RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781194|ref|YP_003065607.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62] (98 letters) >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340 Score = 25.1 bits (54), Expect = 1.6 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 5 YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRL 61 Y++E L ++ K + + + ++ D + + P WV + R+ Sbjct: 221 YIAEL-LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRI 276 >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} Length = 218 Score = 24.9 bits (53), Expect = 1.9 Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 6/35 (17%) Query: 34 QRGCPDRLIITPNGAHFWVEMKTSRGRLSNAQKRV 68 Q+G P HF+ G++ Sbjct: 174 QKGILITHRTLPGANHFFN------GKVDELMGEC 202 >d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Length = 317 Score = 23.0 bits (49), Expect = 6.6 Identities = 5/12 (41%), Positives = 8/12 (66%) Query: 39 DRLIITPNGAHF 50 D +++ P GAH Sbjct: 235 DAVVLAPYGAHP 246 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.136 0.402 Gapped Lambda K H 0.267 0.0458 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 335,913 Number of extensions: 12766 Number of successful extensions: 42 Number of sequences better than 10.0: 1 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 5 Length of query: 98 Length of database: 2,407,596 Length adjustment: 60 Effective length of query: 38 Effective length of database: 1,583,796 Effective search space: 60184248 Effective search space used: 60184248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 47 (22.6 bits)