RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781194|ref|YP_003065607.1| hypothetical protein
CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>gnl|CDD|149740 pfam08774, VRR_NUC, VRR-NUC domain. 
          Length = 96

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 36 GCPDRLIITPNGAHF-WVEMKTSRGRLSNAQKRVIATLLLYHQKVQVLSSTE 86
          G PD ++  P G  F  VE+K    +LS  Q+  +  L     KV V  S E
Sbjct: 45 GVPDLILFLPPGKRFLLVEVKGPGDKLSPEQRAWLDRLARSGFKVAVCDSVE 96


>gnl|CDD|151735 pfam11294, DUF3095, Protein of unknown function (DUF3095).  Some
           members in this bacterial family of proteins are
           annotated as adenylyl cyclase however this cannot be
           confirmed. Currently no function is known.
          Length = 373

 Score = 28.8 bits (65), Expect = 0.36
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 20/77 (25%)

Query: 38  PDRLIITPNGAHFWVEMKTSRG-------RLSNAQKRVIATLLL-------------YHQ 77
            +   +        +E +  RG       RL    + ++  LL              Y Q
Sbjct: 228 VEGPKLKWPPQGLDIEARARRGVGLLWLRRLKVLIQTLLGYLLFRTGLKLGGFDPRRYLQ 287

Query: 78  KVQVLSSTEEVDGFLRM 94
           +V   S   + D  LRM
Sbjct: 288 EVVENSDFRKFDDGLRM 304


>gnl|CDD|178127 PLN02511, PLN02511, hydrolase.
          Length = 388

 Score = 25.1 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 9/41 (21%)

Query: 5   YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITP 45
           Y+    L  R    SK    +VF     N RGC D  + TP
Sbjct: 117 YVRHMLLRAR----SKGWRVVVF-----NSRGCADSPVTTP 148


>gnl|CDD|180745 PRK06915, PRK06915, acetylornithine deacetylase; Validated.
          Length = 422

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 51 WVEMKTSRGRLSNAQKRVIATL 72
           ++ K+  G  S AQ  VI  L
Sbjct: 26 LIQEKSVSGDESGAQAIVIEKL 47


>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
           Provisional.
          Length = 506

 Score = 24.9 bits (55), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 59  GRLS--NAQKRVIATLLLYHQKVQVL 82
            RLS  N QK V+A  LL + K+ +L
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILIL 429


>gnl|CDD|115607 pfam06962, rRNA_methylase, Putative rRNA methylase.  This family
           contains a number of putative rRNA methylases. Note that
           many family members are hypothetical proteins.
          Length = 140

 Score = 24.1 bits (53), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 26  VFKTQFINQRGCPDRLII 43
           V + QFINQ   P   +I
Sbjct: 120 VLQYQFINQVNAP-PFLI 136


>gnl|CDD|147889 pfam05977, DUF894, Bacterial protein of unknown function (DUF894). 
           This family consists of several bacterial proteins, many
           of which are annotated as putative transmembrane
           transport proteins.
          Length = 524

 Score = 24.3 bits (53), Expect = 7.8
 Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 4/34 (11%)

Query: 43  ITPNGAHFWVEMKTSRGRLSNAQKRVIATLLLYH 76
             P     W+E      R++ A K V   L   H
Sbjct: 477 HVPT----WLEYLRQNHRVTQADKDVEERLRALH 506


>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
           Reviewed.
          Length = 561

 Score = 24.4 bits (53), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 26  VFKTQFINQR---GCPDRLIITPNGAH 49
           V K Q++ ++    CPD +I+T  G H
Sbjct: 365 VIKPQYVIEQIYELCPDAIIVTEVGQH 391


>gnl|CDD|118672 pfam10144, SMP_2, Bacterial virulence factor haemolysin.  Members
           of this family of bacterial proteins are membrane
           proteins that effect the expression of haemolysin under
           anaerobic conditions.
          Length = 210

 Score = 24.0 bits (52), Expect = 9.6
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 58  RGRLSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRM 94
           R RL+   K   A      Q V+ +S      GFLR+
Sbjct: 110 RDRLALDGKE--AGSYFNQQIVEPISGKNGPLGFLRV 144


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,465,723
Number of extensions: 75616
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 15
Length of query: 98
Length of database: 5,994,473
Length adjustment: 65
Effective length of query: 33
Effective length of database: 4,589,953
Effective search space: 151468449
Effective search space used: 151468449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.1 bits)