BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781194|ref|YP_003065607.1| hypothetical protein
CLIBASIA_05505 [Candidatus Liberibacter asiaticus str. psy62]
         (98 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781194|ref|YP_003065607.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 98

 Score =  205 bits (522), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60
          MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR
Sbjct: 1  MRTDYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGR 60

Query: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY 98
          LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY
Sbjct: 61 LSNAQKRVIATLLLYHQKVQVLSSTEEVDGFLRMLECY 98


>gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score =  105 bits (263), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 63/93 (67%)

Query: 5   YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64
           Y +E  +EKRLV G+KKLDC V K  F+ +RGCPDRLIITPNG  +W+E+K   GRLS+ 
Sbjct: 8   YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67

Query: 65  QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97
           Q   I  L    Q+V+VL S EEVD FL  L C
Sbjct: 68  QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 24.3 bits (51), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 39  DRLIITPNGAHFWVEMKTS 57
           D  +  P+G++ WV++K S
Sbjct: 453 DHTVALPDGSYMWVQIKES 471


>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 369

 Score = 24.3 bits (51), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 4   DYLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLII 43
           ++LS  +L + L    KK  CLV   + ++ +G P  +++
Sbjct: 314 NFLSPERLAEELCSAMKKPSCLVQMAKQVSMKGKPQAVLM 353


>gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 307

 Score = 22.7 bits (47), Expect = 1.5,   Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 35  RGCPDRLIITPNGAH 49
           + C +  ++TPNG H
Sbjct: 293 KACGEAFLMTPNGGH 307


>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 367

 Score = 21.2 bits (43), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 80  QVLSSTEEVDGFLRMLECY 98
           Q L+   EVD  + +L C+
Sbjct: 90  QFLAHIREVDAIIHVLRCF 108


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,273
Number of Sequences: 1233
Number of extensions: 1690
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 98
length of database: 328,796
effective HSP length: 61
effective length of query: 37
effective length of database: 253,583
effective search space:  9382571
effective search space used:  9382571
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)