Query gi|254781194|ref|YP_003065607.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs 107 out of 430
Neff 6.2
Searched_HMMs 13730
Date Wed Jun 1 11:50:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781194.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ob8a_ c.52.1.18 (A:) Hollida 97.5 0.00067 4.9E-08 42.1 10.3 67 9-76 2-73 (124)
2 d1hh1a_ c.52.1.18 (A:) Archaea 97.1 0.0017 1.2E-07 39.7 8.5 74 9-83 1-83 (132)
3 d1gefa_ c.52.1.18 (A:) Archaea 96.0 0.0075 5.4E-07 35.9 6.1 73 8-84 5-81 (120)
4 d1rzna_ c.52.1.28 (A:) Recombi 94.4 0.18 1.3E-05 27.8 11.4 76 7-83 2-105 (165)
5 d1y1oa_ c.52.1.28 (A:) Recombi 94.0 0.22 1.6E-05 27.3 11.0 77 7-84 3-107 (168)
6 d1vsra_ c.52.1.15 (A:) Very sh 89.0 0.82 6E-05 24.0 8.4 69 11-83 2-93 (134)
7 d1kl7a_ c.79.1.1 (A:) Threonin 68.9 2.4 0.00018 21.2 3.7 39 57-95 184-223 (511)
8 d1t0fa2 c.52.1.16 (A:7-168) Tn 54.5 6.7 0.00049 18.6 3.8 48 37-84 106-159 (162)
9 d1zj8a1 d.58.36.1 (A:327-406) 49.9 9.3 0.00068 17.8 5.1 52 45-97 12-74 (80)
10 d1vb3a1 c.79.1.1 (A:1-428) Thr 37.4 11 0.00078 17.4 2.6 37 57-96 158-197 (428)
11 d1zj8a2 d.58.36.1 (A:10-161) S 36.2 14 0.001 16.7 3.1 49 48-96 83-142 (152)
12 d1dcea2 b.7.4.1 (A:242-350) Ra 35.3 5.6 0.00041 19.1 0.9 43 22-65 13-57 (109)
13 d1b04a_ d.142.2.2 (A:) Adenyla 34.2 16 0.0012 16.3 5.5 48 49-96 217-268 (312)
14 d2akja1 d.58.36.1 (A:346-430) 29.4 20 0.0014 15.8 3.5 28 47-74 17-44 (85)
15 d1xmxa_ c.52.1.26 (A:) Hypothe 26.9 22 0.0016 15.6 5.7 45 38-83 294-343 (385)
No 1
>d1ob8a_ c.52.1.18 (A:) Holliday-junction resolvase SSO1176 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=97.51 E-value=0.00067 Score=42.09 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCC--CCCCCCEEEEECCCCEEEEEEECCCCC---CCHHHHHHHHHHHHCC
Q ss_conf 9999999999997898899971489--887662799915991999997278988---6989999999999789
Q gi|254781194|r 9 AKLEKRLVKGSKKLDCLVFKTQFIN--QRGCPDRLIITPNGAHFWVEMKTSRGR---LSNAQKRVIATLLLYH 76 (98)
Q Consensus 9 ~~ie~~i~~~~k~~g~~~~k~~~~g--~~G~PDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l~~~G 76 (98)
+..|+.++..+...|+.++...++| .++.||++... ++.++.||+|...+. ++..|...+..+....
T Consensus 2 ~~~ERelv~~l~~~gf~vvR~~gSGs~~~~~pDllA~~-~~~~~~IEvKst~~~kiyi~~eqie~L~~f~~~f 73 (124)
T d1ob8a_ 2 KNAERELVSILRGEGFNAVRIPTSNSSPNPLPDIFATK-GNTLLSIECKSTWENKVKVKEHQVRKLLDFLSMF 73 (124)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCC-----CCSCSEEEEE-TTEEEEEEEEEESSSEEEECHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEC-CCEEEEEEEEECCCCEEEECHHHHHHHHHHHHHC
T ss_conf 56999999999869943999235789888898789857-9869999998535985998799999999999971
No 2
>d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=97.09 E-value=0.0017 Score=39.75 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC---CCCCCEEEEECCCCEEEEEEECCCC-----CCCHHHHHHHHHHH-HCCCEE
Q ss_conf 99999999999978988999714898---8766279991599199999727898-----86989999999999-789869
Q gi|254781194|r 9 AKLEKRLVKGSKKLDCLVFKTQFINQ---RGCPDRLIITPNGAHFWVEMKTSRG-----RLSNAQKRVIATLL-LYHQKV 79 (98)
Q Consensus 9 ~~ie~~i~~~~k~~g~~~~k~~~~g~---~G~PDli~~~~~g~~~fIEvK~~~g-----kls~~Q~~~~~~l~-~~G~~~ 79 (98)
+..|+.++..+...|+.+....+.|. .=.||++... ++.++.||||...+ .++..|..-+..+. ..|+..
T Consensus 1 s~~ERel~~~l~~~gFavvRapgSGs~~~~~~pDlvA~~-~~~~~~IEvKst~~~~~~iyi~~eqve~L~~f~~~fG~~p 79 (132)
T d1hh1a_ 1 SAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALK-NGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSL 79 (132)
T ss_dssp CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEEE-TTEEEEEEECCEECTTSCEEECHHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECC-CCEEEEEEEEEECCCCCCEEECHHHHHHHHHHHHHCCCEE
T ss_conf 978999999998589449994567888778998689526-9879999998615776438987999999999999759959
Q ss_pred EEEC
Q ss_conf 9983
Q gi|254781194|r 80 QVLS 83 (98)
Q Consensus 80 ~Vv~ 83 (98)
+++.
T Consensus 80 ~iav 83 (132)
T d1hh1a_ 80 FLGV 83 (132)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
No 3
>d1gefa_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=96.04 E-value=0.0075 Score=35.94 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCC---CCHHHHHHHHHHH-HCCCEEEEEC
Q ss_conf 99999999999997898899971489887662799915991999997278988---6989999999999-7898699983
Q gi|254781194|r 8 EAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR---LSNAQKRVIATLL-LYHQKVQVLS 83 (98)
Q Consensus 8 E~~ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l~-~~G~~~~Vv~ 83 (98)
=+..|+.+++.++..|+.+... ++ +|-||++... ++..+.||||+-... .++.|....-... ..|....+++
T Consensus 5 G~~~ERel~~~l~~~G~~~~R~--~~-sg~~D~~a~~-~~~~~~IEvK~~~~~~~~~~~~~~eql~~~a~~~g~~P~la~ 80 (120)
T d1gefa_ 5 GAQAERELIKLLEKHGFAVVRS--AG-SKKVDLVAGN-GKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVLAV 80 (120)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEB--GG-GSSCSEEEEC-SSCEEEEEEEEESSSCEEECHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEC--CC-CCCCCCCCCC-CCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 4399999999998679769998--78-7788721378-883699983771046524299999999999985799369999
Q ss_pred C
Q ss_conf 9
Q gi|254781194|r 84 S 84 (98)
Q Consensus 84 s 84 (98)
-
T Consensus 81 K 81 (120)
T d1gefa_ 81 K 81 (120)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 4
>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
Probab=94.43 E-value=0.18 Score=27.83 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECC---------C------------CCCCCCEEEEECCCCEEEEEEECCC-------
Q ss_conf 59999999999999789889997148---------9------------8876627999159919999972789-------
Q gi|254781194|r 7 SEAKLEKRLVKGSKKLDCLVFKTQFI---------N------------QRGCPDRLIITPNGAHFWVEMKTSR------- 58 (98)
Q Consensus 7 ~E~~ie~~i~~~~k~~g~~~~k~~~~---------g------------~~G~PDli~~~~~g~~~fIEvK~~~------- 58 (98)
.|..|.....-+..+.-+.+.|...| . ++.-||...++ .|+++..|.|.-.
T Consensus 2 LE~~In~tn~~Y~~~~~A~I~K~PtPi~~vkv~~~~r~~~~I~~Ayf~~kSt~DY~Gvy-kG~~I~FEAKeT~nktsFpl 80 (165)
T d1rzna_ 2 LEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIY-KGRYIDFEAKETKNKTSFPL 80 (165)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEECCCCEEC---------------CEECCCSSCSEEEEE-TTEEEEEEEEECCCSSEEEG
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEE-CCEEEEEECCCCCCCCCCCH
T ss_conf 78999999999997798999970788389962577666534444796357888702477-78999998335467672233
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 8869899999999997898699983
Q gi|254781194|r 59 GRLSNAQKRVIATLLLYHQKVQVLS 83 (98)
Q Consensus 59 gkls~~Q~~~~~~l~~~G~~~~Vv~ 83 (98)
....++|...++++...|+.++++=
T Consensus 81 ~ni~~HQi~~L~~~~~~gGI~F~ii 105 (165)
T d1rzna_ 81 QNFHDHQIEHMKQVKAQDGICFVII 105 (165)
T ss_dssp GGSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 4377999999999997899899999
No 5
>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=94.00 E-value=0.22 Score=27.31 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECC---------C------------CCCCCCEEEEECCCCEEEEEEECC-C------
Q ss_conf 59999999999999789889997148---------9------------887662799915991999997278-9------
Q gi|254781194|r 7 SEAKLEKRLVKGSKKLDCLVFKTQFI---------N------------QRGCPDRLIITPNGAHFWVEMKTS-R------ 58 (98)
Q Consensus 7 ~E~~ie~~i~~~~k~~g~~~~k~~~~---------g------------~~G~PDli~~~~~g~~~fIEvK~~-~------ 58 (98)
.|..|.....-+..+.-+.+.|...| . ++.-||.+.++ .|+++..|.|.- +
T Consensus 3 lE~~In~tn~~Y~~~~~A~I~K~ptPi~~vkvd~~~r~~a~i~~ayf~~kSt~DY~Gvy-~G~~I~FEAKeT~~ktsFpl 81 (168)
T d1y1oa_ 3 LEDDLNATNEYYRERGIAVIHKKPTPVQIVRVDYPKRSAAVITEAYFRQASTTDYNGVY-RGKYIDFEAKETKNKTAFPL 81 (168)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEECCCCEEEEEEECCSSSCCEEEEEEECCCSSCSEEEEE-TTEEEEEEEEEECCSSEEEG
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEE-CCEEEEEEEEECCCCCEECH
T ss_conf 79999999999997797999970798389961577665644677796467988755675-56589999630368870453
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 88698999999999978986999839
Q gi|254781194|r 59 GRLSNAQKRVIATLLLYHQKVQVLSS 84 (98)
Q Consensus 59 gkls~~Q~~~~~~l~~~G~~~~Vv~s 84 (98)
...+++|...++++...|+.++++=.
T Consensus 82 ~ni~~HQi~~L~~~~~~gGI~F~iI~ 107 (168)
T d1y1oa_ 82 KNFHAHQIRHMEQVVAHGGICFAILR 107 (168)
T ss_dssp GGSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 30779999999999978997999999
No 6
>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]}
Probab=89.01 E-value=0.82 Score=23.96 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEEECC---------CCCCCHHHHHH-------------
Q ss_conf 99999999997898899971489887662799915991999997278---------98869899999-------------
Q gi|254781194|r 11 LEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTS---------RGRLSNAQKRV------------- 68 (98)
Q Consensus 11 ie~~i~~~~k~~g~~~~k~~~~g~~G~PDli~~~~~g~~~fIEvK~~---------~gkls~~Q~~~------------- 68 (98)
||..+.+.+.+.|-+ |....+.-+|-||+ ++.+-.-+ |++-.- ...|..+...|
T Consensus 2 ~E~~lr~~L~~~G~R-yR~~~k~lpG~PDi-v~~~~k~a--IfvdGcFWH~h~c~~~~~Pktn~efW~~Ki~~N~~RD~~ 77 (134)
T d1vsra_ 2 IEKRLASLLTGQGLA-FRVQDASLPGRPDF-VVDEYRCV--IFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRR 77 (134)
T ss_dssp CCHHHHHHHHHTTCC-CEESCTTSTTCCSE-EEGGGTEE--EEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCE-EEECCCCCCCCCCE-EECCCCEE--EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 789999999978986-88648889999889-63376389--997174036899655689985579999999988887999
Q ss_pred -HHHHHHCCCEEEEEC
Q ss_conf -999997898699983
Q gi|254781194|r 69 -IATLLLYHQKVQVLS 83 (98)
Q Consensus 69 -~~~l~~~G~~~~Vv~ 83 (98)
...|.++|+.|.+++
T Consensus 78 ~~~~L~~~GW~vl~iW 93 (134)
T d1vsra_ 78 DISRLQELGWRVLIVW 93 (134)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCEEEEEE
T ss_conf 9999998889899996
No 7
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=68.88 E-value=2.4 Score=21.18 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHH
Q ss_conf 898869899999999997898699983-989999999986
Q gi|254781194|r 57 SRGRLSNAQKRVIATLLLYHQKVQVLS-STEEVDGFLRML 95 (98)
Q Consensus 57 ~~gkls~~Q~~~~~~l~~~G~~~~Vv~-s~e~v~~~i~~l 95 (98)
|.|+.|+-|+.++.....-+..+.-|+ ++||.+.+++.+
T Consensus 184 P~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~ 223 (511)
T d1kl7a_ 184 PTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAI 223 (511)
T ss_dssp ETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 6888866789987403776599998436767788999999
No 8
>d1t0fa2 c.52.1.16 (A:7-168) TnsA endonuclease, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=54.55 E-value=6.7 Score=18.59 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=30.9
Q ss_pred CCCEEEEECCCC--EEEEEEECCCCCCC--HHHH--HHHHHHHHCCCEEEEECC
Q ss_conf 662799915991--99999727898869--8999--999999978986999839
Q gi|254781194|r 37 CPDRLIITPNGA--HFWVEMKTSRGRLS--NAQK--RVIATLLLYHQKVQVLSS 84 (98)
Q Consensus 37 ~PDli~~~~~g~--~~fIEvK~~~gkls--~~Q~--~~~~~l~~~G~~~~Vv~s 84 (98)
.||+++.+.||. .+.+|+|-...-.. ..++ ......+..|..+.++-.
