PSIBLAST alignment of GI: 254781193 and protein with PDB id: 2hhq
>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair Position Length = 580
>gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position Length = 580
>gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair Position Length = 580
Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats.
Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)
Query: 26 EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
D ++ A + + + L + S F+ V
Sbjct: 32 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85
Query: 83 CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
+++ + L+ A + V A KM++ + +
Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137
Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
R P+ + R E+ + + EQ L + + G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196
Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
VD + + + + ++Q + L + ++L LF + L + T+
Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255
Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
+T VL + + R + + L++ + D + T+
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314
Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
++TGR S QN+P + +R + SE
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349
Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
+ AD + IE RVLA +A + ++AF D++ T F V+ +VT + R
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409
Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
K + G++ A
Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427
Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
+ + + V ++ + G
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472
Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
R D+ + R +Q + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510
Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
M++ + ++L VHDE++ E P + L +M + +PLK
Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568
Query: 666 EGYESKRY 673
+ + +
Sbjct: 569 DYHYGSTW 576