HHsearch alignment of GI: 254781194 and MMDB domain: 1hh1_A_
>1hh1_A (A:) Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus}
Probab=97.48 E-value=0.00092 Score=43.58 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCCHHCCHHHHHHHHHHHHHHCCCEEEEEECCC---CCCCCCEEEEECCCCEEEEEEECC-----CCCCCHHHHHHHHHH
Q ss_conf 950120599999999999997898899971489---887662799915991999997278-----988698999999999
Q gi|254781194|r 1 MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFIN---QRGCPDRLIITPNGAHFWVEMKTS-----RGRLSNAQKRVIATL 72 (98)
Q Consensus 1 ~~~~~m~E~~ie~~i~~~~k~~g~~~~k~~~~g---~~G~PDli~~~~~g~~~fIEvK~~-----~gkls~~Q~~~~~~l 72 (98)
|+++..+-..-|+.+.+++.+.|+.++.....| +.|-||++... ++...|||||+- +-..++.|...+..+
T Consensus 1 M~~~~~~G~~~E~~a~~~L~~~Gy~ilr~~~~n~~~~~gEiDIIa~~-~~~lvfVEVKtr~~~~~~~~v~~~k~~kl~~~ 79 (143)
T 1hh1_A 1 MNAKKRKGSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALK-NGVIILIEMKSRKDIEGKIYVRREQAEGIIEF 79 (143)
T ss_dssp --------CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEEE-TTEEEEEEECCEECTTSCEEECHHHHHHHHHH
T ss_pred CCCHHCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEECCC-CCEEEEEEEEECCCCCCCEEEEHHHHHHHHHH
T ss_conf 96001044478999999998757049995068877769994402467-74399999885157655365208888999999
Q ss_pred HH-CCCEEEE
Q ss_conf 97-8986999
Q gi|254781194|r 73 LL-YHQKVQV 81 (98)
Q Consensus 73 ~~-~G~~~~V 81 (98)
.. .+...++
T Consensus 80 a~~~~~~~~i 89 (143)
T 1hh1_A 80 ARKSGGSLFL 89 (143)
T ss_dssp HHHHTCEEEE
T ss_pred HHHHCHHEEE
T ss_conf 9860713178