEMSEAIE 935 >gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 314 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 66/359 (18%), Positives = 119/359 (33%), Gaps = 92/359 (25%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362 ++ G S+ P + R H Q +T +SDP+ I Sbjct: 15 VEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGR 74 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R IA EG +V AD + IE R++A ++G+Q + AF G+D++ +T A F V+ Sbjct: 75 RIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLD 134 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 +VT +QR K + L Y A ++ G++ + Sbjct: 135 EVTSEQRRNAKAINFGLIYGMSAF---GLSRQLGISRPDAQKYMD--------------- 176 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 + Q++ V + ++ +A + + + R+ Sbjct: 177 --------------------------LYFQRYPSVQQFMTDI-RAKAKAQGYVETLFGRR 209 Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVY-RDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601 L LP S R G R +N Sbjct: 210 -----------------LYLPDINSSNAMRRKGAERVAINAPM----------------- 235 Query: 602 VQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN 654 Q + DI+ M+ + ++++ VHDE+V E + F + M + Sbjct: 236 -QGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAA 293 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 87/499 (17%), Positives = 164/499 (32%), Gaps = 70/499 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73 +D G+ + + L +D PV + DC + L A+ +T V N+ Sbjct: 32 VDTETTGLDPH--TCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAILSTSGVKVFQNA 89 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 F+ L A + + L R +G P A ++ +++ ++ Sbjct: 90 KFDLQFLMALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLNEDLDKEEQ----- 144 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------LSSKEQE 184 T E Y D + + K + P ++ E Sbjct: 145 ----TSNW--------QGELTESQILYAARDAEILLRLRKVMIPQILENHLTQIAEIEFR 192 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL- 243 + RG +D L + + ER EL + R L ++ W Sbjct: 193 CVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYV------ERPLMQMSLWGE 246 Query: 244 -------FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 F L L E ++ + L P Sbjct: 247 DVAINQNFESQQFVLNVLHEHGIPVAATAKQDLYPHRRHPL------------------- 287 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ L + A+++ F P P R H QI +P+ Sbjct: 288 -------VKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNI 340 Query: 357 LQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 QI D R+C A G+KL++AD + IE RV A ++G+ + A++ GEDL++ T + Sbjct: 341 QQIPRDSEFRACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASL 400 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEE 474 + +++ +R K + L + GA Q+ A G+ ++ + Sbjct: 401 VAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKA 460 Query: 475 WEDAENFCRWMQENHPEHA 493 + + + ++ + P+ Sbjct: 461 YTGIHRWHQSIKAHLPKEG 479 >gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali] Length = 875 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 94/635 (14%), Positives = 192/635 (30%), Gaps = 157/635 (24%) Query: 32 LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91 LF++ ++ ++ L + + + ++ +LK N I Sbjct: 361 LFSYNTQ---------TNNNWFSDIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDIT 408 Query: 92 RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151 ++ + + K L K E + + Sbjct: 409 AIEDLELMQYALSAGLS-----------------QKNLFKEVLKETLIENIIIESAKIVI 451 Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211 L+ + + + K S + + ++ + G VD L+ Sbjct: 452 NFISLYKQ-----TILELKDNKTFRLYSDIDLPICFILDKMEKVGITVDANYLKQLSAEF 506 Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSNKKL 269 E KL++E+ +L+ G + ++L LF + L + + +KL Sbjct: 507 GTEILKLEEEIFALS-GTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKL 565 Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329 + + + +R ++ P Q Sbjct: 566 SEHGYNIADLLLRW---------------------------RQLTKLKNTYTDSLPKQID 598 Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGI 384 R H Q T + +P+ I + +R IA EG KL+ AD + I Sbjct: 599 NITHRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSSEGNQIRQAFIAEEGYKLISADYSQI 658 Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444 E R+L+ +A +AF +D++ T + FN+ ++T + R K + + Y Sbjct: 659 ELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGIS 718 Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504 A +A + +K + + + + +M++ Sbjct: 719 AF---GLAKQLNATNGEASEYIK-----KYFAEYKGVQEYMEQT---------------- 754 Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564 KA+ + V+ + ++ VPL++ KK K Sbjct: 755 ---KAFASSNGYVTNFF-------------------GRKCFVPLIHDKKLKQF------- 785 Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------ 618 R+ +N +Q + DI+ M+N Sbjct: 786 ----------AERAAINAP------------------IQGTNADIIKIAMINLDQEIEKR 817 Query: 619 KAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652 K +VL +HDE++ E P D E ++ +M Sbjct: 818 KLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIME 852 >gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] Length = 512 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 97/601 (16%), Positives = 194/601 (32%), Gaps = 134/601 (22%) Query: 85 NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144 L I + ++LA L S Q+ + I KG+ + Sbjct: 18 RLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYG-KGKKQHSVDV 76 Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204 H + K + + ++L + E + + + G V Sbjct: 77 DTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTL 136 Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR--- 261 + +DV T L ++ L G + ++L LF + L T+T Sbjct: 137 VKMKNDLDVRITDLKNKIYQLA-GEKFNINSPKQLGVILFEKLKLTPAKKTKTGYSTSVD 195 Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321 VL + +P + + R S+ +N L++ + +DG++ Sbjct: 196 VLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKI----------------- 237 Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKK 375 H Q +T + +P+ I +R + + Sbjct: 238 --------------HTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSY 283 Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKV 434 L D + +E RVLA ++ E+ L+AF+ G D++ T + F ++ +VT R K Sbjct: 284 LFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKA 343 Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494 + + Y +A G++ ++A+NF E +P Sbjct: 344 VNFGIVYGISDY---GLAKNLGISR----------------QEAQNFINNYFEQYP---- 380 Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA-IIARKRRDVPLVYMKK 553 ++ + + A + E G A I +RR +P ++ K Sbjct: 381 ------------------------QIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKN 416 Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613 + RS R+ +N+ +Q + DI+ Sbjct: 417 F---------NIRSFA------ERTAINSP------------------IQGSAADIIKIA 443 Query: 614 MMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAE 666 M+ K ++L +HDE++ + P + + +++ +M +PL A+ Sbjct: 444 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIAD 501 Query: 667 G 667 Sbjct: 502 A 502 >gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] Length = 885 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 105/638 (16%), Positives = 197/638 (30%), Gaps = 154/638 (24%) Query: 55 QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALK 110 + L+E LEN + T+ + LK L I L+L + L Sbjct: 365 EPLREFLENKNKTLDVFDGKKTYVSLKR---LGIEAESIDFDLLLVSYLLNNTDNSNDLG 421 Query: 111 AVGEALKLSSQKMEE---GKELIARFCKGETH-ECLYDR--NKPNHREAWRLFGEYCKGD 164 + + K ++ GK C ET E L + ++ + D Sbjct: 422 QLCQKQGYFGVKSDDEVYGKGAKKEICADETFFEHLRSKVFAIAFLKQKLMQKLKDNSQD 481 Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224 E+ L + + G D T+ + + L+ + Sbjct: 482 -----------HLYFEIERPLSIVLAKMEIAGIKADKETLETMGSRFKEKISDLESLIYQ 530 Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--TPQAIQVFNNRMR 282 G + ++L T LF + GL T+T + +KL V R Sbjct: 531 EA-GETFNINSPKQLGTILFDKLGLPGAKKTKTGYSTAVGVLEKLRGNDIVDNVLLYRQF 589 Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342 A + ++ L++ M+ D ++ H Q Sbjct: 590 AKLKSTY-IDGLIKVMDQDEKV-------------------------------HTRYTQT 617 Query: 343 ITHLPTSITSDPDPLQII-----SDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQ 396 +T + +P+ I +R I S G ++ +D + IE RVLA ++ ++ Sbjct: 618 LTTTGRLSSVEPNLQNIPVRLEEGRKIRQAFIPSHQGWEIFSSDYSQIELRVLAHISKDE 677 Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455 KAF+ D++ T + F ++ P +VT + R K + + Y +A + Sbjct: 678 NMQKAFKDDFDIHANTAMKIFGLSSPDEVTPNMRRQAKAVNFGIVYGISDF---GLAQSI 734 Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515 G + ++T + ++ + E A ++ T Sbjct: 735 GCRRDQAKTFMET------YFESFPGVKRYMTEIVELARNQGYVET-------------- 774 Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575 + ++RR + + K RS Sbjct: 775 -----------------------LFKRRRYLEGIRSKNFNQ---------RSFA------ 796 Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVH 629 R+ +NT +Q + DI+ M + + ++L VH Sbjct: 797 ERTAMNTP------------------IQGSAADIIKVAMIKMQETLEKEELKARMLLQVH 838 Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666 DE++ E P+ + L +M S +PLK E Sbjct: 839 DELIFEAPEEEIPVLEKLVPSVMDSAVK--LDVPLKVE 874 >gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford] gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford] Length = 872 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 157/480 (32%), Gaps = 123/480 (25%) Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246 ++ + G VD + L+ E + L++E+ +L+ G + ++L LF + Sbjct: 479 FILDKMEKTGIKVDANYLNQLSAEFGAEISILEEEIFALS-GTKFNIGSPKQLGKILFEK 537 Query: 247 TGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 L + +KL+ + + +R Sbjct: 538 MQLPFGKAAAKAISYSTAAEILEKLSEHGYNIADLLLRW--------------------- 576 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 ++ P Q R H Q T + +P+ I Sbjct: 577 ------RQLTKFKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSR 630 Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 + +R IA EG KL+ AD + IE R+L+ +A +AF +D++ T + FN+ Sbjct: 631 EGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTACQIFNL 690 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 ++T + R K + + Y A +A ++ + + +K + + + + Sbjct: 691 QKHELTSEHRRKAKAINFGIIYGISAF---GLAKQLNVSNSEASEYIK-----KYFAEYK 742 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 +M++ KA+ + V + Sbjct: 743 GVQEYMEQT-------------------KAFASSNGYVINFF------------------ 765 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 ++ +PL++ KK K R+ +N Sbjct: 766 -GRKCFIPLIHDKKLKQF-----------------AERAAINAP---------------- 791 Query: 600 NIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652 +Q + DI+ M+N K +VL +HDE++ E P+ + E ++ +M Sbjct: 792 --IQGTNADIIKIAMINLDQEIAKNKLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIME 849 >gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14] gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14] Length = 889 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 108/611 (17%), Positives = 178/611 (29%), Gaps = 146/611 (23%) Query: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 L + D V H++ VL + LA P +AL L Sbjct: 375 LADADRPKVFHDAKGAMRVLAEH---GWSVDGVRMDTALAAYLVKPGRRSFALDALSL-- 429 Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RLEPLS 179 + L + EA L + + E+F+ RLE + Sbjct: 430 ------EYLHRELAPAAAADGQLAFGADEAAEAEMLMIQ--ARSILDLGEVFEGRLEEVG 481 Query: 180 ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 E L + G D A + Q+ + +E + G + Sbjct: 482 AADLLRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHA-AAGHEFNL 540 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLK 290 ++L+ LF E L T+T + L Q + V R R + Sbjct: 541 GSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVT 600 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 + L++ + +DGR+ T +Q + Sbjct: 601 VEGLIKTIAADGRIHTT-------------------------------FNQTVAATGRLS 629 Query: 351 TSDPDPLQII-----SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFET 404 ++DP+ I +R + EG + L+ AD + IE RV+A ++ + ++AF + Sbjct: 630 STDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTS 689 Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464 GEDL+ T ++ F V + V + R K M L Y A + + Sbjct: 690 GEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAAEARA 746 Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524 L R + + L Sbjct: 747 L--------------------------------------------MDAYFERFGGVRDYL 762 Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584 +A ++ G RR LP LN+ Sbjct: 763 RRAVDEARATGYTATLFGRRRY---------------LP---------------DLNSDN 792 Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPD 638 RQ RE L I Q + DI+ M+N +A ++L VHDEIV E Sbjct: 793 RQ-RREAAERMALNAPI-QGTAADIVKIAMLNVDRALREADLKSRMLLQVHDEIVLEIAP 850 Query: 639 TDEFNASMLYH 649 + + Sbjct: 851 GERAATEEIVR 861 >gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum] Length = 872 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 98/635 (15%), Positives = 189/635 (29%), Gaps = 164/635 (25%) Query: 35 FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRW 93 + D + + + + A + + + + R F L IP + Sbjct: 360 WVHDGDQANFYPFSSEEEVLKR-MSAWRDEGKAVWCFDQTRLYRKC-PRFFALGIP---F 414 Query: 94 ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153 + +A P + E L F + RN + Sbjct: 415 VFDATIAAYLLEPGHRDYLLENLA------------ARYFLTDTSDRPRLVRNV--LSKL 460 Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213 W D LE + S E L + + G +D + + ++ Sbjct: 461 WE--------DAVKE----GLLELVQSIEIPLGRILYQMEVLGIRIDRQALESARESIEA 508 Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLT 270 +L++E+ L G + +++ L+ + GL +T + L+ L Sbjct: 509 LARELEEEIYRLA-GSRFTILSPKQVGEILYGKLGLPTARKGKTGYSTDEETLTGLSGLH 567 Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330 P ++ R + ++ + +++ GRL G Sbjct: 568 PLPEKILAYRQ-MKKLLSTYVDPISRGVDAQGRLHGQF---------------------- 604 Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIE 385 +Q +T +S+P+ I +R C IA E + L+ AD + IE Sbjct: 605 ---------NQTVTATGRLSSSNPNLQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIE 655 Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445 R+LA + + + FE ED++ T F VT + R K + + Y A Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFGDP---VTPETRRKAKTINFGILYGMSA 712 Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505 + G+ + Sbjct: 713 FSLSL---DLGVEPPEAQAFIDRYFG---------------------------------- 735 Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565 +V L++ + + ++T + I+ RKRR Sbjct: 736 -------AFPKVGPLFDSILEEAKKT-GEVRTILGRKRR--------------------I 767 Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV-QAVSRDILAEGMMNATKAG--- 621 L D R YG ++ N V Q + D++ + M++ + Sbjct: 768 PELSAPD---------------RRSREYGERMAVNTVLQGSAADLIKKSMVDFGQVRKDR 812 Query: 622 ---YDIVLTVHDEIVCET-PDTDEFNASMLYHLMT 652 D+++ VHDE++ E D E + + LM Sbjct: 813 PEVGDLLVQVHDELLFEVREDNLEDASGTIRSLME 847 >gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 321 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 94/268 (35%), Gaps = 16/268 (5%) Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SD 362 +Q+ S+ P Q PR R H Q + +SDP+ I Sbjct: 21 MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGR 80 Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422 +R +A +G KL+ AD + IE R++A +A ++ L AF D++ T A F V Sbjct: 81 RIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELE 140 Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482 VT D R K + L Y A +A G++ V A Sbjct: 141 NVTTDMRRSAKAINFGLIYGMSAF---GLAKQIGVDRKQSQAYVDRYFARYP------GV 191 Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542 E A E F+ T R + +++ L + G A K Sbjct: 192 LDYMERTRAQAAEQGFVETIFGR-RLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIK 250 Query: 543 RRDVPLVYMKKDKN-NLILMLPSGRSLV 569 + V + ++ + ++L LV Sbjct: 251 KAMVAVNGWLEESGLDARVILQVHDELV 278 >gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] Length = 882 Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 71/457 (15%), Positives = 145/457 (31%), Gaps = 58/457 (12%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT---------I 192 R P + + F + + + L+ L++ EQ+ Y D + Sbjct: 436 GVKRAIPEDDDVF--FSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQM 493 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + ++++Q + G + ++L LF E L + Sbjct: 494 EIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEA-GEEFNINSPKQLGHILFEEMKLPVI 552 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T+T + +KL P+A V N LQ+ Sbjct: 553 KKTKTGYSTAVDVLEKLAPEAPIVAN----------------------------ILQYRQ 584 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 S+ + H Q +T + DP+ I +R Sbjct: 585 ISKIQSTYVVGLLDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQA 644 Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVT 425 + S EG ++ +D + IE RVLA + ++ AF+ G+D++ T R F++ + +VT Sbjct: 645 FVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVT 704 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K + + Y + G+ + + + Sbjct: 705 PNIRRQAKAVNFGIVYGISDYGLSQ---NIGITRKQARSFIDA------YFKEYPGVKKY 755 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + A + ++ T R ++ +S+ + + T G A K Sbjct: 756 MDEIVQTAKKQGYVETISHR-RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKIAM 814 Query: 546 VPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLN 581 + + + ++L L++ L Sbjct: 815 IKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLE 851 >gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309] gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309] Length = 908 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 91/512 (17%), Positives = 163/512 (31%), Gaps = 137/512 (26%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L L + D G D ++ + L+ + +E G + + Sbjct: 499 LTDMEMPLSVLLGQMEDIGIAADTSVLNGLSDELGKAVDA-AREGAWAAAGREVNLSSPK 557 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ------AIQVFNNRMRASRSAVLKL 291 +L+ LF GL T+T + L + A F + R +KL Sbjct: 558 QLQELLFDHFGLPKTKKTKTGYTTNADALADLHAKTSDEGGAGHDFLGFLLTHRD-RIKL 616 Query: 292 NTLVEA----MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +V++ + SDGR+ T Q+ Sbjct: 617 KQMVDSLSATVASDGRIHTT-------------------------------FSQVAAATG 645 Query: 348 TSITSDPDPLQIISD-----CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I + +R +A EG + L+ AD + IE R++A ++G++ ++A Sbjct: 646 RLASSDPNLQNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEA 705 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +GEDL+ T + F A+V+ ++R+ K L Y + +A+ G+ + Sbjct: 706 FNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSY---GLAAQLGIPVPE 762 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A L + R ++ Sbjct: 763 AAALRD--------------------------------------------RYFERFGKVR 778 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + L Q +G RR LP RS Sbjct: 779 DYLEGLVAQARADGYTQTMFGRRRY---------------LPDLRS-------------- 809 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCE 635 + + RE L I Q + DI+ M+N A +++ +HDE++ E Sbjct: 810 --SNRQRREMAERAALNAPI-QGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVE 866 Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 + + M + +PL Sbjct: 867 VAPGEAAAVEAIVRDRMATPVE--LSVPLDVA 896 >gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 887 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 71/457 (15%), Positives = 145/457 (31%), Gaps = 58/457 (12%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT---------I 192 R P + + F + + + L+ L++ EQ+ Y D + Sbjct: 441 GVKRAIPEDDDVF--FSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQM 498 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + ++++Q + G + ++L LF E L + Sbjct: 499 EIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEA-GEEFNINSPKQLGHILFEEMKLPVI 557 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T+T + +KL P+A V N LQ+ Sbjct: 558 KKTKTGYSTAVDVLEKLAPEAPIVAN----------------------------ILQYRQ 589 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 S+ + H Q +T + DP+ I +R Sbjct: 590 ISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQA 649 Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVT 425 + S EG ++ +D + IE RVLA + ++ AF+ G+D++ T R F++ + +VT Sbjct: 650 FVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVT 709 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K + + Y + G+ + + + Sbjct: 710 PNIRRQAKAVNFGIVYGISDYGLSQ---NIGITRKQARSFIDA------YFKEYPGVKKY 760 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + A + ++ T R ++ +S+ + + T G A K Sbjct: 761 MDEIVQTAKKQGYVETISHR-RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKIAM 819 Query: 546 VPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLN 581 + + + ++L L++ L Sbjct: 820 IKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLE 856 >gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG'] Length = 872 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 67/390 (17%), Positives = 134/390 (34%), Gaps = 54/390 (13%) Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233 LE + S E L + + G +D + + ++ +L++E+ L G + Sbjct: 469 LLELVQSIEIPLGRILYQMEVLGVRIDRQALESARESIEALSRELEEEIYRLA-GSRFTI 527 Query: 234 RCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290 +++ L+ + GL +T + L+ L P ++ R + Sbjct: 528 LSPKQVGEILYGKLGLPTARKGKTGYSTDEETLTRLSALHPLPEKILAYRQ-MKKLLSTY 586 Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350 ++ + +++ GRL G +Q +T Sbjct: 587 VDPIARGIDAQGRLHGQF-------------------------------NQTVTATGRLS 615 Query: 351 TSDPDPLQII-----SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405 +S+P+ I +R C IA E + L+ AD + IE R+LA + + + FE Sbjct: 616 SSNPNLQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERN 675 Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465 ED++ T F VT + R K + + Y A + + G+ Sbjct: 676 EDIHARTARLLFGDP---VTPETRRKAKTINFGILYGMSAFSLSQ---DLGVESQEAQAF 729 Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525 + + A + ++ E A + + T R K+ + + Sbjct: 730 ID------RYFGAFPKVGPLFDSILEEAKKTGEVRTILGR-KRRIPELFASDRRSREYGE 782 Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDK 555 + T+ G A K+ V ++KD+ Sbjct: 783 RMAVNTVLQGSAADLIKKSMVDFGQVRKDR 812 >gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B'] Length = 865 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 108/628 (17%), Positives = 199/628 (31%), Gaps = 142/628 (22%) Query: 57 LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS------ALK 110 +K E +++ + HNS R +L I IH I +A P ++ Sbjct: 351 VKNFFEAKNISKILHNSKDLRHILYRY---QINIHGNIFDTAIASYLINPLQSDYELSVA 407 Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170 A G +K Q + GK I + + W L K + Sbjct: 408 ATGYDIKHVDQLLGTGKNKITWAS--LASXIIVAQLGARASAMWTLQTAQLKELTDASM- 464 Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230 L+ E L + + G VD A + +D L+Q++ SL Sbjct: 465 ----LDLFYDIEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSLAD-EK 519 Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRM--RASR 285 + ++L LF + G+ T+T +L K +V R + Sbjct: 520 FNISSSKQLGLILFDKLGIPAGKKTKTGYSTAANILDKLKDKYVIVAKVLEYRQYKKLHS 579 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + V+ L L++ + ++ H +Q +T Sbjct: 580 TYVVGLLKLLD----------------------------------KNNKLHSTFNQTVTA 605 Query: 346 LPTSITSDPDPLQI-----ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399 +++P+ I + +R I S + + AD + IE RVLA ++ + Sbjct: 606 TGRISSAEPNLQNIPIRLALGKEIRRAFIPSNDDYVFLDADYSQIELRVLASLSADANMQ 665 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 +AF G D++ +T + F V VT+ QR K + + Y A + A ++ Sbjct: 666 RAFLEGIDIHTSTASEVFGV--DTVTQAQRNAAKAVNFGVVYGISAFSL---ADDIQVSN 720 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 ++ A + + +++ + Sbjct: 721 QEATEYIENYFAK--YPNVKHYLDSLITT------------------------------- 747 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 Q G ++ RKR V L + R Sbjct: 748 ---------SQATGYGVTLLNRKRNIVELFSSNFNT----------------KEYGKRIA 782 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639 +N + G + I +A+ I + T++ ++LTVHDE++ E + Sbjct: 783 MNMPIQ---------GTAADIIKKAM---IQVHNALKGTRST--LILTVHDELLLEVHKS 828 Query: 640 D-EFNASMLYHLMTSNPSWAKGLPLKAE 666 + E +L M S A +PL + Sbjct: 829 EIEHITKLLKTEMESAVKLA--VPLLVD 854 >gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] Length = 861 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 83/555 (14%), Positives = 166/555 (29%), Gaps = 136/555 (24%) Query: 134 CKGETHECLYDRNKPNH--REAWRLFGEYCKG-DVTVTREIFKRLE------PLSSKEQE 184 C + + KP E + C + +++F LE + E Sbjct: 412 CTLSKEDVFGKKGKPKLVVEEDAAAYAMQCAENLANIEQQLFDELEQKDMKELYDTIEMP 471 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244 + + + G V + + + L+ ++ G+ + ++L L+ Sbjct: 472 VVEVLYAMEKEGVHTSVETLQEIAEATGKKIEALNAQIYEYA-GMEFNINSPKQLAVVLY 530 Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304 E GL +T VL K + P + R + + L + + DG++ Sbjct: 531 DELGLPCGKK-RSTGADVLEKLKPVHPIISLLLEQR-KYQKIYSTYAVGLSKHILKDGKI 588 Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII---- 360 H +QI T +S+P+ I Sbjct: 589 -------------------------------HTIFNQIQTQTGRLSSSEPNLQNISVRDE 