RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781194|ref|YP_003065607.1| hypothetical protein
CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 1.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 64 AQKRVIATLLLY 75
          A K++ A+L LY
Sbjct: 21 ALKKLQASLKLY 32


>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
           phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
          Length = 497

 Score = 26.3 bits (57), Expect = 1.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 24  CLVFKTQFINQRGCPDRLIITPNGAHFWVE 53
           CL  K   ++ RG  +  II P  AH   +
Sbjct: 143 CLSAKMYALHHRGITEPEIIAPVTAHAGFD 172


>2bih_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum,
          nitrate assimilation, oxidoreductase; HET: MTV; 2.60A
          {Pichia angusta}
          Length = 474

 Score = 25.5 bits (55), Expect = 3.3
 Identities = 5/12 (41%), Positives = 6/12 (50%)

Query: 39 DRLIITPNGAHF 50
          D   +TP   HF
Sbjct: 66 DSGFLTPVSLHF 77


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 24.5 bits (52), Expect = 5.6
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 39  DRLIITPNGAHFWVEMKTSRGRLS--NAQKRVI 69
           DRL   P     W E +  R RL   +A  +V+
Sbjct: 78  DRLTQEPESIRKWREEQ--RKRLQELDAASKVM 108


>1ie9_A Vitamin D3 receptor; VDR, MC1288, gene regulation; HET: VDX;
          1.40A {Homo sapiens} SCOP: a.123.1.1 PDB: 1db1_A*
          1ie8_A* 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A*
          1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3cs4_A* 3cs6_A* 2zfx_A*
          2zmi_A* 2zla_A* 2zlc_A* 2zmh_A* 2zl9_A* ...
          Length = 259

 Score = 24.3 bits (52), Expect = 7.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 58 RGRLSNAQKRVIATLLLYHQK 78
          R +LS  Q+R+IA LL  H K
Sbjct: 4  RPKLSEEQQRIIAILLDAHHK 24


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.324    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 774,020
Number of extensions: 29441
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 7
Length of query: 98
Length of database: 5,693,230
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,141,614
Effective search space: 140814876
Effective search space used: 140814876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.6 bits)