RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781194|ref|YP_003065607.1| hypothetical protein
CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)



>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 340

 Score = 25.1 bits (54), Expect = 1.6
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 5   YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRL 61
           Y++E  L  ++    K  +  +   + ++     D + + P     WV    +  R+
Sbjct: 221 YIAEL-LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRI 276


>d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 218

 Score = 24.9 bits (53), Expect = 1.9
 Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 6/35 (17%)

Query: 34  QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRV 68
           Q+G        P   HF+       G++       
Sbjct: 174 QKGILITHRTLPGANHFFN------GKVDELMGEC 202


>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha
           {Acidaminococcus fermentans [TaxId: 905]}
          Length = 317

 Score = 23.0 bits (49), Expect = 6.6
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 39  DRLIITPNGAHF 50
           D +++ P GAH 
Sbjct: 235 DAVVLAPYGAHP 246


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 335,913
Number of extensions: 12766
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 5
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.6 bits)