Query gi|254781194|ref|YP_003065607.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs 107 out of 430
Neff 6.2
Searched_HMMs 23785
Date Wed Jun 1 01:51:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781194.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ob8_A Holliday-junction resol 97.4 0.00092 3.9E-08 42.7 8.9 69 8-77 6-80 (135)
2 2wcw_A HJC; type II restrictio 97.3 0.0037 1.6E-07 39.1 10.5 80 4-84 4-89 (139)
3 1gef_A Holliday junction resol 97.2 0.0026 1.1E-07 40.0 9.4 73 7-83 4-80 (123)
4 2eo0_A Hypothetical protein ST 97.1 0.0028 1.2E-07 39.8 8.4 81 2-83 5-93 (147)
5 1hh1_A Holliday junction resol 96.9 0.0038 1.6E-07 39.1 8.0 79 4-83 4-91 (143)
6 2fco_A Recombination protein U 94.8 0.25 1.1E-05 28.4 11.0 78 6-84 32-137 (200)
7 1zp7_A Recombination protein U 94.4 0.32 1.4E-05 27.7 11.4 78 6-84 34-139 (206)
8 3fov_A UPF0102 protein RPA0323 93.2 0.46 1.9E-05 26.8 7.9 61 10-73 25-93 (134)
9 1cw0_A Protein (DNA mismatch e 93.1 0.55 2.3E-05 26.4 8.3 74 7-84 19-115 (155)
10 2vld_A NUCS, UPF0286 protein p 92.1 0.21 8.6E-06 28.9 4.9 90 5-94 124-222 (251)
11 3dnx_A Uncharacterized protein 91.2 0.92 3.9E-05 25.1 7.5 78 5-83 10-87 (153)
12 3hrl_A Endonuclease-like prote 87.5 1.6 6.9E-05 23.6 6.5 75 3-85 1-81 (104)
13 3h1t_A Type I site-specific re 82.4 3.1 0.00013 22.0 8.0 59 4-62 22-101 (590)
14 2ixs_A SDAI restriction endonu 75.8 4 0.00017 21.3 4.9 62 34-96 228-295 (323)
15 1kl7_A Threonine synthase; thr 69.7 4 0.00017 21.4 3.7 39 57-95 185-224 (514)
16 1vsr_A Protein (VSR endonuclea 66.2 5.4 0.00023 20.6 3.7 71 10-84 3-96 (136)
17 1t0f_A Transposon TN7 transpos 59.9 6 0.00025 20.3 3.0 48 38-85 116-169 (276)
18 2v9k_A Uncharacterized protein 59.5 11 0.00047 18.7 7.2 75 7-83 315-392 (530)
19 1vb3_A Threonine synthase; PLP 40.7 15 0.00064 17.9 2.6 37 57-96 158-197 (428)
20 1xmx_A Hypothetical protein VC 39.9 22 0.00094 16.9 3.4 45 38-83 294-343 (385)
21 3hdc_A Thioredoxin family prot 38.6 24 0.001 16.7 4.7 44 32-79 111-154 (158)
22 1rkq_A Hypothetical protein YI 35.2 27 0.0012 16.4 5.3 13 15-27 30-42 (282)
23 3ira_A Conserved protein; meth 27.3 38 0.0016 15.6 2.9 23 33-55 101-123 (173)
24 2noc_A Putative periplasmic pr 26.5 39 0.0016 15.5 3.8 32 5-36 48-79 (99)
25 3oa4_A Glyoxalase, BH1468 prot 25.2 41 0.0017 15.4 5.1 81 9-96 17-98 (161)
26 3af5_A Putative uncharacterize 24.3 43 0.0018 15.3 6.9 62 32-94 94-162 (651)
27 3mpo_A Predicted hydrolase of 23.2 45 0.0019 15.2 6.7 13 15-27 30-42 (279)
28 3niw_A Haloacid dehalogenase-l 21.7 48 0.002 15.0 6.8 31 15-45 30-72 (279)
29 2xr1_A Cleavage and polyadenyl 21.3 49 0.0021 14.9 3.1 80 9-94 51-157 (640)
No 1
>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} SCOP: c.52.1.18 PDB: 1ob9_A
Probab=97.42 E-value=0.00092 Score=42.67 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCC--CCCCCCEEEEECCCCEEEEEEECCCCC---CCHHHHHHHHHHH-HCCC
Q ss_conf 99999999999997898899971489--887662799915991999997278988---6989999999999-7898
Q gi|254781194|r 8 EAKLEKRLVKGSKKLDCLVFKTQFIN--QRGCPDRLIITPNGAHFWVEMKTSRGR---LSNAQKRVIATLL-LYHQ 77 (98)
Q Consensus 8 E~~ie~~i~~~~k~~g~~~~k~~~~g--~~G~PDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l~-~~G~ 77 (98)
=+..|+.++.++...|+.+++....+ ..|.||++.. +++..+|||||+-.+. ++..|...+..+. ..|.
T Consensus 6 G~~~Er~~~~~L~~~G~~v~r~~~s~~~~~g~iDiiA~-~~~~~~~IEvKs~~~~~iy~~~eqv~~l~~f~~~~g~ 80 (135)
T 1ob8_A 6 GKNAERELVSILRGEGFNAVRIPTSNSSPNPLPDIFAT-KGNTLLSIECKSTWENKVKVKEHQVRKLLDFLSMFTM 80 (135)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCC-----CCSCSEEEE-ETTEEEEEEEEEESSSEEEECHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEE-CCCEEEEEEEEECCCCEEECCHHHHHHHHHHHHHCCC
T ss_conf 79999999999996995899946778888899888995-3999999999963498252699999999999996385
No 2
>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A
Probab=97.26 E-value=0.0037 Score=39.13 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=55.9
Q ss_pred HHCCHHHHHHHHHHHHHHCCCEEEEEECCCCC--CCCCEEEEECCCCEEEEEEECCCCC---CCHHHHHHHHHH-HHCCC
Q ss_conf 12059999999999999789889997148988--7662799915991999997278988---698999999999-97898
Q gi|254781194|r 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQR--GCPDRLIITPNGAHFWVEMKTSRGR---LSNAQKRVIATL-LLYHQ 77 (98)
Q Consensus 4 ~~m~E~~ie~~i~~~~k~~g~~~~k~~~~g~~--G~PDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l-~~~G~ 77 (98)
+-.+=+..|+.|+..+...|+.+......|.. +.||++.. +++..+.||||.-+.. +++.|...+... +..|.
