Query gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 119
No_of_seqs 120 out of 1548
Neff 3.5
Searched_HMMs 13730
Date Wed Jun 1 11:45:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781196.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dgsa3 d.142.2.2 (A:1-314) Ad 99.7 1.6E-17 1.2E-21 129.3 5.3 66 54-119 1-66 (314)
2 d1ta8a_ d.142.2.2 (A:) Adenyla 99.7 1.8E-16 1.3E-20 122.8 9.2 66 54-119 2-67 (313)
3 d1b04a_ d.142.2.2 (A:) Adenyla 99.6 6.1E-16 4.4E-20 119.4 8.6 65 55-119 1-65 (312)
4 d1h6pa_ a.146.1.1 (A:) TRF2 {H 23.3 23 0.0017 14.7 3.5 24 81-104 163-186 (203)
5 d1px5a1 a.160.1.2 (A:201-346) 22.1 8.2 0.00059 17.5 -0.2 62 47-118 42-109 (146)
6 d1p2za1 b.121.2.2 (A:5-650) Ad 19.0 18 0.0013 15.3 1.1 28 12-39 468-496 (646)
7 d1gq2a2 c.58.1.3 (A:23-279) Mi 18.0 30 0.0022 14.0 2.5 33 73-105 192-225 (257)
8 d1o0sa2 c.58.1.3 (A:2-295) Mit 17.1 31 0.0023 13.8 2.4 31 76-106 232-264 (294)
9 d1vqov1 a.2.2.1 (V:1-65) Ribos 16.5 32 0.0024 13.8 2.4 24 47-70 4-27 (65)
10 d1m4la_ c.56.5.1 (A:) Carboxyp 16.0 26 0.0019 14.4 1.2 28 90-117 15-42 (307)
No 1
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
Probab=99.67 E-value=1.6e-17 Score=129.29 Aligned_cols=66 Identities=33% Similarity=0.553 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 899999999999999999999975545898569899999999999999978642689897353889
Q gi|254781196|r 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119 (119)
Q Consensus 54 Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~ISDaEYD~L~~eL~~LE~~~PeL~~~dSPT~~VGy 119 (119)
|++.+++.+|++|+++|.+||++||+.++|+|||++||+|+++|.+||.+||+|+.++|||++||.
T Consensus 1 m~~~~~~~~i~~L~~~i~~~~~~YY~~~~p~IsD~~YD~L~~eL~~le~~~p~l~~~~s~~~~vg~ 66 (314)
T d1dgsa3 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQVGA 66 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHHHHTTSSGGGCCTTSGGGGCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 988999999999999999999997648999789999999999999999869000267896400112
No 2
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]}
Probab=99.66 E-value=1.8e-16 Score=122.76 Aligned_cols=66 Identities=30% Similarity=0.430 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 899999999999999999999975545898569899999999999999978642689897353889
Q gi|254781196|r 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119 (119)
Q Consensus 54 Lsk~EA~~eie~L~k~I~~Hn~~YY~~D~P~ISDaEYD~L~~eL~~LE~~~PeL~~~dSPT~~VGy 119 (119)
|+-.+|..++++|+++|++||++||+.++|+|||++||+|+++|.+||.+||+++.++|||++||.
T Consensus 2 ~~~~~~~~~~~~L~~~i~~~~~~Yy~~~~p~iSD~eYD~L~~~L~~le~~~p~~~~~~s~~~~vg~ 67 (313)
T d1ta8a_ 2 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVGG 67 (313)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHHHCGGGCCTTCGGGGGCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 887899999999999999999998618999798899999999999999868022477885300245
No 3
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.62 E-value=6.1e-16 Score=119.40 Aligned_cols=65 Identities=32% Similarity=0.454 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999999975545898569899999999999999978642689897353889
Q gi|254781196|r 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119 (119)
Q Consensus 55 sk~EA~~eie~L~k~I~~Hn~~YY~~D~P~ISDaEYD~L~~eL~~LE~~~PeL~~~dSPT~~VGy 119 (119)
.+.+|+.||++|+++|.+||++||+.++|+|||++||+|+.+|..||.+||+|+..+||+++||.
