PSIBLAST alignment of GI: 254781193 and protein with PDB id: 1d8y
>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 100/699 (14%), Positives = 203/699 (29%), Gaps = 167/699 (23%)
Query: 10 TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKE 59
T S +++ ++ +F + HD ++LK
Sbjct: 35 TDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84
Query: 60 ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL 116
LE+ V N ++R +L +++ T++ + + ++ E
Sbjct: 85 LLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDSLAER- 141
Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
L + E ++ A G Y D VT ++ ++
Sbjct: 142 -----------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMW 190
Query: 177 PLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
P K L + I G +D + H ++ + + +L+++ +
Sbjct: 191 PDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEI 250
Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
+ ++L+T LF + G+ T +T + VL P + R
Sbjct: 251 AG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYR- 308
Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
++ + L +N T + TGR S QN+P +
Sbjct: 309 GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR--- 365
Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
+R IA E +V AD + IE R++A ++ ++ L A
Sbjct: 366 ----------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTA 403
Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
F G+D++ T A F + VT +QR K + G++
Sbjct: 404 FAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGMS--- 446
Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
A + ++ + +++ V E
Sbjct: 447 ---------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 479
Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
++ + GR L D+ ++
Sbjct: 480 ERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGARR 513
Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
+ +Q + DI+ M+ +++ VHDE+V E
Sbjct: 514 AAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFE 564
Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
D + ++ LM + +PL E + +
Sbjct: 565 VHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601