T Consensus 4 ~r~KG~~~ERel~~~l~~~G~~v~R~~~sg~~~~~~pDlia~-~~~~~~~IEvK~~~~~~iy~~~e~~eql~~~a~~~g~ 82 (139)
T 2wcw_A 4 GKSKGTRFERDLLVELWKAGFAAIRVAGAGVSPFPCPDIVAG-NGRTYLAIEVKMRKELPLYLSADEVEQLVTFARGFGA 82 (139)
T ss_dssp ---CHHHHHHHHHHHHHHTTCEEEEBTTSSSCSSCCCSEEEE-CSSCEEEEEEEECSSSCEEEEHHHHHHHHHHHHHHTC
T ss_pred CHHHCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEE-CCCCEEEEEEEEECCCEEEECHHHHHHHHHHHHHCCC
T ss_conf 000034999999999986897699845566888899989953-7992899999872287053399999999999985799
Q ss_pred EEEEECC
Q ss_conf 6999839
Q gi|254781194|r 78 KVQVLSS 84 (98)
Q Consensus 78 ~~~Vv~s 84 (98)
..++++-
T Consensus 83 ~p~la~K 89 (139)
T 2wcw_A 83 EAYVALK 89 (139)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
T ss_conf 4799999
No 3
>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} SCOP: c.52.1.18 PDB: 1ipi_A
Probab=97.23 E-value=0.0026 Score=40.03 Aligned_cols=73 Identities=12% Similarity=0.081 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCC---CCHHHHHHHHH-HHHCCCEEEEE
Q ss_conf 599999999999997898899971489887662799915991999997278988---69899999999-99789869998
Q gi|254781194|r 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR---LSNAQKRVIAT-LLLYHQKVQVL 82 (98)
Q Consensus 7 ~E~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~-l~~~G~~~~Vv 82 (98)
+=+..|+.++..+...|+.+... ++ +|-||++... ++.++.||+|+.+.. ++..|...+-. .+..|....++
T Consensus 4 KG~~~ERel~~~l~~~Gf~v~R~--~g-Sg~~Dlia~~-~~~~~~IEvKs~~~~~iyv~~eq~~~l~~~a~~fg~~p~ia 79 (123)
T 1gef_A 4 KGAQAERELIKLLEKHGFAVVRS--AG-SKKVDLVAGN-GKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVLA 79 (123)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEB--GG-GSSCSEEEEC-SSCEEEEEEEEESSSCEEECHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEC--CC-CCCCCEEECC-CCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHCCCEEEEE
T ss_conf 42089999999998589139986--79-9998877016-98089997576568548878999999999999649979999
Q ss_pred C
Q ss_conf 3
Q gi|254781194|r 83 S 83 (98)
Q Consensus 83 ~ 83 (98)
.
T Consensus 80 ~ 80 (123)
T 1gef_A 80 V 80 (123)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 4
>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=97.08 E-value=0.0028 Score=39.80 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=56.9
Q ss_pred CCHHCCHHHHHHHHHHHHHHCCCEEEEEECC-C--CCCCCCEEEEECCCCEEEEEEECC-CCC---CCHHHHHHHHHHH-
Q ss_conf 5012059999999999999789889997148-9--887662799915991999997278-988---6989999999999-
Q gi|254781194|r 2 RTDYLSEAKLEKRLVKGSKKLDCLVFKTQFI-N--QRGCPDRLIITPNGAHFWVEMKTS-RGR---LSNAQKRVIATLL- 73 (98)
Q Consensus 2 ~~~~m~E~~ie~~i~~~~k~~g~~~~k~~~~-g--~~G~PDli~~~~~g~~~fIEvK~~-~gk---ls~~Q~~~~~~l~- 73 (98)
.++--+=+..|+.|++.+...|..+...... + ....||++... ++..+.||||.- +++ +++.|...+....
T Consensus 5 ~~sr~KG~~~ERelv~~L~~~Gf~~~R~~~Sg~~~~~~~pDlia~~-~~~~~~IEvKs~k~~~~iy~~~eq~e~l~~fa~ 83 (147)
T 2eo0_A 5 NSNKSRGSSVERYIVSRLRDKGFAVIRAPASGSKRKDHVPDIIALK-SGVIILIEVKSRKNGQKIYIEKEQAEGIREFAK 83 (147)
T ss_dssp -------CHHHHHHHHHHHHTTCEEECC-----CCGGGSCSEEEEE-TTEEEEEEEEECCCC-CEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEECC-CCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 0344461799999999999679104880344688878998189417-984999999973689722259999999999999
Q ss_pred HCCCEEEEEC
Q ss_conf 7898699983
Q gi|254781194|r 74 LYHQKVQVLS 83 (98)
Q Consensus 74 ~~G~~~~Vv~ 83 (98)
..|....+++
T Consensus 84 ~~G~~p~ia~ 93 (147)
T 2eo0_A 84 RSGGELFLGV 93 (147)
T ss_dssp HHTCEEEEEE
T ss_pred HCCCCEEEEE
T ss_conf 7799489999
No 5
>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=96.94 E-value=0.0038 Score=39.07 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=56.1
Q ss_pred HHCCHHHHHHHHHHHHHHCCCEEEEEECCCC---CCCCCEEEEECCCCEEEEEEECCCC-----CCCHHHHHHHHHHH-H
Q ss_conf 1205999999999999978988999714898---8766279991599199999727898-----86989999999999-7
Q gi|254781194|r 4 DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQ---RGCPDRLIITPNGAHFWVEMKTSRG-----RLSNAQKRVIATLL-L 74 (98)
Q Consensus 4 ~~m~E~~ie~~i~~~~k~~g~~~~k~~~~g~---~G~PDli~~~~~g~~~fIEvK~~~g-----kls~~Q~~~~~~l~-~ 74 (98)
..=+=+..|+.+++.+...|+.+......|. .-.||++... ++..+.||+|.-.+ .++..|..-+..+. .