617 Query: 361 -SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419 +R +AS L+ AD + IE R+LA MA E+ ++AF G D++ T + F+V Sbjct: 618 EGKVIRKAFVASPQHTLMSADYSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDV 677 Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479 V + R K + + Y ++ G+ + + Sbjct: 678 DHDHVDSNMRRSAKTVNFGIVYGQSDF---GLSEQLGITMKEAKRFID------------ 722 Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539 + + + ++ AF + K + Sbjct: 723 -----------------------------KYFASYPNIKTFMDDTI-AFCEENGYVKTMF 752 Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599 R+R Y N+++Y+ + R Sbjct: 753 GRRR--------------------------YIKEINDKNYMMREFGK--RAAMNAP---- 780 Query: 600 NIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MT 652 +Q + D++ M++ K ++L +HDE++ + D + + M Sbjct: 781 --IQGSAADLIKLAMVHIYQTMKEKKVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQ 838 Query: 653 SNPSWAKGLPLKAEG 667 +PL AE Sbjct: 839 QAMQ--LRVPLIAEA 851 >gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] Length = 882 Score = 209 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 71/457 (15%), Positives = 145/457 (31%), Gaps = 58/457 (12%) Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT---------I 192 R P + + F + + + L+ L++ EQ+ Y D + Sbjct: 436 GVKRAIPEDDDVF--FSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQM 493 Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252 G VD + + ++++Q + G + ++L LF E L + Sbjct: 494 EIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEA-GEEFNINSPKQLGHILFEEMKLPVI 552 Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 T+T + +KL P+A V N LQ+ Sbjct: 553 KKTKTGYSTAVDVLEKLAPEAPIVAN----------------------------ILQYRQ 584 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 S+ + H Q +T + DP+ I +R Sbjct: 585 ISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQA 644 Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVT 425 + S EG ++ +D + IE RVLA + ++ AF+ G+D++ T R F++ + +VT Sbjct: 645 FVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVT 704 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 + R K + + Y + G+ + + + Sbjct: 705 PNIRRQAKAVNFGIVYGISDYGLSQ---NIGITRKQARSFIDA------YFKEYPGVKKY 755 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 + + A + ++ T R ++ +S+ + + T G A K Sbjct: 756 MDEIVQTAKKQGYVETISHR-RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKIAM 814 Query: 546 VPLVYMKKDKNNLI-LMLPSGRSLVYRDVGNNRSYLN 581 + + + ++L L++ L Sbjct: 815 IKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLE 851 >gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243] gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243] Length = 875 Score = 209 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 77/504 (15%), Positives = 146/504 (28%), Gaps = 132/504 (26%) Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239 + L + + G VD L E +L + + G + ++L Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIA-GEEFNLDSPKQL 534 Query: 240 KTWLFLETGLHLEDLTETTCQR---VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 LF GL + VL V R A + ++ L Sbjct: 535 AHILFEVLGLRTLRKNQRGYSTDAAVLKELSNDHELPALVLRYRELAKIKSTY-IDALPR 593 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 DG R H ++ +T +S+P+ Sbjct: 594 MRADDG-------------------------------RVHTSFNETVTTTGRLSSSEPNL 622 Query: 357 LQII-----SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410 I +R C + EG + AD + IE R+LA ++ ++ + AF +G D + Sbjct: 623 QNIPVRTEFGRQIRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHA 682 Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470 T +R F + V+ + R+ K + + Y A + + G+ Sbjct: 683 ATASRVFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQ---SLGI------------- 726 Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530 + +A+ E +P + L + + Sbjct: 727 ---PFGEAKEMIERYFEAYP----------------------------GVRAYLDRTIAE 755 Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTTTRQLTR 589 E G A R+ +P ++ G R+ +N Sbjct: 756 AKEKGYAETMFGRK---------------RHIPELKAANATQRGFGERTAMNHPM----- 795 Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EF 642 Q + DI+ M + ++L VHDE+ P+ + E Sbjct: 796 -------------QGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEE 842 Query: 643 NASMLYHLMTSNPSWAKGLPLKAE 666 ++++ +M +PL + Sbjct: 843 LSAIVKDVMEHIVD--LRVPLDVD 864 >gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] Length = 837 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 86/497 (17%), Positives = 159/497 (31%), Gaps = 75/497 (15%) Query: 86 LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145 LD W+ L +G+A+ +L A + Sbjct: 345 LDSDADLWVFDAKPLYHLALDR--GGIGKAIHFDG-------KLAAYLLNPS-ASGYAVK 394 Query: 146 NKPNHREAWRLFGEYCKGDVTVTREI------------FKRLEPLSSKEQELWYLDQTIN 193 N + F D V + ++L E L + + Sbjct: 395 NLAGEYDVPAAFTCEAAPDAGVLAALLDKLAAALDESGQRKLH--DEMELPLARVLADME 452 Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253 G+ VD + E + Q + G + ++L LF + GL