T Consensus 1 ~~~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~l~~~~s~~~~v~~ 65 (312)
T d1b04a_ 1 DRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGG 65 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHHHHHHHCGGGCCTTCGGGGTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 95899999999999999999998628999799999999999999999868222468997512233
No 4
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.31 E-value=23 Score=14.68 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 898569899999999999999978
Q gi|254781196|r 81 DNPLFTDGLYDRVSERLDALQEQF 104 (119)
Q Consensus 81 D~P~ISDaEYD~L~~eL~~LE~~~ 104 (119)
.-|.+-..-|+.++..+..+-+.+
T Consensus 163 ~H~~lq~FSy~~~~~kI~~fv~~~ 186 (203)
T d1h6pa_ 163 AHPVIQNFSYETFQQKMLRFLESH 186 (203)
T ss_dssp CTTSSCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 758998647999999999999998
No 5
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=22.11 E-value=8.2 Score=17.54 Aligned_cols=62 Identities=31% Similarity=0.519 Sum_probs=44.4
Q ss_pred HCCCHHHCCHHHHHHHHHHHHHHHHHHHH------HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 21378878999999999999999999999------7554589856989999999999999997864268989735388
Q gi|254781196|r 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQK------WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118 (119)
Q Consensus 47 kak~v~~Lsk~EA~~eie~L~k~I~~Hn~------~YY~~D~P~ISDaEYD~L~~eL~~LE~~~PeL~~~dSPT~~VG 118 (119)
++..-+..+-++...-+.+|+ .+|.. .||+.++|.|++...-+ |-..-|-+.++-.||++||
T Consensus 42 ~g~~~~~f~~a~gFrtVleLv---~~y~~LciyWt~~Y~~~~~~v~~~l~~q-------l~~~RPvILDPAdPT~NVa 109 (146)
T d1px5a1 42 QGSRKTDFSTAQGFQTVLELV---LKHQKLCIFWEAYYDFTNPVVGRCMLQQ-------LKKPRPVILDPADPTGNVG 109 (146)
T ss_dssp HHTCCSSCCHHHHHHHHHHHH---HTGGGCEECCCSSCCSSSHHHHHHHHHH-------HTSSSCEEBCTTCTTCBTT
T ss_pred HCCCCCCCHHHHHHHHHHHHH---HHHHEEEEEECCCCCCCCHHHHHHHHHH-------HCCCCCCEECCCCCCCCCC
T ss_conf 647887750999999999999---7666367631356575425677888987-------3568971337989755545
No 6
>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]}
Probab=19.05 E-value=18 Score=15.30 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=22.8
Q ss_pred HCCCCCCCCHHHHH-HHHHHHHHHCCCCC
Q ss_conf 01320075887724-66202056556600
Q gi|254781196|r 12 KFENEHNITPAQWK-KLLTLEAKFLPNKR 39 (119)
Q Consensus 12 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 39 (119)
-+.-|-|+.-|.|+ |+.|=-|+||||+-
T Consensus 468 v~amEINL~AnLwRsFLysNVAlYLPD~y 496 (646)
T d1p2za1 468 NFAMEINLNANLWRNFLYSNIALYLPDKL 496 (646)
T ss_dssp CCCEEECHHHHHHHHHHHHHTGGGSCGGG
T ss_pred CCCEEECHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 11067628788887788877787667445
No 7
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=17.96 E-value=30 Score=13.97 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=27.0
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHH-HHHHHCC
Q ss_conf 99975545898569899999999999-9999786
Q gi|254781196|r 73 HQKWYYRLDNPLFTDGLYDRVSERLD-ALQEQFP 105 (119)
Q Consensus 73 Hn~~YY~~D~P~ISDaEYD~L~~eL~-~LE~~~P 105 (119)
.+-.|-..-.|-++..+||+++.|.. ++...||
T Consensus 192 ~DP~YlG~R~~R~~g~eY~~fvdefv~av~~~~p 225 (257)
T d1gq2a2 192 KDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYG 225 (257)
T ss_dssp HCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 2964356567787614789999999999998579
No 8
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=17.14 E-value=31 Score=13.85 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHH-HHHHHC-CC
Q ss_conf 75545898569899999999999-999978-64
Q gi|254781196|r 76 WYYRLDNPLFTDGLYDRVSERLD-ALQEQF-PE 106 (119)
Q Consensus 76 ~YY~~D~P~ISDaEYD~L~~eL~-~LE~~~-Pe 106 (119)
.|-..-.|-|++.+||+++.+.. ++...| |.
T Consensus 232 lYlG~R~~R~~g~~Yd~fidefv~av~~~fgp~ 264 (294)
T d1o0sa2 232 FYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQK 264 (294)
T ss_dssp TCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 325666778870579999999999999750898
No 9
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=16.54 E-value=32 Score=13.76 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred HCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 213788789999999999999999
Q gi|254781196|r 47 KAKKVTSLSKGEAMIEVEYLVKIA 70 (119)
Q Consensus 47 kak~v~~Lsk~EA~~eie~L~k~I 70 (119)
+++.+-+||..|-..++.+|.+++
T Consensus 4 K~~elr~ls~~eL~~~l~elk~El 27 (65)
T d1vqov1 4 HVQEIRDMTPAEREAELDDLKTEL 27 (65)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 789998689999999999999999
No 10
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.02 E-value=26 Score=14.41 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999999999999786426898973538
Q gi|254781196|r 90 YDRVSERLDALQEQFPELFDEDHPWNTV 117 (119)
Q Consensus 90 YD~L~~eL~~LE~~~PeL~~~dSPT~~V 117 (119)
||.+...+.+|.++||+++.-.+.-+.+
T Consensus 15 y~ei~~~l~~l~~~~p~~v~~~~iG~S~ 42 (307)
T d1m4la_ 15 LDEIYDFMDLLVAEHPQLVSKLQIGRSY 42 (307)
T ss_dssp HHHHHHHHHHHHHHCTTTEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999999998789936999721878
Done!