T Consensus 4 ~r~kG~~~ERelv~~l~~~Gf~v~R~p~SG~~~~~~~pDivA~~-~~~~~~IEvKs~k~~~~~lyv~~eqve~L~~f~~~ 82 (143)
T 1hh1_A 4 KKRKGSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALK-NGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARK 82 (143)
T ss_dssp -----CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEEE-TTEEEEEEECCEECTTSCEEECHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEC-CCEEEEEEEEECCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 00114499999999998599408980345788878887389854-98699999998148861177679999999999997
Q ss_pred CCCEEEEEC
Q ss_conf 898699983
Q gi|254781194|r 75 YHQKVQVLS 83 (98)
Q Consensus 75 ~G~~~~Vv~ 83 (98)
.|+..+++.
T Consensus 83 fg~~~~iav 91 (143)
T 1hh1_A 83 SGGSLFLGV 91 (143)
T ss_dssp HTCEEEEEE
T ss_pred CCCEEEEEE
T ss_conf 499899999
No 6
>2fco_A Recombination protein U (penicillin-binding protein related factor A); flexibility, hydrolase; 1.40A {Geobacillus kaustophilus HTA426} PDB: 1y1o_A
Probab=94.80 E-value=0.25 Score=28.36 Aligned_cols=78 Identities=13% Similarity=0.004 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCCEEEEECCCCEEEEEEECCC------
Q ss_conf 059999999999999789889997148---------------------98876627999159919999972789------
Q gi|254781194|r 6 LSEAKLEKRLVKGSKKLDCLVFKTQFI---------------------NQRGCPDRLIITPNGAHFWVEMKTSR------ 58 (98)
Q Consensus 6 m~E~~ie~~i~~~~k~~g~~~~k~~~~---------------------g~~G~PDli~~~~~g~~~fIEvK~~~------ 58 (98)
-.|..|.....-+....=+.+.|...| -++.-||...++. |+++..|.|.-.
T Consensus 32 ~lE~~IN~tn~~Y~~~~iA~I~KkPtPi~ivkv~~~~r~~a~I~~Ayf~~kSt~DY~Gvyk-G~~I~FEAKeT~nkt~Fp 110 (200)
T 2fco_A 32 TLEDDLNATNEYYRERGIAVIHKKPTPVQIVRVDYPKRSAAVITEAYFRQASTTDYNGVYR-GKYIDFEAKETKNKTAFP 110 (200)
T ss_dssp SHHHHHHHHHHHHHHTTSCEEEECCCCC-----------------CCCCCCSSCSEEEEET-TEEEEEEEEEESCSSEEE
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEC-CEEEEEECCCCCCCCCCC
T ss_conf 8999999999999977979999727880798505765566515779955788787004777-899999843335676232
Q ss_pred -CCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf -88698999999999978986999839
Q gi|254781194|r 59 -GRLSNAQKRVIATLLLYHQKVQVLSS 84 (98)
Q Consensus 59 -gkls~~Q~~~~~~l~~~G~~~~Vv~s 84 (98)
....++|...++.+..+|+.++++=.
T Consensus 111 l~nI~~HQi~~L~~~~~~gGiaFiiI~ 137 (200)
T 2fco_A 111 LKNFHAHQIRHMEQVVAHGGICFAILR 137 (200)
T ss_dssp GGGSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 220749999999999978998999999
No 7
>1zp7_A Recombination protein U; recombination,DNA-binding protein,resolvase, DNA binding protein; 2.25A {Bacillus subtilis} PDB: 1rzn_A
Probab=94.36 E-value=0.32 Score=27.74 Aligned_cols=78 Identities=15% Similarity=0.021 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCCEEEEECCCCEEEEEEECCC------
Q ss_conf 059999999999999789889997148---------------------98876627999159919999972789------
Q gi|254781194|r 6 LSEAKLEKRLVKGSKKLDCLVFKTQFI---------------------NQRGCPDRLIITPNGAHFWVEMKTSR------ 58 (98)
Q Consensus 6 m~E~~ie~~i~~~~k~~g~~~~k~~~~---------------------g~~G~PDli~~~~~g~~~fIEvK~~~------ 58 (98)
..|..|.....-+....=+.+.|...| -++.-||...++. |+++..|.|.-.
