HHSEARCH alignment of GI: 254781194 and SCOP domain: d1rzna_

Alignment
>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
Probab=94.43  E-value=0.18  Score=27.83  Aligned_cols=76  Identities=14%  Similarity=0.024  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEEECC---------C------------CCCCCCEEEEECCCCEEEEEEECCC-------
Q ss_conf             59999999999999789889997148---------9------------8876627999159919999972789-------
Q gi|254781194|r    7 SEAKLEKRLVKGSKKLDCLVFKTQFI---------N------------QRGCPDRLIITPNGAHFWVEMKTSR-------   58 (98)
Q Consensus         7 ~E~~ie~~i~~~~k~~g~~~~k~~~~---------g------------~~G~PDli~~~~~g~~~fIEvK~~~-------   58 (98)
                      .|..|.....-+..+.-+.+.|...|         .            ++.-||...++ .|+++..|.|.-.       
T Consensus         2 LE~~In~tn~~Y~~~~~A~I~K~PtPi~~vkv~~~~r~~~~I~~Ayf~~kSt~DY~Gvy-kG~~I~FEAKeT~nktsFpl   80 (165)
T d1rzna_           2 LEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIY-KGRYIDFEAKETKNKTSFPL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHTTSCEEEECCCCEEC---------------CEECCCSSCSEEEEE-TTEEEEEEEEECCCSSEEEG
T ss_pred             HHHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEE-CCEEEEEECCCCCCCCCCCH
T ss_conf             78999999999997798999970788389962577666534444796357888702477-78999998335467672233


Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             8869899999999997898699983
Q gi|254781194|r   59 GRLSNAQKRVIATLLLYHQKVQVLS   83 (98)
Q Consensus        59 gkls~~Q~~~~~~l~~~G~~~~Vv~   83 (98)
                      ....++|...++++...|+.++++=
T Consensus        81 ~ni~~HQi~~L~~~~~~gGI~F~ii  105 (165)
T d1rzna_          81 QNFHDHQIEHMKQVKAQDGICFVII  105 (165)
T ss_dssp             GGSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             4377999999999997899899999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: RecU-like
domain: Recombination protein U (RecU)/PBP related factor A (PrfA)
species: Bacillus subtilis [TaxId: 1423]