HHSEARCH alignment of GI: 254781194 and SCOP domain: d1hh1a_

Alignment

Probab=97.09  E-value=0.0017  Score=39.75  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCC---CCCCCEEEEECCCCEEEEEEECCCC-----CCCHHHHHHHHHHH-HCCCEE
Q ss_conf             99999999999978988999714898---8766279991599199999727898-----86989999999999-789869
Q gi|254781194|r    9 AKLEKRLVKGSKKLDCLVFKTQFINQ---RGCPDRLIITPNGAHFWVEMKTSRG-----RLSNAQKRVIATLL-LYHQKV   79 (98)
Q Consensus         9 ~~ie~~i~~~~k~~g~~~~k~~~~g~---~G~PDli~~~~~g~~~fIEvK~~~g-----kls~~Q~~~~~~l~-~~G~~~   79 (98)
                      +..|+.++..+...|+.+....+.|.   .=.||++... ++.++.||||...+     .++..|..-+..+. ..|+..
T Consensus         1 s~~ERel~~~l~~~gFavvRapgSGs~~~~~~pDlvA~~-~~~~~~IEvKst~~~~~~iyi~~eqve~L~~f~~~fG~~p   79 (132)
T d1hh1a_           1 SAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALK-NGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSL   79 (132)
T ss_dssp             CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEEE-TTEEEEEEECCEECTTSCEEECHHHHHHHHHHHHHHTCEE
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECC-CCEEEEEEEEEECCCCCCEEECHHHHHHHHHHHHHCCCEE
T ss_conf             978999999998589449994567888778998689526-9879999998615776438987999999999999759959


Q ss_pred             EEEC
Q ss_conf             9983
Q gi|254781194|r   80 QVLS   83 (98)
Q Consensus        80 ~Vv~   83 (98)
                      +++.
T Consensus        80 ~iav   83 (132)
T d1hh1a_          80 FLGV   83 (132)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9999

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Hjc-like
domain: Archaeal Holliday junction resolvase Hjc
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]