T Consensus 34 ~lE~~IN~tn~~Y~~~~iAvI~KkPtPi~ivkv~~~~r~~a~I~~Ayf~~kSt~DY~Gvyk-G~~I~FEAKeT~nkt~Fp 112 (206)
T 1zp7_A 34 TLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIYK-GRYIDFEAKETKNKTSFP 112 (206)
T ss_dssp CHHHHHHHHHHHHHHTTSCEEEECCCCCCSCC-------------CCCCCCSSCSEEEEET-TEEEEEEEEECCCSSEEE
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEC-CEEEEEECCCCCCCCCCC
T ss_conf 8999999999999977968999607881899505765666446678964578787103677-899999823445767225
Q ss_pred -CCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf -88698999999999978986999839
Q gi|254781194|r 59 -GRLSNAQKRVIATLLLYHQKVQVLSS 84 (98)
Q Consensus 59 -gkls~~Q~~~~~~l~~~G~~~~Vv~s 84 (98)
....++|...++.+..+|+.++++=+
T Consensus 113 l~nI~~HQi~~L~~~~~~gGIaFiii~ 139 (206)
T 1zp7_A 113 LQNFHDHQIEHMKQVKAQDGICFVIIS 139 (206)
T ss_dssp GGGSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 243759999999999978998999999
No 8
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009}
Probab=93.20 E-value=0.46 Score=26.83 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCCEEEE--EECCCCCCCCCEEEEECCCCEEEEEEECC------CCCCCHHHHHHHHHHH
Q ss_conf 9999999999978988999--71489887662799915991999997278------9886989999999999
Q gi|254781194|r 10 KLEKRLVKGSKKLDCLVFK--TQFINQRGCPDRLIITPNGAHFWVEMKTS------RGRLSNAQKRVIATLL 73 (98)
Q Consensus 10 ~ie~~i~~~~k~~g~~~~k--~~~~g~~G~PDli~~~~~g~~~fIEvK~~------~gkls~~Q~~~~~~l~ 73 (98)
.-|.....++++.|+..+. +.++ .|==|||.. .++...|||||+- ...+++.|+..+.+..
T Consensus 25 ~gE~~A~~~L~~~Gy~Il~rN~r~~--~GEIDLIa~-~~~~lvFVEVK~R~~~~~~~~~v~~~K~~ri~~aA 93 (134)
T 3fov_A 25 SAEASAADYLERQGYRILARRFKTR--CGEIDLVAQ-RDALVAFVEVKARGNVDDAAYAVTPRQQSRIVAAA 93 (134)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEEET--TEEEEEEEE-ETTEEEEEEEEEC------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCC--CCCCCEEEE-ECCEEEEEEEEEECCCCCHHHCCCHHHHHHHHHHH
T ss_conf 9999999999987999901013579--996088998-49999999999703789976718999999999999
No 9
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=93.06 E-value=0.55 Score=26.36 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECC---------CCCCCHHHHH----------
Q ss_conf 599999999999997898899971489887662799915991999997278---------9886989999----------
Q gi|254781194|r 7 SEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS---------RGRLSNAQKR---------- 67 (98)
Q Consensus 7 ~E~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~---------~gkls~~Q~~---------- 67 (98)
+++..|..+.++|.+.|..+. ...+.-+|-||+ ++ |+- =+.|||-.- ...|..+...
T Consensus 19 kdT~pE~~v~~~L~~~G~r~r-~~~~~~pg~pDi-v~-~~~-k~aIfvdGcfWH~~~c~~~~~p~~n~~~W~~K~~~n~~ 94 (155)
T 1cw0_A 19 RDTAIEKRLASLLTGQGLAFR-VQDASLPGRPDF-VV-DEY-RCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVE 94 (155)
T ss_dssp SSCHHHHHHHHHHHHTTCCCE-ECCTTSTTCCSE-EE-GGG-TEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEE-ECCCCCCCEEEE-EE-CCC-CEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999997898899-546778983559-96-476-23675462177522434478998748899999877788
Q ss_pred ----HHHHHHHCCCEEEEECC
Q ss_conf ----99999978986999839
Q gi|254781194|r 68 ----VIATLLLYHQKVQVLSS 84 (98)
Q Consensus 68 ----~~~~l~~~G~~~~Vv~s 84 (98)
....|+++|+.+..++.
T Consensus 95 RD~~~~~~L~~~GW~vlriWE 115 (155)
T 1cw0_A 95 RDRRDISRLQELGWRVLIVWE 115 (155)
T ss_dssp HHHHHHHHHHHTTCEEEEEEH
T ss_pred HHHHHHHHHHHCCCEEEEEEC
T ss_conf 699999999979798999848
No 10
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=92.08 E-value=0.21 Score=28.90 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=58.1
Q ss_pred HCCHHHHHHHHHHHHHHCC-CE-EEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCH-HHH-HHHHHHHH-CCCE-
Q ss_conf 2059999999999999789-88-99971489887662799915991999997278988698-999-99999997-8986-
Q gi|254781194|r 5 YLSEAKLEKRLVKGSKKLD-CL-VFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSN-AQK-RVIATLLL-YHQK- 78 (98)
Q Consensus 5 ~m~E~~ie~~i~~~~k~~g-~~-~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gkls~-~Q~-~~~~~l~~-~G~~- 78 (98)
...|+++|..|.+.....| |+ ...-..+-..|.=|++....+|.++.||+|+.++.... .|. .+.+.+++ .+-+
T Consensus 124 ~G~E~dLq~~L~~n~~~i~~G~~~v~rE~~t~~G~iDll~~D~~g~~VvIElKr~~~~~~~V~QL~rYv~~lr~~~~~~V 203 (251)
T 2vld_A 124 TGSEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKADLHAVSQMKRYVDSLKEEYGENV 203 (251)
T ss_dssp --CHHHHHHHHHHCGGGTCTTCEEEEEEEEETTEEEEEEEECTTSCEEEEEECSSCBCHHHHHHHHHHHHHHHHHHCSCE
T ss_pred EECHHHHHHHHHHCHHHHCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64099999999869998678978999988428896558999079999999997047986079999999999874069982
Q ss_pred --EEEECC-HHHHHHHHHH
Q ss_conf --999839-8999999998
Q gi|254781194|r 79 --VQVLSS-TEEVDGFLRM 94 (98)
Q Consensus 79 --~~Vv~s-~e~v~~~i~~ 94 (98)
+.||.+ .+++++++++
T Consensus 204 rGIlvA~~it~~a~~ll~~ 222 (251)
T 2vld_A 204 RGILVAPSLTEGAKKLLEK 222 (251)
T ss_dssp EEEEEESCBCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 6999868699899999997
No 11
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=91.15 E-value=0.92 Score=25.07 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=56.3
Q ss_pred HCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 2059999999999999789889997148988766279991599199999727898869899999999997898699983
Q gi|254781194|r 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS 83 (98)
Q Consensus 5 ~m~E~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv~ 83 (98)
......|.+.+...+...|..++.-.++..--=-|++.+-++|.++.||+|....-.+.. +.|.+.+.-..--++.+.