Sbjct: 453 RIGFAVDADGIRAFGDSLRGELDGILQSIYE-EVGYEFNVNSPKQLGEALFDKLGLPPRK 511 Query: 254 LTETTCQRV---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310 T L S + +P Q+ R A + + L+ A +DGR+ T Sbjct: 512 KTSRGYSTDAATLESLRPYSPVIDQILKYRTYAKLLSTY-VEGLLSAQAADGRVHSTFI- 569 Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI-----ISDCVR 365 Q +++P+ I + +R Sbjct: 570 ------------------------------QTEARTGRISSTEPNLQNIPIRTELGSRLR 599 Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425 +A GK+LV AD + IE R+LA + G++ +AF G D++ +T A+ +++ ++VT Sbjct: 600 GFFVAGAGKELVDADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVT 659 Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485 R+ K + + Y GA + +++ +KT A Sbjct: 660 PQLRSASKAINFGIMYGKGAFSLS---KDLDVSVKEADAFLKTYLATFPK------VDGY 710 Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545 ++ HA E ++ T R ++A + S ++ + T G A K Sbjct: 711 MQDCIAHAKEKGYVETLFGR-RRALPELASSNFQVRASGERMARNTPIQGTAADIIKLAM 769 Query: 546 VPLVYMKKDKNNLILML 562 V + +D+ +L Sbjct: 770 VHVWQRLRDEKLEARLL 786 >gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] Length = 936 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 84/497 (16%), Positives = 153/497 (30%), Gaps = 133/497 (26%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 LS E + + G VD A L+ + + + + ++ G + + Sbjct: 527 LSDVEMPTAAVLAGMERVGIGVDSARLGALSDELGGDVERAREGALAV-LGREVNLSSPK 585 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------IQVFNNRMRASRSAVLK- 290 +L+ LF GL T+T + + L + F + A R + Sbjct: 586 QLQEVLFEHFGLPRTRRTKTGYTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLK 645 Query: 291 --LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348 +++L+ ++ DGR+ T Q+ Sbjct: 646 QMVDSLIASVADDGRIHTT-------------------------------FSQVAAATGR 674 Query: 349 SITSDPDPLQIISD-----CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF 402 ++DP+ I + +R +A G + L+ AD + IE R++A ++ ++ + AF Sbjct: 675 LASADPNLQNIPARSADGMRIRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAF 734 Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462 +GEDL+ T + F A+VT QR+ K L Y ++ G+ + Sbjct: 735 NSGEDLHRTMASMVFGTPVAEVTAQQRSRIKATSYGLAYGLSKY---GLSKQLGIPVPEA 791 Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522 A L + + R + + Sbjct: 792 AALRE--------------------------------------------RYFERFGGVRD 807 Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582 L +Q G RR LP L + Sbjct: 808 YLESLVDQARSRGYTETMYHRRRY---------------LP---------------DLGS 837 Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--IVLTVHDEIVCET 636 RQ RE L I Q + DI+ M+ +AG +++ +HDE++ E Sbjct: 838 DNRQ-RREMAERAALNAPI-QGSAADIMKLAMIGVVGALGRAGLRSRVLVQIHDELLVEV 895 Query: 637 PDTDEFNASMLYHL-MT 652 + M Sbjct: 896 APGERERVEEAVRQEMA 912 >gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] Length = 889 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 91/512 (17%), Positives = 162/512 (31%), Gaps = 137/512 (26%) Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237 L+ E L L + D G D ++ L+ + +E G + + Sbjct: 480 LTDMEMPLSVLLGQMEDIGIAADTSVLDGLSDELGKAVDA-AREGAWAAAGREVNLSSPK 538 Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ------AIQVFNNRMRASRSAVLKL 291 +L+ LF GL T+T + L + A F + R +KL Sbjct: 539 QLQELLFDHFGLPKTKKTKTGYTTNAEALADLHAKTSDEGGAGHDFLGFLLTHRD-RIKL 597 Query: 292 NTLVEA----MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347 +V++ + SDGR+ T Q+ Sbjct: 598 KQMVDSLSATVASDGRIHTT-------------------------------FSQVAAATG 626 Query: 348 TSITSDPDPLQIISD-----CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKA 401 +SDP+ I + +R +A EG + L+ AD + IE R++A ++G++ ++A Sbjct: 627 RLASSDPNLQNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEA 686 Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461 F +GEDL+ T + F A+V+ ++R+ K L Y + +A+ G+ + Sbjct: 687 FNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSY---GLAAQLGIPVPE 743 Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521 A L + R ++ Sbjct: 744 AAALRD--------------------------------------------RYFERFGKVR 759 Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581 + L Q +G RR LP RS Sbjct: 760 DYLEGLVAQARADGYTQTMFGRRRY---------------LPDLRS-------------- 790 Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCE 635 + + RE L I Q + DI+ M+N A +++ +HDE++ E Sbjct: 791 --SNRQRREMAERAALNAPI-QGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVE 847 Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666 + + M + +PL Sbjct: 848 VAPGEAAAVEAIVRDKMATPVE--LSVPLDVA 877 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 88/499 (17%), Positives = 165/499 (33%), Gaps = 70/499 (14%) Query: 14 IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73 +D G+ + + L +D PV + DC + L A+ +T + N+ Sbjct: 27 VDTETTGLDPH--TCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAILSTSGIKIFQNA 84 Query: 74 YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133 F+ L A + + L R +G P A ++ +++ ++ Sbjct: 85 KFDLQFLMALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLNEDLDKEEQ----- 139 Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------LSSKEQE 184 T E Y D + + K + P ++ E Sbjct: 140 ----TSNW--------QGELTESQILYAARDAEILLRLRKVMIPQILENHLTQIAGIEFR 187 Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL- 243 + RG +D L + + ER EL + R L ++ W Sbjct: 188 CVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYV------ERPLMQMSLWGE 241 Query: 244 -------FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296 F L L E ++ + L P Sbjct: 242 DVAINQNFESQQFVLNVLHEHGIPVAATAKQDLYPYRRHPL------------------- 282 Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356 ++ L + A+++ F P P R H QI +P+ Sbjct: 283 -------VKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNI 335 Query: 357 LQIISDC-VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415 QI D R+C A G+KL++AD + IE RV A ++G+ + A++ GEDL++ T + Sbjct: 336 QQIPRDSEFRACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASL 395 Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEE 474 + A++T +R K + L + GA Q+ A G+ ++ + Sbjct: 396 VAHKPIAEITPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKA 455 Query: 475 WEDAENFCRWMQENHPEHA 493 + + + ++ + P+ Sbjct: 456 YTGIHRWHQSIKAHLPKEG 474 >gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24] gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24] gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24] Length = 907 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 115/653 (17%), Positives = 179/653 (27%), Gaps = 156/653 (23%) Query: 34 AFGFDDHPVELWDCVHDP-----VMPQVLKEA--------LENTDVTIVAHNSYFERTVL 80 + V P L EA L + D V HN+ VL Sbjct: 353 TWALGTGSVTEVALAASDGKAAWFDPTELDEADETAFRSWLSDPDRPKVFHNAKGAMRVL 412 Query: 81 KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140 + LA P +AL L + L + Sbjct: 413 AEH---GWSVAGVGMDTALAAYLVKPGRRSFDLDALSL--------EYLHRELAPAAAAD 461 Query: 141 CLYDRNKPNHREAWRL-FGEYCKGDV--TVTREIFKRLEP--LSSKEQELWYLDQTINDR 195 EA L D+ T + L E L + Sbjct: 462 GQLAFGADEGAEAEVLMVQARAILDLGETFESRLADVGAADLLRDMELPTSALLARMERH 521 Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255 G D + Q+ + +E + G + ++L+ LF E L T Sbjct: 522 GIAADREHLQAMEQMFAGAVQQAVKEAHA-AAGREFNLGSPKQLQEVLFGELNLPKTKKT 580 Query: 256 ETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312 +T + L Q + V R R + + L++ + +DGR+ T Sbjct: 581 KTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADGRIHTT----- 635 Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII-----SDCVRSC 367 +Q + ++DP+ I +R Sbjct: 636 --------------------------FNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRG 669 Query: 368 VIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426 + EG + L+ AD + IE RV+A ++ + +AF +GEDL+ T A+ F+V + V Sbjct: 670 FVVGEGFESLMTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDA 729 Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486 + R K M L Y A + + L Sbjct: 730 EMRRKIKAMSYGLAYGLSAFGLSQ---QLNIEAAEARGL--------------------- 765 Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546 R + + L + ++ G RR Sbjct: 766 -----------------------MDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRY 802 Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606 LP LN+ RQ RE L I Q + Sbjct: 803 ---------------LP---------------DLNSDNRQ-RREAAERMALNAPI-QGTA 830 Query: 607 RDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MT 652 DI+ M+N KA ++L VHDEIV E + A L M Sbjct: 831 ADIVKIAMLNVDKALREADLKSRMLLQVHDEIVLEIAPGERAAAEELVRREMA 883 >gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] Length = 879 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 82/516 (15%), Positives = 168/516 (32%), Gaps = 126/516 (24%) Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225 + E L+ + E ++ + + G V ++ D L+ + +L Sbjct: 466 IKSLEEENMLDLYKNIEIKVARVLANMEFEGIHVSKKALDEMSHEFDERIKVLEGSIYTL 525 Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285 G + ++L LF + GL + T+T + ++L Sbjct: 526 A-GSEFNIASPKQLGVVLFEDLGLPVVKKTKTGYSTAVEVLEQL---------------- 568 Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345 + + + +++ ++ +++ R + H +Q +T Sbjct: 569 ----QYKHDI--------IPLIMEYRTLTKLNSTYAKGL-VKDITREGKIHTRYEQTLTQ 615 Query: 346 LPTSITSDPDPLQII-----SDCVRSCVI-ASEGKKLVVADLAGIEARVLAWMAGEQWKL 399 + +P+ I +R I AS + ++ D + IE RVLA +A ++ + Sbjct: 616 TGRLSSVNPNLQNIPTRIEEGKKIRKAFIPASNDRVILSIDYSQIELRVLAHIAQDKGMI 675 Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459 AF+ D++ T + V +VT R K + + Y +++ G+ Sbjct: 676 DAFKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVNFGIVYGISDF---GLSNNLGITR 732 Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519 + E++ + + + A E H V Sbjct: 733 KRAKEFI------EKYLETFKGVDKYMTDIVKFAKE------------------HGYVET 768 Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579 L+N +RR +P + KN +I L N R Sbjct: 769 LYN-------------------RRRSLPEI---NAKNKIIANL------------NARIA 794 Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILA