RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781194|ref|YP_003065607.1| hypothetical protein
CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>gnl|CDD|37354 KOG2143, KOG2143, KOG2143, Uncharacterized conserved protein
           [Function unknown].
          Length = 854

 Score = 25.8 bits (56), Expect = 2.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 36  GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQV 81
           G PD  +  P    F  VE+K    RLS  Q+  +A L     +V+V
Sbjct: 796 GFPDLTLWNPETKRFKLVEVKGPNDRLSEKQRLWLALLADSGIRVEV 842


>gnl|CDD|119440 cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the
           asymmetrical cyclization of tetrapyrrole (linear) to
           uroporphyrinogen-III, the fourth step in the
           biosynthesis of heme. This ubiquitous enzyme is present
           in eukaryotes, bacteria and archaea. Mutations in the
           human uroporphyrinogen-III synthase gene cause
           congenital erythropoietic porphyria, a recessive inborn
           error of metabolism also known as Gunther disease.
          Length = 239

 Score = 25.7 bits (57), Expect = 3.1
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 8/75 (10%)

Query: 30  QFINQRGCPDRLIIT-PNGAHFWVEMKTSRGRLSNAQKRVIA-------TLLLYHQKVQV 81
             +      D LI T PN    + E     G  + A  ++ A        L         
Sbjct: 42  AALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLTADF 101

Query: 82  LSSTEEVDGFLRMLE 96
           +    + +G L +LE
Sbjct: 102 VPEEGDSEGLLELLE 116


>gnl|CDD|37786 KOG2575, KOG2575, KOG2575, Glucosyltransferase - Alg6p
           [Carbohydrate transport and metabolism, Amino acid
           transport and metabolism].
          Length = 510

 Score = 24.1 bits (52), Expect = 8.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%)

Query: 51  WVEMKTSRGRLSNAQKR------VIATLLLY 75
           WV + TSRG  S A K       +I+ LL+Y
Sbjct: 120 WVALHTSRGFESIAHKLFMRSTVIISDLLIY 150


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,077,698
Number of extensions: 45246
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 4
Length of query: 98
Length of database: 6,263,737
Length adjustment: 66
Effective length of query: 32
Effective length of database: 4,837,543
Effective search space: 154801376
Effective search space used: 154801376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.8 bits)