T Consensus 106 TtDFLV~~~dG~~~~~a~eVKp~~~l~~~r~~eKleier~yw~~~Gi~~~ivTE 159 (162)
T d1t0fa2 106 STDFLVDCKDGPFEQFAIQVKPAAALQDERTLEKLELERRYWQQKQIPWFIFTD 159 (162)
T ss_dssp EEEEEEEESSSSCSEEEEEECCGGGGGCHHHHHHHHHHHHHHHHHTCCEEEECG
T ss_pred ECCEEEEEECCCEEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 225899981897889999965568842977999999999999984994899736
No 9
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=49.87 E-value=9.3 Score=17.78 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=36.8
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHH-CCC-EEEEE--------C-CHHHHHHHHHHHHC
Q ss_conf 599199999727898869899999999997-898-69998--------3-98999999998623
Q gi|254781194|r 45 PNGAHFWVEMKTSRGRLSNAQKRVIATLLL-YHQ-KVQVL--------S-STEEVDGFLRMLEC 97 (98)
Q Consensus 45 ~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~-~G~-~~~Vv--------~-s~e~v~~~i~~l~~ 97 (98)
.||. ++|=++.|.|++++.|...+..+.+ .|. ...+. + ..+++.+++++|+-
T Consensus 12 ~dG~-~~vri~~p~G~it~~ql~~la~ia~~yg~g~i~lTtrq~l~l~~i~~~~~~~v~~~L~~ 74 (80)
T d1zj8a1 12 KNGL-NAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDA 74 (80)
T ss_dssp TTSS-EEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCEECHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 5970-99999466859999999999999997399949887987589758998999999999998
No 10
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}
Probab=37.37 E-value=11 Score=17.43 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHHH
Q ss_conf 89886989999999999789869998---39899999999862
Q gi|254781194|r 57 SRGRLSNAQKRVIATLLLYHQKVQVL---SSTEEVDGFLRMLE 96 (98)
Q Consensus 57 ~~gkls~~Q~~~~~~l~~~G~~~~Vv---~s~e~v~~~i~~l~ 96 (98)
|.|+.|+.|+.++.. .|..+.++ -++||++.+++++-
T Consensus 158 P~g~vS~~Q~~Qmtt---~g~nv~vi~V~G~fDDcq~lvk~~f 197 (428)
T d1vb3a1 158 PRGKISPLQEKLFCT---LGGNIETVAIDGDFDACQALVKQAF 197 (428)
T ss_dssp ETTCSCHHHHHHHHS---CCTTEEEEEEESCHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHH---CCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 688875899988764---4677137842787547899998876
No 11
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=36.16 E-value=14 Score=16.70 Aligned_cols=49 Identities=20% Similarity=0.359 Sum_probs=35.8
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHH-CC-CEEEEEC---------CHHHHHHHHHHHH
Q ss_conf 199999727898869899999999997-89-8699983---------9899999999862
Q gi|254781194|r 48 AHFWVEMKTSRGRLSNAQKRVIATLLL-YH-QKVQVLS---------STEEVDGFLRMLE 96 (98)
Q Consensus 48 ~~~fIEvK~~~gkls~~Q~~~~~~l~~-~G-~~~~Vv~---------s~e~v~~~i~~l~ 96 (98)
.++.+=++.|+|.+|+.|...+..+.+ .| ....+.. ..+++.++++.|+
T Consensus 83 ~~fmvRvr~p~G~lt~~Ql~~la~ia~~yg~g~i~iTtRQ~iql~gI~~~~l~~i~~~L~ 142 (152)
T d1zj8a2 83 KYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLD 142 (152)
T ss_dssp EEEEEEEBCGGGEECHHHHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHHH
T ss_pred CEEEEEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 669999825897726999999999999848997015687327846988889999999999
No 12
>d1dcea2 b.7.4.1 (A:242-350) Rab geranylgeranyltransferase alpha-subunit, insert domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=35.25 E-value=5.6 Score=19.06 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=31.5
Q ss_pred CCCEEEEEECCCC--CCCCCEEEEECCCCEEEEEEECCCCCCCHHH
Q ss_conf 8988999714898--8766279991599199999727898869899
Q gi|254781194|r 22 LDCLVFKTQFINQ--RGCPDRLIITPNGAHFWVEMKTSRGRLSNAQ 65 (98)
Q Consensus 22 ~g~~~~k~~~~g~--~G~PDli~~~~~g~~~fIEvK~~~gkls~~Q 65 (98)
.++...-|.-|-. +|.-+|+++. ||...++|-.+|.|+.++.+
T Consensus 13 e~~l~v~FSrpv~v~~~~~~L~L~~-Dg~p~~veWRtp~gr~r~s~ 57 (109)
T d1dcea2 13 EACLSVCFSRPLTVGSRMGTLLLMV-DEAPLSVEWRTPDGRNRPSH 57 (109)
T ss_dssp TTEEEEEEEEEECTTBTTBCEEEEE-SSSEECCCCBCTTSSCCSEE
T ss_pred CCEEEEEECCCEECCCCCCEEEEEE-CCCCEEEEEECCCCCCCCCC
T ss_conf 6748999625134066655179996-79827999768998667583
No 13
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=34.22 E-value=16 Score=16.32 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=35.8
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHH
Q ss_conf 9999972789886989999999999789869----99839899999999862
Q gi|254781194|r 49 HFWVEMKTSRGRLSNAQKRVIATLLLYHQKV----QVLSSTEEVDGFLRMLE 96 (98)
Q Consensus 49 ~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~e~v~~~i~~l~ 96 (98)
+++.++-.+.......|...++.|..+|+.+ .++.+++++.++++.+.
T Consensus 217 ~~~y~~~~~~~~~~~~~~e~l~~L~~~gf~~~~~~~~~~~~~~v~~~~~~~~ 268 (312)
T d1b04a_ 217 LFVYGLADAEALGIASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWH 268 (312)
T ss_dssp EEEEEETTTTTTTCCBHHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHH
T ss_pred HEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 1001123454544121999999998637654342389799999999999999
No 14
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=29.43 E-value=20 Score=15.84 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=25.1
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 9199999727898869899999999997
Q gi|254781194|r 47 GAHFWVEMKTSRGRLSNAQKRVIATLLL 74 (98)
Q Consensus 47 g~~~fIEvK~~~gkls~~Q~~~~~~l~~ 74 (98)
...++|=++.|+|++++.|...+..+.+
T Consensus 17 ~g~~~vri~~p~G~lt~~ql~~la~ia~ 44 (85)
T d2akja1 17 QGLSFVGLHIPVGRLQADEMEELARIAD 44 (85)
T ss_dssp TTEEEEEECCGGGEECHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCEECHHHHHHHHHHHH
T ss_conf 9869999976895929999999999999
No 15
>d1xmxa_ c.52.1.26 (A:) Hypothetical protein VC1899 {Vibrio cholerae [TaxId: 666]}
Probab=26.87 E-value=22 Score=15.57 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=24.6
Q ss_pred CCEEEEECCCCEEEEEEECCCCCC----CHHHHHHH-HHHHHCCCEEEEEC
Q ss_conf 627999159919999972789886----98999999-99997898699983
Q gi|254781194|r 38 PDRLIITPNGAHFWVEMKTSRGRL----SNAQKRVI-ATLLLYHQKVQVLS 83 (98)
Q Consensus 38 PDli~~~~~g~~~fIEvK~~~gkl----s~~Q~~~~-~~l~~~G~~~~Vv~ 83 (98)
=|+++.. +++.++||||+.+-+. +-.+...+ +++-.....++.|-
T Consensus 294 lDv~~~~-~~~l~~IECKt~~~~~~~~~~l~kl~~l~~~lgG~~~r~~LVs 343 (385)
T d1xmxa_ 294 LDVATVV-NNKLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVS 343 (385)
T ss_dssp EEEEEEE-TTEEEEEEEESSCCCC-CCCHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 6899997-9999999956888775457889999999998289532499999
Done!