T Consensus 10 ~~p~q~i~RGv~R~l~~~g~a~l~E~~l~~grRaDv~al~~~Gei~IVEiKSS~aDF~~D-~KW~~Yl~~cDrfyfAv~ 87 (153)
T 3dnx_A 10 LQPGQRLARGVARHLRAHGFVSVEEFVPARGLRVDVMGLGPKGEIWVIECKSSRADFQAD-AKWQGYLEWCDRYFWAVD 87 (153)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEEEEECTTCCEEEEEECSSHHHHHHT-TTGGGGGGGCSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCHHHHCCC-CCHHHHHHHHHEEEEECC
T ss_conf 777889999999999978995666761699977889998899969999984778896154-553778876324566147
No 12
>3hrl_A Endonuclease-like protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090}
Probab=87.55 E-value=1.6 Score=23.61 Aligned_cols=75 Identities=15% Similarity=0.030 Sum_probs=46.4
Q ss_pred CHHCCHHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCC--C-CCCHHHHHHHHHHHHCC
Q ss_conf 01205999999999999978---988999714898876627999159919999972789--8-86989999999999789
Q gi|254781194|r 3 TDYLSEAKLEKRLVKGSKKL---DCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSR--G-RLSNAQKRVIATLLLYH 76 (98)
Q Consensus 3 ~~~m~E~~ie~~i~~~~k~~---g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~--g-kls~~Q~~~~~~l~~~G 76 (98)
++.|+|+ |..+-..++.. |+.+..=...| +.++|+. + |+.+ +.||+=.+- + ..+. ...-..|+.+|
T Consensus 1 ~~~~t~a--E~~L~~~Lr~~~~~g~k~~~Q~~ig-~y~~Df~-~-~~~k-l~IE~DG~~H~~~~~~D--~~Rd~~L~~~G 72 (104)
T 3hrl_A 1 SNAMSEA--EAKLWQHLRAGRLNGYKFRRQQPMG-NYIVDFM-C-VTPK-LIVEADGGQHAEQAVYD--HARTVYLNSLG 72 (104)
T ss_dssp --CCCHH--HHHHHHHHGGGTTTTCCEEEEEEET-TEEEEEE-E-TTTT-EEEEEEC-------CCC--HHHHHHHHHTT
T ss_pred CCCCCHH--HHHHHHHHHHCCCCCCEEEECCCCC-CEEEEEE-C-CCCC-EEEEEECCCCCCCHHHH--HHHHHHHHHCC
T ss_conf 9989999--9999999984675798777106778-7687075-5-7669-89999884104421038--99999999899
Q ss_pred CEEEEECCH
Q ss_conf 869998398
Q gi|254781194|r 77 QKVQVLSST 85 (98)
Q Consensus 77 ~~~~Vv~s~ 85 (98)
+.+.-+..-
T Consensus 73 w~VlR~~~~ 81 (104)
T 3hrl_A 73 FTVLRFWNH 81 (104)
T ss_dssp CEEEEEEHH
T ss_pred CEEEEEEHH
T ss_conf 989997199
No 13
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=82.44 E-value=3.1 Score=21.98 Aligned_cols=59 Identities=17% Similarity=0.013 Sum_probs=39.7
Q ss_pred HHCCHHHHHHHHHH-HHHHCCCEE-----E---EE-------E----CCCCCCCCCEEEEECCCCE-EEEEEECCCCCCC
Q ss_conf 12059999999999-999789889-----9---97-------1----4898876627999159919-9999727898869
Q gi|254781194|r 4 DYLSEAKLEKRLVK-GSKKLDCLV-----F---KT-------Q----FINQRGCPDRLIITPNGAH-FWVEMKTSRGRLS 62 (98)
Q Consensus 4 ~~m~E~~ie~~i~~-~~k~~g~~~-----~---k~-------~----~~g~~G~PDli~~~~~g~~-~fIEvK~~~gkls 62 (98)
-.++|++.-+.+++ +|+..||-. . .+ . ..|..|.||+.++..+|.. .-||+|+.+..+.
T Consensus 22 ~~~~e~~t~~~~id~~l~~agw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vl~~~ng~pl~viE~K~~~~~~~ 101 (590)
T 3h1t_A 22 MALNEADTCRVYVTPKLKESGWENNPSAITEQYTFTDGRVQFKGSKVQRGEQKRADYLLKYTRDFPIAVVEAKPENSPVG 101 (590)
T ss_dssp CSCCHHHHHHHTHHHHHHHTTTTSTTCEEEEEEECCCCCEEEETTEEEECCCCEEEEEEEEETTEEEEEEEECCTTSCGG
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHH
T ss_conf 78999999999748999977999887620689951576365268756668878664899867992999997678978989
No 14
>2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus}
Probab=75.79 E-value=4 Score=21.32 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=43.3
Q ss_pred CCCCCCEEEEECCCCE-EEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEC-----CHHHHHHHHHHHH
Q ss_conf 8876627999159919-9999727898869899999999997898699983-----9899999999862
Q gi|254781194|r 34 QRGCPDRLIITPNGAH-FWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLS-----STEEVDGFLRMLE 96 (98)
Q Consensus 34 ~~G~PDli~~~~~g~~-~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv~-----s~e~v~~~i~~l~ 96 (98)
+.-.||+++..++..+ +|||.=+..|-.++.-+..+.+|-. ++.+.+++ +....++++.+|+
T Consensus 228 h~klPDvVL~d~~~~wL~~IEaVtS~GPv~~~R~~eL~~l~~-~~~~glvfVTAF~dR~~fkk~~~eiA 295 (323)
T 2ixs_A 228 HGRMPDLVLHDKVRKWLFLMEAVKSKGPFDEERHRTLRELFA-TPVAGLVFVNCFENREAMRQWLPELA 295 (323)
T ss_dssp TCCCCSEEEEETTTTEEEEEEECCTTCCCCHHHHHHHHHHTC-BTTBEEEEEEEESSHHHHGGGGGGCC
T ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHC
T ss_conf 567998899828999899999974779989899999999973-68888699985689899999999740
No 15
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, monomer, lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1
Probab=69.74 E-value=4 Score=21.35 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHH
Q ss_conf 898869899999999997898699983-989999999986
Q gi|254781194|r 57 SRGRLSNAQKRVIATLLLYHQKVQVLS-STEEVDGFLRML 95 (98)
Q Consensus 57 ~~gkls~~Q~~~~~~l~~~G~~~~Vv~-s~e~v~~~i~~l 95 (98)
|.|+.|+-|+.++.........+.-|. ++||++.+++.+
T Consensus 185 P~g~vS~iQ~~Qmtt~~~~Nv~~i~v~G~FDDcQ~~VK~~ 224 (514)
T 1kl7_A 185 PTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAI 224 (514)
T ss_dssp ETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 6878754368874122799889999547869987999998
No 16
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli K12} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=66.20 E-value=5.4 Score=20.57 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECC---------CCCCCHHHHH-------------
Q ss_conf 999999999997898899971489887662799915991999997278---------9886989999-------------
Q gi|254781194|r 10 KLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS---------RGRLSNAQKR------------- 67 (98)
Q Consensus 10 ~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~---------~gkls~~Q~~------------- 67 (98)
..|..+.+.|.+.|-+ |+...+.-+|-||+ ++ |.-+ +.|+|-.- ...|..++..
T Consensus 3 kpE~~vr~~L~~~G~r-yR~~~k~lpg~PDi-v~-~k~k-~aIfVdGcFWH~h~c~~~~~Pktn~~fW~~Ki~~N~~RD~ 78 (136)
T 1vsr_A 3 AIEKRLASLLTGQGLA-FRVQDASLPGRPDF-VV-DEYR-CVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDR 78 (136)
T ss_dssp CCCHHHHHHHHHTTCC-CEESCTTSTTCCSE-EE-GGGT-EEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCE-EEECCCCCCCCCCE-EE-CCCC-EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 5999999999978985-89637889999889-74-5875-8999847503689976578998758999999988899899
Q ss_pred -HHHHHHHCCCEEEEECC
Q ss_conf -99999978986999839
Q gi|254781194|r 68 -VIATLLLYHQKVQVLSS 84 (98)
Q Consensus 68 -~~~~l~~~G~~~~Vv~s 84 (98)
..+.|+++|+.|..++.
T Consensus 79 ~~~~~L~~~Gw~Vl~iWE 96 (136)
T 1vsr_A 79 RDISRLQELGWRVLIVWE 96 (136)
T ss_dssp HHHHHHHHTTCEEEEEEH
T ss_pred HHHHHHHHCCCEEEEEEE
T ss_conf 999999988898999960
No 17
>1t0f_A Transposon TN7 transposition protein TNSA; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli} SCOP: a.4.5.27 c.52.1.16 PDB: 1f1z_A
Probab=59.93 E-value=6 Score=20.31 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=31.9
Q ss_pred CCEEEEECCCC--EEEEEEECCC--CCCCHH--HHHHHHHHHHCCCEEEEECCH
Q ss_conf 62799915991--9999972789--886989--999999999789869998398
Q gi|254781194|r 38 PDRLIITPNGA--HFWVEMKTSR--GRLSNA--QKRVIATLLLYHQKVQVLSST 85 (98)
Q Consensus 38 PDli~~~~~g~--~~fIEvK~~~--gkls~~--Q~~~~~~l~~~G~~~~Vv~s~ 85 (98)
||+++...+|. .+.+|+|... .+++-. ........+..|..+.++...
T Consensus 116 ~Dflv~~~~g~~~~~a~~vK~~~~l~~~r~~eKleier~yw~~~Gi~~~ivTe~ 169 (276)
T 1t0f_A 116 TDFLVDCKDGPFEQFAIQVKPAAALQDERTLEKLELERRYWQQKQIPWFIFTDK 169 (276)
T ss_dssp EEEEEEESSSSCSEEEEEECCGGGGGCHHHHHHHHHHHHHHHHHTCCEEEECGG
T ss_pred CCEEEEEECCCEEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 357999977971499999323455218658999999999999749808998367
No 18
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens}
Probab=59.46 E-value=11 Score=18.72 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHH-HHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCC-CCHHHHH-HHHHHHHCCCEEEEEC
Q ss_conf 5999999999999-97898899971489887662799915991999997278988-6989999-9999997898699983
Q gi|254781194|r 7 SEAKLEKRLVKGS-KKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR-LSNAQKR-VIATLLLYHQKVQVLS 83 (98)
Q Consensus 7 ~E~~ie~~i~~~~-k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gk-ls~~Q~~-~~~~l~~~G~~~~Vv~ 83 (98)
-+.-||.-|.+.+ +..++.-++|++.|+--+-=+++ .+||.+++|++.|..+ ++..+.. ..++++.....+.|-+
T Consensus 315 ~~~SVee~I~~~i~~~f~~~~~~fh~sGREDiDVRmL--G~GRPFv~Ei~nP~r~~~~~~~l~~l~~~iN~~~~~V~v~~ 392 (530)
T 2v9k_A 315 LESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTL--GNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQVRD 392 (530)
T ss_dssp SSCCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEE--EEEEEEEEEEESCSCCCCCHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEC--CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7778899988999987089834896357566641322--79982699946885477888999999999850499589995
No 19
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=40.71 E-value=15 Score=17.92 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHHH
Q ss_conf 89886989999999999789869998---39899999999862
Q gi|254781194|r 57 SRGRLSNAQKRVIATLLLYHQKVQVL---SSTEEVDGFLRMLE 96 (98)
Q Consensus 57 ~~gkls~~Q~~~~~~l~~~G~~~~Vv---~s~e~v~~~i~~l~ 96 (98)
|.|+.|+-|+.++.. .|..++++ -++||++.+++++-
T Consensus 158 P~g~vS~~Q~~Qmtt---~~~nv~~i~V~G~fDDcq~lvk~~~ 197 (428)
T 1vb3_A 158 PRGKISPLQEKLFCT---LGGNIETVAIDGDFDACQALVKQAF 197 (428)
T ss_dssp ETTCSCHHHHHHHHS---CCTTEEEEEEESCHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 887762677764001---4587789816899789999999985
No 20
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=39.89 E-value=22 Score=16.93 Aligned_cols=45 Identities=18% Similarity=0.072 Sum_probs=24.0
Q ss_pred CCEEEEECCCCEEEEEEECCCCCC-CHHHHHHH----HHHHHCCCEEEEEC
Q ss_conf 627999159919999972789886-98999999----99997898699983
Q gi|254781194|r 38 PDRLIITPNGAHFWVEMKTSRGRL-SNAQKRVI----ATLLLYHQKVQVLS 83 (98)
Q Consensus 38 PDli~~~~~g~~~fIEvK~~~gkl-s~~Q~~~~----~~l~~~G~~~~Vv~ 83 (98)
=|+++. .+++.++||||+.+-+- ......-+ +.|-......+.|-
T Consensus 294 lDV~~~-~~~~l~~iECKtg~~~~~~~~~l~kl~~~~~~lgG~~~~~~LVs 343 (385)
T 1xmx_A 294 LDVATV-VNNKLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVS 343 (385)
T ss_dssp EEEEEE-ETTEEEEEEEESSCCCC-CCCHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred EEEEEE-ECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 689999-79999999967788786548899999999998298433499999
No 21
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=38.64 E-value=24 Score=16.74 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=28.2
Q ss_pred CCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 898876627999159919999972789886989999999999789869
Q gi|254781194|r 32 INQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKV 79 (98)
Q Consensus 32 ~g~~G~PDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~ 79 (98)
.+-.|+|+.+++.++|+..+...- ....+....++.|+.+.+..
T Consensus 111 ~~v~~~P~~~lid~~G~i~~~~~G----~~~~~~~~~~~~l~~L~g~~ 154 (158)
T 3hdc_A 111 YGANRLPDTFIVDRKGIIRQRVTG----GIEWDAPKVVSYLKSLEGHH 154 (158)
T ss_dssp TTCCSSSEEEEECTTSBEEEEEES----CCCTTSHHHHHHHHTTC---
T ss_pred CCCCCCCEEEEECCCCEEEEEEEC----CCCCCHHHHHHHHHHCCCCC
T ss_conf 599836879999799999999969----99989999999999778988
No 22
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=35.19 E-value=27 Score=16.41 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=6.8
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 9999997898899
Q gi|254781194|r 15 LVKGSKKLDCLVF 27 (98)
Q Consensus 15 i~~~~k~~g~~~~ 27 (98)
..+.++..|..+.
T Consensus 30 ~l~~l~~~gi~v~ 42 (282)
T 1rkq_A 30 AIAAARARGVNVV 42 (282)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHCCCEEE
T ss_conf 9999998899999
No 23
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, PSI, MCSG, protein structure initiative; 2.10A {Methanosarcina mazei GO1}
Probab=27.29 E-value=38 Score=15.62 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.3
Q ss_pred CCCCCCCEEEEECCCCEEEEEEE
Q ss_conf 98876627999159919999972
Q gi|254781194|r 33 NQRGCPDRLIITPNGAHFWVEMK 55 (98)
Q Consensus 33 g~~G~PDli~~~~~g~~~fIEvK 55 (98)
|+.|+|=-+++.|+|+.+|.=-=
T Consensus 101 g~gGwPl~vfltPdg~Pf~~gTY 123 (173)
T 3ira_A 101 GRGGWPLNIIMTPGKKPFFAGTY 123 (173)
T ss_dssp SCCCSSEEEEECTTSCEEEEESS
T ss_pred CCCCCCEEEEECCCCCEEEEECC
T ss_conf 89997835566489962476315
No 24
>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} SCOP: d.230.6.1
Probab=26.50 E-value=39 Score=15.53 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=27.2
Q ss_pred HCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 20599999999999997898899971489887
Q gi|254781194|r 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRG 36 (98)
Q Consensus 5 ~m~E~~ie~~i~~~~k~~g~~~~k~~~~g~~G 36 (98)
..+..++++.|-+..+..|+.+|.+++.+..|
T Consensus 48 ~~t~~d~~~~Ls~kAd~~GA~yy~Iis~~~~~ 79 (99)
T 2noc_A 48 EMSPLDAREDLIKKADEKGADVVVLTSGQTEN 79 (99)
T ss_dssp CCCHHHHHHHHHHHHHHTCCSEEECCSCCSSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 89979999999999998499989999728999
No 25
>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-2; 1.94A {Bacillus halodurans}
Probab=25.23 E-value=41 Score=15.39 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEECCHHH
Q ss_conf 999999999999789889997148988766279991599199999727898869899999999997-8986999839899
Q gi|254781194|r 9 AKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLL-YHQKVQVLSSTEE 87 (98)
Q Consensus 9 ~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~-~G~~~~Vv~s~e~ 87 (98)
.++++.+.-+.+.+|............|+.-. +...|.. .||+=.|.+.-++... .+.. -++..+++..+++
T Consensus 17 ~Dle~a~~fY~~~LG~~~~~~~~~~~~~~~~~--~~~~g~~-~ieLiep~~~~~~~~~----~~~~~g~G~~Hiaf~VdD 89 (161)
T 3oa4_A 17 TSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIA--FLEIGES-KIELLEPLSEESPIAK----FIQKRGEGIHHIAIGVKS 89 (161)
T ss_dssp SCHHHHHHHHHHTSCCEEEEEEEEGGGTEEEE--EEEETTE-EEEEEEESSTTSHHHH----HHHHHCSEEEEEEEECSC
T ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCEEEE--EECCCCC-EEEECCCCCCCCCCCC----CCCCCCCCCEEEECCCCC
T ss_conf 99999999999850997878771267865999--7226520-2784156567995201----123589851685733689
Q ss_pred HHHHHHHHH
Q ss_conf 999999862
Q gi|254781194|r 88 VDGFLRMLE 96 (98)
Q Consensus 88 v~~~i~~l~ 96 (98)
++..++.|+
T Consensus 90 i~~~~~~L~ 98 (161)
T 3oa4_A 90 IEERIQEVK 98 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 26
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=24.25 E-value=43 Score=15.28 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=41.5
Q ss_pred CCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECC-------HHHHHHHHHH
Q ss_conf 89887662799915991999997278988698999999999978986999839-------8999999998
Q gi|254781194|r 32 INQRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSS-------TEEVDGFLRM 94 (98)
Q Consensus 32 ~g~~G~PDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv~s-------~e~v~~~i~~ 94 (98)
|-.+|+-|+ .|.++-.-+.||.|.|+--....-....+-....||...|+++ ++++++++..
T Consensus 94 ~~~~~~~~~-~f~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~s~~~~~~~~~~~~ 162 (651)
T 3af5_A 94 PKEAEITNI-AFDPSVGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVRTPPLQSQTIYSIRQILQT 162 (651)
T ss_dssp CGGGCCCEE-EEETTTTEEEEEESSTTTTSCTTSHHHHHHHHHHCSEEEEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCEEE-EECCCCCEEEEEECCCEEEECCCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 976671258-974897279999679746864762689999997498568986799972789999999997
No 27
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis}
Probab=23.22 E-value=45 Score=15.16 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=6.7
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 9999997898899
Q gi|254781194|r 15 LVKGSKKLDCLVF 27 (98)
Q Consensus 15 i~~~~k~~g~~~~ 27 (98)
....+++.|..+.
T Consensus 30 al~~l~~~g~~v~ 42 (279)
T 3mpo_A 30 AVQAAKAQGIKVV 42 (279)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHCCCEEE
T ss_conf 9999998899999
No 28
>3niw_A Haloacid dehalogenase-like hydrolase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=21.68 E-value=48 Score=14.98 Aligned_cols=31 Identities=0% Similarity=-0.148 Sum_probs=14.5
Q ss_pred HHHHHHHCCCEEEEEEC------------CCCCCCCCEEEEEC
Q ss_conf 99999978988999714------------89887662799915
Q gi|254781194|r 15 LVKGSKKLDCLVFKTQF------------INQRGCPDRLIITP 45 (98)
Q Consensus 15 i~~~~k~~g~~~~k~~~------------~g~~G~PDli~~~~ 45 (98)
....+++.|..+.=.++ .+..+.||.+++..
T Consensus 30 al~~l~~~g~~v~i~TGR~~~~~~~~~~~~~~~~~~~~~i~~n 72 (279)
T 3niw_A 30 TLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYN 72 (279)
T ss_dssp HHHHHHHTTCEEEEECSSCHHHHHHHHHHTTGGGTTCEEEEGG
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 9999997899999999998899999998717666787089958
No 29
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=21.31 E-value=49 Score=14.93 Aligned_cols=80 Identities=10% Similarity=0.201 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-----------------CCCCCCCCCEEEEECCCCEEEEEEECCC---CCCCHHHHHH
Q ss_conf 9999999999997898899971-----------------4898876627999159919999972789---8869899999
Q gi|254781194|r 9 AKLEKRLVKGSKKLDCLVFKTQ-----------------FINQRGCPDRLIITPNGAHFWVEMKTSR---GRLSNAQKRV 68 (98)
Q Consensus 9 ~~ie~~i~~~~k~~g~~~~k~~-----------------~~g~~G~PDli~~~~~g~~~fIEvK~~~---gkls~~Q~~~ 68 (98)
.++-++|.+.+|+. .+.+.. -|-.+|+-|+ .|.++-.-+.||.|.|+ |+-....+
T Consensus 51 ~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~~~~~~~~-- 125 (640)
T 2xr1_A 51 GNIIRNLAKELRTR--IAMRPDPRVLATPEDSISIIEEVVPKESVISSY-YFDPDSGEVIIEAEKPGLVIGKHGATLR-- 125 (640)
T ss_dssp THHHHHHHHHHTSC--EEEEECGGGCCCHHHHHHHHHHHSCGGGCEEEE-EECTTTSEEEEEESSHHHHHCSSSHHHH--
T ss_pred CHHHHHHHHHHCCE--EEECCCHHHCCCHHHHHHHHHHHCCCCCCCEEE-EECCCCCEEEEEECCCEEEECCCCHHHH--
T ss_conf 43999999986254--898379145189999999999758965683058-9738973899996797556567735799--
Q ss_pred HHHHHHCCCEEEEECC-------HHHHHHHHHH
Q ss_conf 9999978986999839-------8999999998
Q gi|254781194|r 69 IATLLLYHQKVQVLSS-------TEEVDGFLRM 94 (98)
Q Consensus 69 ~~~l~~~G~~~~Vv~s-------~e~v~~~i~~ 94 (98)
+-....||...|+++ ++++++++..
T Consensus 126 -~~~~~~~w~~~~~~~~~~~s~~~~~~~~~~~~ 157 (640)
T 2xr1_A 126 -EITKQIGWIPKVVRTPPIKSRTVKNIREFMRN 157 (640)
T ss_dssp -HHHHHHCSEEEEEECCSSCCHHHHHHHHHHHH
T ss_pred -HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -99997598368997799972789999999998
Done!